Citrus Sinensis ID: 026940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEEEEccccHHHHHHHHHccccccccccEEEEccEEcccccccccccccccccccEEEEEcccEEEEEEEccccEEEEEccccccHHHHHHHcHHHccccccccEEccccEEccccccccccccccccEEEEEEEEcccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHccccccccEEEcccEEccccccccccccccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccc
Coil and Loop (DISEMBL)
MQIFVKTltgktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGDF
Flexible Loop (DISEMBL)
mqifvktltgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLAdyniqkestlhlvlrlrggdf
Low Complexity Region (SEG)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Disordered region (IsUnstruct)
***FVKTLTGKTITLEV************************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES***I******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRL*****
Disordered Region (DISOPRED)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Disordered Region (DISEMBL)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Disordered Region (DISPRO)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
P0CH05	458	Polyubiquitin OS=Petrosel	N/A	no	1.0	0.502	1.0	1e-128
P0CH04	458	Polyubiquitin OS=Petrosel	N/A	no	1.0	0.502	1.0	1e-128
P0CH32	382	Polyubiquitin 4 OS=Arabid	yes	no	1.0	0.602	0.995	1e-127
Q1EC66	306	Polyubiquitin 3 OS=Arabid	no	no	1.0	0.751	0.995	1e-127
Q8H159	457	Polyubiquitin 10 OS=Arabi	no	no	0.991	0.498	1.0	1e-127
P0CG85	457	Polyubiquitin OS=Nicotian	N/A	no	0.991	0.498	1.0	1e-127
P69322	381	Polyubiquitin OS=Pisum sa	N/A	no	0.991	0.598	1.0	1e-126
Q3E7T8	305	Polyubiquitin 14 OS=Arabi	no	no	0.991	0.747	1.0	1e-126
P69325	305	Polyubiquitin OS=Glycine	no	no	0.991	0.747	1.0	1e-126
P69309	305	Polyubiquitin OS=Avena fa	N/A	no	0.991	0.747	1.0	1e-126

>sp|P0CH05|UBI2P_PETCR Polyubiquitin OS=Petroselinum crispum GN=PCUBI4-2 PE=3 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 408

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Petroselinum crispum (taxid: 4043)

>sp|P0CH04|UBI1P_PETCR Polyubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=2 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 408

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Petroselinum crispum (taxid: 4043)

>sp|P0CH32|UBQ4_ARATH Polyubiquitin 4 OS=Arabidopsis thaliana GN=UBQ4 PE=1 SV=1

 Score =  455 bits (1170), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 332

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 382

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EC66|UBQ3_ARATH Polyubiquitin 3 OS=Arabidopsis thaliana GN=UBQ3 PE=1 SV=1

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H159|UBQ10_ARATH Polyubiquitin 10 OS=Arabidopsis thaliana GN=UBQ10 PE=1 SV=2

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CG85|UBI1P_NICSY Polyubiquitin OS=Nicotiana sylvestris GN=UBI11 PE=2 SV=1

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Nicotiana sylvestris (taxid: 4096)

>sp|P69322|UBIQP_PEA Polyubiquitin OS=Pisum sativum GN=PU1 PE=2 SV=2

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Pisum sativum (taxid: 3888)

>sp|Q3E7T8|UBQ14_ARATH Polyubiquitin 14 OS=Arabidopsis thaliana GN=UBQ14 PE=1 SV=2

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P69325|UBIQP_SOYBN Polyubiquitin OS=Glycine max GN=SUBI-1 PE=2 SV=2

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Glycine max (taxid: 3847)

>sp|P69309|UBIQP_AVEFA Polyubiquitin OS=Avena fatua PE=2 SV=2

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Avena fatua (taxid: 4499)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
356545971	269	PREDICTED: polyubiquitin-like [Glycine m	1.0	0.855	1.0	1e-127
302595949	458	RecName: Full=Polyubiquitin; Contains: R	1.0	0.502	1.0	1e-126
224286458	458	unknown [Picea sitchensis]	1.0	0.502	1.0	1e-126
356537527	306	PREDICTED: polyubiquitin 3-like [Glycine	1.0	0.751	1.0	1e-126
30523391	230	ubiquitin [Hevea brasiliensis]	1.0	1.0	0.995	1e-126
424513675	359	polyubiquitin [Bathycoccus prasinos]	0.773	0.495	0.995	1e-126
68160568	382	polyubiquitin [Noccaea caerulescens]	1.0	0.602	0.995	1e-126
28436481	250	putative polyubiquitin [Arabidopsis thal	1.0	0.92	0.995	1e-126
312160	534	ubiquitin [Solanum lycopersicum]	1.0	0.430	0.995	1e-126
297809843	309	hypothetical protein ARALYDRAFT_490270 [	0.991	0.737	1.0	1e-126

>gi|356545971|ref|XP_003541406.1| PREDICTED: polyubiquitin-like [Glycine max]

 Score =  458 bits (1179), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 40  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 99

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 100 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 159

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 160 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 219

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Sbjct: 220 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302595949|sp|P0CH04.1|UBI1P_PETCR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor gi|302595950|sp|P0CH05.1|UBI2P_PETCR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor gi|288112|emb|CAA45621.1| polyubiquitin [Petroselinum crispum] gi|288114|emb|CAA45622.1| polyubiquitin [Petroselinum crispum]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 408

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224286458|gb|ACN40936.1| unknown [Picea sitchensis]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 408

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537527|ref|XP_003537278.1| PREDICTED: polyubiquitin 3-like [Glycine max]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30523391|gb|AAP31578.1| ubiquitin [Hevea brasiliensis]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 230/230 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD+
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDY 230

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|424513675|emb|CCO66297.1| polyubiquitin [Bathycoccus prasinos]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/229 (99%), Positives = 229/229 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 128 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 187

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 188 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 247

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 248 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 307

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Sbjct: 308 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 356

Source: Bathycoccus prasinos

Species: Bathycoccus prasinos

Genus: Bathycoccus

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|68160568|gb|AAY86773.1| polyubiquitin [Noccaea caerulescens]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 230/230 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 332

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+F
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGNF 382

Source: Noccaea caerulescens

Species: Noccaea caerulescens

Genus: Noccaea

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28436481|gb|AAO43307.1| putative polyubiquitin [Arabidopsis thaliana]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 80

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 140

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 141 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 200

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 201 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312160|emb|CAA51679.1| ubiquitin [Solanum lycopersicum]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 484

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 
Sbjct: 485 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDL 534

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809843|ref|XP_002872805.1| hypothetical protein ARALYDRAFT_490270 [Arabidopsis lyrata subsp. lyrata] gi|297318642|gb|EFH49064.1| hypothetical protein ARALYDRAFT_490270 [Arabidopsis lyrata subsp. lyrata]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2180434	382	UBQ4 "AT5G20620" [Arabidopsis	1.0	0.602	0.995	5.6e-116
TAIR|locus:2143548	306	UBQ3 "AT5G03240" [Arabidopsis	1.0	0.751	0.995	5.6e-116
TAIR|locus:2115663	457	UBQ10 "AT4G05320" [Arabidopsis	0.991	0.498	1.0	2.4e-115
TAIR|locus:2140200	305	UBQ14 "AT4G02890" [Arabidopsis	0.991	0.747	1.0	2.4e-115
TAIR|locus:2138386	229	UBQ11 "AT4G05050" [Arabidopsis	0.991	0.995	1.0	2.4e-115
POMBASE|SPBC337.08c	382	ubi4 "ubiquitin" [Schizosaccha	1.0	0.602	0.969	1.2e-113
SGD|S000003962	381	UBI4 "Ubiquitin" [Saccharomyce	0.995	0.601	0.969	1.5e-113
UNIPROTKB|G4MY63	305	MGG_01282 "Polyubiquitin" [Mag	0.991	0.747	0.973	1.9e-113
CGD|CAL0004945	229	UBI4 [Candida albicans (taxid:	0.991	0.995	0.973	1.9e-113
UNIPROTKB|Q5ADS0	229	UBI4 "Putative uncharacterized	0.991	0.995	0.973	1.9e-113

TAIR|locus:2180434 UBQ4 "AT5G20620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:   213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 332

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct:   333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 382

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2143548 UBQ3 "AT5G03240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:   137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct:   257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

GO:0005622 "intracellular" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0010224 "response to UV-B" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

TAIR|locus:2115663 UBQ10 "AT4G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

GO:0006464 "cellular protein modification process" evidence=ISS;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0007568 "aging" evidence=IEP

TAIR|locus:2140200 UBQ14 "AT4G02890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:   137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

TAIR|locus:2138386 UBQ11 "AT4G05050" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

GO:0005622 "intracellular" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

POMBASE|SPBC337.08c ubi4 "ubiquitin" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
 Identities = 223/230 (96%), Positives = 229/230 (99%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:   213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 272

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 332

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG F
Sbjct:   333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGLF 382

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0007126 "meiosis" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=NAS

GO:0016579 "protein deubiquitination" evidence=NAS

GO:0031386 "protein tag" evidence=NAS

SGD|S000003962 UBI4 "Ubiquitin" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 222/229 (96%), Positives = 229/229 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:   213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 272

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 332

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG+
Sbjct:   333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGN 381

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IC

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0031386 "protein tag" evidence=ISS

GO:0006950 "response to stress" evidence=TAS

GO:0006513 "protein monoubiquitination" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0030437 "ascospore formation" evidence=TAS

GO:0016579 "protein deubiquitination" evidence=TAS

GO:0043008 "ATP-dependent protein binding" evidence=TAS

UNIPROTKB|G4MY63 MGG_01282 "Polyubiquitin" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 222/228 (97%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:   137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 196

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 256

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

CGD|CAL0004945 UBI4 [Candida albicans (taxid:5476)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 222/228 (97%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 180

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228

GO:0016567 "protein ubiquitination" evidence=IGI;ISS;IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0031386 "protein tag" evidence=IGI;ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0033554 "cellular response to stress" evidence=IEP;IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

UNIPROTKB|Q5ADS0 UBI4 "Putative uncharacterized protein UBI4" [Candida albicans SC5314 (taxid:237561)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 222/228 (97%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 180

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009405 "pathogenesis" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IGI;ISS;IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0031386 "protein tag" evidence=IGI;ISS

GO:0033554 "cellular response to stress" evidence=IEP;IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CG81	UBIQH_DICDI	No assigned EC number	0.9432	0.9956	0.6010	yes	no
P0CG82	UBIQP_TETPY	No assigned EC number	0.9473	0.9913	0.5984	N/A	no
P42739	UBIQP_ACECL	No assigned EC number	0.9521	1.0	0.5437	N/A	no
P0CG84	UBI4P_NICSY	No assigned EC number	1.0	0.9913	0.6047	N/A	no
P0CG85	UBI1P_NICSY	No assigned EC number	1.0	0.9913	0.4989	N/A	no
P69315	UBIQP_LINUS	No assigned EC number	0.9956	0.9913	0.7475	N/A	no
Q1EC66	UBQ3_ARATH	No assigned EC number	0.9956	1.0	0.7516	no	no
P23324	UBIQP_EUPEU	No assigned EC number	0.9605	0.9913	0.9956	N/A	no
P0CG88	UBIQJ_DICDI	No assigned EC number	0.9432	0.9956	0.7508	no	no
P62976	UBIQP_CRIGR	No assigned EC number	0.9605	0.9913	0.3465	yes	no
P0CG71	UBIQ1_CAEEL	No assigned EC number	0.9565	1.0	0.2744	yes	no
P0CG70	UBI4P_NEUCR	No assigned EC number	0.9736	0.9913	0.7475	N/A	no
P0CH27	RL402_TRYCR	No assigned EC number	0.9736	0.9913	0.6404	N/A	no
P0CG72	UBI4P_SCHPO	No assigned EC number	0.9695	1.0	0.6020	yes	no
P0CG75	UBI4P_KLULA	No assigned EC number	0.9736	0.9913	0.5984	yes	no
P0CG74	UBI4P_CANAX	No assigned EC number	0.9736	0.9913	0.7475	N/A	no
P0CG50	UBC_MOUSE	No assigned EC number	0.9605	0.9913	0.3106	yes	no
P0CG53	UBB_BOVIN	No assigned EC number	0.9605	0.9913	0.7475	yes	no
P0CH05	UBI2P_PETCR	No assigned EC number	1.0	1.0	0.5021	N/A	no
P0CH04	UBI1P_PETCR	No assigned EC number	1.0	1.0	0.5021	N/A	no
P0CH28	UBC_BOVIN	No assigned EC number	0.9605	0.9913	0.3304	yes	no
P0CG55	UBB_SHEEP	No assigned EC number	0.9605	0.9913	0.7475	N/A	no
P0CG54	UBB_CAVPO	No assigned EC number	0.9521	1.0	0.7395	yes	no
Q58G87	UBQ3_ORYSJ	No assigned EC number	1.0	0.9913	0.5984	no	no
P59669	UBIQP_GEOCY	No assigned EC number	0.9605	0.9913	0.4989	N/A	no
Q3E7T8	UBQ14_ARATH	No assigned EC number	1.0	0.9913	0.7475	no	no
Q8MKD1	UBB_HORSE	No assigned EC number	0.9561	0.9913	0.7475	no	no
P0CG73	UBI1P_CANAX	No assigned EC number	0.9692	0.9913	0.9956	N/A	no
P69309	UBIQP_AVEFA	No assigned EC number	1.0	0.9913	0.7475	N/A	no
P0CG49	UBB_MOUSE	No assigned EC number	0.9605	0.9913	0.7475	no	no
P69322	UBIQP_PEA	No assigned EC number	1.0	0.9913	0.5984	N/A	no
P0CG66	UBC_GORGO	No assigned EC number	0.9605	0.9913	0.3743	N/A	no
P42740	UBIQP_AGLNE	No assigned EC number	0.9561	0.9913	0.4989	N/A	no
P69325	UBIQP_SOYBN	No assigned EC number	1.0	0.9913	0.7475	no	no
P0CG62	UBB_CHICK	No assigned EC number	0.9605	0.9913	0.7475	no	no
P0CG63	UBI4P_YEAST	No assigned EC number	0.9694	0.9956	0.6010	yes	no
P0CG60	UBB_PONPY	No assigned EC number	0.9605	0.9913	0.9956	N/A	no
P0CH32	UBQ4_ARATH	No assigned EC number	0.9956	1.0	0.6020	yes	no
P0CH33	UBQ11_ARATH	No assigned EC number	1.0	0.9913	0.9956	no	no
P0CG65	UBB_PANTR	No assigned EC number	0.9605	0.9913	0.9956	yes	no
Q63429	UBC_RAT	No assigned EC number	0.9605	0.9913	0.2814	yes	no
P0CG47	UBB_HUMAN	No assigned EC number	0.9605	0.9913	0.9956	yes	no
P0CG61	UBC_PONPY	No assigned EC number	0.9605	0.9913	0.2996	N/A	no
P0CG67	UBB_GORGO	No assigned EC number	0.9605	0.9913	0.9956	N/A	no
P0CG51	UBB_RAT	No assigned EC number	0.9605	0.9913	0.7475	no	no
Q8H159	UBQ10_ARATH	No assigned EC number	1.0	0.9913	0.4989	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0006_2333 Putative polyubiquitin (383 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
cd01803	76	cd01803, Ubiquitin, Ubiquitin	3e-46
cd01803	76	cd01803, Ubiquitin, Ubiquitin	3e-46
cd01803	76	cd01803, Ubiquitin, Ubiquitin	3e-46
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-29
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-29
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-29
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	5e-29
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	5e-29
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	5e-29
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	6e-27
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	6e-27
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	6e-27
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	2e-25
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	2e-25
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	2e-25
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	4e-22
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	4e-22
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	4e-22
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	4e-19
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	4e-19
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	4e-19
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	3e-17
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	3e-17
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	3e-17
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	3e-15
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	3e-15
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	3e-15
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	2e-14
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	2e-14
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	2e-14
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	5e-13
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	5e-13
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	5e-13
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	8e-13
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	8e-13
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	8e-13
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	9e-13
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	9e-13
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	9e-13
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	5e-12
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	5e-12
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	5e-12
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	6e-11
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	6e-11
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	6e-11
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	5e-10
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	5e-10
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	5e-10
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	1e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	1e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	1e-09
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-09
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-09
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-09
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	4e-09
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	4e-09
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	4e-09
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	1e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	1e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	1e-06
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	8e-06
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	8e-06
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	8e-06
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	9e-06
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	9e-06
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	9e-06
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	6e-05
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	6e-05
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	6e-05
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	1e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	1e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	1e-04
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	5e-04
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	5e-04
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	5e-04
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	7e-04
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	7e-04
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.001

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 3e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 3e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  147 bits (373), Expect = 3e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-29
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1  IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 61 IQKESTLHLVLR 72
          IQ  ST+HLVLR
Sbjct: 61 IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-29
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 137 IQKESTLHLVLR 148
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (261), Expect = 2e-29
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 213 IQKESTLHLVLR 224
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 5e-29
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65
          KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1  KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 66 TLHLVLRLR 74
          TLHLVLRLR
Sbjct: 61 TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 5e-29
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 142 TLHLVLRLR 150
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (259), Expect = 5e-29
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 217
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 218 TLHLVLRLR 226
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 6e-27
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          ++  S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 6e-27
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 6e-27
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 2e-25
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 4  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
           VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1  TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 64 ESTLHLVLR 72
           STLHLVLR
Sbjct: 61 GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 2e-25
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 80  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 140 ESTLHLVLR 148
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.3 bits (235), Expect = 2e-25
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 216 ESTLHLVLR 224
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 86.0 bits (213), Expect = 4e-22
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1  MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          +   ST+H+VL+LRGG
Sbjct: 61 VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 86.0 bits (213), Expect = 4e-22
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 86.0 bits (213), Expect = 4e-22
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 4e-19
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 61  IQKESTLHLVLRLRGG 76
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 4e-19
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 137 IQKESTLHLVLRLRGG 152
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 4e-19
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 213 IQKESTLHLVLRLRGG 228
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 72.9 bits (180), Expect = 3e-17
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59
          ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1  IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 60 NIQKESTLHLVL 71
          +I+   T+ +V+
Sbjct: 61 DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 72.9 bits (180), Expect = 3e-17
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 135
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 136 NIQKESTLHLVL 147
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 72.9 bits (180), Expect = 3e-17
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 211
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 212 NIQKESTLHLVL 223
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 68.1 bits (167), Expect = 3e-15
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
          M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1  MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 59 YNI 61
          Y I
Sbjct: 61 YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 68.1 bits (167), Expect = 3e-15
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 135 YNI 137
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 68.1 bits (167), Expect = 3e-15
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 211 YNI 213
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1  IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 61 IQKESTLHLVLR 72
          ++   T+HLV R
Sbjct: 61 VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 137 IQKESTLHLVLR 148
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 213 IQKESTLHLVLR 224
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 5e-13
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 4  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
           VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1  KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 64 ESTLHLVLR 72
             L LV R
Sbjct: 61 GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 5e-13
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 80  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 140 ESTLHLVLR 148
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 61.8 bits (150), Expect = 5e-13
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 216 ESTLHLVLR 224
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 8e-13
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1  MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 61 IQKESTLHLVLRLRGG 76
          +++  TL +  RL GG
Sbjct: 59 VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 8e-13
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 137 IQKESTLHLVLRLRGG 152
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 8e-13
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 213 IQKESTLHLVLRLRGG 228
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 3  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1  VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 63 KESTLHLVLR 72
          ++S LH V R
Sbjct: 61 QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 79  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 139 KESTLHLVLR 148
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 215 KESTLHLVLR 224
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1  MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 61 IQKESTLHLVLR 72
          I   + L+LV+R
Sbjct: 61 IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 137 IQKESTLHLVLR 148
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 213 IQKESTLHLVLR 224
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 6e-11
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5  LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 68 HLVLRLRGG 76
          HL L+ RGG
Sbjct: 65 HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 6e-11
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 144 HLVLRLRGG 152
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 6e-11
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 220 HLVLRLRGG 228
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          YN+     + L++R
Sbjct: 61 YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 77  MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 135 YNIQKESTLHLVLR 148
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 153 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 211 YNIQKESTLHLVLR 224
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 3  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1  ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 63 KESTLHLVLRLRGG 76
             T+ + LRLRGG
Sbjct: 61 PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 79  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 139 KESTLHLVLRLRGG 152
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 215 KESTLHLVLRLRGG 228
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1  MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 58 DYNI 61
          +Y I
Sbjct: 61 EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 134 DYNI 137
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 210 DYNI 213
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
              +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1  DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 5  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
          V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3  VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 65 STLHLVL 71
            + +++
Sbjct: 63 YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 81  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 141 STLHLVL 147
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 216
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 217 STLHLVL 223
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1  IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 61 IQKESTLHLVLR 72
          I+   T+HLV++
Sbjct: 60 IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 137 IQKESTLHLVLR 148
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 213 IQKESTLHLVLR 224
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69
          G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9  GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 70 V 70
          +
Sbjct: 69 L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 146 V 146
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 222 V 222
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 62
            T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9  ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 138
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 214
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 133
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 134 DYNIQKESTLHLVLR 148
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 209
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 210 DYNIQKESTLHLVLR 224
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 5  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLADYNIQ 62
          VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L    + 
Sbjct: 7  VKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLG 66

Query: 63 KESTLHLVLR 72
            ST+ LV++
Sbjct: 67 PGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 18 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 64
            + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21 SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 65 STLHLVLR 72
            +H+V+R
Sbjct: 81 IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 94  ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 140
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 141 STLHLVLR 148
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 170 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 216
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 217 STLHLVLR 224
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2  MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 61 IQKESTLHLVLRLRGGM 77
          +   S L LV  +  G+
Sbjct: 61 LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 137 IQKESTLHLVLRLRGGM 153
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 213 IQKESTLHLV 222
           +   S L LV
Sbjct: 61  LGDGSKLTLV 70

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.86
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.83
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.82
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.8
PTZ00044	76	ubiquitin; Provisional	99.79
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.79
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.79
PTZ00044	76	ubiquitin; Provisional	99.78
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.78
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.78
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.78
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.77
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.76
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.76
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.76
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.76
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.76
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.75
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.75
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.74
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.74
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.74
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.73
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.73
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.72
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.72
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.71
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.71
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.71
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.7
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.7
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.7
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.69
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.69
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.68
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.67
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.67
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.67
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.67
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.66
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.65
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.65
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.64
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.64
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.64
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.63
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.62
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.62
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.61
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.61
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.6
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.56
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.55
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.53
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.52
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.49
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.48
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.47
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.45
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.43
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.39
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.37
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.37
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.36
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.36
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.34
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.34
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.32
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.28
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.23
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.21
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.19
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.15
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.13
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	99.11
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	99.1
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.09
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.07
PLN02560	308	enoyl-CoA reductase	99.0
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.95
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.95
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.94
PLN02560	308	enoyl-CoA reductase	98.9
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.83
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.82
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.78
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.74
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.73
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.67
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.65
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.56
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	98.55
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	98.51
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.46
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.46
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.45
KOG4495	110	consensus RNA polymerase II transcription elongati	98.39
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	98.34
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.28
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.23
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	98.18
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.12
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	98.0
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	97.97
KOG4495	110	consensus RNA polymerase II transcription elongati	97.95
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.85
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.85
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.81
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.69
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.62
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.54
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.48
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	97.3
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.26
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.25
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	97.2
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.19
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	97.16
COG5417	81	Uncharacterized small protein [Function unknown]	97.14
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	97.12
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	97.09
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	97.06
KOG1639	297	consensus Steroid reductase required for elongatio	97.04
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	97.02
KOG0013	231	consensus Uncharacterized conserved protein [Funct	97.01
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	96.98
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.97
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	96.94
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	96.91
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	96.82
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	96.76
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	96.57
KOG1639	297	consensus Steroid reductase required for elongatio	96.49
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	96.48
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	96.47
COG5417	81	Uncharacterized small protein [Function unknown]	96.46
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.4
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.33
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	96.24
PRK06437	67	hypothetical protein; Provisional	96.17
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	96.08
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	95.92
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	95.87
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	95.78
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	95.65
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	95.38
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	95.35
PRK08364	70	sulfur carrier protein ThiS; Provisional	95.34
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	94.98
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	94.94
PRK06488	65	sulfur carrier protein ThiS; Validated	94.84
PRK06437	67	hypothetical protein; Provisional	94.68
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	94.57
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	94.37
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	94.28
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	94.23
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	94.18
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	94.09
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	93.82
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	93.56
KOG4583	391	consensus Membrane-associated ER protein involved	93.52
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	93.37
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	93.14
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	93.09
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	93.07
PF12754	309	Blt1: Cell-cycle control medial ring component; In	92.65
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	92.57
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	92.42
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	92.33
PRK06488	65	sulfur carrier protein ThiS; Validated	92.33
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	91.86
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	91.84
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	91.83
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	91.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.59
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	91.55
PRK08364	70	sulfur carrier protein ThiS; Provisional	91.46
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	91.37
smart00455	70	RBD Raf-like Ras-binding domain.	91.18
PRK07440	70	hypothetical protein; Provisional	91.08
KOG0012	380	consensus DNA damage inducible protein [Replicatio	91.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	90.94
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	90.83
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	90.59
smart00455	70	RBD Raf-like Ras-binding domain.	90.58
PF14453	57	ThiS-like: ThiS-like ubiquitin	90.51
PRK08053	66	sulfur carrier protein ThiS; Provisional	90.36
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	90.23
PRK07696	67	sulfur carrier protein ThiS; Provisional	90.11
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	89.89
PRK05659	66	sulfur carrier protein ThiS; Validated	89.55
PRK05863	65	sulfur carrier protein ThiS; Provisional	89.43
KOG4598	1203	consensus Putative ubiquitin-specific protease [Po	89.12
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	88.98
KOG4583	391	consensus Membrane-associated ER protein involved	88.96
PRK06083	84	sulfur carrier protein ThiS; Provisional	88.76
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	88.54
PRK05659	66	sulfur carrier protein ThiS; Validated	88.46
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	87.63
KOG0012	380	consensus DNA damage inducible protein [Replicatio	87.54
PRK05863	65	sulfur carrier protein ThiS; Provisional	87.47
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	87.15
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	87.12
PRK08053	66	sulfur carrier protein ThiS; Provisional	87.1
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	86.84
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	86.3
TIGR02958	452	sec_mycoba_snm4 secretion protein snm4. Members of	86.2
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	85.55
TIGR02958	452	sec_mycoba_snm4 secretion protein snm4. Members of	85.5
PRK07696	67	sulfur carrier protein ThiS; Provisional	85.5
PF12754	309	Blt1: Cell-cycle control medial ring component; In	85.5
PRK06944	65	sulfur carrier protein ThiS; Provisional	85.39
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	85.15
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	84.96
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	84.12
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	84.04
PF14453	57	ThiS-like: ThiS-like ubiquitin	83.96
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	83.95
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	83.92
PF14732	87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	83.58
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	83.5
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	83.03
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	83.03
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	82.51
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	82.29
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	82.24
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	82.22
PRK07440	70	hypothetical protein; Provisional	82.1
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	81.77
cd01818	77	TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo	81.31
KOG4261	1003	consensus Talin [Cytoskeleton]	81.2
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	80.37
PRK06083	84	sulfur carrier protein ThiS; Provisional	80.31

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.86  E-value=3.5e-21  Score=133.10  Aligned_cols=95  Identities=44%  Similarity=0.647  Sum_probs=90.9

Q ss_pred             hhccccCCceEEEEEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCC
Q 026940          134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI  213 (230)
Q Consensus       134 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i  213 (230)
                      -+++.+-+++++.+++...|.|+|+...|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I   88 (103)
T cd01802           9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI   88 (103)
T ss_pred             ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence            35667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEecCC
Q 026940          214 QKESTLHLVLRLRGG  228 (230)
Q Consensus       214 ~~~~~i~l~~~~~gg  228 (230)
                      ++|++|+++++++||
T Consensus        89 ~~~stL~l~~~l~GG  103 (103)
T cd01802          89 SEGCTLKLVLAMRGG  103 (103)
T ss_pred             CCCCEEEEEEecCCC
Confidence            999999999999998

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.83  E-value=4.9e-20  Score=127.39  Aligned_cols=97  Identities=43%  Similarity=0.627  Sum_probs=90.3

Q ss_pred             ccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhh
Q 026940           56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY  135 (230)
Q Consensus        56 l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~  135 (230)
                      .-.+++.+-+++++.+++.+.|+|+|++.+|+.+.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy   86 (103)
T cd01802           7 PPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY   86 (103)
T ss_pred             CCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHc
Confidence            34456677789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCceEEEEEeecc
Q 026940          136 NIQKESTLHLVLRLRGG  152 (230)
Q Consensus       136 ~i~~~~~i~l~~~~~~~  152 (230)
                      +|.++++|++.+++.+|
T Consensus        87 ~I~~~stL~l~~~l~GG  103 (103)
T cd01802          87 NISEGCTLKLVLAMRGG  103 (103)
T ss_pred             CCCCCCEEEEEEecCCC
Confidence            99999999999887654

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.82  E-value=4.3e-20  Score=120.90  Aligned_cols=73  Identities=36%  Similarity=0.653  Sum_probs=71.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999875

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.80  E-value=1.9e-19  Score=117.78  Aligned_cols=74  Identities=41%  Similarity=0.621  Sum_probs=69.9

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|+|+.  ++++++++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|||+++++|+++++++||
T Consensus         1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            4677876  4788999999999999999999999999999999999999999999999999999999999999998

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PTZ00044 ubiquitin; Provisional

Probab=99.79  E-value=3.2e-19  Score=117.55  Aligned_cols=74  Identities=49%  Similarity=0.785  Sum_probs=71.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~   74 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR   74 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998764

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.79  E-value=3.3e-19  Score=116.68  Aligned_cols=73  Identities=40%  Similarity=0.596  Sum_probs=69.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+||+.  +++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++|+.+++.+
T Consensus         1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G   73 (74)
T cd01793           1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG   73 (74)
T ss_pred             CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            89999984  78999999999999999999999999999999999999999999999999999999999988643

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.79  E-value=4.2e-19  Score=116.16  Aligned_cols=74  Identities=32%  Similarity=0.618  Sum_probs=71.6

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |+|++..|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++++++++..+++||
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999987

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PTZ00044 ubiquitin; Provisional

Probab=99.78  E-value=6e-19  Score=116.21  Aligned_cols=76  Identities=50%  Similarity=0.822  Sum_probs=73.8

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|.|+|+.|+|+.+|++|++++|++|++.++++||
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999997

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.78  E-value=4.5e-19  Score=116.70  Aligned_cols=75  Identities=36%  Similarity=0.618  Sum_probs=71.2

Q ss_pred             CEEEEEccCCcE-EEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~-~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|+. +.++ +.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~   77 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP   77 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            899999999997 7895 89999999999999999999999999999999999999999999999999999988753

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.78  E-value=6.7e-19  Score=114.10  Aligned_cols=71  Identities=24%  Similarity=0.378  Sum_probs=68.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |+|+|++..|+.+.+++++++||++||++|++..|+|+++|+|.|.|+.|+|+.+|++||+.+++++||..
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            78999999999999999999999999999999999999999999999999999999999999999999863

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.78  E-value=1.4e-18  Score=114.54  Aligned_cols=76  Identities=55%  Similarity=0.965  Sum_probs=73.6

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|.|+..+|+++.++++++.||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++|+++.+++||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999997

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.77  E-value=1.5e-18  Score=114.36  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=73.6

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++||+++|++|++.++++||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999998

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.76  E-value=1.6e-18  Score=113.39  Aligned_cols=73  Identities=36%  Similarity=0.653  Sum_probs=70.5

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  149 (230)
                      |+|+|+..+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++++++++++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.76  E-value=2.3e-18  Score=113.56  Aligned_cols=76  Identities=25%  Similarity=0.467  Sum_probs=73.2

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      |+|+|+...|+.+++++++++||++||++|+++.++|+++|+|+|+|+.|+|+ +|++|||++|++|+++..++||.
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~   77 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL   77 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence            78999999999999999999999999999999999999999999999999998 99999999999999999999984

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01803 Ubiquitin Ubiquitin

Probab=99.76  E-value=2.4e-18  Score=113.39  Aligned_cols=74  Identities=96%  Similarity=1.299  Sum_probs=71.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++.
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~   74 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998764

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.76  E-value=3.2e-18  Score=112.74  Aligned_cols=74  Identities=54%  Similarity=0.931  Sum_probs=71.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|++.+++++++.++.+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~   74 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR   74 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998754

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.76  E-value=3e-18  Score=111.06  Aligned_cols=71  Identities=24%  Similarity=0.378  Sum_probs=68.0

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      |.|.|++..|+.+.+++++++||++||++|++..|+|+++|||+|.|+.|+|+++|++|||++|++|+|..
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            67889999999999999999999999999999999999999999999999999999999999999999975

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.75  E-value=3.3e-18  Score=112.80  Aligned_cols=74  Identities=24%  Similarity=0.468  Sum_probs=70.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++..|+.+++++++++||++||++|++..|+|+++|+|.|.|+.|+|+ +|++||+.+++++++...+..
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~   75 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEA   75 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccc
Confidence            89999999999999999999999999999999999999999999999999998 999999999999999887643

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.75  E-value=2.6e-18  Score=112.36  Aligned_cols=72  Identities=31%  Similarity=0.575  Sum_probs=69.3

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |||+++.|+++++++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++||+.+++++++.++..
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~   72 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR   72 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence            689999999999999999999999999999999999999999999999999999999999999999988754

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.74  E-value=8.1e-18  Score=111.09  Aligned_cols=73  Identities=38%  Similarity=0.705  Sum_probs=70.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC--CCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi--~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+.+.+++++++||++||++|++.+|+  |+++|+|+|+|+.|+|+.+|++||+.+++++++.++.
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence            899999999999999999999999999999999999  9999999999999999999999999999999987654

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.74  E-value=7.8e-18  Score=109.70  Aligned_cols=72  Identities=44%  Similarity=0.704  Sum_probs=69.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|+..+|+.+++++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+++++++..+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            899999999999999999999999999999999999999999999999999999999999999999998753

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.74  E-value=5.5e-18  Score=109.13  Aligned_cols=68  Identities=37%  Similarity=0.581  Sum_probs=65.6

Q ss_pred             EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      .|+..+|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.+
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999999875

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.73  E-value=1.1e-17  Score=110.02  Aligned_cols=75  Identities=36%  Similarity=0.618  Sum_probs=70.3

Q ss_pred             eeEEEEeccCce-eEEE-eeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          153 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       153 ~~i~v~~~~~~~-~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      |.|+|++.+|++ ++++ +++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+..
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~   77 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP   77 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            678999999997 6885 89999999999999999999999999999999999999999999999999999998753

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.73  E-value=8.7e-18  Score=108.75  Aligned_cols=70  Identities=39%  Similarity=0.733  Sum_probs=67.4

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |+|++..|+++.+++++++||++||++|++..|+|+.+|+|+|+|+.|+|+.+|++||+.+++++|++.+
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            6899999999999999999999999999999999999999999999999999999999999999998753

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.72  E-value=2.9e-17  Score=106.10  Aligned_cols=69  Identities=57%  Similarity=0.970  Sum_probs=65.7

Q ss_pred             EeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       158 ~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      ++.+|+.+++++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|||++|++|+++.|.|
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence            457899999999999999999999999999999999999999999999999999999999999998865

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.72  E-value=1.7e-17  Score=107.34  Aligned_cols=70  Identities=39%  Similarity=0.733  Sum_probs=66.8

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      |+|+..+|+++++++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            4678889999999999999999999999999999999999999999999999999999999999999865

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.71  E-value=4.7e-17  Score=107.42  Aligned_cols=74  Identities=38%  Similarity=0.692  Sum_probs=70.1

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCC--CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      |.|+|++.+|+.+.+++++++||.+||++|++.+|+  |+++|+|+|+|+.|+|+.+|++||+++|++|+++++.+
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~   76 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP   76 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence            578999999999999999999999999999999999  99999999999999999999999999999999988753

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.71  E-value=2.5e-17  Score=109.26  Aligned_cols=73  Identities=32%  Similarity=0.431  Sum_probs=69.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEE--EeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l--~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|  .++|+.|.|+.+|++||+.+++++++.++.
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            7899999999999999999999999999999999999999999  788999999999999999999999998763

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.1e-17  Score=99.41  Aligned_cols=70  Identities=54%  Similarity=0.911  Sum_probs=68.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~   70 (230)
                      |.|.|+++.|+.+.++++|.++|..+|++|+.+.||||.+|+|.|.|+++.|+.|-++|++..||.+|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999974

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.70  E-value=3.1e-17  Score=107.74  Aligned_cols=70  Identities=33%  Similarity=0.666  Sum_probs=67.3

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      .+|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++++|++|+++++++||.
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~   74 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR   74 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999984

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.70  E-value=4.4e-17  Score=104.90  Aligned_cols=68  Identities=37%  Similarity=0.581  Sum_probs=65.4

Q ss_pred             EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940           80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  147 (230)
                      +|+..+|+++.+++++++||+++|++|++..|+|++.|+|+|+|+.|+|+.+|.+|+++++++||+.+
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            57888999999999999999999999999999999999999999999999999999999999999875

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.70  E-value=6.6e-17  Score=104.40  Aligned_cols=68  Identities=56%  Similarity=0.962  Sum_probs=65.3

Q ss_pred             EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+.+|+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++||+.++++|++..++
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            57889999999999999999999999999999999999999999999999999999999999998765

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.69  E-value=8.3e-17  Score=104.83  Aligned_cols=72  Identities=44%  Similarity=0.704  Sum_probs=68.7

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      |.|+|+..+|+.+++++++++||.+||++|++.+|+|++.|+|.|+|+.|+|+.+|++||+++|++|+++.+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            578999999999999999999999999999999999999999999999999999999999999999998764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.69  E-value=6.3e-17  Score=107.36  Aligned_cols=73  Identities=32%  Similarity=0.431  Sum_probs=69.9

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEE--EEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L--~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      |.|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|  .|+|+.|+|+.+|++||+++|++|+++++.
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            7899999999999999999999999999999999999999999  789999999999999999999999999883

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.68  E-value=1.2e-16  Score=103.65  Aligned_cols=71  Identities=34%  Similarity=0.489  Sum_probs=67.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |.|+|++.+|+ +.+++++++||++||++|++..|+|+.+|+|.|+|+.|.|+.+|++||+.+++++|++++
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            67999999997 599999999999999999999999999999999999999999999999999999999764

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=5.4e-18  Score=113.05  Aligned_cols=76  Identities=97%  Similarity=1.301  Sum_probs=73.3

Q ss_pred             eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      .++++...|++..+++++++||..+|+.|....|+|+++|+|+|+|+.|+|+.||++||++.-|||+++.|++||.
T Consensus         2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~   77 (128)
T KOG0003|consen    2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI   77 (128)
T ss_pred             cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence            5778889999999999999999999999999999999999999999999999999999999999999999999993

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.67  E-value=1.2e-16  Score=103.43  Aligned_cols=68  Identities=35%  Similarity=0.543  Sum_probs=64.2

Q ss_pred             EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeee
Q 026940            3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV   70 (230)
Q Consensus         3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~   70 (230)
                      ++|++. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++||+.+++.+++.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            578999 899999999999999999999999999999999999999999987 68999999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.67  E-value=1.9e-16  Score=102.74  Aligned_cols=71  Identities=34%  Similarity=0.489  Sum_probs=65.9

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      +.|++++.+|+ ..+++++++||.+||++|++..|+|+++|+|.|+|+.|+|+.+|++||+++|++|++++|
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            35788888886 589999999999999999999999999999999999999999999999999999999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.5e-17  Score=110.93  Aligned_cols=76  Identities=99%  Similarity=1.337  Sum_probs=72.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |.+|++.+.|++.+++++|++||..+|.+|++..|+||++|+|.|+|+.|+|..|+++||+...+++|+++++.++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999887433

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.66  E-value=5e-16  Score=104.59  Aligned_cols=78  Identities=18%  Similarity=0.446  Sum_probs=74.9

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..|.|.|+..+|+...++|.+++|+..||++++++.|+|+++++|+|+|+.|+++.|+.+||+++|++|+++++++||
T Consensus        10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763          10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            447888999999999999999999999999999999999999999999999999999999999999999999999998

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.65  E-value=3.5e-16  Score=101.57  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=66.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |+|+|+.. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++||+.+|+++++..
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            68999996 99999999999999999999999999999999999999999999999999999999998763

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=8.8e-17  Score=115.32  Aligned_cols=76  Identities=96%  Similarity=1.328  Sum_probs=73.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |.|||+++.|++.++++.+++||..+|.+|++..||||++|+|+|.|++|+|..+|++|+|...+++++++++.++
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg   76 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987543

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.64  E-value=4.7e-16  Score=102.12  Aligned_cols=68  Identities=32%  Similarity=0.655  Sum_probs=64.5

Q ss_pred             cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      ++|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.+
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g   72 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG   72 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence            47899999999999999999999999999999999999999999999999999999999999987643

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.64  E-value=6.2e-16  Score=100.68  Aligned_cols=71  Identities=24%  Similarity=0.267  Sum_probs=63.3

Q ss_pred             eeEEEEeccCceeE--EEeeccccHHHHHHHhccccC--CCCCceEEEEcCeecCCCCcccccC--CCCCCEEEEEE
Q 026940          153 MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~--i~v~~~~tV~~lK~~i~~~~~--~~~~~q~L~~~g~~L~d~~tL~~~~--i~~~~~i~l~~  223 (230)
                      +.++|++.+++++.  +++++++||.+||++|++..+  .|+++|+|+|.|+.|+|+.||++|+  +.+|.+|||++
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            67899999999855  445899999999999999875  4579999999999999999999997  99999999986

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.64  E-value=5.6e-16  Score=100.32  Aligned_cols=68  Identities=35%  Similarity=0.543  Sum_probs=62.9

Q ss_pred             EEEEec-cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEE
Q 026940          155 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV  222 (230)
Q Consensus       155 i~v~~~-~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~  222 (230)
                      ++|+.. +|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+ .+|++|||++|++|++.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            356777 889999999999999999999999999999999999999999886 68999999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.63  E-value=8e-16  Score=100.16  Aligned_cols=68  Identities=24%  Similarity=0.439  Sum_probs=63.5

Q ss_pred             eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE---cCeecCCCCcccccCCCCCCEEEEE
Q 026940          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~---~g~~L~d~~tL~~~~i~~~~~i~l~  222 (230)
                      .|.|+ ++|+.+++++++++||++||++|++.+|+|+++|+|+|   .|+.++|+.+|++|+|++|+.|+++
T Consensus         2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            46666 78899999999999999999999999999999999996   8999999999999999999999886

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=3.7e-16  Score=112.11  Aligned_cols=77  Identities=95%  Similarity=1.310  Sum_probs=74.1

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      |.|+|+...+++...++.+++||..+|+.|++..|||+++|||+|.|+.|+|..+|+||+|+..++|+++++++||.
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~   77 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA   77 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence            46888989999999999999999999999999999999999999999999999999999999999999999999995

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.62  E-value=1.3e-15  Score=98.81  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=65.1

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      ++|.|+.. |+.+++++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++||+++|++|+++.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            46788865 88999999999999999999999999999999999999999999999999999999998863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.61  E-value=2e-15  Score=98.24  Aligned_cols=69  Identities=23%  Similarity=0.427  Sum_probs=64.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe---ccccccCCccccccccccccceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~---~g~~l~d~~tl~~~~i~~~~~i~l~   70 (230)
                      |.|.|+. +|++|++++++++||++||++|++.+|+||++|+|++   .|+.+.|+.+|++|++.+++.+++.
T Consensus         1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            6788876 6899999999999999999999999999999999996   8999999999999999999998875

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.61  E-value=1.4e-15  Score=98.96  Aligned_cols=70  Identities=26%  Similarity=0.293  Sum_probs=62.8

Q ss_pred             CEEEEEccCCcE--EEEEecCCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCccccccc--cccccceeee
Q 026940            1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~tl~~~~--i~~~~~i~l~   70 (230)
                      |.++||+.+|+.  |.+++++++||++||++|+...+  .|+++|+|+|.|+.|.|+.||++|+  +.++.++||+
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV   77 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV   77 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence            578999999998  55555899999999999999885  4579999999999999999999997  9999999986

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=1.1e-15  Score=90.98  Aligned_cols=70  Identities=54%  Similarity=0.911  Sum_probs=67.0

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  146 (230)
                      |.|.++++.|+.+.++++++++|..+|++++++.||||.+|+|+|.|+.+.|+.+-++|++..||++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            5688999999999999999999999999999999999999999999999999999999999999999873

>smart00213 UBQ Ubiquitin homologues

Probab=99.56  E-value=9.1e-15  Score=92.80  Aligned_cols=64  Identities=61%  Similarity=0.864  Sum_probs=61.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccccccc
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES   65 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~   65 (230)
                      |+|+|+..+ +.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++||+.+++
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            799999998 7999999999999999999999999999999999999999999999999998874

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.55  E-value=3.6e-14  Score=95.55  Aligned_cols=79  Identities=18%  Similarity=0.439  Sum_probs=74.5

Q ss_pred             cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      ...|.|.|+..+|+.+.+++.+++|+..||.+++++.|+|++.|+|+|+|+.|+++.|+.+|++.+|++|++.++..+|
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999999887664

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.53  E-value=1.6e-14  Score=94.11  Aligned_cols=64  Identities=30%  Similarity=0.372  Sum_probs=58.3

Q ss_pred             ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccccc-CCccccccccc-cccceeeee
Q 026940            7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL   71 (230)
Q Consensus         7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~-d~~tl~~~~i~-~~~~i~l~~   71 (230)
                      ...|.++.+++++++||++||++|+..+|+||++|+| |+|+.|. |+.+|++||+. +|+++++.+
T Consensus         9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            3468999999999999999999999999999999999 9998885 66999999998 889998864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.52  E-value=3.4e-14  Score=92.57  Aligned_cols=66  Identities=29%  Similarity=0.346  Sum_probs=59.6

Q ss_pred             EEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeec-CCCCcccccCCC-CCCEEEEEE
Q 026940          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ-KESTLHLVL  223 (230)
Q Consensus       157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L-~d~~tL~~~~i~-~~~~i~l~~  223 (230)
                      =+...|.++.+++++++||++||++|++++|+|+++|+| |+|+.| +|+.+|++||++ +|+++++.+
T Consensus         7 ~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           7 DAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             ccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            344568899999999999999999999999999999999 999888 477999999998 889999865

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.49  E-value=6.8e-14  Score=88.71  Aligned_cols=64  Identities=61%  Similarity=0.864  Sum_probs=59.8

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES  217 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~  217 (230)
                      |.|+|+..+ +.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++||+++|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            467888877 7899999999999999999999999999999999999999999999999999985

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.48  E-value=4.1e-14  Score=90.81  Aligned_cols=54  Identities=31%  Similarity=0.553  Sum_probs=49.4

Q ss_pred             ccccHHHHHHHhcccc--CCC-CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          171 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       171 ~~~tV~~lK~~i~~~~--~~~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .++||.+||++|+++.  |++ +++|+|+|.|+.|+|++||++|||++|++|+++.+
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~   75 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK   75 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence            4789999999999996  574 89999999999999999999999999999999863

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.47  E-value=1.1e-13  Score=116.39  Aligned_cols=73  Identities=30%  Similarity=0.601  Sum_probs=70.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+||++.|++|.++|++++||.+||++|+...|   +|+++|+|+|+|+.|+|+++|++|+|++++.|++.+..
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            89999999999999999999999999999999999   99999999999999999999999999999998887754

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.45  E-value=1.3e-13  Score=91.47  Aligned_cols=62  Identities=27%  Similarity=0.326  Sum_probs=57.5

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeeeeee
Q 026940           12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~~~~   73 (230)
                      ..+++|++++||.+||.+|.+.+++||.+|+|.++|+.|.|+ +||++||+.++++++|.++.
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            567889999999999999999999999999999999998865 89999999999999998753

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.43  E-value=3.2e-13  Score=113.49  Aligned_cols=73  Identities=30%  Similarity=0.601  Sum_probs=69.5

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccC---CCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~---~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      |+|+|++..|+++.++|++++||.+||++|+...|   +|+++|+|+|+|+.|+|+++|++|+|+++++|++++..
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            67999999999999999999999999999999998   99999999999999999999999999999999988764

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.39  E-value=5.6e-13  Score=112.47  Aligned_cols=74  Identities=36%  Similarity=0.565  Sum_probs=69.8

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      .+.|+|++.++ ++.+.|..+.||.+||+.|..+++.++++++|+|.|++|+|+.||..|||+||.||||++|..
T Consensus        15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            36788888777 899999999999999999999999999999999999999999999999999999999999965

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.37  E-value=8.8e-13  Score=84.68  Aligned_cols=53  Identities=32%  Similarity=0.547  Sum_probs=48.4

Q ss_pred             CCChHHHHHHHHHhHh--CCC-CCCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940           95 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        95 ~~~tV~~lK~~i~~~~--~i~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  147 (230)
                      .++||++||++|+++.  +++ +++|+|+|.|+.|+|+.+|++|+|++|++|+++.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            4679999999999996  465 8899999999999999999999999999999874

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.37  E-value=1.8e-12  Score=83.38  Aligned_cols=67  Identities=67%  Similarity=0.992  Sum_probs=63.2

Q ss_pred             EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |+..+|+.+.+++++++||.+||++|+..+|+|+++|+|.|+|+.|+|+.+|++|++.+++.+++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            6777899999999999999999999999999999999999999999999999999999999988753

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.36  E-value=1.7e-12  Score=83.43  Aligned_cols=67  Identities=67%  Similarity=0.992  Sum_probs=62.4

Q ss_pred             EEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      |+..+|+.+.+.+++++||.+||++|++.+|+|++.|+|.|+|+.|+|+.+|.+|++.+|++|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            4556788999999999999999999999999999999999999999999999999999999998864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.36  E-value=1.3e-12  Score=89.47  Aligned_cols=77  Identities=23%  Similarity=0.317  Sum_probs=65.5

Q ss_pred             CceeeEEEeccCeeE-eeecCCCChHHHHHHHHHhHh-----CCC--CCCcEEEecCcccCCCccHhhhc------cccC
Q 026940           75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE  140 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~-~i~v~~~~tV~~lK~~i~~~~-----~i~--~~~q~L~~~g~~L~d~~tL~~~~------i~~~  140 (230)
                      +.+.|.++..+|..+ +..+++++||++||++|++.+     ++|  ++.|+|+|.|+.|+|+.||++|+      +...
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~   82 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV   82 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence            346788888999655 788999999999999999666     344  99999999999999999999999      6666


Q ss_pred             CceEEEEEeec
Q 026940          141 STLHLVLRLRG  151 (230)
Q Consensus       141 ~~i~l~~~~~~  151 (230)
                      .++|++++++.
T Consensus        83 ~TmHvvlr~~~   93 (113)
T cd01814          83 ITMHVVVQPPL   93 (113)
T ss_pred             eEEEEEecCCC
Confidence            88888887653

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.34  E-value=5.4e-12  Score=81.99  Aligned_cols=71  Identities=34%  Similarity=0.633  Sum_probs=65.0

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      |+|.|+..+|+.+.+.+.+++++..|++.++++.|+|+ +.++|.|+|+.|+++.|+++||+++|++|.+.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            57889999999999999999999999999999999999 999999999999999999999999999999864

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.34  E-value=2.4e-12  Score=85.58  Aligned_cols=62  Identities=27%  Similarity=0.328  Sum_probs=57.4

Q ss_pred             eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeec-CCCCcccccCCCCCCEEEEEEEe
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L-~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      ...++|++++||.+||..|...+++||..|+|+++|+.| +|++||++|||.+++.|++.+..
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            457889999999999999999999999999999999988 57889999999999999998863

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.32  E-value=1.5e-12  Score=89.21  Aligned_cols=73  Identities=27%  Similarity=0.373  Sum_probs=63.2

Q ss_pred             EEEEEccCCc-EEEEEecCCCcHHHHHHHhh-----hhhCCC--CCceEEEeccccccCCccccccc------cccccce
Q 026940            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL   67 (230)
Q Consensus         2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~-----~~~gi~--~~~q~l~~~g~~l~d~~tl~~~~------i~~~~~i   67 (230)
                      .|.++..+|. .=+..+++++||++||++|+     .+.|+|  +++|+|+|+|+.|+|++||++|+      +....++
T Consensus         6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm   85 (113)
T cd01814           6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM   85 (113)
T ss_pred             EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence            4677777884 45788999999999999999     555666  99999999999999999999999      6777899


Q ss_pred             eeeeeec
Q 026940           68 HLVLRLR   74 (230)
Q Consensus        68 ~l~~~~~   74 (230)
                      |+++++.
T Consensus        86 Hvvlr~~   92 (113)
T cd01814          86 HVVVQPP   92 (113)
T ss_pred             EEEecCC
Confidence            9998874

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.28  E-value=1.7e-11  Score=79.65  Aligned_cols=71  Identities=34%  Similarity=0.633  Sum_probs=65.1

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  147 (230)
                      |+|+++..+|+.+.+.+.+++++..|++.++++.++|+ +.++|+|+|+.|+++.|++++|+.+|++|++.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            57889999999999999999999999999999999999 999999999999999999999999999998863

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.23  E-value=1.2e-11  Score=104.60  Aligned_cols=73  Identities=37%  Similarity=0.592  Sum_probs=69.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      ++|+||+.++ .+.+.|..+.||.+||++|...+++|+++|+|+|.|+.|.|+.||..|||.+|.+|||+++..
T Consensus        16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            4799999976 999999999999999999999999999999999999999999999999999999999998753

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.21  E-value=2.4e-11  Score=97.78  Aligned_cols=74  Identities=38%  Similarity=0.657  Sum_probs=69.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |.|+||++.|..|++++.|++||.++|.+|+...|  .|.++|.|+|+|+.|.|+.++.+|++..+..+.+.+.-.
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            89999999999999999999999999999999999  999999999999999999999999999998877766543

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.19  E-value=8.9e-11  Score=78.33  Aligned_cols=70  Identities=21%  Similarity=0.379  Sum_probs=57.6

Q ss_pred             EEEEEccC-CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccc-----cc-cCCccccccccccccceeeee
Q 026940            2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~-----~l-~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      .|+|++.. ......++++++||.+||++++..+|+||+.|+|. +.|+     .| +|..+|++||+.+|.+||+.-
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            46666643 23445569999999999999999999999999995 6776     35 567899999999999999874

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.15  E-value=2e-10  Score=76.63  Aligned_cols=69  Identities=22%  Similarity=0.385  Sum_probs=56.7

Q ss_pred             EEEEecc-CceeEEEeeccccHHHHHHHhccccCCCCCceEEE-EcCe-----ec-CCCCcccccCCCCCCEEEEEE
Q 026940          155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       155 i~v~~~~-~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g~-----~L-~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      |.|.... ....+..++++.||.+||++++..+|+|++.|+|. |.|.     .| +|.++|.+||+++|++|+++-
T Consensus         4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            4444332 33455669999999999999999999999999996 7776     45 688899999999999999863

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.13  E-value=1.2e-10  Score=93.83  Aligned_cols=74  Identities=38%  Similarity=0.657  Sum_probs=70.6

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  150 (230)
                      |+|+||++.++.|.+++.+++||.++|.+|....|  +|++.|+|+|+|+.|.|+.++.+|++.+++.|.+++...
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            68999999999999999999999999999999999  999999999999999999999999999999998887665

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=99.11  E-value=2.1e-10  Score=78.29  Aligned_cols=72  Identities=31%  Similarity=0.464  Sum_probs=61.8

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccccc-------ccceeeeee
Q 026940            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~-------~~~i~l~~~   72 (230)
                      |.+|+.....+ ++.++..++.||.+||++|+.....||+.|+|+..++.|+|++||++||+.+       ..++.|.++
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence            77888887655 7889999999999999999999999999999997778899999999999943       445555544

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=99.10  E-value=3.5e-10  Score=77.22  Aligned_cols=71  Identities=30%  Similarity=0.419  Sum_probs=62.9

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCC-------CCCCEEEEEEEecCCCC
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRGGDF  230 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i-------~~~~~i~l~~~~~gg~~  230 (230)
                      ++..++.+.+.++.||.+||++|+.....||+.|+|+..+.+|+|++||++||+       +.-+++-|.+|...|.|
T Consensus         9 R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f   86 (119)
T cd01788           9 RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF   86 (119)
T ss_pred             ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence            445578889999999999999999999999999999977788999999999999       67889999999776754

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.09  E-value=5.2e-10  Score=75.31  Aligned_cols=70  Identities=26%  Similarity=0.490  Sum_probs=57.3

Q ss_pred             EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec----c---c-cccCCccccccccccccceeeee
Q 026940            2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---K-QLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~----g---~-~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      .|+|.+..-  ......+++++||.+||.+|+..+|+||+.|+|.+.    +   . ..+|..+|++||+.+|.+||+.-
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D   82 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD   82 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence            567777654  488999999999999999999999999999999975    1   2 23567999999999999998864

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.07  E-value=6.4e-10  Score=74.87  Aligned_cols=69  Identities=28%  Similarity=0.571  Sum_probs=55.4

Q ss_pred             eEEEEeccC--ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEc----C---eec-CCCCcccccCCCCCCEEEEE
Q 026940          154 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       154 ~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~----g---~~L-~d~~tL~~~~i~~~~~i~l~  222 (230)
                      .|.|.....  ...+..++++.||++||.+++..+|+|++.|+|.+.    +   ..+ +|..+|.+||+++|++|++.
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            455555444  478899999999999999999999999999999854    1   234 57899999999999999875

>PLN02560 enoyl-CoA reductase

Probab=99.00  E-value=1e-09  Score=90.30  Aligned_cols=70  Identities=31%  Similarity=0.544  Sum_probs=62.6

Q ss_pred             CEEEEEccCCcEE---EEEecCCCcHHHHHHHhhhhhCC-CCCceEEEec---c----ccccCCccccccccccccceee
Q 026940            1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~~~---~~~v~~~~tv~~lK~~i~~~~gi-~~~~q~l~~~---g----~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      |+|.|+..+|+.+   ++++++++||+|||.+|++..++ ++++|+|.+.   |    ..|+|+++|+++|+.+++++++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            8999999989887   79999999999999999999987 8999999973   3    3788999999999999998776


Q ss_pred             e
Q 026940           70 V   70 (230)
Q Consensus        70 ~   70 (230)
                      -
T Consensus        81 k   81 (308)
T PLN02560         81 K   81 (308)
T ss_pred             E
Confidence            3

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.95  E-value=4.6e-09  Score=65.97  Aligned_cols=72  Identities=28%  Similarity=0.404  Sum_probs=64.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec---c--ccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~---g--~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      ++|+|+-.++....+.|+|..+|.++|++|....|++- .|+|.|+   |  +.|.+..+|++|||-.+..|.++...
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~   77 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF   77 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence            57999999999999999999999999999999999998 8999996   2  56888999999999999888887554

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.95  E-value=8.3e-09  Score=66.62  Aligned_cols=73  Identities=84%  Similarity=1.145  Sum_probs=67.7

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      +++....|+.+.+.+.+..+|..+|.+|+...|+|++.|++.+.|+.|.|+.++.+|+|..++++++..++++
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~   74 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG   74 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence            3455678999999999999999999999999999999999999999999999999999999999999998764

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.94  E-value=5.6e-09  Score=67.46  Aligned_cols=72  Identities=83%  Similarity=1.130  Sum_probs=67.5

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      +++....|+.+.+++.+..+|..+|.+|+...|+|+.+|++.+.|+.|.|..++.+|+|..++++++..++.
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence            567788999999999999999999999999999999999999999999999999999999999999887653

>PLN02560 enoyl-CoA reductase

Probab=98.90  E-value=3.5e-09  Score=87.19  Aligned_cols=69  Identities=32%  Similarity=0.560  Sum_probs=59.8

Q ss_pred             eeEEEEeccCcee---EEEeeccccHHHHHHHhccccCC-CCCceEEEEc---C----eecCCCCcccccCCCCCCEEEE
Q 026940          153 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~---~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~L~~~---g----~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      |.|.|+..+|+.+   ++++++++||++||++|+++.+. ++++|||.+.   |    ..|+|+++|++||+++|++|++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            4677887778876   79999999999999999999986 8999999973   3    4788999999999999999865

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.83  E-value=1.5e-08  Score=70.85  Aligned_cols=74  Identities=30%  Similarity=0.498  Sum_probs=55.8

Q ss_pred             ceeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhC-------CCCCCcEEEecCcccCCCccHhhhccccCC------
Q 026940           76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------  141 (230)
Q Consensus        76 ~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~-------i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~------  141 (230)
                      .+.+.++..+|. ..++.+++++||++||+.|...+.       ..++..+|+|.|+.|+|+.+|+++.+..++      
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~   81 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT   81 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence            356777778998 789999999999999999998763       235678999999999999999999988766      


Q ss_pred             ceEEEEEe
Q 026940          142 TLHLVLRL  149 (230)
Q Consensus       142 ~i~l~~~~  149 (230)
                      ++|++++.
T Consensus        82 vmHlvvrp   89 (111)
T PF13881_consen   82 VMHLVVRP   89 (111)
T ss_dssp             EEEEEE-S
T ss_pred             EEEEEecC
Confidence            45666554

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=5e-09  Score=95.43  Aligned_cols=74  Identities=34%  Similarity=0.579  Sum_probs=70.7

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~   76 (230)
                      .|.||+++.++.++.|+..+||.++|+.|....+|+.+.||++|+|+.|.|++++.+|++ +|-+|||+.++++.
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~   77 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ   77 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence            488999999999999999999999999999999999999999999999999999999999 99999999988654

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.78  E-value=1.5e-08  Score=66.57  Aligned_cols=52  Identities=29%  Similarity=0.379  Sum_probs=46.9

Q ss_pred             eccccHHHHHHHhccccC-CCCCceEEE--EcCeecCCCCcccccCCCCCCEEEE
Q 026940          170 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       170 ~~~~tV~~lK~~i~~~~~-~~~~~q~L~--~~g~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      ++++||.+||..|++..+ .++++|+|.  +.|+.|.|+.+|.+||+++|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            578899999999999886 588999986  7899999999999999999999876

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.74  E-value=3.3e-08  Score=65.05  Aligned_cols=69  Identities=28%  Similarity=0.397  Sum_probs=44.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec---cccc--cCCccccccccccccceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~---g~~l--~d~~tl~~~~i~~~~~i~l~   70 (230)
                      |-|.|++.+ ..+.+++++++|+.+|+++|++.+++|++.|.|+.+   ...+  .+..+|+++||+.|+.+++.
T Consensus         5 milRvrS~d-G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    5 MILRVRSKD-GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             -EEEEE-SS-EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             EEEEEECCC-CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            567888876 577789999999999999999999999999998764   2344  46789999999999998874

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.73  E-value=3.3e-08  Score=64.87  Aligned_cols=68  Identities=26%  Similarity=0.318  Sum_probs=53.1

Q ss_pred             EEEEEccC-CcEEEEEe-cCCCcHHHHHHHhhhhhC-CCCCceEEE--eccccccCCccccccccccccceee
Q 026940            2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~-g~~~~~~v-~~~~tv~~lK~~i~~~~g-i~~~~q~l~--~~g~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      .|.++..+ .....+++ ++++||.+||..|+...+ +++++|+|.  +.|+.|.|+.+|+++|+.+|+++++
T Consensus         2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801           2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            34555554 23322444 588999999999999976 578999997  5789999999999999999998775

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.67  E-value=3e-07  Score=64.25  Aligned_cols=72  Identities=31%  Similarity=0.505  Sum_probs=52.8

Q ss_pred             eEEEEeccCc-eeEEEeeccccHHHHHHHhccccC-------CCCCceEEEEcCeecCCCCcccccCCCCCC------EE
Q 026940          154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL  219 (230)
Q Consensus       154 ~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~-------~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~------~i  219 (230)
                      .+.....+|. ..++.+++++||.+||+.|...+.       ..++.+||+|.|+.|+|+.||+++.+..|+      ++
T Consensus         4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm   83 (111)
T PF13881_consen    4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM   83 (111)
T ss_dssp             EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred             EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence            3444455777 788999999999999999998773       235679999999999999999999998776      46


Q ss_pred             EEEEEe
Q 026940          220 HLVLRL  225 (230)
Q Consensus       220 ~l~~~~  225 (230)
                      |++++.
T Consensus        84 Hlvvrp   89 (111)
T PF13881_consen   84 HLVVRP   89 (111)
T ss_dssp             EEEE-S
T ss_pred             EEEecC
Confidence            666653

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.5e-08  Score=90.08  Aligned_cols=74  Identities=34%  Similarity=0.579  Sum_probs=70.2

Q ss_pred             eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      .|+||+++.++.++.+...+||.+||..|.++..|+.+.||++|.|+.|.|++++++|++ +|-+||++-|.+.+
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~   77 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ   77 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence            488999999999999999999999999999999999999999999999999999999999 99999999886644

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.56  E-value=1.3e-07  Score=62.16  Aligned_cols=70  Identities=29%  Similarity=0.430  Sum_probs=42.1

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC---eec--CCCCcccccCCCCCCEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g---~~L--~d~~tL~~~~i~~~~~i~l~  222 (230)
                      .|-|.|++.+| .+.+++++++|+.+|+++|++..++|.+.+.|..+.   ..+  .++++|+++|++.||.|++.
T Consensus         4 ~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    4 SMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             --EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             cEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            45566776554 557789999999999999999999999999886322   345  46889999999999999874

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=8.4e-07  Score=59.43  Aligned_cols=78  Identities=17%  Similarity=0.411  Sum_probs=71.7

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      -+++.|+..++....+.+..+++...|+...+++.|++.+..|+.|+|+.+.+..|-.+.+.++|+.|.++..+.||.
T Consensus        20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~   97 (99)
T KOG1769|consen   20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF   97 (99)
T ss_pred             eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence            355666666778889999999999999999999999999999999999999999999999999999999999999885

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3.8e-08  Score=59.93  Aligned_cols=69  Identities=26%  Similarity=0.390  Sum_probs=61.3

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      +.++.+-|+...+.+++++||+++|+.|+..+|..++...|.-.+..++|+-+|++|.|.+|..+.+..
T Consensus         4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy   72 (73)
T KOG3493|consen    4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY   72 (73)
T ss_pred             ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence            445556689999999999999999999999999999999888667788999999999999999888764

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.46  E-value=1.3e-06  Score=55.07  Aligned_cols=71  Identities=27%  Similarity=0.366  Sum_probs=60.8

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC-----cccCCCccHhhhccccCCceEEEEE
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-----~~L~d~~tL~~~~i~~~~~i~l~~~  148 (230)
                      ++|+|+..++....+.|+|..+|..+|++|....+++- .|+|.|..     +.|.+..+|++|||-.+..|.++-.
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT   76 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET   76 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence            46888888899999999999999999999999999875 89998732     4578999999999998777766544

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.46  E-value=7.4e-07  Score=55.19  Aligned_cols=64  Identities=45%  Similarity=0.670  Sum_probs=58.4

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      .++....+.+.++.|+.++|+.++.++|.+++.+.|.++|..+++...+.+|++.++++|++..
T Consensus         5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            3677888889999999999999999999999999999999999988888899999999998764

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.45  E-value=7.2e-07  Score=55.23  Aligned_cols=66  Identities=45%  Similarity=0.659  Sum_probs=59.4

Q ss_pred             EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +..+|....+.+.+++|++++|+++...+|+++..|.|+++|..+.+...+..+++.+++.+++..
T Consensus         3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            344688999999999999999999999999999999999999999988888899999999988753

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=98.39  E-value=5.6e-07  Score=59.39  Aligned_cols=65  Identities=28%  Similarity=0.432  Sum_probs=55.3

Q ss_pred             CEEEEEccCC-cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-cc-ccccCCcccccccccccc
Q 026940            1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQKES   65 (230)
Q Consensus         1 m~v~v~~~~g-~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g-~~l~d~~tl~~~~i~~~~   65 (230)
                      |.+|++.... .++.++..++.||.+||++++....-|+..|+|+. .. +.|+|.+||+++|..+..
T Consensus         1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~   68 (110)
T KOG4495|consen    1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQT   68 (110)
T ss_pred             CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccc
Confidence            5677776654 46788999999999999999999999999999997 43 789999999999986543

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=8.7e-06  Score=54.62  Aligned_cols=78  Identities=17%  Similarity=0.427  Sum_probs=70.4

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      ..+.+.|...++....+.+..+++...|....+++.|++.+..+++|+|+.+.+..|..+.++.+|+.|.++....+|
T Consensus        19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG   96 (99)
T KOG1769|consen   19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG   96 (99)
T ss_pred             ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence            446677777777888999999999999999999999999999999999999999999999999999999988776655

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.8e-06  Score=69.53  Aligned_cols=73  Identities=32%  Similarity=0.604  Sum_probs=64.8

Q ss_pred             CEEEEEcc---CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee-eee
Q 026940            1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL   73 (230)
Q Consensus         1 m~v~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~-~~~   73 (230)
                      |.++|+..   ....++++|+.+.+|.+||+.|..+.|+|+.+-+++|.|++|.++.+++.+.+...+.+|+. ++|
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence            67788765   23578999999999999999999999999999999999999999999999999999988875 454

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=2.4e-06  Score=72.43  Aligned_cols=70  Identities=24%  Similarity=0.437  Sum_probs=63.7

Q ss_pred             eEEEEeccCceeEEE-eeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          154 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .|.|+ +.|+.|+++ ++.++|+..||+++...+|+||++|+++..|+.+.|+-.+...+|++|.+++|+-.
T Consensus         5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt   75 (473)
T KOG1872|consen    5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT   75 (473)
T ss_pred             eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence            35555 788999988 99999999999999999999999999999999999988899999999999988754

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=5.2e-07  Score=55.00  Aligned_cols=69  Identities=26%  Similarity=0.398  Sum_probs=60.5

Q ss_pred             eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  146 (230)
                      .+.++..-|+...+.+++++||+++|..|+.++|-.++...|.-.+....|.-+|++|.|.+|..+.+.
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence            455566678999999999999999999999999999999988877788899999999999998877653

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=4.2e-06  Score=70.99  Aligned_cols=70  Identities=23%  Similarity=0.416  Sum_probs=63.4

Q ss_pred             EEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            3 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         3 v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.| -+.|+.++++ ++.++|+..+|.++...+|+||++|++.+.|..+.|+..+...+|+++.+++|.-..
T Consensus         6 v~V-KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~   76 (473)
T KOG1872|consen    6 VIV-KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA   76 (473)
T ss_pred             Eee-eecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence            344 4578999998 999999999999999999999999999999999999999999999999999996543

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=98.00  E-value=2e-05  Score=49.44  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=47.3

Q ss_pred             eccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026940          159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       159 ~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      ..+++...+.+.+++++.++-+..++++|+.++...|.|+++.++-+.++.-.|+.+|+++.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            367889999999999999999999999999999999999999999999999999999999875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=7.2e-06  Score=53.59  Aligned_cols=79  Identities=16%  Similarity=0.354  Sum_probs=72.0

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      -+.+.|...++.+..+.+..+.|...|....+.+-|-..+..|+.|+|+..+.++|-.+++..+++.|..+...-||+.
T Consensus        24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~t  102 (103)
T COG5227          24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGAT  102 (103)
T ss_pred             ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCcc
Confidence            3556667778889999999999999999999999999999999999999999999999999999999999888888863

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.95  E-value=8.2e-06  Score=53.96  Aligned_cols=54  Identities=30%  Similarity=0.378  Sum_probs=47.4

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE-cC-eecCCCCcccccCC
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNI  213 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~-~g-~~L~d~~tL~~~~i  213 (230)
                      ++..++.+..+++.||.+||.+++....-|++.|+|.. .- ..|+|.+||+++|.
T Consensus         9 R~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf   64 (110)
T KOG4495|consen    9 RHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF   64 (110)
T ss_pred             ecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence            45567889999999999999999999999999999985 33 67899999999976

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=2.7e-05  Score=62.88  Aligned_cols=60  Identities=32%  Similarity=0.648  Sum_probs=54.4

Q ss_pred             ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940          163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       163 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  222 (230)
                      ..++++|+.+..|.+||+.++++.|+|+++.+++|.|++|.|+.+++.+.+.-.+.++++
T Consensus        14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen   14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence            457888999999999999999999999999999999999999999998888777777665

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.85  E-value=5.1e-05  Score=49.91  Aligned_cols=68  Identities=22%  Similarity=0.378  Sum_probs=48.5

Q ss_pred             eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC---C---ceEEE-EcCeecCCCCcccccCCCCCCEEEE
Q 026940          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~---~---~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      .|.|...+++.+.+.++.+.+|.+|...+.+..+.+.   .   ...|. -+|..|+++.+|+++||.+|+.+++
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            4556655568999999999999999999988877522   2   24555 6788999999999999999999976

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.81  E-value=9.2e-05  Score=46.47  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEE
Q 026940           83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  145 (230)
Q Consensus        83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l  145 (230)
                      ..+++.+.+.+.+++++.++-+..++++++.++...|.|+++.++-+.++.-.|+.+|+.+.+
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            467889999999999999999999999999999999999999999999999999999998764

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.69  E-value=0.00011  Score=48.23  Aligned_cols=68  Identities=22%  Similarity=0.396  Sum_probs=48.7

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc------eEEE-eccccccCCccccccccccccceee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~------q~l~-~~g~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      +|+|...+|+.+.+.++.+.+|++|...+.+..+.+...      ..|. ..|..|+++.||+++|+.+|+.+.+
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            567766557899999999999999999999999875532      2344 4588999999999999999999876

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.62  E-value=0.00052  Score=45.33  Aligned_cols=71  Identities=23%  Similarity=0.335  Sum_probs=59.0

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCc-eEEE--EcCeecCC--CCcccccCCCCCCEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLED--GRTLADYNIQKESTLHLV  222 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~-q~L~--~~g~~L~d--~~tL~~~~i~~~~~i~l~  222 (230)
                      ...|.++.++|+.+.-.+..++|+.+|..-|......+... +.|+  |..+.+.+  ++||++.|+.++++|++.
T Consensus         6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            35678888999999999999999999999998887766654 7776  67777753  379999999999999763

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.54  E-value=0.00056  Score=50.61  Aligned_cols=76  Identities=30%  Similarity=0.523  Sum_probs=58.4

Q ss_pred             eeEEEEeccC----ceeEEEeeccccHHHHHHHhccccCCCCCce-EEEE-cCeec--CCCCcccccCCCCC----CEEE
Q 026940          153 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH  220 (230)
Q Consensus       153 ~~i~v~~~~~----~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q-~L~~-~g~~L--~d~~tL~~~~i~~~----~~i~  220 (230)
                      |+|.|.+.+|    .++.+.+++++||.+|+..|...++++...+ .|.. .++.+  .++..+..+.-.+.    -+++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            4688888888    5788889999999999999999999988874 4554 34444  45566666655444    3788


Q ss_pred             EEEEecCC
Q 026940          221 LVLRLRGG  228 (230)
Q Consensus       221 l~~~~~gg  228 (230)
                      +..++.||
T Consensus        81 l~~rl~GG   88 (162)
T PF13019_consen   81 LSLRLRGG   88 (162)
T ss_pred             EEEeccCC
Confidence            99999998

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.48  E-value=0.00064  Score=44.74  Aligned_cols=69  Identities=22%  Similarity=0.251  Sum_probs=57.1

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecCC---CCcccccCCCCCCEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l  221 (230)
                      ..|.|+.++|+.+...++.++|+.++.+-|....+.....+.|.  |..+.+.+   ++||.+.|+-+++++.+
T Consensus         5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            46788889999999999999999999999966666666677876  67777743   57999999999998865

Present in FAF1 and Shp1p.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=97.30  E-value=0.0017  Score=42.58  Aligned_cols=68  Identities=16%  Similarity=0.317  Sum_probs=56.1

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecCC---CCcccccCCCCCCEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l  221 (230)
                      ..|.++.++|+...-.++.++|+.++.+-|....+-+ ..+.|+  |..+.+.+   ++||.+.|+.+.++|.+
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            4678888999999999999999999999998765433 556676  78888853   58999999999999876

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.26  E-value=0.0025  Score=41.93  Aligned_cols=71  Identities=21%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--ecCcccCC---CccHhhhccccCCceEE
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  145 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~~i~~~~~i~l  145 (230)
                      +...|.|+.++|..+.-.++.++|+.+|.+-+....+.......|.  |..+.+.+   +.||.+.|+.+++++.+
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            3457888999999999999999999999999976666666677776  56677753   47999999988887754

Present in FAF1 and Shp1p.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.25  E-value=0.0025  Score=42.01  Aligned_cols=68  Identities=24%  Similarity=0.361  Sum_probs=56.5

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEE--eccccccCC--ccccccccccccceee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~--~~g~~l~d~--~tl~~~~i~~~~~i~l   69 (230)
                      +|-|+..+|..+.-.+.+++||.+|...|......+... -.|.  |-.+.+.+.  .||++.|+.+.+++++
T Consensus         8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            578999999999999999999999999999998887764 4554  345666544  6999999999988876

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=97.20  E-value=0.0029  Score=41.27  Aligned_cols=67  Identities=15%  Similarity=0.258  Sum_probs=52.8

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l  221 (230)
                      ..|.++.++|+...-.++.++|+.+|.+-|.....- ...+.|.  |..+.+.   .+.||.+.|+.+ +.+.+
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~   74 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ   74 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence            457888899999999999999999999999876543 5556776  6777774   488999999995 44433

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.19  E-value=0.0024  Score=47.32  Aligned_cols=64  Identities=22%  Similarity=0.412  Sum_probs=49.5

Q ss_pred             CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCce-EEEec-cccc--cCCccccccccccc
Q 026940            1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE   64 (230)
Q Consensus         1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~l~~~-g~~l--~d~~tl~~~~i~~~   64 (230)
                      |.|+|.+++|    .++.+.++++.||.+|+..|....++|+..| .|++. ++.+  .++..++.+.-.+.
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~   72 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ   72 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence            7899999999    6899999999999999999999999999885 45553 4455  34455555544333

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=97.16  E-value=0.0022  Score=42.03  Aligned_cols=67  Identities=21%  Similarity=0.317  Sum_probs=53.8

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCC-CCCceEEE--EcCeec-CCCCcccccCCCCCCEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL  219 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~-~~~~q~L~--~~g~~L-~d~~tL~~~~i~~~~~i  219 (230)
                      ..|.|+..+|+.....++.++||.+|.+-|....+- ....+.|.  |..+.+ +++.||.+.|+.+...+
T Consensus         5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            568888999999999999999999999999887643 23557776  778878 45889999999974433

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=97.14  E-value=0.0038  Score=39.55  Aligned_cols=67  Identities=18%  Similarity=0.225  Sum_probs=54.0

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCC--CC---CceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~--~~---~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      +-.+..+|.++.+.++...++..|-..+.+...+  ++   +.++..-+++.|.++..|.+|||.+|+.+.+
T Consensus         9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            3445677999999999999998888877766543  22   3567778999999999999999999998864

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=97.12  E-value=0.0039  Score=41.01  Aligned_cols=71  Identities=17%  Similarity=0.326  Sum_probs=60.3

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..|.++.++|+...-.+..++++.+|-.-+.. .|.+++.+.|+  |..+.+.   -+.||.+.|+.+..++.+--|
T Consensus         6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r   81 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER   81 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence            46788889999999999999999999999988 47788889887  7777773   357999999999999987543

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=97.09  E-value=0.004  Score=41.44  Aligned_cols=70  Identities=13%  Similarity=0.224  Sum_probs=56.8

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC--------CCCcccccCCCCCCEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL  221 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~--------d~~tL~~~~i~~~~~i~l  221 (230)
                      ..+|.++.++|+...-.+..++|+++|..-|... +..++.+.|+  |..+.+.        .+.||++.|+.+..++.+
T Consensus         4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V   82 (85)
T cd01774           4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV   82 (85)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence            4578888899999999999999999999999643 5566788887  5557774        367999999999888866


Q ss_pred             E
Q 026940          222 V  222 (230)
Q Consensus       222 ~  222 (230)
                      .
T Consensus        83 ~   83 (85)
T cd01774          83 Q   83 (85)
T ss_pred             e
Confidence            3

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0027  Score=41.75  Aligned_cols=72  Identities=15%  Similarity=0.354  Sum_probs=64.7

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  147 (230)
                      .+.+.|...+|..+.+.+..+++...|-...+.+.|-..+..|++|+|+.++.++|..++++.+++.|.++.
T Consensus        24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~   95 (103)
T COG5227          24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT   95 (103)
T ss_pred             ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence            466667667888999999999999999999999999999999999999999999999999999999876543

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=97.04  E-value=0.0011  Score=52.14  Aligned_cols=69  Identities=28%  Similarity=0.406  Sum_probs=53.2

Q ss_pred             CEEEEEccCCc-EEE-EEecCCCcHHHHHHHh-hhhhCCCCCceEEEe----ccccccCCccccccccccccceee
Q 026940            1 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKI-QDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~-~~~-~~v~~~~tv~~lK~~i-~~~~gi~~~~q~l~~----~g~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      |.|++.+.+++ ... ...+..+|++|++.++ ++...+.+.++++.+    .|+.|-|+.+|++|+..++.++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            78999998763 333 5677788999999555 555678886666554    489999999999999999977665

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=97.02  E-value=0.0053  Score=40.33  Aligned_cols=70  Identities=20%  Similarity=0.292  Sum_probs=58.9

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~  222 (230)
                      ...|.++.++|+...-.+..++++++|-.-|... |.++..++|+  |..+.+.   .+.||.+.|+.+..+|.+-
T Consensus         4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            3567888889999999999999999999999875 7777888887  7778773   3579999999999998764

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.0011  Score=50.74  Aligned_cols=63  Identities=29%  Similarity=0.448  Sum_probs=57.3

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      .++.|.+.+..-+|+.++|.+++...|+.+..|+++++|..+.+...|..|++..+....+.+
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv  217 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV  217 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence            357788889999999999999999999999999999999999999999999999997766544

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=96.98  E-value=0.0052  Score=40.28  Aligned_cols=67  Identities=16%  Similarity=0.316  Sum_probs=52.6

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--eccccccC---Cccccccccccccceee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d---~~tl~~~~i~~~~~i~l   69 (230)
                      +|-|+..+|....-.++.++|+.+|.+.|....+-+. .-.|.  |-.+.+.+   +.||.+.|+.+..++.+
T Consensus         6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~-~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGG-PFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCC-CEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            5789999999999999999999999999997765442 23444  44566653   47999999998887765

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.97  E-value=0.0028  Score=43.20  Aligned_cols=50  Identities=24%  Similarity=0.362  Sum_probs=39.5

Q ss_pred             EeeecC--CCChHHHHHHHHHhHhC--CCCCCcEEEecCcccCCCccHhhhccc
Q 026940           89 ITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ  138 (230)
Q Consensus        89 ~~i~v~--~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~  138 (230)
                      ..++++  .+.||..||+.|.+..+  ..-.+++|+|+|+.|.|...|...-..
T Consensus        14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~   67 (97)
T PF10302_consen   14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKL   67 (97)
T ss_pred             ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhcc
Confidence            556666  78899999999999984  334568899999999998887765433

They contain a characteristic GFDRL sequence motif.

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=96.94  E-value=0.0077  Score=47.36  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=55.6

Q ss_pred             cEEEEEecCCCcHHHHHHHhhhhhCCCCC-ce--EEE--ecc---ccccCCccccccccccccceeeeeeecC-------
Q 026940           11 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQ--RLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLRG-------   75 (230)
Q Consensus        11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q--~l~--~~g---~~l~d~~tl~~~~i~~~~~i~l~~~~~~-------   75 (230)
                      ..+.+.++.+.||+||.+++..+.+++.+ .+  +++  +++   +.+..+.++.+.  .+...+.+-.-+.+       
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~  111 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE  111 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence            35788999999999999999999999875 33  333  234   345666667665  22222322211111       


Q ss_pred             ---ceeeEEEe-------ccCeeEeeecCCCChHHHHHHHHHhHhCCCC
Q 026940           76 ---GMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPP  114 (230)
Q Consensus        76 ---~~~v~v~~-------~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~  114 (230)
                         ...|.|.-       ..|-.|.+.+.+++|++++|++|++++|++-
T Consensus       112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~  160 (213)
T PF14533_consen  112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD  160 (213)
T ss_dssp             --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred             cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence               12333322       2467788999999999999999999999874

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=96.91  E-value=0.0081  Score=39.36  Aligned_cols=67  Identities=22%  Similarity=0.301  Sum_probs=53.2

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC-CCCCcEEE--ecCcccCC-CccHhhhccccCCc
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKEST  142 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~  142 (230)
                      ...|.|+..+|+.+.-.++.++||++|.+-|....+- ......|.  |-.+.+.| +.||.+.|+.+...
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v   74 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI   74 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence            4578899999999999999999999999999987643 23456676  66777754 77999999986443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=96.82  E-value=0.009  Score=38.89  Aligned_cols=63  Identities=19%  Similarity=0.330  Sum_probs=49.2

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--eccccccC---Ccccccccccccc
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKES   65 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d---~~tl~~~~i~~~~   65 (230)
                      +|-|+..+|....-.++.++||.+|.+.|.....- +..-.|.  |-.+.+.+   +.||.+.|+.+..
T Consensus         4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~   71 (77)
T cd01767           4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV   71 (77)
T ss_pred             EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence            57899999999999999999999999999887654 3334444  34566654   7899999999543

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=96.76  E-value=0.014  Score=38.85  Aligned_cols=70  Identities=11%  Similarity=0.185  Sum_probs=55.8

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe--cCcccC--------CCccHhhhccccCCceE
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--------DGRTLADYNIQKESTLH  144 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~--------d~~tL~~~~i~~~~~i~  144 (230)
                      +..+|.++.++|+...-.+..++|+.+|..-|.. .+..+....|+.  -.+.+.        .+.||++.|+.+.+++.
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~   81 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF   81 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence            3467889999999999999999999999999964 455667888874  346664        36799999999887775


Q ss_pred             E
Q 026940          145 L  145 (230)
Q Consensus       145 l  145 (230)
                      +
T Consensus        82 V   82 (85)
T cd01774          82 V   82 (85)
T ss_pred             E
Confidence            4

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=96.57  E-value=0.024  Score=37.28  Aligned_cols=69  Identities=14%  Similarity=0.272  Sum_probs=56.8

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe--cccccc---CCccccccccccccceeeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~---d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +|-|+..+|....-.+...+++.+|-..|.. .|.++....|+-  --+.+.   .+.||.+.|+.+..++.+-.
T Consensus         7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~   80 (82)
T cd01773           7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE   80 (82)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence            5889999999999999999999999999999 577887777773  344443   34799999999998887743

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=96.49  E-value=0.0042  Score=48.88  Aligned_cols=69  Identities=29%  Similarity=0.395  Sum_probs=48.2

Q ss_pred             eeEEEEeccCc-eeE-EEeeccccHHHHHHHhcccc-CCCCCceEE----EEcCeecCCCCcccccCCCCCCEEEE
Q 026940          153 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRL----IFAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~-i~v~~~~tV~~lK~~i~~~~-~~~~~~q~L----~~~g~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      |.|++.++++. ... ...+...|+.|+++.+..+. .+.+.++|+    .-+|+.+-|+.+|++||..+|++|++
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            34556655542 223 44556789999997776655 455544433    35789999999999999999988865

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=96.48  E-value=0.029  Score=36.85  Aligned_cols=70  Identities=20%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--ecCcccC---CCccHhhhccccCCceEEE
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~  146 (230)
                      ..+|.++.++|+...-.+..++++.+|-.-+... |.++...+|+  |-.+.+.   .+.||.+.|+.+..++.+-
T Consensus         4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            4578889999999999999999999999999875 7777788887  6667663   3579999999988887653

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=96.47  E-value=0.024  Score=37.71  Aligned_cols=67  Identities=19%  Similarity=0.253  Sum_probs=46.6

Q ss_pred             ceeEEEeeccccHHHHHHHhccccCCCCCceEEE-E---cC-eec-CCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940          163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F---AG-KQL-EDGRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       163 ~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~---~g-~~L-~d~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      ..++..+...+||..+...+.+.+.+ ....||- +   ++ ..| +.+.|+.+.|+.+|.+|.+-.|...|.|
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW   86 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW   86 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence            35677889999999999999999999 5556764 2   22 345 4568999999999999999999988864

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.46  E-value=0.016  Score=36.72  Aligned_cols=66  Identities=18%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-----CceEEEeccccccCCccccccccccccceee
Q 026940            4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-----~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      -++..+|.++.++++...++..+-..+.+...+..     .+-+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus        10 D~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417          10 DFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            34566899999999999999999999888876543     2234445688999999999999999998764

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.40  E-value=0.01  Score=40.46  Aligned_cols=59  Identities=20%  Similarity=0.299  Sum_probs=43.6

Q ss_pred             EEEEccC-CcEEEEEec--CCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCcccccccc
Q 026940            3 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNI   61 (230)
Q Consensus         3 v~v~~~~-g~~~~~~v~--~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~tl~~~~i   61 (230)
                      +.|+..+ -.-..++|+  ...||..||+.|.+..+  ..-.+++|+++|+.|.|...|+..-.
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~   66 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK   66 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence            3444443 234677777  77899999999999984  33367788899999999888876543

They contain a characteristic GFDRL sequence motif.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.0073  Score=46.31  Aligned_cols=62  Identities=29%  Similarity=0.445  Sum_probs=56.5

Q ss_pred             cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  146 (230)
                      .++.+.+.+...+|+.++|.+++...++.+..|+++++|..+-|...|..+++..|....+.
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq  216 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ  216 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence            56678889999999999999999999999999999999999999999999999999765544

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=96.24  E-value=0.022  Score=35.00  Aligned_cols=66  Identities=23%  Similarity=0.461  Sum_probs=51.7

Q ss_pred             cCceeEEEeeccccHHHHHHHhcccc---CCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~---~~~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      +|+...++.+.+....-..++--+..   |-|++...|. -+|..|+-++...|||+.+|-++++.++..
T Consensus         4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAG   73 (76)
T PF10790_consen    4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAG   73 (76)
T ss_pred             CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecc
Confidence            56777777777776666655554444   4688888887 688999999999999999999999988853

>PRK06437 hypothetical protein; Provisional

Probab=96.17  E-value=0.06  Score=34.02  Aligned_cols=59  Identities=20%  Similarity=0.404  Sum_probs=47.3

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .++...++++...||.+|-+.+    ++++....+..+|....     .++-+++||.|.++.-..||
T Consensus         9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG   67 (67)
T PRK06437          9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG   67 (67)
T ss_pred             CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence            4566778888889999887654    78888888889999887     66678999999888776665

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.02  Score=43.90  Aligned_cols=59  Identities=19%  Similarity=0.325  Sum_probs=50.1

Q ss_pred             eEEEeeccccHHHHHHHhccccCCCCCceEEE-EcC-----eec-CCCCcccccCCCCCCEEEEEE
Q 026940          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~-~~g-----~~L-~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      .....+++.|+++||.+++-.+|.+++.+.|. |.|     ..| +++..|..|...+|-.||++=
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD   80 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID   80 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence            45667789999999999999999999999987 666     355 467899999999999998764

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=95.92  E-value=0.043  Score=44.27  Aligned_cols=119  Identities=18%  Similarity=0.369  Sum_probs=81.5

Q ss_pred             EEEEEccCC--cEE----EEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc------ccccCCccccccccccccceee
Q 026940            2 QIFVKTLTG--KTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~g--~~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g------~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      -||+|..+-  .++    .+-|+.+++|.++-..|.+..|.|+....++|.-      ..++...|+....+.+|+.|.+
T Consensus        70 LlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~f  149 (249)
T PF12436_consen   70 LLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICF  149 (249)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEE
T ss_pred             EEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEE
Confidence            467777642  222    3468999999999999999999999888777752      5577889999999999999888


Q ss_pred             eeeec--------------------CceeeEEEec---cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026940           70 VLRLR--------------------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  120 (230)
Q Consensus        70 ~~~~~--------------------~~~~v~v~~~---~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~  120 (230)
                      -....                    ..+.|.++..   .+..|.+.++...|-.+|-++|+++.++.|...+|+
T Consensus       150 Q~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  150 QRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             EE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             EeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence            76442                    1266666542   345799999999999999999999999999999987

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=95.87  E-value=0.017  Score=37.51  Aligned_cols=57  Identities=23%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             eeccccHHHHHHHhccccC-CCCCceEEEEcCeecCCCCccccc-CCCCCCEEEEEEEe
Q 026940          169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL  225 (230)
Q Consensus       169 v~~~~tV~~lK~~i~~~~~-~~~~~q~L~~~g~~L~d~~tL~~~-~i~~~~~i~l~~~~  225 (230)
                      |.++++|.++++.+..... .....+.|.++|..|+|...|++. |+++|+++.++.+.
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence            4678899999999988765 456678899999999999999888 69999999988653

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=95.78  E-value=0.075  Score=42.84  Aligned_cols=107  Identities=17%  Similarity=0.349  Sum_probs=73.1

Q ss_pred             eeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC------cccCCCccHhhhccccCCceEEEEEeec------------
Q 026940           90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------  151 (230)
Q Consensus        90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~d~~tL~~~~i~~~~~i~l~~~~~~------------  151 (230)
                      .+-|+.+++|+++-..|.+..|+|++..-++|.-      ..++...++....+.+|+.|-+-.....            
T Consensus        88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~  167 (249)
T PF12436_consen   88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK  167 (249)
T ss_dssp             EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred             EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence            3567888999999999999999999877766643      3467789999999999998877664421            


Q ss_pred             --------ceeEEEEec---cCceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940          152 --------GMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  196 (230)
Q Consensus       152 --------~~~i~v~~~---~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~  196 (230)
                              .+.|..+..   .+..+.+.++..+|-.+|-+.|+++.++.|...||.
T Consensus       168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence                    144555542   234789999999999999999999999999999987

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=95.65  E-value=0.083  Score=41.55  Aligned_cols=103  Identities=20%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             eeEeeecCCCChHHHHHHHHHhHhCCCCC---CcEEE--ecCc---ccCCCccHhhhccccCCceEEEEEe------e--
Q 026940           87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R--  150 (230)
Q Consensus        87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~---~q~L~--~~g~---~L~d~~tL~~~~i~~~~~i~l~~~~------~--  150 (230)
                      +.+.+-++.+.||++|...++.+.+++.+   ..++.  ++++   .+..+.++.+.  .+...+.+-.-+      .  
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~  111 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE  111 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence            45788899999999999999999998765   44544  4553   45667777776  222233332111      1  


Q ss_pred             --cceeEEEEec-------cCceeEEEeeccccHHHHHHHhccccCCCCC
Q 026940          151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPD  191 (230)
Q Consensus       151 --~~~~i~v~~~-------~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~  191 (230)
                        +..-|.|...       .|-.+.+.+.+..|+.++|++|++++|++..
T Consensus       112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k  161 (213)
T PF14533_consen  112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK  161 (213)
T ss_dssp             --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred             cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence              1233444432       2566788899999999999999999998643

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.062  Score=41.24  Aligned_cols=61  Identities=18%  Similarity=0.293  Sum_probs=50.4

Q ss_pred             EeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecC-----cccC-CCccHhhhccccCCceEEEEEe
Q 026940           89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L~-d~~tL~~~~i~~~~~i~l~~~~  149 (230)
                      .....+++.||++||.+++-.+|.+++.+.|. |.|     ..|+ ++..|..|...+|-.||++-..
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~   82 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN   82 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence            45567889999999999999999999999987 555     2454 5778999999999999887543

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=95.35  E-value=0.13  Score=33.39  Aligned_cols=68  Identities=25%  Similarity=0.321  Sum_probs=51.1

Q ss_pred             EEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEE----cC--eecCCCCcccccCCC--CCCEEEEEEE
Q 026940          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLVLR  224 (230)
Q Consensus       157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~----~g--~~L~d~~tL~~~~i~--~~~~i~l~~~  224 (230)
                      |...+|....+++++++|+.+|=+.|+++.++.. +.+=|.+    +|  .-|+.+++|.++...  ...++++.+|
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk   77 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK   77 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence            4567889999999999999999999999999854 4456667    22  346788999999888  4445555443

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=95.34  E-value=0.26  Score=31.37  Aligned_cols=56  Identities=13%  Similarity=0.238  Sum_probs=44.0

Q ss_pred             eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...+++++..|+.+|-+.+    ++++....+..||.....     +.-+++||.|.++--..||
T Consensus        15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG   70 (70)
T PRK08364         15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG   70 (70)
T ss_pred             ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence            5677788889999998766    566676777789988853     5668999999888777766

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=94.98  E-value=0.099  Score=33.98  Aligned_cols=60  Identities=13%  Similarity=0.243  Sum_probs=46.0

Q ss_pred             eeEEEeeccccHHHHHHHhccccCC----CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~~----~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...++++...||.+|.+.+...++-    ......+..||+...     .+.-+++||.|.++-...||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence            3566777789999999999888642    234556668888776     44569999999998888777

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=94.94  E-value=0.082  Score=34.62  Aligned_cols=61  Identities=20%  Similarity=0.328  Sum_probs=44.0

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940           12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      .....++-.+++..||..++.+.|+.-+.-.++++...|+++++|.+.+++....+.+.+.
T Consensus         4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ   64 (88)
T PF11620_consen    4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ   64 (88)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred             eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence            4556778889999999999999999999999999987799999999999998888777653

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=94.84  E-value=0.24  Score=30.92  Aligned_cols=61  Identities=15%  Similarity=0.330  Sum_probs=44.9

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .+|+.+.+  + ..|+.+|.+.+    +++++...+..++..... ....+.-+++||.|.++--..||
T Consensus         5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG   65 (65)
T PRK06488          5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG   65 (65)
T ss_pred             ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence            35666665  3 45899998765    566666667789988763 35667789999999988887776

>PRK06437 hypothetical protein; Provisional

Probab=94.68  E-value=0.26  Score=31.11  Aligned_cols=62  Identities=18%  Similarity=0.322  Sum_probs=47.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |.-+++..+++...++++...||.+|=+    ..|+++..-.+..+|..+.     .++-+++|+++.++.
T Consensus         1 ~~~~~~v~g~~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~   62 (67)
T PRK06437          1 MIAMIRVKGHINKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE   62 (67)
T ss_pred             CcceEEecCCcceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence            4445555566778899999999999877    5689887777778998886     555677888887764

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=94.57  E-value=0.22  Score=32.67  Aligned_cols=60  Identities=20%  Similarity=0.333  Sum_probs=42.3

Q ss_pred             eEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      +...++-..++..||..++.+.++..+...+...+..|+++++|-+-|++-...+.+.+.
T Consensus         5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ   64 (88)
T PF11620_consen    5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ   64 (88)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence            445677788999999999999999999998888887799999999999997777776654

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=94.37  E-value=0.37  Score=31.22  Aligned_cols=58  Identities=26%  Similarity=0.335  Sum_probs=45.3

Q ss_pred             EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEe--c--c--ccccCCccccccccc
Q 026940            5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--A--G--KQLEDGRTLADYNIQ   62 (230)
Q Consensus         5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~--~--g--~~l~d~~tl~~~~i~   62 (230)
                      |..++|...++++++++|+.++=+.|.++.|+.-. .--|.+  .  |  .=|+.+++|.++...
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~   65 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK   65 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence            56789999999999999999999999999998753 235666  1  2  226777888888766

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=94.28  E-value=0.26  Score=32.15  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=35.0

Q ss_pred             eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcc
Q 026940           88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ  125 (230)
Q Consensus        88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~  125 (230)
                      ++.+.+++..+.++|.++|.++.++|++...|.|....
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~   49 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA   49 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence            88999999999999999999999999999999997643

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=94.23  E-value=0.31  Score=32.44  Aligned_cols=62  Identities=19%  Similarity=0.216  Sum_probs=43.1

Q ss_pred             cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec----c-cccc-CCccccccccccccceeeeeee
Q 026940           11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQLE-DGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus        11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~----g-~~l~-d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      ..++-.++..+||+.+...+.+.+.| +..=||+-.    + ..|. .+.|+.+.||.+|..|.+-.+.
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn   81 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN   81 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence            46788899999999999999999999 555677742    2 3354 4579999999999887776554

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=94.18  E-value=0.23  Score=32.42  Aligned_cols=37  Identities=19%  Similarity=0.355  Sum_probs=34.4

Q ss_pred             eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCe
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  200 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~  200 (230)
                      ++.+.+++..+..+|.++|.++.++|++...|.|...
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            8889999999999999999999999999999999763

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=94.09  E-value=0.12  Score=33.50  Aligned_cols=56  Identities=23%  Similarity=0.334  Sum_probs=44.6

Q ss_pred             cCCCChHHHHHHHHHhHhC-CCCCCcEEEecCcccCCCccHhhhc-cccCCceEEEEE
Q 026940           93 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLR  148 (230)
Q Consensus        93 v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~~g~~L~d~~tL~~~~-i~~~~~i~l~~~  148 (230)
                      |+++++|.++++-+..... ..-....|.++|..|++...+++.. +++++.+.+...
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~   58 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE   58 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence            5678999999999988765 4456778889999999988888874 777887777644

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=93.82  E-value=0.4  Score=29.92  Aligned_cols=57  Identities=19%  Similarity=0.352  Sum_probs=42.9

Q ss_pred             EEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       167 i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ++++...|+.+|.+.+.    ++++...+..+|+....+ .-.++-+++||+|.++--..||
T Consensus         9 ~~~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG   65 (65)
T cd00565           9 REVEEGATLAELLEELG----LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG   65 (65)
T ss_pred             EEcCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence            44556789999987764    667778888999877543 3455679999999998887776

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=93.56  E-value=0.26  Score=32.74  Aligned_cols=45  Identities=13%  Similarity=0.275  Sum_probs=38.3

Q ss_pred             eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC---CCcEEEecC
Q 026940           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFAG  123 (230)
Q Consensus        79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~---~~q~L~~~g  123 (230)
                      .+++.+.|+.+.+.+.++..+.+|++.|.++.|+..   ....|.|-.
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlD   50 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVD   50 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEc
Confidence            456778999999999999999999999999999886   466777643

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=93.52  E-value=0.03  Score=46.10  Aligned_cols=61  Identities=23%  Similarity=0.393  Sum_probs=46.3

Q ss_pred             ceeEEEEeccCce--eEEEeeccccHHHHHHHhccccC-CC-CCceEEEEcCeecCCCCcccccC
Q 026940          152 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYN  212 (230)
Q Consensus       152 ~~~i~v~~~~~~~--~~i~v~~~~tV~~lK~~i~~~~~-~~-~~~q~L~~~g~~L~d~~tL~~~~  212 (230)
                      ...+.++..+.+-  ..+..+...||++||..++..+- -| +..|||+|.|+.|.|+..|.+.=
T Consensus         9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l   73 (391)
T KOG4583|consen    9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL   73 (391)
T ss_pred             ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence            3456667666543  45666678899999999999884 33 34699999999999998887753

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=93.37  E-value=0.55  Score=29.18  Aligned_cols=61  Identities=18%  Similarity=0.378  Sum_probs=44.3

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.+.  ++...|+.+|.+.+    ++++....+..+|.....+ .-.++-+++||.|.++.-..||
T Consensus         4 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG   64 (64)
T TIGR01683         4 NGEPVE--VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG   64 (64)
T ss_pred             CCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence            455444  45677899998765    4566777777999887532 3556679999999998887776

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=93.14  E-value=0.36  Score=30.96  Aligned_cols=63  Identities=14%  Similarity=0.249  Sum_probs=50.5

Q ss_pred             eeEEEeeccccHHHHHHHhccccCC--CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~~--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...+.+....||.+|.+.+..++.-  ......+..||+...+  .-.+.-+++||+|.++--..||
T Consensus        13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG   77 (77)
T PF02597_consen   13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG   77 (77)
T ss_dssp             EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred             CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence            5567788899999999999888731  3366778899988877  3666778999999998888777

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=93.09  E-value=0.42  Score=31.49  Aligned_cols=47  Identities=13%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEecCcc
Q 026940           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ  125 (230)
Q Consensus        78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~  125 (230)
                      +|++ ..+|..+.+.++++.+..+|++.|++++++.. ....|.|...+
T Consensus         2 ~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde   49 (82)
T cd06407           2 RVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD   49 (82)
T ss_pred             EEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence            3444 35778899999999999999999999999865 66777776543

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=93.07  E-value=0.52  Score=31.04  Aligned_cols=45  Identities=13%  Similarity=0.174  Sum_probs=35.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceEEEec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA   46 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~~   46 (230)
                      |+|.+ +.+|..+.+.+.++.+..+|+++|.+++++.. ..-.|.|.
T Consensus         1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~   46 (82)
T cd06407           1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL   46 (82)
T ss_pred             CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence            45556 34788999999999999999999999999875 34455553

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=92.65  E-value=0.033  Score=45.54  Aligned_cols=57  Identities=21%  Similarity=0.454  Sum_probs=0.0

Q ss_pred             cccHHHHHHHhcc----------ccCCCCCceE-----EEEcCeecCCCCcccccCCC-------CCCEEEEEEEecCC
Q 026940          172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG  228 (230)
Q Consensus       172 ~~tV~~lK~~i~~----------~~~~~~~~q~-----L~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~~~~gg  228 (230)
                      +.+|.++|..++.          ..++|.+.++     |.|+.+.+-|++||.+..-.       .+.++.+.+-.-||
T Consensus       103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG  181 (309)
T PF12754_consen  103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG  181 (309)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence            5899999999999          8889999999     99999999889999887544       56677776665565

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=92.57  E-value=0.75  Score=29.92  Aligned_cols=60  Identities=17%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             eeEEEeecc-ccHHHHHHHhccccC-C-C-CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          164 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~i~v~~~-~tV~~lK~~i~~~~~-~-~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...++++.. .||.+|++.+.++++ . . .....+..|++...+     +.-+++|++|.++-...||
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG   80 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence            346777766 899999999999874 1 1 133456678877664     4678999999998888776

The C-terminal Gly-Gly of this model is critical to function.

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=92.42  E-value=0.56  Score=30.67  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=42.6

Q ss_pred             ceeEEEeeccccHHHHHHHhccccC-CCC--CceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       163 ~~~~i~v~~~~tV~~lK~~i~~~~~-~~~--~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ....++++...|+.+|.+.+...+. ...  ....+..||+...     .+.-+++||+|.+.-...||
T Consensus        19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG   82 (82)
T PLN02799         19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG   82 (82)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence            4466777788999999999987752 111  1234557777654     34567899999888777776

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=92.33  E-value=0.74  Score=29.49  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=39.5

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  199 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g  199 (230)
                      +.|..++|+...+.+.+..|+.++-+.++++.|+.++...+...|
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            356678899999999999999999999999999999988877544

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=92.33  E-value=0.89  Score=28.30  Aligned_cols=61  Identities=15%  Similarity=0.301  Sum_probs=42.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |.|.+   +|+.+.+   +..|+.+|.+.+    ++++..-.+-++++.+. .....+.-+.+|+.+.++..
T Consensus         1 m~i~~---Ng~~~~~---~~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~   61 (65)
T PRK06488          1 MKLFV---NGETLQT---EATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSP   61 (65)
T ss_pred             CEEEE---CCeEEEc---CcCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEe
Confidence            55655   7887777   346999998854    67775445567887664 44566777899999887643

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=91.86  E-value=0.78  Score=30.47  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026940            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD   39 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~   39 (230)
                      ..++..+|+++-+.+.|++.+.+|++.|.+++|+...
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~   39 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF   39 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence            3567889999999999999999999999999999873

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>smart00666 PB1 PB1 domain

Probab=91.84  E-value=1.1  Score=29.16  Aligned_cols=46  Identities=15%  Similarity=0.335  Sum_probs=37.9

Q ss_pred             eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCc
Q 026940           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  124 (230)
Q Consensus        78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~  124 (230)
                      .+.++. ++..+.+.++.+.|..+|+.+|.++++.+.....|.|...
T Consensus         3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De   48 (81)
T smart00666        3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE   48 (81)
T ss_pred             cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence            345543 6778899999999999999999999998877888888653

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=91.83  E-value=0.52  Score=30.48  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=42.7

Q ss_pred             eEeeecCCCChHHHHHHHHHhHhCC----CCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940           88 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        88 ~~~i~v~~~~tV~~lK~~i~~~~~i----~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~  151 (230)
                      ...++++...||.+|.+.+...++-    ......+..||+...     .+.-+.+|+.|.++....+
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G   79 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG   79 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence            4667788889999999999988642    234456667888776     3456888999988755443

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>smart00666 PB1 PB1 domain

Probab=91.61  E-value=1  Score=29.22  Aligned_cols=44  Identities=16%  Similarity=0.341  Sum_probs=36.7

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~   46 (230)
                      .|.+.. +|..+.+.++++.|..+|+++|.+.++.+.....|.|.
T Consensus         3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~   46 (81)
T smart00666        3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ   46 (81)
T ss_pred             cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence            344544 67899999999999999999999999998766777775

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.59  E-value=0.4  Score=39.58  Aligned_cols=57  Identities=12%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             EEeeccccHHHHHHHhccccCCCCCceEEEE---cCe-----ecCCCCcccccCCCCCCEEEEEE
Q 026940          167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       167 i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~---~g~-----~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      ..+.-.-||.+++..+..+.|+.+.+++|++   .|+     .++-+++|.+|.|++|+.+.+--
T Consensus       352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe  416 (418)
T KOG2982|consen  352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE  416 (418)
T ss_pred             eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence            4455567999999999999999999999985   333     34567899999999999986643

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=91.55  E-value=1.4  Score=29.12  Aligned_cols=61  Identities=11%  Similarity=0.264  Sum_probs=43.6

Q ss_pred             eeEEEeeccccHHHHHHHhccccCC-----------CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~~-----------~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...++++ ..||.+|.+.+.+++.-           ..+...+..||+..+.+..   .-+++||+|.++-...||
T Consensus        17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG   88 (88)
T TIGR01687        17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG   88 (88)
T ss_pred             eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence            4566665 88999999999888641           0123556678877654321   568999999998888777

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=91.46  E-value=1.2  Score=28.22  Aligned_cols=54  Identities=11%  Similarity=0.222  Sum_probs=39.4

Q ss_pred             CCc--EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            9 TGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         9 ~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +|+  ...++++++.||.+|-+.+    ++++..-.+..||..+..     +.-+.+|+.+.++.
T Consensus        10 ng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~   65 (70)
T PRK08364         10 IGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP   65 (70)
T ss_pred             eccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence            455  6678888999999998744    777766566688887743     55577788877764

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=91.37  E-value=0.99  Score=27.88  Aligned_cols=65  Identities=23%  Similarity=0.489  Sum_probs=49.0

Q ss_pred             ccCeeEeeecCCCChHHHHHHHHHhHh---CCCCCCcEEE-ecCcccCCCccHhhhccccCCceEEEEE
Q 026940           84 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~---~i~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~  148 (230)
                      .+|+...++.+.+...--..++--...   +-|+++-.|. -+|..++-++.+.+||+.++-++.+.++
T Consensus         3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK   71 (76)
T PF10790_consen    3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK   71 (76)
T ss_pred             eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence            357778888888877666666555544   3677776666 5788888899999999999998877654

>smart00455 RBD Raf-like Ras-binding domain

Probab=91.18  E-value=0.57  Score=29.81  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=39.5

Q ss_pred             EEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940          156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  199 (230)
Q Consensus       156 ~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g  199 (230)
                      .+..++|+...+.+.|..|+.++-+.+.++.|+.++...+...|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            45568899999999999999999999999999999999888755

>PRK07440 hypothetical protein; Provisional

Probab=91.08  E-value=2.3  Score=26.98  Aligned_cols=61  Identities=20%  Similarity=0.348  Sum_probs=45.5

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.  .++....||.+|-+    ..++++....+-.+|..+.- ....+.-+++||.|.++.-..||
T Consensus        10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG   70 (70)
T PRK07440         10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG   70 (70)
T ss_pred             CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence            4554  45567788988875    34677888888899988863 34666779999999988877776

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=91.00  E-value=0.28  Score=41.04  Aligned_cols=65  Identities=20%  Similarity=0.306  Sum_probs=56.6

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCC--CCcccccCCCCCCEEEEEEEe
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      ..+.+++.+........|+..++..+|++.+...++|+++.+.+  +..+.++|.++++.+.+-.+-
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks   77 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS   77 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence            45678888888889999999999999999999999999999954  579999999999999776553

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=90.94  E-value=0.71  Score=42.16  Aligned_cols=43  Identities=23%  Similarity=0.463  Sum_probs=38.1

Q ss_pred             cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccc
Q 026940            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL   50 (230)
Q Consensus         8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l   50 (230)
                      .++..+.+-++++.|+..+++.|+..+|+|...|.|+|.|...
T Consensus       322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~  364 (732)
T KOG4250|consen  322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS  364 (732)
T ss_pred             ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence            3567888899999999999999999999999999999986443

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=90.83  E-value=0.56  Score=39.64  Aligned_cols=69  Identities=19%  Similarity=0.286  Sum_probs=55.2

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC-CCCCcEEE--ecCcccCC-CccHhhhccccCCce
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKESTL  143 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~i  143 (230)
                      +.-.|.|+..+|......++.+.||.+++.-|.....- +...+.|+  |-.+.|.| +.||++.|+.+...+
T Consensus       304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv  376 (380)
T KOG2086|consen  304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV  376 (380)
T ss_pred             CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence            34678888999999999999999999999999987754 44456666  66788865 779999999875543

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=90.59  E-value=1.6  Score=28.95  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=33.7

Q ss_pred             EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940            3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g   47 (230)
                      +.||.. +|.+..+.++++.+..+|.++|.+++|+. ..-.+.|..
T Consensus         3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykD   47 (86)
T cd06408           3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKD   47 (86)
T ss_pred             EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEc
Confidence            344444 78999999999999999999999999995 233444543

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>smart00455 RBD Raf-like Ras-binding domain

Probab=90.58  E-value=0.74  Score=29.30  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=39.5

Q ss_pred             EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC
Q 026940           80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  123 (230)
Q Consensus        80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g  123 (230)
                      .+..++|+...+.+.++.|+.++-+.+.++.|+.++...++..|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            45578999999999999999999999999999999988888754

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=90.51  E-value=2.1  Score=26.03  Aligned_cols=48  Identities=13%  Similarity=0.295  Sum_probs=35.4

Q ss_pred             EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .+++..+.|+.+||..+....      =.++++|-...++.     -+++||.|.+.-|
T Consensus         9 ~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~-----~L~e~D~v~~Ikk   56 (57)
T PF14453_consen    9 EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDI-----ELKEGDEVFLIKK   56 (57)
T ss_pred             EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCcc-----ccCCCCEEEEEeC
Confidence            456777889999999876643      26789998776554     5678999977654

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=90.36  E-value=3  Score=26.01  Aligned_cols=61  Identities=11%  Similarity=0.203  Sum_probs=43.2

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.++  ++...|+.+|.+.+    +.+.....+-.++..+.. ..-.++-+++||.|.++--..||
T Consensus         6 Ng~~~~--~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG   66 (66)
T PRK08053          6 NDQPMQ--CAAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_pred             CCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence            455554  45667899888754    444556777789988753 23555679999999988877776

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=90.23  E-value=0.58  Score=39.58  Aligned_cols=68  Identities=19%  Similarity=0.313  Sum_probs=54.4

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccC-CCCCceEEE--EcCeec-CCCCcccccCCCCCCEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL  219 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~-~~~~~q~L~--~~g~~L-~d~~tL~~~~i~~~~~i  219 (230)
                      ...|.|+..+|+..-..++.+.||.+++..|..--. -+-..+.|+  |.-+.| +++.||++-|+.+-..+
T Consensus       305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv  376 (380)
T KOG2086|consen  305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV  376 (380)
T ss_pred             cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence            357889999999999999999999999999988664 344456665  777888 56889999999875433

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=90.11  E-value=2.8  Score=26.33  Aligned_cols=61  Identities=18%  Similarity=0.234  Sum_probs=44.3

Q ss_pred             cCceeEEEeecc-ccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~-~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.+  +++.. .||.+|-+.    .++++....+..+|..+.-+ ...++-+++||.|.++.-..||
T Consensus         6 NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG   67 (67)
T PRK07696          6 NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG   67 (67)
T ss_pred             CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence            46654  44444 578877653    46778878888999888643 4667779999999988877776

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=89.89  E-value=1.3  Score=28.39  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=39.6

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g   47 (230)
                      +.|-..+|..-.+.+.|+.|+.|+=+++.++.|+.|+.=-+++.|
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            356677899999999999999999999999999999888777654

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=89.55  E-value=2.4  Score=26.29  Aligned_cols=61  Identities=18%  Similarity=0.364  Sum_probs=44.5

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.+  ++++..|+.+|-..    .+++++...+..+|..+.-+ .-.+.-+++||.|.++.-..||
T Consensus         6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG   66 (66)
T PRK05659          6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG   66 (66)
T ss_pred             CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence            45544  55667888887654    47788888888999777633 3555668999999998887776

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=89.43  E-value=1.9  Score=26.88  Aligned_cols=60  Identities=17%  Similarity=0.288  Sum_probs=43.0

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.+.  +++..|+.+|-+.    .++++....+..++..+..+ ....+ +++||.|.++.-..||
T Consensus         6 NG~~~~--~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~~VgGG   65 (65)
T PRK05863          6 NEEQVE--VDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVTAVQGG   65 (65)
T ss_pred             CCEEEE--cCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEeeccCC
Confidence            455554  4467788877654    47788888898999877532 23345 9999999988877766

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=89.12  E-value=1.5  Score=40.25  Aligned_cols=183  Identities=18%  Similarity=0.229  Sum_probs=97.6

Q ss_pred             cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--e--cccccc--CCccccccccccccceeeee--ee-cCceeeEE
Q 026940           11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQLE--DGRTLADYNIQKESTLHLVL--RL-RGGMQIFV   81 (230)
Q Consensus        11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~--~g~~l~--d~~tl~~~~i~~~~~i~l~~--~~-~~~~~v~v   81 (230)
                      +.+.+.|+.-.+++.+|+.|++..+++...-++.  +  +|..+.  ++.||+..  .++.+|.+.+  .+ ++...++|
T Consensus       877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI  954 (1203)
T KOG4598|consen  877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKI  954 (1203)
T ss_pred             hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEE
Confidence            3678899999999999999999999999877766  2  233333  45677654  3444443322  12 23333333


Q ss_pred             Eec---cCe---e---EeeecCCCChHHHHHHHHHhHhC--------CCCCCcEEEec-----Ccc-cCCCccHhhhccc
Q 026940           82 KTL---TGK---T---ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFA-----GKQ-LEDGRTLADYNIQ  138 (230)
Q Consensus        82 ~~~---~g~---~---~~i~v~~~~tV~~lK~~i~~~~~--------i~~~~q~L~~~-----g~~-L~d~~tL~~~~i~  138 (230)
                      ..+   .+.   +   +..-+..++|+++.|..+-.+..        +...+.|+..+     |+. ++++.++.+-.-.
T Consensus       955 ~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen  955 ILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred             EeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhh
Confidence            322   111   1   23446788999998876654332        22333333322     222 3444444443300


Q ss_pred             cCCceE-------EE-EEeecceeEEEEeccC------ceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940          139 KESTLH-------LV-LRLRGGMQIFVKTLTG------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  196 (230)
Q Consensus       139 ~~~~i~-------l~-~~~~~~~~i~v~~~~~------~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~  196 (230)
                      -.+-..       +. .++-....|.++-+.-      .--++.++ .+.+.+++..+++..|||.+...+.
T Consensus      1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld-~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLD-ANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred             hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEec-CcchHHHHHHHHHhcCCchhhhhhh
Confidence            000000       00 0111223344443321      11223333 4568999999999999999987654

>smart00295 B41 Band 4

Probab=88.98  E-value=3.7  Score=31.53  Aligned_cols=74  Identities=27%  Similarity=0.346  Sum_probs=53.4

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEEE-c--C---eecCCCCcccccCCC-CCCEEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A--G---KQLEDGRTLADYNIQ-KESTLHLVL  223 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~~-~--g---~~L~d~~tL~~~~i~-~~~~i~l~~  223 (230)
                      .+.+.|...+|....+.+++++|+.++-..++.+.|++.. .+-|.+ .  +   .-++...++.+...+ ....+++..
T Consensus         3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~   82 (207)
T smart00295        3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV   82 (207)
T ss_pred             cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence            4567888889999999999999999999999999998543 234443 1  1   245666777777665 345665555


Q ss_pred             Ee
Q 026940          224 RL  225 (230)
Q Consensus       224 ~~  225 (230)
                      |.
T Consensus        83 r~   84 (207)
T smart00295       83 KF   84 (207)
T ss_pred             EE
Confidence            53

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=88.96  E-value=0.19  Score=41.57  Aligned_cols=62  Identities=24%  Similarity=0.419  Sum_probs=47.3

Q ss_pred             eeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCC-C-CCCcEEEecCcccCCCccHhhhccc
Q 026940           77 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGI-P-PDQQRLIFAGKQLEDGRTLADYNIQ  138 (230)
Q Consensus        77 ~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~i-~-~~~q~L~~~g~~L~d~~tL~~~~i~  138 (230)
                      +.+.++..+.  +...+..+...||++||..++..+.- | +..|||+|.|+.|.|...+.+.-++
T Consensus        10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk   75 (391)
T KOG4583|consen   10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK   75 (391)
T ss_pred             eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence            4555655554  45667778889999999999988742 2 3579999999999999888887543

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=88.76  E-value=2.6  Score=27.84  Aligned_cols=62  Identities=13%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .||+.+.  +++..||.+|-+.    .++++....+-.||..+.- ...+++-+++||.|.++.-..||
T Consensus        23 VNG~~~~--~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG   84 (84)
T PRK06083         23 INDQSIQ--VDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG   84 (84)
T ss_pred             ECCeEEE--cCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence            3466544  4567788888764    3678888888899988853 45777789999999988777776

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=88.54  E-value=1.3  Score=28.86  Aligned_cols=59  Identities=14%  Similarity=0.164  Sum_probs=38.5

Q ss_pred             eeEeeecCCCChHHHHHHHHHhHhC-CCC--CCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940           87 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        87 ~~~~i~v~~~~tV~~lK~~i~~~~~-i~~--~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  150 (230)
                      ....++++...||++|.+.+..+.. +..  ....+..|++...     .+.-+++|+.|.+.....
T Consensus        19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~Ppvs   80 (82)
T PLN02799         19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPIS   80 (82)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCC
Confidence            4567788889999999999977652 111  1223556777654     334577899887764433

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=88.46  E-value=3.4  Score=25.60  Aligned_cols=61  Identities=16%  Similarity=0.324  Sum_probs=42.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |.|+|   +|+.+  ++..+.||.++-.    ..|+++..-.+.++|..+... ...+.-+++|+++.++-
T Consensus         1 m~i~v---NG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~   61 (66)
T PRK05659          1 MNIQL---NGEPR--ELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVH   61 (66)
T ss_pred             CEEEE---CCeEE--EcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEE
Confidence            55555   77755  5567889998876    568888777777888666533 34555578888887764

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=87.63  E-value=3.6  Score=27.29  Aligned_cols=46  Identities=15%  Similarity=0.268  Sum_probs=36.9

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCc
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  124 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~  124 (230)
                      ++|.+. ..|....+.++++.+..+|.++|.+++++. ....+.|...
T Consensus         3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE   48 (86)
T cd06408           3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD   48 (86)
T ss_pred             EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence            455554 467789999999999999999999999985 5666667655

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=87.54  E-value=1  Score=37.82  Aligned_cols=64  Identities=20%  Similarity=0.321  Sum_probs=55.6

Q ss_pred             cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCC--CccHhhhccccCCceEEEEE
Q 026940           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d--~~tL~~~~i~~~~~i~l~~~  148 (230)
                      ....+++.+..+-....++..++..+|++.+..-++|+++.+.+  ...+..+|+..++.+.+.-+
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k   76 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK   76 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence            55678888998889999999999999999999999999999865  56899999999998866543

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=87.47  E-value=3.6  Score=25.56  Aligned_cols=60  Identities=15%  Similarity=0.241  Sum_probs=42.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |.|+|   +|+.+.+  .++.|+.+|=+    ..++++..--+.+++..+... ....+ +++|+++.++-
T Consensus         1 m~i~v---NG~~~~~--~~~~tl~~ll~----~l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~   60 (65)
T PRK05863          1 MIVVV---NEEQVEV--DEQTTVAALLD----SLGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVT   60 (65)
T ss_pred             CEEEE---CCEEEEc--CCCCcHHHHHH----HcCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEe
Confidence            55555   7776655  46789888877    568888877788888766432 23345 89999988764

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=87.15  E-value=2.8  Score=26.72  Aligned_cols=49  Identities=24%  Similarity=0.356  Sum_probs=37.6

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC--eecC
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE  203 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g--~~L~  203 (230)
                      +.|..++|+...+.+.+..|+.+.-..+.++.|+.++...+...|  +.++
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~   53 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLD   53 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcccc
Confidence            466778999999999999999999999999999999877776433  4454

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=87.12  E-value=2.9  Score=26.62  Aligned_cols=51  Identities=24%  Similarity=0.309  Sum_probs=38.1

Q ss_pred             eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC--cccCCC
Q 026940           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDG  129 (230)
Q Consensus        79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g--~~L~d~  129 (230)
                      +.|..++|+...+.+.++.|+.+.-..+.++.++.+....++..|  +.++-+
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~   55 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD   55 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence            346678999999999999999999999999999999887776433  344433

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=87.10  E-value=5.1  Score=24.95  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=41.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |.|+|   +|+.+.+  ..+.||.+|-+.    .++++..-.+-.++..+. ....+.+-+++|+.+.++-.
T Consensus         1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~~   62 (66)
T PRK08053          1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQV   62 (66)
T ss_pred             CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEEE
Confidence            55666   6776665  567799988874    566555555667887664 33456666888998887643

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.84  E-value=1.5  Score=35.33  Aligned_cols=69  Identities=16%  Similarity=0.265  Sum_probs=56.8

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l  221 (230)
                      -.+.|+..+|++...++++..|...++.-|.-+.+..++.+.|.  |....+.   -.++|..+++-+.+++.+
T Consensus       211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil  284 (290)
T KOG2689|consen  211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL  284 (290)
T ss_pred             eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence            46778888999999999999999999999999998877666665  5555552   257999999999888754

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=86.30  E-value=3.4  Score=26.75  Aligned_cols=59  Identities=15%  Similarity=0.262  Sum_probs=40.8

Q ss_pred             eEeeecCCC-ChHHHHHHHHHhHhC-C-C-CCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940           88 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        88 ~~~i~v~~~-~tV~~lK~~i~~~~~-i-~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~  151 (230)
                      ...++++.+ .||.+|.+.+..+.+ + . .....+..|++...+     +.-+++|+.|.+.....+
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG   79 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG   79 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence            356778776 899999999998874 1 1 123456677777664     456788999887755443

The C-terminal Gly-Gly of this model is critical to function.

>TIGR02958 sec_mycoba_snm4 secretion protein snm4

Probab=86.20  E-value=3.6  Score=36.30  Aligned_cols=70  Identities=14%  Similarity=0.174  Sum_probs=55.3

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC----CCC--ceEEE-eccccccCCccccccccccccceeeeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPD--QQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi----~~~--~q~l~-~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      ||+|... .+...+-++.+.+|.|+-..+.+..|=    +..  .-.|. .+|.+|+.+.||.+.|+.+|+.+++...
T Consensus         4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~   80 (452)
T TIGR02958         4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA   80 (452)
T ss_pred             EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence            6777655 367888899999999999999988864    222  22333 5689999999999999999999999864

Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=85.55  E-value=6.4  Score=24.84  Aligned_cols=58  Identities=19%  Similarity=0.381  Sum_probs=44.8

Q ss_pred             EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +++++...|+++|-+.    .+++++......||.....+ .-.++-+++||.|.++.-..||
T Consensus        11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG   68 (68)
T COG2104          11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG   68 (68)
T ss_pred             EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence            4556666899988754    46778888888999888643 4667788999999988877776

>TIGR02958 sec_mycoba_snm4 secretion protein snm4

Probab=85.50  E-value=3.3  Score=36.54  Aligned_cols=71  Identities=14%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCC------CCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~------~~~~q~L~-~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      ++|... .+...+.++.+..|.+|--.+-+..+-      ++....|. -+|..|+.+.||.+.||.||+.+++.-+.+
T Consensus         5 VtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~~   82 (452)
T TIGR02958         5 VTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPASA   82 (452)
T ss_pred             EEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence            455533 355788888999999998888776653      23445666 577899999999999999999999986543

Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=85.50  E-value=6.5  Score=24.61  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             CEEEEEccCCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |.|+|   +|+.+.  +..+ .||.+|-+    ..++++..--+-+++..+.. .....+-+++|+.+.++-
T Consensus         1 m~I~v---NG~~~~--~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~   62 (67)
T PRK07696          1 MNLKI---NGNQIE--VPESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVT   62 (67)
T ss_pred             CEEEE---CCEEEE--cCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEE
Confidence            55655   777664  4454 57888776    56888876666788877643 356677788899887764

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=85.50  E-value=0.25  Score=40.55  Aligned_cols=62  Identities=19%  Similarity=0.478  Sum_probs=0.0

Q ss_pred             eeeEEEeccCeeEeeecC---C--CChHHHHHHHHHh----------HhCCCCCCcE-----EEecCcccCCCccHhhhc
Q 026940           77 MQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYN  136 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~---~--~~tV~~lK~~i~~----------~~~i~~~~q~-----L~~~g~~L~d~~tL~~~~  136 (230)
                      +.|.++...+..+.+.+.   +  +.+|.++|..+++          ..++|.+..+     |+|+.+.+.|+.+|.+..
T Consensus        79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l  158 (309)
T PF12754_consen   79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL  158 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence            555555554444433322   2  5799999999999          8899999988     999999998988988876


Q ss_pred             cc
Q 026940          137 IQ  138 (230)
Q Consensus       137 i~  138 (230)
                      -.
T Consensus       159 ~~  160 (309)
T PF12754_consen  159 AD  160 (309)
T ss_dssp             --
T ss_pred             hc
Confidence            44

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=85.39  E-value=6.5  Score=24.17  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=40.4

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.+  ++++..|+.+|.+.+..    + ....+..+|.....+ .-.+.-+++||+|.++.-..||
T Consensus         6 Ng~~~--~~~~~~tl~~ll~~l~~----~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG   65 (65)
T PRK06944          6 NQQTL--SLPDGATVADALAAYGA----R-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG   65 (65)
T ss_pred             CCEEE--ECCCCCcHHHHHHhhCC----C-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence            35544  45667899999876633    2 235666888776532 2344458999999998888777

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=85.15  E-value=4.4  Score=26.28  Aligned_cols=46  Identities=20%  Similarity=0.413  Sum_probs=36.0

Q ss_pred             eeEEEeccCeeEe-eecCCCChHHHHHHHHHhHhCCCCCCcEEEecCc
Q 026940           78 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  124 (230)
Q Consensus        78 ~v~v~~~~g~~~~-i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~  124 (230)
                      .+.+. .++.... +.+..+.+..+|+.+|...++.+.....+.|...
T Consensus         3 ~vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~   49 (84)
T PF00564_consen    3 RVKVR-YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDE   49 (84)
T ss_dssp             EEEEE-ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEET
T ss_pred             EEEEE-ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCC
Confidence            34443 3445555 8899999999999999999999988888888653

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00295 B41 Band 4

Probab=84.96  E-value=6.8  Score=30.00  Aligned_cols=37  Identities=32%  Similarity=0.408  Sum_probs=33.7

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP   38 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~   38 (230)
                      .+.|..++|....+.+++..|+.++-+.|..+.|++.
T Consensus         5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~   41 (207)
T smart00295        5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE   41 (207)
T ss_pred             EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence            4677888999999999999999999999999999954

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=84.12  E-value=1.9  Score=30.45  Aligned_cols=56  Identities=21%  Similarity=0.480  Sum_probs=39.1

Q ss_pred             eec-cccHHHHHHHhcccc----CCCC------CceEEEE----------------cC-eec---CCCCcccccCCCCCC
Q 026940          169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIF----------------AG-KQL---EDGRTLADYNIQKES  217 (230)
Q Consensus       169 v~~-~~tV~~lK~~i~~~~----~~~~------~~q~L~~----------------~g-~~L---~d~~tL~~~~i~~~~  217 (230)
                      ++. +.||.+|++.+.+..    |++|      +.+++++                .. ..|   +++++|.++||.+..
T Consensus        22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET  101 (122)
T PF10209_consen   22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET  101 (122)
T ss_pred             CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence            665 889999988877654    4433      2233332                11 466   778999999999999


Q ss_pred             EEEEEEE
Q 026940          218 TLHLVLR  224 (230)
Q Consensus       218 ~i~l~~~  224 (230)
                      .|.++.+
T Consensus       102 EiSfF~~  108 (122)
T PF10209_consen  102 EISFFNM  108 (122)
T ss_pred             eeeeeCH
Confidence            9987654

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=84.04  E-value=3.4  Score=27.27  Aligned_cols=61  Identities=11%  Similarity=0.255  Sum_probs=40.8

Q ss_pred             eeEeeecCCCChHHHHHHHHHhHhCC------C-----CCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940           87 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        87 ~~~~i~v~~~~tV~~lK~~i~~~~~i------~-----~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~  151 (230)
                      ....++++ ..||.+|.+.+..+++-      .     .....+..||+....+..   ..+++|+.|.+.....+
T Consensus        16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG   87 (88)
T TIGR01687        16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG   87 (88)
T ss_pred             ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence            34567776 88999999999887641      0     123455577776654322   56889999988755443

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=83.96  E-value=4  Score=24.80  Aligned_cols=53  Identities=23%  Similarity=0.339  Sum_probs=36.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      |+|+|   +|+  .+++..+.|..+||.++..      +.-.++++|-+..++..|.     +|+.+.+
T Consensus         1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~-----e~D~v~~   53 (57)
T PF14453_consen    1 MKIKV---NEK--EIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELK-----EGDEVFL   53 (57)
T ss_pred             CEEEE---CCE--EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccC-----CCCEEEE
Confidence            67777   444  5677888999999997654      2337789998887766654     4455544

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=83.95  E-value=3.5  Score=26.54  Aligned_cols=39  Identities=21%  Similarity=0.336  Sum_probs=32.7

Q ss_pred             cCceeEEEee-ccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940          161 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG  199 (230)
Q Consensus       161 ~~~~~~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~L~~~g  199 (230)
                      +|....+.++ .+.|..+|+++|.++++.+.....+.|.+
T Consensus         8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D   47 (81)
T cd05992           8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD   47 (81)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence            3567788888 89999999999999999876677777765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=83.92  E-value=3.3  Score=25.65  Aligned_cols=60  Identities=20%  Similarity=0.385  Sum_probs=41.1

Q ss_pred             cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~  151 (230)
                      +|+.+  +++...|+.+|.+.+    ++++....+..||+....+ ...+.-+++|+.|.+.....+
T Consensus         5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G   64 (65)
T cd00565           5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG   64 (65)
T ss_pred             CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence            34444  556678999988775    4677777777888877442 244456889999988755443

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B

Probab=83.58  E-value=4.8  Score=26.75  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             EEeec-cccHHHHHHHhcc-ccCCCC-C---ceEEEEcCee----cCCCCcccccCCCCCCEEEE
Q 026940          167 LEVES-SDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGKQ----LEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       167 i~v~~-~~tV~~lK~~i~~-~~~~~~-~---~q~L~~~g~~----L~d~~tL~~~~i~~~~~i~l  221 (230)
                      +.++. .+|+.+|-..|.+ +.|... +   .-.++|....    -...++|+++||.+|+.+.+
T Consensus         2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v   66 (87)
T PF14732_consen    2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV   66 (87)
T ss_dssp             EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred             EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence            34453 5799999887654 666533 2   2234443332    12367999999999998865

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=83.50  E-value=7.1  Score=32.68  Aligned_cols=63  Identities=17%  Similarity=0.234  Sum_probs=48.4

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      ||+.  ++++...|+.+|-+.    .+++++...+..||..+.- ....++-+++||.|.++.-..||.+
T Consensus         6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs~   68 (326)
T PRK11840          6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGSD   68 (326)
T ss_pred             CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCCC
Confidence            4554  445667788888754    4778888888899988853 3467778999999999999999864

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=83.03  E-value=2.2  Score=30.13  Aligned_cols=55  Identities=22%  Similarity=0.523  Sum_probs=37.2

Q ss_pred             ecC-CCcHHHHHHHhhhh----hCCCCCce------EEEec--c---------------ccc---cCCcccccccccccc
Q 026940           17 VES-SDTIDNVKAKIQDK----EGIPPDQQ------RLIFA--G---------------KQL---EDGRTLADYNIQKES   65 (230)
Q Consensus        17 v~~-~~tv~~lK~~i~~~----~gi~~~~q------~l~~~--g---------------~~l---~d~~tl~~~~i~~~~   65 (230)
                      |+. +.||.+|++.|.+.    .|+||.+-      +++..  |               ..|   +++.+|.++|+.+++
T Consensus        22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET  101 (122)
T PF10209_consen   22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET  101 (122)
T ss_pred             CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence            666 78999988776655    57777332      22221  1               235   567899999999999


Q ss_pred             ceeeee
Q 026940           66 TLHLVL   71 (230)
Q Consensus        66 ~i~l~~   71 (230)
                      .|.++-
T Consensus       102 EiSfF~  107 (122)
T PF10209_consen  102 EISFFN  107 (122)
T ss_pred             eeeeeC
Confidence            887753

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=83.03  E-value=2.4  Score=27.01  Aligned_cols=62  Identities=13%  Similarity=0.218  Sum_probs=46.9

Q ss_pred             eEeeecCCCChHHHHHHHHHhHhCC--CCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeec
Q 026940           88 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        88 ~~~i~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~  151 (230)
                      ...+.+....||.+|.+.+..+.+-  ......+..||....+  ...+.-+++|+.|.++....+
T Consensus        13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG   76 (77)
T PF02597_consen   13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG   76 (77)
T ss_dssp             EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred             CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence            5677888899999999999888741  2356677788888877  366777899999988754443

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=82.51  E-value=3.2  Score=26.93  Aligned_cols=36  Identities=11%  Similarity=0.250  Sum_probs=32.8

Q ss_pred             eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC
Q 026940           88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  123 (230)
Q Consensus        88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g  123 (230)
                      ++.+.+.+..+.++|..+|+++...+++...|.|..
T Consensus         8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~   43 (78)
T cd06411           8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA   43 (78)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence            577889999999999999999999999999999854

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=82.29  E-value=6.2  Score=25.53  Aligned_cols=38  Identities=21%  Similarity=0.423  Sum_probs=32.4

Q ss_pred             CCcEEE-EEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940            9 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         9 ~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~   46 (230)
                      +|..+. +.+.++.|..+|+.+|...++.++..-.+.|.
T Consensus         9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~   47 (84)
T PF00564_consen    9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK   47 (84)
T ss_dssp             TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence            455555 89999999999999999999999777778775

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=82.24  E-value=6.2  Score=25.87  Aligned_cols=37  Identities=19%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             eccCeeEeeecCC--CChHHHHHHHHHhHhCCCCCCcEEEe
Q 026940           83 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF  121 (230)
Q Consensus        83 ~~~g~~~~i~v~~--~~tV~~lK~~i~~~~~i~~~~q~L~~  121 (230)
                      ..+|....+.+++  +.+..+|++.+..+++++  ...|.|
T Consensus         6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY   44 (81)
T cd06396           6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY   44 (81)
T ss_pred             EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence            4678888888888  779999999999999999  555555

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=82.22  E-value=4.2  Score=37.38  Aligned_cols=44  Identities=23%  Similarity=0.448  Sum_probs=39.0

Q ss_pred             eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCccc
Q 026940           83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL  126 (230)
Q Consensus        83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L  126 (230)
                      ..++..+.+-++++.|...+++.|...+|+|...|.|+|.|...
T Consensus       321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~  364 (732)
T KOG4250|consen  321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS  364 (732)
T ss_pred             eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence            45677789999999999999999999999999999999987543

>PRK07440 hypothetical protein; Provisional

Probab=82.10  E-value=9.4  Score=24.16  Aligned_cols=56  Identities=18%  Similarity=0.306  Sum_probs=40.4

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +|+.  .++..+.||.+|-.    ..++++..--+-++|..+. .....++-+++|+.+.++-
T Consensus        10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~-r~~w~~~~L~~gD~IEIv~   65 (70)
T PRK07440         10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH-RQFWEQTQVQPGDRLEIVT   65 (70)
T ss_pred             CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEEE
Confidence            6775  55567889998876    6678876666678887664 3456677788888887753

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=81.77  E-value=6.6  Score=25.19  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=33.3

Q ss_pred             EEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940            3 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~   46 (230)
                      |.+.. +|..+.+.+. .+.|..+|+++|.+.++.+...-.+.|.
T Consensus         3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~   46 (81)
T cd05992           3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP   46 (81)
T ss_pred             EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence            44533 4678888888 8999999999999999998644455553

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor

Probab=81.31  E-value=5.1  Score=25.78  Aligned_cols=41  Identities=7%  Similarity=0.145  Sum_probs=35.0

Q ss_pred             EEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940          156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  196 (230)
Q Consensus       156 ~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~  196 (230)
                      .|..++|+...+.+.+.+|+.++-+..+++.++.|+.--|-
T Consensus         3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr   43 (77)
T cd01818           3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR   43 (77)
T ss_pred             EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence            35567899999999999999999999999999988765443

Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.

>KOG4261 consensus Talin [Cytoskeleton]

Probab=81.20  E-value=8.8  Score=35.77  Aligned_cols=101  Identities=26%  Similarity=0.334  Sum_probs=78.2

Q ss_pred             CeeEeeecCCCChHHHHHHHHHhHhC---CCCCCcEEEe------cCcccCCCccHhhhccccCCceEEEEEeecceeEE
Q 026940           86 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  156 (230)
Q Consensus        86 g~~~~i~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~  156 (230)
                      +-.-++.+.|+++|-+--..|.+++.   .-+....|+.      .|-.|+.++++.+|-+.+++++.-.-   .+-...
T Consensus        12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~---k~r~lk   88 (1003)
T KOG4261|consen   12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR---KQRPLK   88 (1003)
T ss_pred             ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh---hcccce
Confidence            44567889999999998888887764   2255555553      34557899999999999999885432   223466


Q ss_pred             EEeccCceeEEEeeccccHHHHHHHhccccCCC
Q 026940          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP  189 (230)
Q Consensus       157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~  189 (230)
                      ++..+|..-++.++.+.+|.+|---|+.+.||.
T Consensus        89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt  121 (1003)
T KOG4261|consen   89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT  121 (1003)
T ss_pred             eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence            777888888999999999999999999999873

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=80.37  E-value=7.4  Score=26.47  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=35.2

Q ss_pred             EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940            5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~   46 (230)
                      +...+|++.-+.|+.+.|..+|+.++.+..+++.. ..|.|.
T Consensus        17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~   57 (97)
T cd06410          17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ   57 (97)
T ss_pred             EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence            34568999999999999999999999999999876 666663

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=80.31  E-value=9.7  Score=25.13  Aligned_cols=56  Identities=9%  Similarity=0.162  Sum_probs=40.5

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +|+.+.+  +.+.||.+|=.    .+++++..--+-+||..+ +....+++-+.+|+.|.++-
T Consensus        24 NG~~~~~--~~~~tl~~LL~----~l~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~   79 (84)
T PRK06083         24 NDQSIQV--DISSSLAQIIA----QLSLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQ   79 (84)
T ss_pred             CCeEEEc--CCCCcHHHHHH----HcCCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEEE
Confidence            6665544  56778888776    358888666677888777 44567777789999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		1e-80
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		6e-80
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		6e-80
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		8e-80
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		8e-80
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		3e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		3e-79
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		2e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		2e-78
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		5e-38
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		5e-38
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		2e-36
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		2e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		2e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		2e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		2e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		3e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		3e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		3e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		3e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		3e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		3e-37
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		3e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		3e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		3e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		3e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		4e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		4e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		4e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		4e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		4e-37
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		4e-37
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-37
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		4e-37
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		4e-37
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		4e-37
3jvz_X	81	E2~ubiquitin-Hect Length = 81		4e-37
3jvz_X	81	E2~ubiquitin-Hect Length = 81		4e-37
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		8e-37
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		8e-37
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		8e-37
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		1e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		1e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		1e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		1e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		1e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		1e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		1e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		1e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		1e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		1e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		1e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		2e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		2e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		2e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		3e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		3e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		3e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		3e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		3e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		3e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		3e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		3e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		3e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-36
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		3e-36
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		5e-36
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		5e-36
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		5e-36
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		5e-36
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		5e-36
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		5e-36
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		6e-36
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		6e-36
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		6e-36
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		6e-36
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		6e-36
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		6e-36
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		6e-36
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		6e-36
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		7e-36
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		7e-36
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		7e-36
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		7e-36
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		7e-36
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		7e-36
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		7e-36
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		7e-36
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		7e-36
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		9e-36
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		9e-36
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		9e-36
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		3e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		3e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		3e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		3e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		3e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		3e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		3e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		3e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		4e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		4e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		4e-35
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		6e-35
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		6e-35
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		7e-35
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		7e-35
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		7e-35
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		9e-35
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		9e-35
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		9e-35
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		2e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		2e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		2e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		2e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		2e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		2e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		2e-34
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		2e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		2e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		2e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		2e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		4e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		4e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		4e-34
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		4e-34
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		4e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		4e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		4e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		4e-34
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		5e-34
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		5e-34
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		5e-34
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		2e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		2e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		2e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		2e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		2e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		2e-33
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		9e-33
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		9e-33
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		2e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		2e-32
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		6e-31
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		8e-31
4hk2_A	78	U7ub25.2540 Length = 78		3e-30
4hk2_A	78	U7ub25.2540 Length = 78		3e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		3e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		3e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		3e-30
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		1e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		1e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		1e-25
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		3e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		3e-22
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		1e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		1e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		1e-21
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		6e-21
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		6e-21
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		3e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		3e-20
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		5e-20
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		5e-20
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		1e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		1e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		1e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		2e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		2e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		2e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		2e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		2e-19
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		2e-19
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		5e-19
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		5e-19
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		3e-12
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		4e-12
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		6e-12
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		3e-11
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		5e-11
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		5e-11
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		1e-10
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		1e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		1e-08
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		1e-08
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		1e-08
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-08
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-08
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		3e-08
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		3e-08
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		7e-08
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		7e-08
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		1e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		1e-07
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		4e-07
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		4e-07
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		5e-07
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		5e-07
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		5e-07
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		9e-07
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		9e-07
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		9e-07
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		2e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		2e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		2e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		2e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		2e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		2e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		2e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		3e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		3e-06
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		8e-06
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		8e-06
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		8e-06
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		2e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		2e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		2e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		3e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		3e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		4e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		4e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		4e-05
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		8e-05
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		8e-05
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		8e-05
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		2e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		2e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		2e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		2e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		2e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		2e-04

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (755), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 194
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (750), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (749), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  293 bits (749), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  291 bits (744), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 2   QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 122 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  291 bits (744), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 198 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (737), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (737), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 136 NIQKESTLHLVLRLRGGMQIFVK 158
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 75/77 (97%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 165 NIQKESTLHLVLRLRGG 181

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1  MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 81 IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLR-GGMQIFVKTLTGK 87
          IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61 IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLR-GGMQIFVKTLTGK 163
           IQKESTLHLVLRLR GGM+  +  L  K
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKK 88

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGD 229
           IQKESTLHLVLRLRGGD
Sbjct: 61  IQKESTLHLVLRLRGGD 77

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGGD 229
           IQKESTLHLVLRLRGGD
Sbjct: 64  IQKESTLHLVLRLRGGD 80

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 83 IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 134 DYNIQKESTLHLVLRLRG 151
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 210 DYNIQKESTLHLVLRLRG 227
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLH VLRLRGG
Sbjct: 61 IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 63 IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 64 IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRG 151
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRG 227
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8  MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 68 IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 64 IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/80 (88%), Positives = 75/80 (93%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+D
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67
Query: 211 YNIQKESTLHLVLRLRGGDF 230
           YNIQ+ESTLHLVLRLRGG  
Sbjct: 68  YNIQRESTLHLVLRLRGGSM 87

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 133 ADYNIQKESTLHLVLRLR 150
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 209 ADYNIQKESTLHLVLRLR 226
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
          QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62 QKESTLHLVLRLRGG 76
          QKESTLHLVLRLRGG
Sbjct: 62 QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 138 QKESTLHLVLRLRGG 152
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 214 QKESTLHLVLRLRGG 228
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 134 DYNIQKESTLHLVLRLR 150
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 210 DYNIQKESTLHLVLRLR 226
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKEST HLVLRLRGG
Sbjct: 61 IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 134 DYNIQKESTLHLVLRLR 150
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 210 DYNIQKESTLHLVLRLR 226
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 55
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 56 LADYNIQKESTLHLVLRLRGG 76
          L+DYNIQKESTLHLVLRLRGG
Sbjct: 61 LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 131
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 132 LADYNIQKESTLHLVLRLRGG 152
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 207
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 208 LADYNIQKESTLHLVLRLRGG 228
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRL 73
          IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRL 149
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRL 225
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKEST+HLVLRLRGG
Sbjct: 61 IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 75/77 (97%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 69  NIQKESTLHLVLRLRGG 85

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 1  MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
          MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1  MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 54 RTLADYNIQKESTLHLVLRLRGG 76
          RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 77  MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 130 RTLADYNIQKESTLHLVLRLRGG 152
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 153 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 205
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 206 RTLADYNIQKESTLHLVLRLRGG 228
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLV 70
          IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLV 146
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLV 222
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLR 72
          IQKESTLHLVLR
Sbjct: 61 IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLR 148
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLR 224
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          +QKEST+HLVLRLRGG
Sbjct: 61 LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 1  MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
          MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1  MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 53 GRTLADYNIQKESTLHLVLRLRGG 76
          GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 77  MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 129 GRTLADYNIQKESTLHLVLRLRGG 152
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 153 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 52
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 53 GRTLADYNIQKESTLHLVLRLRGG 76
          GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 128
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 129 GRTLADYNIQKESTLHLVLRLRGG 152
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 204
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLR 150
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLR 226
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 135 YNIQKESTLHLVLRLRGGM 153
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 69/78 (88%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+QKESTLHLVLRLRGG
Sbjct: 64  YNVQKESTLHLVLRLRGG 81

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTL 67
          IQK STL
Sbjct: 64 IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTL 143
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTL 219
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKEST 66
          I   S 
Sbjct: 64 IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKEST 142
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKEST 218
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          I+  S LHLVL LRGG
Sbjct: 61 IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 62 ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 67 ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 136 NIQKESTLHLVLR 148
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 212 NIQKESTLHLVLR 224
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 135 YNIQKESTLHLVLR 148
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 211 YNIQKESTLHLVLR 224
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 136 NIQKESTLHLVLRLR 150
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 212 NIQKESTLHLVLRLR 226
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 135 YNIQKESTLHLVLR 148
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 211 YNIQKESTLHLVLR 224
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 134 DYNIQKESTLHLVLRLRGG 152
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 210 DYNIQKESTLHLVLRLRGG 228
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 61 IQKESTLHLVLRLRGGMQ 78
          ++  ST+ + LRLRGG++
Sbjct: 65 LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 137 IQKESTLHLVLRLRGGMQ 154
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 213 IQKESTLHLVLRLRGG 228
           ++  ST+ + LRLRGG
Sbjct: 65  LKPLSTVFMNLRLRGG 80

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 75  GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 133 ADYNIQKESTLHLVLR 148
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 151 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 209 ADYNIQKESTLHLVLR 224
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 76  GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 134 DYNIQKESTLHLVLR 148
           DY++     + L++R
Sbjct: 67  DYDVGLNDIIQLLVR 81

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 152 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 210 DYNIQKESTLHLVLR 224
           DY++     + L++R
Sbjct: 67  DYDVGLNDIIQLLVR 81

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 61 IQKESTLHLVLRLR 74
          ++++S +H+V R R
Sbjct: 61 LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 137 IQKESTLHLVLRLR 150
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 213 IQKESTLHLVLRLR 226
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 61 IQKESTLHLVLRLRG 75
          ++  ST+ + LRLRG
Sbjct: 65 LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 137 IQKESTLHLVLRLRG 151
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 213 IQKESTLHLVLRLRG 227
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 56  LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 114
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 115 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 190
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 136 NIQKESTLHL 145
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 212 NIQKESTLHL 221
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 68 HLVLRLRG 75
          HL L+ RG
Sbjct: 79 HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 144 HLVLRLRG 151
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 220 HLVLRLRG 227
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 136 NIQKESTLHLVLRLRGG 152
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 212 NIQKESTLHLVLRLRGG 228
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 8   LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 68  HLVLRLRGG 76
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 144 HLVLRLRGG 152
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 220 HLVLRLRGG 228
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 66 VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 137 IQKESTLHLVLR 148
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 213 IQKESTLHLVLR 224
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 136 NIQKESTLHLVLR 148
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 212 NIQKESTLHLVLR 224
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 61 IQKESTLHLVL 71
          I K+  + +++
Sbjct: 84 IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 137 IQKESTLHLVL 147
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 213 IQKESTLHLVL 223
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
          + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 91  LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 58 DYNI 61
          +Y I
Sbjct: 64 EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 134 DYNI 137
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 210 DYNI 213
           +Y I
Sbjct: 64  EYKI 67

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYNI 61
          +Y I
Sbjct: 61 EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 134 DYNI 137
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 210 DYNI 213
           +Y I
Sbjct: 61  EYKI 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	6e-82
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	4e-81
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	4e-80
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	4e-80
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	1e-79
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	5e-79
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-69
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-68
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	9e-45
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	7e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-65
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	5e-58
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	4e-44
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	5e-55
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	5e-55
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	7e-43
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	3e-54
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	4e-52
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	8e-49
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	7e-53
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	7e-53
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	4e-52
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-52
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-52
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	6e-50
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-51
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-51
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	1e-46
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-51
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-51
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	8e-51
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	8e-51
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	8e-51
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	9e-50
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	9e-50
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	1e-46
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	2e-49
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	2e-49
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	3e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	4e-49
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	3e-48
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	4e-48
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	6e-49
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	6e-49
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	4e-48
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-48
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-48
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-48
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-48
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-48
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	1e-47
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	3e-48
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	3e-48
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	3e-48
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-48
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-48
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-48
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	8e-48
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	1e-47
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-46
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-47
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-47
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	6e-47
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	5e-47
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	5e-47
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	5e-47
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	4e-46
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	4e-46
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	8e-45
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	6e-46
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	6e-46
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	4e-44
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	2e-45
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	2e-45
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-45
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	9e-45
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	9e-45
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	2e-44
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	3e-44
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	3e-44
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	4e-44
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	7e-44
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	7e-44
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	1e-42
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-43
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-43
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-43
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	3e-43
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	3e-43
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-42
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-43
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-43
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-43
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	5e-43
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	5e-43
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	5e-43
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	5e-43
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	5e-43
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-42
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	4e-42
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	4e-42
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	9e-41
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	6e-42
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	6e-42
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	6e-40
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	1e-41
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	1e-41
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-41
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-40
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-40
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-40
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-40
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-40
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-40
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	6e-40
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	6e-40
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	6e-40
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-39
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-39
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-39
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	6e-39
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	6e-39
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	6e-39
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	4e-36
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	5e-36
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	3e-35
1we6_A	111	Splicing factor, putative; structural genomics, ub	3e-35
1we6_A	111	Splicing factor, putative; structural genomics, ub	3e-35
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-35
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-30
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-30
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	4e-30
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-29
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-29
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-29
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	2e-24
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	9e-24
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	1e-23
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	5e-21
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	5e-21
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	3e-20
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-18
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-18
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-18
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	3e-15
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	3e-15
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	4e-15
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	7e-14
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	7e-14
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	7e-14
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	8e-14
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	8e-14
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	8e-14
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	9e-14
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	9e-14
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	9e-14
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	3e-13
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	3e-13
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	3e-13
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	4e-13
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	4e-13
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	4e-13
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	4e-13
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	4e-13
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	4e-12
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	8e-13
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	8e-13
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	8e-13
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	3e-12
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	3e-12
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	3e-12
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	4e-12
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	4e-12
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	4e-12
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	2e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	2e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	4e-11
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	4e-11
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	4e-11
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	4e-11
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	1e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	1e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	1e-07
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	6e-07
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	6e-07
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	6e-07
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	3e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	3e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	3e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	4e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	4e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	4e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	4e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	4e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	4e-06
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	5e-06
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	5e-06
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	2e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	2e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	2e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	2e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	3e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	3e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	3e-05
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	5e-05
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	5e-05
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	5e-05
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	2e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	2e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	2e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	2e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	2e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	2e-04
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	5e-04
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	5e-04
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	5e-04

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (616), Expect = 6e-82
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 122 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 181
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  239 bits (610), Expect = 4e-81
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 4e-80
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (602), Expect = 4e-80
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  235 bits (600), Expect = 1e-79
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 58
             + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA 
Sbjct: 3   WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 59  YNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
             +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D  
Sbjct: 63  QGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF 122

Query: 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154
            L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 123 WLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  233 bits (596), Expect = 5e-79
 Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 3/156 (1%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 134 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  209 bits (533), Expect = 2e-69
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 118 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 157
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  207 bits (527), Expect = 2e-68
 Identities = 90/161 (55%), Positives = 108/161 (67%), Gaps = 12/161 (7%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 193
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 194 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG 228
            L F  K L D   G +L+D     +  E+       L+ G
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSG 158

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  146 bits (370), Expect = 9e-45
 Identities = 74/78 (94%), Positives = 76/78 (97%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGDF 230
           IQKESTLHLVLRLRGG  
Sbjct: 61  IQKESTLHLVLRLRGGGG 78

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  201 bits (512), Expect = 7e-66
 Identities = 87/158 (55%), Positives = 96/158 (60%), Gaps = 10/158 (6%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
                    GK+I       D   N + K+  K G    +  + +        R L   +
Sbjct: 40  KGNLADVAPGKSIG-----GDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSD 94

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
                 L        G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 95  -----WLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 149

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 158
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG Q F K
Sbjct: 150 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  198 bits (504), Expect = 8e-65
 Identities = 90/179 (50%), Positives = 100/179 (55%), Gaps = 12/179 (6%)

Query: 50  LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 110 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 169
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 170 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (469), Expect = 5e-58
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 30  IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 84
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 85  TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 143
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 144 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 199 GKQLEDGRTLADYNIQKESTLHLVLRLR 226
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  149 bits (377), Expect = 4e-44
 Identities = 79/156 (50%), Positives = 96/156 (61%), Gaps = 6/156 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 59
             +  K   G  +  ++  +    +V+     ++  P     ++      L     L+  
Sbjct: 152 YIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKD 211

Query: 60  NIQKESTL-----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
             +K   +          + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 212 PNEKRDHMVLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 271

Query: 115 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150
           DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 272 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 5e-55
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 48  KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 106
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 107 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (432), Expect = 5e-55
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 182
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 183 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  139 bits (352), Expect = 7e-43
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86

Query: 60 NIQKESTLHLVLR 72
          +IQ   ++HLV  
Sbjct: 87 HIQDGHSVHLVKS 99

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  169 bits (429), Expect = 3e-54
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 71  LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 130
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 131 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 173
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  163 bits (414), Expect = 4e-52
 Identities = 75/100 (75%), Positives = 82/100 (82%), Gaps = 3/100 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+DYN
Sbjct: 10  FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYN 69

Query: 61  IQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 97
           IQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 70  IQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  154 bits (392), Expect = 8e-49
 Identities = 71/82 (86%), Positives = 75/82 (91%)

Query: 147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 206
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 207 TLADYNIQKESTLHLVLRLRGG 228
           TL+DYNIQ+ESTLHLVLRLRGG
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGG 85

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 7e-53
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1  MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 61 IQKESTLHLVLRLRGGMQ 78
            +      V    G   
Sbjct: 61 YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 7e-53
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 137 IQKESTLHLVLRLRGGMQ 154
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  164 bits (417), Expect = 4e-52
 Identities = 5/76 (6%), Positives = 19/76 (25%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 213 IQKESTLHLVLRLRGG 228
             +      V    G 
Sbjct: 61  YVQVRQPIFVAHTAGR 76

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  163 bits (414), Expect = 2e-52
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGK 87
          I   S LHLVL LRGG  +  K     
Sbjct: 61 ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  163 bits (414), Expect = 2e-52
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGK 163
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  157 bits (398), Expect = 6e-50
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 2e-51
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 94
          IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61 IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (408), Expect = 2e-51
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  149 bits (377), Expect = 1e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 4e-51
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 68  HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 128 DGRTLADYNIQKESTLHLVLRLRGG 152
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 4e-51
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 144 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 204 DGRTLADYNIQKESTLHLVLRLRGG 228
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  152 bits (385), Expect = 4e-48
 Identities = 66/76 (86%), Positives = 74/76 (97%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 69

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 70 IQKESTLHLVLRLRGG 85

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (403), Expect = 8e-51
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (403), Expect = 8e-51
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (403), Expect = 8e-51
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 9e-50
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 43  LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (398), Expect = 9e-50
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 119 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 178
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  149 bits (378), Expect = 1e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 2e-49
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 61 IQKESTLHLVLRLRGGMQIFVK 82
          ++  ST+ + LRLRGG++    
Sbjct: 65 LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  155 bits (394), Expect = 2e-49
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 137 IQKESTLHLVLRLRGGMQIFVK 158
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  147 bits (373), Expect = 3e-46
 Identities = 28/76 (36%), Positives = 44/76 (57%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 213 IQKESTLHLVLRLRGG 228
           ++  ST+ + LRLRGG
Sbjct: 65  LKPLSTVFMNLRLRGG 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  155 bits (393), Expect = 4e-49
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 136 NIQKESTLHLVLRLRGGMQI 155
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  152 bits (387), Expect = 3e-48
 Identities = 72/79 (91%), Positives = 75/79 (94%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 2  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61

Query: 61 IQKESTLHLVLRLRGGMQI 79
          IQKESTLHLVLRLRG   +
Sbjct: 62 IQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  152 bits (386), Expect = 4e-48
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRG 
Sbjct: 61  NIQKESTLHLVLRLRGY 77

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 6e-49
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 6e-49
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  152 bits (385), Expect = 4e-48
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 72

Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVLRLRGG
Sbjct: 73 ILGGSVLHLVLRLRGG 88

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 2e-48
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 2e-48
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  153 bits (388), Expect = 2e-48
 Identities = 70/76 (92%), Positives = 73/76 (96%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 61 IQKESTLHLVLRLRGG 76
          IQK STL L+LRLRGG
Sbjct: 64 IQKWSTLFLLLRLRGG 79

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 2e-48
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 61  IQKESTLHLVLRLRGGMQIFVK 82
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  153 bits (389), Expect = 2e-48
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 137 IQKESTLHLVLRLRGGMQIFVK 158
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  151 bits (384), Expect = 1e-47
 Identities = 21/76 (27%), Positives = 40/76 (52%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 213 IQKESTLHLVLRLRGG 228
           I K+  + +++     
Sbjct: 84  IPKDYVVQVIVSQPVQ 99

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 3e-48
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 61 IQKESTLHLVLRLRGG 76
          I   S L+L+L+LRGG
Sbjct: 64 IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 3e-48
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 137 IQKESTLHLVLRLRGG 152
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 3e-48
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 213 IQKESTLHLVLRLRGG 228
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  152 bits (385), Expect = 4e-48
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  152 bits (385), Expect = 4e-48
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  152 bits (385), Expect = 4e-48
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 8e-48
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTG 162
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (383), Expect = 1e-47
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTG 86
          +  +  +HLV R      +     +G
Sbjct: 66 VGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  147 bits (373), Expect = 3e-46
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+  +  +HLV R    
Sbjct: 64  YNVGGK-VIHLVERAPPQ 80

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (381), Expect = 2e-47
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 135 YNIQKESTLHLVLRLRGG 152
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (381), Expect = 2e-47
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 211 YNIQKESTLHLVLRLRGG 228
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  149 bits (378), Expect = 6e-47
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 61 IQKESTLHLVLRLRGG 76
          IQ   TL L  +   G
Sbjct: 68 IQDSDTLILSKKKGSG 83

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  149 bits (378), Expect = 5e-47
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 61 IQKESTLHLVLRLRG 75
          ++++S +H+V R R 
Sbjct: 61 LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  149 bits (378), Expect = 5e-47
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 137 IQKESTLHLVLRLRG 151
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  149 bits (378), Expect = 5e-47
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 213 IQKESTLHLVLRLRG 227
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 4e-46
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLR 148
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (372), Expect = 4e-46
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLR 224
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  143 bits (364), Expect = 8e-45
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 77

Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 78 VGGK-VIHLVER 88

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 6e-46
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 65  STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 125 QLEDGRTLADYNIQKESTLHLVLRLRGG 152
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 6e-46
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 141 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 201 QLEDGRTLADYNIQKESTLHLVLRLRGG 228
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  142 bits (359), Expect = 4e-44
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL    
Sbjct: 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 77

Query: 61 IQKESTLHLVLRLRGG 76
          ++  +TL +  R+ GG
Sbjct: 78 VEALTTLEVAGRMLGG 93

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 2e-45
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 134 DYNIQKESTLHLVLRL 149
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 2e-45
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 210 DYNIQKESTLHLVLRL 225
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  144 bits (365), Expect = 5e-45
 Identities = 29/73 (39%), Positives = 46/73 (63%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY+
Sbjct: 8  MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 67

Query: 61 IQKESTLHLVLRL 73
          I   S L+LV++ 
Sbjct: 68 IGPNSKLNLVVKP 80

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 9e-45
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 76  GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 9e-45
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 152 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  142 bits (361), Expect = 2e-44
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 8  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 67

Query: 59 YNIQKESTLHLVLRLRGG 76
          Y++     + L++R   G
Sbjct: 68 YDVGLNDIIQLLVRPDSG 85

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 3e-44
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 133 ADYNIQKESTLHLVLRLRG 151
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 3e-44
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 209 ADYNIQKESTLHLVLRLRG 227
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  141 bits (358), Expect = 4e-44
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 61 IQKESTLHLVLRLRG 75
          ++  ST+ + LRLRG
Sbjct: 65 LKPLSTVFMNLRLRG 79

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  145 bits (366), Expect = 7e-44
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1  MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKT 88
               T +L L+L GG +   K      
Sbjct: 60 ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  145 bits (366), Expect = 7e-44
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKT 164
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  142 bits (358), Expect = 1e-42
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 213 IQKESTLHLVLRLRGGD 229
                T +L L+L GG 
Sbjct: 60  ----VTYYLSLKLLGGK 72

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 2e-43
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGG 76
          +Y I +++ + +++     
Sbjct: 61 EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 2e-43
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 134 DYNIQKESTLHLVLRLRGG 152
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (355), Expect = 2e-43
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 3e-43
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKT 88
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 3e-43
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKT 164
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  138 bits (349), Expect = 2e-42
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 213 IQKESTLHLVLRLRGG 228
           ++   T+HLV++ +  
Sbjct: 77  VRDGLTVHLVIKRQHR 92

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 4e-43
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3  MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 60 NIQKESTLHLVLR 72
          +IQ   ++HLV  
Sbjct: 63 HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 4e-43
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 77  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 136 NIQKESTLHLVLR 148
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (352), Expect = 4e-43
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 212 NIQKESTLHLVLR 224
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 5e-43
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 59
          M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 60 NIQKESTLHLVL 71
           I   S + L +
Sbjct: 71 QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 5e-43
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 135
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 136 NIQKESTLHLVL 147
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (352), Expect = 5e-43
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 211
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 212 NIQKESTLHLVL 223
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  140 bits (354), Expect = 5e-43
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 57  ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 117 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  140 bits (354), Expect = 5e-43
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 133 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (352), Expect = 1e-42
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 2   QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
                 L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+
Sbjct: 37  DKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNM 96

Query: 62  QKESTLHLVLRLRGG 76
              + +HL L+ R G
Sbjct: 97  ASGAVIHLALKERSG 111

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 4e-42
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 75  GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 133 ADYNIQKESTLHLVLRL 149
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  136 bits (345), Expect = 4e-42
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 151 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 209 ADYNIQKESTLHLVLRL 225
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  133 bits (336), Expect = 9e-41
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1  MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 3  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 62

Query: 59 YNIQKESTLHLVLRL 73
          Y ++   T+ L++R 
Sbjct: 63 YEVRLNDTIQLLVRQ 77

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  138 bits (348), Expect = 6e-42
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 121 FAGKQLEDGRTL 132
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  138 bits (348), Expect = 6e-42
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 197 FAGKQLEDGRTL 208
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  132 bits (334), Expect = 6e-40
 Identities = 73/75 (97%), Positives = 75/75 (100%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  136 bits (344), Expect = 1e-41
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 58  DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 117 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  136 bits (344), Expect = 1e-41
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 134 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (342), Expect = 3e-41
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M++ VKT   K     V  + ++   K +I  +     DQ  LIFAGK L+D  TL+ + 
Sbjct: 26 MKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 84

Query: 61 IQKESTLHLVLR 72
          I    T+HLV++
Sbjct: 85 IHDGLTVHLVIK 96

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (337), Expect = 1e-40
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 61 IQKESTLHLVLRLR 74
          ++   T+HLV++ +
Sbjct: 82 VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (337), Expect = 1e-40
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 137 IQKESTLHLVLRLR 150
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (337), Expect = 1e-40
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 213 IQKESTLHLVLRLR 226
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 2e-40
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 58 DYNIQKESTLHLVL-RLRGG 76
          DY I +++ + +++ + + G
Sbjct: 66 DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 2e-40
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 134 DYNIQKESTLHLVL-RLRGG 152
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  132 bits (335), Expect = 2e-40
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 210 DYNIQKESTLHLVL-RLRGG 228
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 6e-40
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 61  IQKESTLHLVLRLRGG 76
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 6e-40
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 137 IQKESTLHLVLRLRGG 152
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  132 bits (334), Expect = 6e-40
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 213 IQKESTLHLVLRLRGG 228
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  131 bits (331), Expect = 1e-39
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18 IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 61 IQKESTLHLVLRLRGG 76
          I   ST+H+V+R   G
Sbjct: 77 ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  131 bits (331), Expect = 1e-39
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 137 IQKESTLHLVLRLRGG 152
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  131 bits (331), Expect = 1e-39
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 213 IQKESTLHLVLRLRGG 228
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 6e-39
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2  VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 61 IQKESTLHLVLR 72
          ++    +  ++ 
Sbjct: 62 LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 6e-39
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 137 IQKESTLHLVLR 148
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (326), Expect = 6e-39
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 213 IQKESTLHLVLR 224
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  122 bits (307), Expect = 4e-36
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 63  KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 123 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 154
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  121 bits (306), Expect = 5e-36
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 199 GKQL-EDGRTLADYNIQKESTLHLVLR 224
           G +L +D R L +Y I + S + + L+
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLK 87

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  119 bits (301), Expect = 3e-35
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++G +L +D R L +Y
Sbjct: 16 IHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74

Query: 60 NIQKESTLHLVLRLRGGMQ 78
           I + S + + L+     +
Sbjct: 75 GITEFSEIVVFLKSINRAK 93

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 3e-35
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 1   MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 59  YNIQKESTLHLVLRLRGGMQ 78
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 3e-35
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 77  MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 135 YNIQKESTLHLVLRLRGGMQ 154
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  119 bits (301), Expect = 4e-35
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 153 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  115 bits (287), Expect = 2e-30
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 131
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 132 LADYNIQKESTLHLVLRLRGGMQ 154
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  114 bits (286), Expect = 2e-30
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 207
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 208 LADYNIQKESTLHLVLRLRGG 228
           + DY I +++ + +++     
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKA 86

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  113 bits (284), Expect = 4e-30
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 8  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 67

Query: 58 DYNIQKESTLHLVLRLRGGMQ 78
          DY I +++ + +++      Q
Sbjct: 68 DYRIDEKNFVVVMVTKTKAGQ 88

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (262), Expect = 2e-29
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 61 IQKESTLHLV 70
          +   + L L+
Sbjct: 72 VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (262), Expect = 2e-29
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 137 IQKESTLHLV 146
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (262), Expect = 2e-29
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 213 IQKESTLHLV 222
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.4 bits (229), Expect = 2e-24
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 76  GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 130
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 131 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 90.4 bits (224), Expect = 9e-24
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 1  MQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 55
          M I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
          L  Y ++    + L+ +   G++   +T +G
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 90.0 bits (223), Expect = 1e-23
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 152 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 206
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 207 TLADYNIQKESTLHLVLRLRGG 228
           +L  Y ++    + L+ +   G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVG 88

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 5e-21
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 132
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 133 ADYNIQKESTLHLVL 147
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.2 bits (205), Expect = 5e-21
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 208
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 209 ADYNIQKESTLHLVL 223
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 81.3 bits (200), Expect = 3e-20
 Identities = 13/72 (18%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADY 59
          M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L   
Sbjct: 9  MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL 68

Query: 60 NIQKESTLHLVL 71
          ++ K ++L+++ 
Sbjct: 69 HLPKNNSLYVLT 80

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-18
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27 VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 61 IQKE-STLHLVL 71
          +++   + +L L
Sbjct: 87 VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-18
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 137 IQKE-STLHLVL 147
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 76.6 bits (188), Expect = 2e-18
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 213 IQKE-STLHLVL 223
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 3e-15
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1  MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 60 NI-------QKESTLHLVLRLRGGMQ 78
                   Q  +T+ L  R     +
Sbjct: 61 GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.9 bits (168), Expect = 3e-15
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 77  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 136 NI-------QKESTLHLVLRLRGGMQ 154
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.1 bits (166), Expect = 4e-15
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 212 NI-------QKESTLHLVLRLRG 227
                    Q  +T+ L  R   
Sbjct: 61  GFTSQTARPQAPATVGLAFRADD 83

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 7e-14
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 75  GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 130
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 131 TLADYNIQKES--TLHLVLRLRGG 152
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 7e-14
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 151 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 206
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 207 TLADYNIQKES--TLHLVLRLRGG 228
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 7e-14
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 1  MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 56
          + + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D + L
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 57 ADYNIQKES--TLHLVLRLRGG 76
           D   ++E    LHLV  ++ G
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSG 89

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 8e-14
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 61 IQKESTLHLV 70
          +   + + +V
Sbjct: 76 VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 8e-14
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 137 IQKESTLHLV 146
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 8e-14
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 213 IQKESTLHLV 222
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 9e-14
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 52
          + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 53 GRTLADYNIQKEST--LHLVLR 72
            TL    +    T  +HLV R
Sbjct: 78 NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 9e-14
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 129 GRTLADYNIQKEST--LHLVLR 148
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 64.7 bits (157), Expect = 9e-14
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 205 GRTLADYNIQKEST--LHLVLR 224
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 61 IQKESTLHL 69
          +  ++ L L
Sbjct: 82 VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 137 IQKESTLHL 145
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 213 IQKESTLHL 221
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 61 IQKESTLHLV 70
          ++   T+ ++
Sbjct: 67 MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 137 IQKESTLHLV 146
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 213 IQKESTLHLV 222
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 4e-13
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 75  GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 122
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 123 GKQLEDGRTLADYNIQKESTLHLV 146
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.0 bits (153), Expect = 4e-13
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 151 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 198
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 199 GKQLEDGRTLADYNIQKESTLHLV 222
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 60.3 bits (146), Expect = 4e-12
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 1  MQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGK 48
          M        T       +E    +  +++++K K++   G   D  R+          G+
Sbjct: 3  MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGE 62

Query: 49 QLEDGRTLADYNIQKESTLHLV 70
            +  ++L D  ++    +H V
Sbjct: 63 LTDGAKSLKDLGVRDGYRIHAV 84

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 8e-13
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 52
          + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53 GRTLADYNIQ--KESTLHLVLR 72
            TL    +   K + +HLV R
Sbjct: 77 NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 8e-13
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 129 GRTLADYNIQ--KESTLHLVLR 148
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 8e-13
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 205 GRTLADYNIQ--KESTLHLVLR 224
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 1  MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 49
          +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17 VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 50 LEDGRTLADYNIQKESTLHLVLR 72
          L+D +TL  Y IQ  ST+H++ +
Sbjct: 77 LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 77  MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 125
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 126 LEDGRTLADYNIQKESTLHLVLR 148
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 153 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 201
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 202 LEDGRTLADYNIQKESTLHLVLR 224
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 61 IQKESTLHL 69
          I     L L
Sbjct: 89 IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 137 IQKESTLHL 145
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 213 IQKESTLHL 221
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 133
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 134 DYNIQKESTLHLVLR 148
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 209
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 210 DYNIQKESTLHLVLR 224
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+  
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64

Query: 60 NIQKESTLHLVLR 72
          NI     +H    
Sbjct: 65 NITNNCVIHCHRS 77

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 1  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 56
          + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 57 AD--YNIQKESTLHLV 70
           D      +   +HLV
Sbjct: 84 KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 77  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 132
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 133 AD--YNIQKESTLHLV 146
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 153 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 208
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 209 AD--YNIQKESTLHLV 222
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 1  MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 56
          + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8  LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 57 ADYNIQKESTLHLV 70
              ++  + + ++
Sbjct: 67 GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 77  MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 132
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 133 ADYNIQKESTLHLV 146
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 153 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 208
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 209 ADYNIQKESTLHLV 222
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 45
          M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 75
          AG++L ED + L DY I+    +  + +L  
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 121
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 122 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 151
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 197
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 198 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 227
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 56
          ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2  RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 57 ADYNIQKESTL 67
           D  IQ    L
Sbjct: 62 GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 132
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 133 ADYNIQKESTL 143
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 208
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 209 ADYNIQKESTL 219
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 61  IQKESTLHLVLRLRGGM 77
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 137 IQKESTLHLVLRLRGGM 153
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 12/76 (15%), Positives = 33/76 (43%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 213 IQKESTLHLVLRLRGG 228
           ++ +  +  ++   GG
Sbjct: 87  MEDDDVIDAMVEQTGG 102

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 58
            L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22 ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 59 YNIQKESTLHLV 70
          ++      LH++
Sbjct: 82 FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 134
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 135 YNIQKESTLHLV 146
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 210
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 211 YNIQKESTLHLV 222
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 64  ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 116
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 117 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 148
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 140 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 192
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 193 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 224
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 13/67 (19%)

Query: 19  SSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQ------KES 65
            + T+  +K  +     ++KE  P    + +LI AGK LE+ +T+ DY           +
Sbjct: 36  DATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVT 95

Query: 66  TLHLVLR 72
           T+H++++
Sbjct: 96  TMHVIIQ 102

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 66
          GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14 GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 67 L 67
          L
Sbjct: 74 L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 142
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 143 L 143
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 218
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 219 L 219
           L
Sbjct: 74  L 74

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 13/78 (16%), Positives = 34/78 (43%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 213 IQKESTLHLVLRLRGGDF 230
           ++ E T+ +  +  GG +
Sbjct: 66  MEDEDTIDVFQQQTGGVY 83

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 61 IQKESTLHLVLRLRGGMQI 79
          ++ E T+ +  +  GG+ +
Sbjct: 66 MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 137 IQKESTLHLVLRLRGGMQI 155
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 75  GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 128
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 129 GRTLADYNIQKESTLHLV 146
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 151 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 204
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 205 GRTLADYNIQKESTLHLV 222
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLV 70
          S   + ++   +++  G+P   Q+LIF GK L E    L+   IQ    + L+
Sbjct: 30 SEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 61 IQKESTLHLVLRLRGG 76
          +++E  + +     GG
Sbjct: 82 MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 137 IQKESTLHLVLRLRGG 152
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 213 IQKESTLHLVLRLRGG 228
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 20 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 70
          S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28 SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 96  SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 146
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 172 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 222
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 32/76 (42%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 25  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 84

Query: 61  IQKESTLHLVLRLRGG 76
           ++ E T+ +  +   G
Sbjct: 85  MEDEDTIDVFQQQTSG 100

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 32/76 (42%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 25  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 84

Query: 137 IQKESTLHLVLRLRGG 152
           ++ E T+ +  +   G
Sbjct: 85  MEDEDTIDVFQQQTSG 100

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 32/76 (42%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 25  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 84

Query: 213 IQKESTLHLVLRLRGG 228
           ++ E T+ +  +   G
Sbjct: 85  MEDEDTIDVFQQQTSG 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.84
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.83
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.83
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.83
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.82
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.82
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.82
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.82
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.82
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.81
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.81
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.81
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.81
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.81
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.81
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.81
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.81
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.8
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.8
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.8
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.8
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.8
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.79
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.79
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.79
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.79
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.79
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.79
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.79
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.79
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.79
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.78
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.78
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.78
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.78
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.78
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.78
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.78
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.78
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.78
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.78
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.77
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.77
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.77
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.77
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.77
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.77
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.77
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.77
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.77
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.76
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.76
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.76
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.76
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.76
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.76
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.76
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.76
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.76
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.76
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.76
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.75
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.75
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.75
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.75
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.75
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.75
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.75
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.75
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.75
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.74
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.6
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.74
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.74
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.74
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.74
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.73
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.58
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.73
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.73
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.73
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.73
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.73
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.73
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.72
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.72
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.72
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.72
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.72
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.72
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.72
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.72
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.71
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.71
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.71
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.71
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.71
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.71
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.71
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.7
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.7
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.69
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.69
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.69
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.69
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.69
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.69
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.69
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.69
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.69
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.69
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.68
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.67
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.67
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.67
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.67
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.67
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.66
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.66
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.66
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.66
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.66
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.65
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.65
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.63
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.63
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.63
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.63
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.63
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.63
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.63
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.63
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.62
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.62
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.61
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.61
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.61
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.61
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.6
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.6
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.59
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.59
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.58
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.58
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.58
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.57
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.57
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.56
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.56
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.55
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.55
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.55
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.55
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.53
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.51
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.51
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.5
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.5
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.5
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.48
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.46
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.46
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.45
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.45
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.44
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.4
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.4
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.4
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.38
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.38
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.37
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.37
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.33
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.32
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.3
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.3
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.29
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.26
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.26
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.25
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.15
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	99.08
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	99.06
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.99
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.93
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.89
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.87
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.8
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.79
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.71
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.65
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.62
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.59
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.57
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.56
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.51
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.5
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.47
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	98.45
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	98.35
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	98.29
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	98.29
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.29
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.23
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.23
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.23
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	98.2
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.19
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	98.14
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	98.04
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	98.03
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.87
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.85
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	97.82
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.73
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.59
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.4
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	97.37
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	97.32
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.16
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	96.9
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	96.86
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	96.85
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	96.81
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	96.76
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	96.64
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	96.56
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	96.43
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	96.35
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	96.17
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.89
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	95.64
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.5
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	95.36
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	95.3
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	95.04
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	94.97
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	94.94
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	94.86
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.76
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	94.63
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	93.91
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	93.9
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	93.85
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	93.85
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	93.7
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	93.68
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	93.66
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	93.64
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	93.17
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	92.45
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	92.34
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	92.33
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	92.25
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	92.1
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	91.83
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	91.77
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	91.75
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	91.5
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	91.42
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	91.38
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	91.32
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	90.81
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	90.54
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	90.51
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	89.95
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	89.83
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	89.8
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	89.74
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	89.7
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	89.66
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	89.23
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	89.01
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	87.63
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	87.45
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	87.33
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	87.02
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	86.91
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	85.26
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	85.23
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	84.38
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	84.21
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	84.05
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	83.51
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	82.56
1wgy_A	104	RAP guanine nucleotide exchange factor 5; ubiquiti	82.51
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	82.35
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	82.13
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	81.79
2inc_C	83	TOUB protein; DIIRON, 4-helix bundle, carboxylate	81.21

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=1.5e-38  Score=238.48  Aligned_cols=153  Identities=34%  Similarity=0.505  Sum_probs=147.0

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-e-cCcccCCCccHhhhccccCCceEEEEE-eecce
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM  153 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~-~g~~L~d~~tL~~~~i~~~~~i~l~~~-~~~~~  153 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++++ ++++|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m   82 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL   82 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence            78999999999999999999999999999999999999999999 9 799999999999999999999999999 58999


Q ss_pred             eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      .|+|+..+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||+
T Consensus        83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~  158 (159)
T 3rt3_B           83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG  158 (159)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999995

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=3.1e-38  Score=236.79  Aligned_cols=152  Identities=34%  Similarity=0.508  Sum_probs=146.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-e-ccccccCCccccccccccccceeeeee-ecCce
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM   77 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~-~g~~l~d~~tl~~~~i~~~~~i~l~~~-~~~~~   77 (230)
                      |+|+|++++|+++++++++++||++||++|++.+|+||++|+|+ | +|+.|+|+.+|++|||.+++++++.++ +++.|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m   82 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL   82 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence            79999999999999999999999999999999999999999999 9 799999999999999999999999999 58899


Q ss_pred             eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      +|+|+..+|+.+.+++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++++.+|
T Consensus        83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG  157 (159)
T 3rt3_B           83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG  157 (159)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998876

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=240.05  Aligned_cols=155  Identities=94%  Similarity=1.292  Sum_probs=146.7

Q ss_pred             cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecce
Q 026940           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ...|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+++
T Consensus        18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~   97 (172)
T 3u30_A           18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM   97 (172)
T ss_dssp             -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .++|+..+|+++++++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+|||
T Consensus        98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A           98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=236.25  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=145.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..++|.++
T Consensus        21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~  100 (172)
T 3u30_A           21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF  100 (172)
T ss_dssp             EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      |+..+|+.+.+++++++||++||++|+.++|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+++++|
T Consensus       101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A          101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999888764

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=1.3e-36  Score=226.37  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=148.0

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecceeEE
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  156 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~  156 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|+++++..+..+++.|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       157 v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |+..+|+.+.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=2.4e-36  Score=224.85  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=147.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++.+|+.+++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..+..++|.|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      |+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..++++|
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999988764

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=123.86  Aligned_cols=77  Identities=35%  Similarity=0.569  Sum_probs=74.7

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      ..|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++|
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999987

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.83  E-value=9.9e-21  Score=127.26  Aligned_cols=77  Identities=56%  Similarity=0.940  Sum_probs=72.2

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      |.|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999995

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.83  E-value=2.8e-20  Score=125.16  Aligned_cols=88  Identities=28%  Similarity=0.519  Sum_probs=71.8

Q ss_pred             ccccCCceEEEEEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCC
Q 026940          136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK  215 (230)
Q Consensus       136 ~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~  215 (230)
                      |+.+++.+++.++.+..|.|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~   79 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G   79 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence            456788889998988899999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCEEEEEEE
Q 026940          216 ESTLHLVLR  224 (230)
Q Consensus       216 ~~~i~l~~~  224 (230)
                      |++|+++.|
T Consensus        80 g~~i~lv~R   88 (88)
T 4eew_A           80 GKVIHLVER   88 (88)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999875

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.7e-21  Score=137.11  Aligned_cols=101  Identities=74%  Similarity=0.991  Sum_probs=94.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      .+|+|+.++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..++.+++.++
T Consensus        10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~   89 (114)
T 2kdi_A           10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG   89 (114)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred             EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             EE---eccCeeEeeecCCCChHHH
Q 026940           81 VK---TLTGKTITLEVESSDTIDN  101 (230)
Q Consensus        81 v~---~~~g~~~~i~v~~~~tV~~  101 (230)
                      ++   ...|+++.+++.+++||++
T Consensus        90 ~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           90 AADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             ccccccccCceEEEEeccccccCC
Confidence            87   4568889999988888763

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.82  E-value=4.4e-20  Score=122.68  Aligned_cols=77  Identities=22%  Similarity=0.364  Sum_probs=70.7

Q ss_pred             EEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       147 ~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      ...+..|.|+|++..|+++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|.+
T Consensus        16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~   92 (93)
T 3plu_A           16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   92 (93)
T ss_dssp             ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence            34456689999999999999999999999999999999999999999999999999999999999999999999875

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.82  E-value=3.3e-20  Score=122.24  Aligned_cols=74  Identities=35%  Similarity=0.574  Sum_probs=71.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+++.+++++++||++||++|+..+|+||++|+|+|+|+.|+|+.+|++|||.++++++++++..
T Consensus         5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~   78 (79)
T 3phx_B            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR   78 (79)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred             EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998764

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.82  E-value=4e-20  Score=124.26  Aligned_cols=80  Identities=84%  Similarity=1.240  Sum_probs=70.1

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      .+|.|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||+.
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~   87 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL   87 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999963

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.82  E-value=3.6e-20  Score=123.16  Aligned_cols=73  Identities=33%  Similarity=0.473  Sum_probs=70.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccc-ccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~-l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.|+|++++|+.+++++++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||.++++|++.++|
T Consensus        11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A           11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            7999999999999999999999999999999999999999999999999 999999999999999999998764

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.82  E-value=4.8e-20  Score=122.47  Aligned_cols=70  Identities=23%  Similarity=0.433  Sum_probs=68.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~   70 (230)
                      |+|+|+...|+.+.++++|++||++||++|+++.|+||++|+|.|+|+.|+|..||++|+|.+|++++|.
T Consensus        22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999999999999999999999999999999999986

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.81  E-value=4.5e-20  Score=124.16  Aligned_cols=78  Identities=58%  Similarity=0.980  Sum_probs=75.5

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus        11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            458899999999999999999999999999999999999999999999999999999999999999999999999998

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.81  E-value=6e-20  Score=123.40  Aligned_cols=76  Identities=57%  Similarity=0.952  Sum_probs=72.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|++++|+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.++
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg   76 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC--
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987654

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.81  E-value=8.4e-20  Score=119.32  Aligned_cols=76  Identities=57%  Similarity=0.952  Sum_probs=71.8

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            5789998899999999999999999999999999999999999999999999999999999999999999999998

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.81  E-value=9.2e-20  Score=125.06  Aligned_cols=92  Identities=82%  Similarity=1.095  Sum_probs=74.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++|++..+..++..+.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~   80 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN   80 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             EEeccCeeEeee
Q 026940           81 VKTLTGKTITLE   92 (230)
Q Consensus        81 v~~~~g~~~~i~   92 (230)
                      .++.+|+.-.++
T Consensus        81 ~~~v~~~~~~~~   92 (98)
T 1yx5_B           81 SSSVDKLAAALE   92 (98)
T ss_dssp             ------------
T ss_pred             cccCCCchhhhh
Confidence            888877655443

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.81  E-value=8e-20  Score=122.09  Aligned_cols=78  Identities=78%  Similarity=1.131  Sum_probs=72.4

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      .|.|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|++||+
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~   80 (85)
T 3n3k_B            3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG   80 (85)
T ss_dssp             -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999984

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=7.7e-20  Score=125.36  Aligned_cols=78  Identities=95%  Similarity=1.288  Sum_probs=75.1

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..|.|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus        21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            458899999999999999999999999999999999999999999999999999999999999999999999999998

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.81  E-value=1.2e-19  Score=124.15  Aligned_cols=78  Identities=94%  Similarity=1.270  Sum_probs=73.6

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      +|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~   78 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA   78 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999985

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.81  E-value=1.6e-19  Score=117.93  Aligned_cols=76  Identities=95%  Similarity=1.320  Sum_probs=73.6

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999998

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.80  E-value=1.7e-19  Score=121.04  Aligned_cols=80  Identities=34%  Similarity=0.531  Sum_probs=76.6

Q ss_pred             ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      +..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+++||.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~   84 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999996

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.80  E-value=1e-19  Score=119.85  Aligned_cols=77  Identities=18%  Similarity=0.425  Sum_probs=73.8

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .|.|+|++.+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++++++||
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999998

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.80  E-value=1.9e-19  Score=120.28  Aligned_cols=78  Identities=90%  Similarity=1.216  Sum_probs=74.8

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      .|.|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~   80 (85)
T 3mtn_B            3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG   80 (85)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred             eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999984

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.80  E-value=1.3e-19  Score=121.81  Aligned_cols=79  Identities=35%  Similarity=0.566  Sum_probs=71.6

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+++||.
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~   81 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL   81 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence            4588999999999999999999999999999999999999999999999999999999999999999999999999984

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.80  E-value=9.4e-21  Score=133.25  Aligned_cols=104  Identities=73%  Similarity=0.983  Sum_probs=96.8

Q ss_pred             cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecce
Q 026940           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      .+.++|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..++.+++
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEE---eccCceeEEEeeccccHHH
Q 026940          154 QIFVK---TLTGKTITLEVESSDTIDN  177 (230)
Q Consensus       154 ~i~v~---~~~~~~~~i~v~~~~tV~~  177 (230)
                      .++++   ...|+++++++.++.||.+
T Consensus        87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           87 MGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             eeeccccccccCceEEEEeccccccCC
Confidence            88887   4468889999999988864

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.79  E-value=4.4e-19  Score=119.53  Aligned_cols=80  Identities=36%  Similarity=0.610  Sum_probs=75.6

Q ss_pred             cceeEEEEeccC-ceeEE-EeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~-~~~~i-~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..|.|+|+..+| +.+.+ ++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus         6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A            6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            458899999888 69999 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026940          229 DF  230 (230)
Q Consensus       229 ~~  230 (230)
                      .+
T Consensus        86 ~~   87 (89)
T 1wy8_A           86 PS   87 (89)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.79  E-value=1.9e-19  Score=121.09  Aligned_cols=88  Identities=28%  Similarity=0.519  Sum_probs=71.4

Q ss_pred             ccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhcccc
Q 026940           60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK  139 (230)
Q Consensus        60 ~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~  139 (230)
                      |..+++.+++.++.+..|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++ +
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~   79 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G   79 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence            456778888888888899999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCceEEEEE
Q 026940          140 ESTLHLVLR  148 (230)
Q Consensus       140 ~~~i~l~~~  148 (230)
                      |++||++.|
T Consensus        80 g~~i~lv~R   88 (88)
T 4eew_A           80 GKVIHLVER   88 (88)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999864

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.79  E-value=2.4e-19  Score=122.61  Aligned_cols=79  Identities=18%  Similarity=0.407  Sum_probs=76.0

Q ss_pred             ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...|.|+|++.+|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++++++||
T Consensus        19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            3458899999999999999999999999999999999999999999999999999999999999999999999999998

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.79  E-value=4.1e-19  Score=116.00  Aligned_cols=74  Identities=55%  Similarity=0.918  Sum_probs=71.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.++..
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~   74 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR   74 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998764

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.4e-19  Score=120.60  Aligned_cols=73  Identities=22%  Similarity=0.429  Sum_probs=69.6

Q ss_pred             CEEEEEccCCcEEEEEec--CCCcHHHHHHHh-hhhhCCCCCceEEEeccccccCCcccccccc-ccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~--~~~tv~~lK~~i-~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i-~~~~~i~l~~~~   73 (230)
                      |+|+||+..|++++++++  +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++.+++
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence            899999999999998866  999999999999 9999999999999999999999999999999 799999999876

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.79  E-value=3.9e-19  Score=120.70  Aligned_cols=79  Identities=27%  Similarity=0.420  Sum_probs=74.4

Q ss_pred             ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEecCC
Q 026940          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...|.|+|+..++ ++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+++.+++||
T Consensus        13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg   91 (94)
T 2kan_A           13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR   91 (94)
T ss_dssp             SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred             CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence            3568899998777 899999999999999999999999999999999999999999 99999999999999999999998


Q ss_pred             C
Q 026940          229 D  229 (230)
Q Consensus       229 ~  229 (230)
                      .
T Consensus        92 ~   92 (94)
T 2kan_A           92 A   92 (94)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.79  E-value=4.7e-19  Score=124.06  Aligned_cols=77  Identities=95%  Similarity=1.307  Sum_probs=74.0

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .|.|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus        35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999998

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.79  E-value=3.4e-19  Score=120.54  Aligned_cols=73  Identities=92%  Similarity=1.257  Sum_probs=71.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus        18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl   90 (91)
T 3v6c_B           18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   90 (91)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998875

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.79  E-value=2.7e-19  Score=125.42  Aligned_cols=78  Identities=94%  Similarity=1.272  Sum_probs=74.3

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..|.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            458899998899999999999999999999999999999999999999999999999999999999999999999998

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.78  E-value=2e-19  Score=121.94  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |+|+|+++.|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||.++++|+|..
T Consensus        29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            78999999999999999999999999999999999999999999999999999999999999999999863

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=4.7e-19  Score=119.02  Aligned_cols=75  Identities=87%  Similarity=1.259  Sum_probs=69.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++|++.+++.+
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G   84 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   84 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999887643

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.78  E-value=2.8e-19  Score=121.33  Aligned_cols=78  Identities=37%  Similarity=0.629  Sum_probs=71.8

Q ss_pred             eecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       149 ~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +...|.|+|+.  |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus        16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            34558899997  8899999999999999999999999999999999999999999999999999999999999999998

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.78  E-value=4.5e-19  Score=119.22  Aligned_cols=75  Identities=57%  Similarity=0.958  Sum_probs=72.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus        13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G   87 (88)
T 3dbh_I           13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG   87 (88)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999988653

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=4.4e-19  Score=116.51  Aligned_cols=73  Identities=36%  Similarity=0.643  Sum_probs=70.1

Q ss_pred             CEEEEEccCCcEE-EEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~-~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+.+ +++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++
T Consensus         3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            7999999999985 999 999999999999999999999999999999999999999999999999999998875

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.78  E-value=8e-19  Score=114.60  Aligned_cols=75  Identities=95%  Similarity=1.308  Sum_probs=72.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++.+
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G   75 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG   75 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987643

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.78  E-value=4.1e-19  Score=119.36  Aligned_cols=74  Identities=35%  Similarity=0.574  Sum_probs=70.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+..
T Consensus         5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~   78 (88)
T 2hj8_A            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR   78 (88)
T ss_dssp             EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999988764

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.78  E-value=6.3e-19  Score=119.23  Aligned_cols=76  Identities=91%  Similarity=1.259  Sum_probs=73.0

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      ..|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+|
T Consensus        16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence            4588999999999999999999999999999999999999999999999999999999999999999999999876

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=5.9e-19  Score=120.95  Aligned_cols=75  Identities=97%  Similarity=1.322  Sum_probs=72.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+
T Consensus        23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G   97 (98)
T 4hcn_B           23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   97 (98)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988653

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.78  E-value=6e-19  Score=119.11  Aligned_cols=73  Identities=34%  Similarity=0.601  Sum_probs=70.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+..+|+++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++||| ++++||++++.+
T Consensus         6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~   78 (90)
T 4dwf_A            6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP   78 (90)
T ss_dssp             EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence            7899999999999999999999999999999999999999999999999999999999999 899999998764

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.77  E-value=9.8e-19  Score=119.48  Aligned_cols=79  Identities=91%  Similarity=1.240  Sum_probs=73.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI   79 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v   79 (230)
                      |+|+|+..+|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++++..++...
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~   80 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL   80 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999988766543

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=6.8e-19  Score=117.52  Aligned_cols=75  Identities=80%  Similarity=1.153  Sum_probs=71.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G   78 (85)
T 3n3k_B            4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG   78 (85)
T ss_dssp             CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988743

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.1e-18  Score=118.19  Aligned_cols=75  Identities=23%  Similarity=0.301  Sum_probs=68.3

Q ss_pred             eEEEEecc----CceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          154 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       154 ~i~v~~~~----~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ++.|+..+    +++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|++|++| ++++++|..
T Consensus        17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~   95 (100)
T 1wju_A           17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS   95 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred             EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence            45555555    6789999999999999999999999999999999999999999999999999999999 888888764

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.77  E-value=1.7e-18  Score=116.89  Aligned_cols=77  Identities=32%  Similarity=0.560  Sum_probs=72.9

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..|.|+|+..+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++|+++.+.+++
T Consensus         4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~   80 (90)
T 4dwf_A            4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ   80 (90)
T ss_dssp             CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred             cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence            458899999999999999999999999999999999999999999999999999999999999 89999999998766

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.77  E-value=7e-19  Score=115.84  Aligned_cols=75  Identities=17%  Similarity=0.425  Sum_probs=71.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.||++|++.++++|+++++..+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G   78 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   78 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999987643

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.4e-18  Score=115.98  Aligned_cols=75  Identities=92%  Similarity=1.241  Sum_probs=72.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~G   78 (85)
T 3mtn_B            4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRG   78 (85)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999988643

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.7e-18  Score=114.45  Aligned_cols=73  Identities=40%  Similarity=0.690  Sum_probs=70.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|+++++.+++
T Consensus         8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998765

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=2.4e-18  Score=113.00  Aligned_cols=75  Identities=36%  Similarity=0.657  Sum_probs=70.7

Q ss_pred             cceeEEEEeccCcee-EEE-eeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          151 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~-~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      ++|.|+|+..+|+.+ .++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            468999999999985 999 999999999999999999999999999999999999999999999999999999885

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.3e-18  Score=116.68  Aligned_cols=75  Identities=33%  Similarity=0.510  Sum_probs=72.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.+
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G   82 (87)
T 1wh3_A            8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred             EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999988754

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=1.4e-18  Score=117.92  Aligned_cols=80  Identities=29%  Similarity=0.473  Sum_probs=73.0

Q ss_pred             cceeEEEEeccCc--eeEEEeeccccHHHHHHHhcccc--CCCCCceEEEEcCeecCCCCccccc--CCCCCCEEEEEEE
Q 026940          151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~--~~~i~v~~~~tV~~lK~~i~~~~--~~~~~~q~L~~~g~~L~d~~tL~~~--~i~~~~~i~l~~~  224 (230)
                      ..|.|+|+..+++  .+.+++++++||.+||++|++.+  ++|+++|+|+|+|+.|+|+.+|++|  +|+++++|+|+.+
T Consensus         6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence            3578999988888  56666779999999999999998  9999999999999999999999999  9999999999999


Q ss_pred             ecCCCC
Q 026940          225 LRGGDF  230 (230)
Q Consensus       225 ~~gg~~  230 (230)
                      ++||.+
T Consensus        86 ~~gg~~   91 (93)
T 1wgd_A           86 VKSGPS   91 (93)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            999863

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=1.5e-18  Score=115.29  Aligned_cols=74  Identities=32%  Similarity=0.472  Sum_probs=70.8

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCee-cCCCCcccccCCCCCCEEEEEEE
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~-L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .-|+|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+. |+|+++|++|||++|++|+++++
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence            358999999999999999999999999999999999999999999999999 99999999999999999999875

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.76  E-value=2.4e-18  Score=129.14  Aligned_cols=124  Identities=65%  Similarity=0.873  Sum_probs=93.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++.+|+.+.+++++++||.+||++|++.+|+||++|+|+|+|+.|+|+.+|++|||.+++++|++++..++..-.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~   80 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET   80 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998765555


Q ss_pred             EEec-cC--eeEeeecCCCChHHHHHHHHHhHhCCC-CCCcEEEecCcccCC
Q 026940           81 VKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLED  128 (230)
Q Consensus        81 v~~~-~g--~~~~i~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d  128 (230)
                      |+.. .|  ....+.+.++.++.+-.+.    ..+. -+..++.|.-+.|.+
T Consensus        81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~----~~i~~~~~~~~~fsl~yl~~  128 (169)
T 3l0w_B           81 IKFVADGDIGSGSVIIKPFVDMEHPETS----IKLEMDQPVDLTFGAKYLLD  128 (169)
T ss_dssp             EEEEEECSSCEEEEEECCBCCSSCGGGC----BEEEESSCEEEEEEHHHHHH
T ss_pred             ccccccCcccceeEEEecCCCCCCcccc----eEEecCCcceEEEhHHHHHH
Confidence            5432 22  2345666666555322211    1111 133456666665544

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=1.7e-18  Score=117.52  Aligned_cols=74  Identities=28%  Similarity=0.472  Sum_probs=70.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+| ++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||.++++|++++++.+
T Consensus        16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g   90 (94)
T 2kan_A           16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN   90 (94)
T ss_dssp             EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred             EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence            6899999987 999999999999999999999999999999999999999999 9999999999999999988754

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=3.6e-18  Score=116.36  Aligned_cols=73  Identities=30%  Similarity=0.597  Sum_probs=70.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+.+.+++++++||++||++|+..   .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++.++.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~   76 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence            899999999999999999999999999999999   8999999999999999999999999999999999998765

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.76  E-value=2.1e-18  Score=118.23  Aligned_cols=91  Identities=81%  Similarity=1.094  Sum_probs=74.0

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecceeEE
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  156 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~i~  156 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..+|..+.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~   80 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN   80 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCceeEE
Q 026940          157 VKTLTGKTITL  167 (230)
Q Consensus       157 v~~~~~~~~~i  167 (230)
                      .++.+|+.-.+
T Consensus        81 ~~~v~~~~~~~   91 (98)
T 1yx5_B           81 SSSVDKLAAAL   91 (98)
T ss_dssp             -----------
T ss_pred             cccCCCchhhh
Confidence            88877665443

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.76  E-value=1.9e-18  Score=120.45  Aligned_cols=77  Identities=29%  Similarity=0.450  Sum_probs=69.7

Q ss_pred             eeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCC-------CCCEEEEEEE
Q 026940          153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~~  224 (230)
                      |.++++...++ ++.+++++++||.+||++|+.+.|+|+++|||+|+|+.|+|++||++|||+       ++++|++++|
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            45666666665 589999999999999999999999999999999999999999999999999       7999999999


Q ss_pred             ecCCCC
Q 026940          225 LRGGDF  230 (230)
Q Consensus       225 ~~gg~~  230 (230)
                       .||.|
T Consensus        81 -~~g~f   85 (118)
T 2fnj_B           81 -ADDTF   85 (118)
T ss_dssp             -SSSCB
T ss_pred             -CCCce
Confidence             77754

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.76  E-value=1.5e-18  Score=117.67  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=68.8

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      |.|+|++..|+++.+++++++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|||++|++|+|.+
T Consensus        29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            88999999999999999999999999999999999999999999999999999999999999999999874

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.76  E-value=2.9e-18  Score=118.89  Aligned_cols=77  Identities=30%  Similarity=0.458  Sum_probs=69.3

Q ss_pred             eeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCC-------CCEEEEEEE
Q 026940          153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~-------~~~i~l~~~  224 (230)
                      |.++++...++ ++.+++++++||.+||++|+.+.|+|+++|||+|+|+.|+|++||++|||++       +++|+|++|
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            45666666655 7889999999999999999999999999999999999999999999999999       999999999


Q ss_pred             ecCCCC
Q 026940          225 LRGGDF  230 (230)
Q Consensus       225 ~~gg~~  230 (230)
                      . +|.|
T Consensus        81 ~-~~~f   85 (118)
T 4ajy_B           81 A-DDTF   85 (118)
T ss_dssp             C-SSCC
T ss_pred             c-CCCc
Confidence            7 5543

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.2e-18  Score=121.04  Aligned_cols=74  Identities=22%  Similarity=0.437  Sum_probs=70.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++++|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++..
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998753

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=2.8e-18  Score=115.57  Aligned_cols=76  Identities=37%  Similarity=0.627  Sum_probs=71.7

Q ss_pred             CEEEEEccCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940            1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|+..+| +++.+ ++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.++
T Consensus         8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A            8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            7899999999 79999 5999999999999999999999999999999999999999999999999999999887543

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.75  E-value=3.2e-18  Score=114.26  Aligned_cols=74  Identities=30%  Similarity=0.531  Sum_probs=69.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+.+.+++++++||++||++|+..   +|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..+.+
T Consensus         6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~   82 (85)
T 2wyq_A            6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT   82 (85)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred             EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence            789999999999999999999999999999998   89999999999999999999999999999999999987653

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.75  E-value=2e-18  Score=120.91  Aligned_cols=80  Identities=33%  Similarity=0.459  Sum_probs=75.5

Q ss_pred             ecceeEEEEec---cCceeEEEeec-cccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          150 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       150 ~~~~~i~v~~~---~~~~~~i~v~~-~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      ++.|.|+|+..   +|+.+.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++++
T Consensus        25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~  104 (111)
T 1we6_A           25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred             CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence            45678888887   78999999998 999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 026940          226 RGGD  229 (230)
Q Consensus       226 ~gg~  229 (230)
                      +||.
T Consensus       105 ~GGk  108 (111)
T 1we6_A          105 RSGP  108 (111)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9996

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.75  E-value=2.9e-18  Score=120.05  Aligned_cols=75  Identities=96%  Similarity=1.311  Sum_probs=72.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+.++|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+
T Consensus        36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G  110 (111)
T 3vdz_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  110 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999988653

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.75  E-value=2.6e-18  Score=119.18  Aligned_cols=73  Identities=30%  Similarity=0.450  Sum_probs=70.0

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccccc-------ccceeeeee
Q 026940            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~-------~~~i~l~~~   72 (230)
                      |.||++...++ ++.+++.+++||.+||++|+...|+||++|+|+|+|+.|+|++||++|||.+       ++++||+++
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            88999999887 8899999999999999999999999999999999999999999999999999       999999987


Q ss_pred             e
Q 026940           73 L   73 (230)
Q Consensus        73 ~   73 (230)
                      .
T Consensus        81 ~   81 (118)
T 4ajy_B           81 A   81 (118)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.75  E-value=2.2e-18  Score=117.78  Aligned_cols=75  Identities=17%  Similarity=0.425  Sum_probs=71.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|.|+.||++|+|.++++|+++++..+
T Consensus        22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G   96 (97)
T 1wyw_B           22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   96 (97)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999987643

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.75  E-value=2.4e-18  Score=117.08  Aligned_cols=73  Identities=21%  Similarity=0.423  Sum_probs=68.1

Q ss_pred             CEEEEEccCCcEEEE--EecCCCcHHHHHHHh-hhhhCCCCCceEEEeccccccCCcccccccc-ccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~--~v~~~~tv~~lK~~i-~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i-~~~~~i~l~~~~   73 (230)
                      |+|+||+.+|+.|++  ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|++.++.
T Consensus        20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   96 (98)
T ss_dssp             EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence            789999999998877  556999999999999 9999999999999999999999999999999 999999998764

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.75  E-value=4.6e-18  Score=127.58  Aligned_cols=77  Identities=96%  Similarity=1.316  Sum_probs=73.3

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      |.|+|+..+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~   77 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   77 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999984

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.75  E-value=4.9e-18  Score=111.17  Aligned_cols=72  Identities=33%  Similarity=0.559  Sum_probs=68.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+. +|+.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++||+.+|+++++..++
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            6899999 89999999999999999999999999999999999999999999999999999999999987653

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.75  E-value=3.5e-18  Score=115.88  Aligned_cols=73  Identities=36%  Similarity=0.599  Sum_probs=69.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+.  |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.+
T Consensus        20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G   92 (93)
T 2l7r_A           20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG   92 (93)
T ss_dssp             CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred             EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            7899998  899999999999999999999999999999999999999999999999999999999999988653

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.74  E-value=2.4e-18  Score=130.46  Aligned_cols=82  Identities=91%  Similarity=1.230  Sum_probs=78.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCceeeE
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++.++..++
T Consensus       106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f  185 (189)
T 3q3f_A          106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF  185 (189)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred             eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999988777776


Q ss_pred             EE
Q 026940           81 VK   82 (230)
Q Consensus        81 v~   82 (230)
                      |+
T Consensus       186 vk  187 (189)
T 3q3f_A          186 TK  187 (189)
T ss_dssp             CC
T ss_pred             Ee
Confidence            64

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.60  E-value=9.8e-20  Score=119.07  Aligned_cols=74  Identities=34%  Similarity=0.600  Sum_probs=71.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.++++
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr   74 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR   74 (76)
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998764

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.74  E-value=8.2e-18  Score=118.55  Aligned_cols=70  Identities=29%  Similarity=0.586  Sum_probs=67.2

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      +|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||..
T Consensus        44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk~  113 (115)
T 1we7_A           44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGPS  113 (115)
T ss_dssp             SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCCS
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCC
Confidence            4788999999999999999999999999999999999999999999999999999999999999999963

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=6.7e-18  Score=111.61  Aligned_cols=76  Identities=39%  Similarity=0.684  Sum_probs=71.6

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      ..|.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++
T Consensus         6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~   81 (81)
T 2dzi_A            6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL   81 (81)
T ss_dssp             SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            4588999988899999999999999999999999999999999999999999999999999999999999998753

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.74  E-value=4.6e-18  Score=118.46  Aligned_cols=72  Identities=29%  Similarity=0.451  Sum_probs=67.9

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccc-------cccceeeeee
Q 026940            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~-------~~~~i~l~~~   72 (230)
                      |++||+...|+ ++++++++++||.+||++|+.++|||+++|+|+|+|+.|+|++||++|||.       .+++++|+++
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            88999998876 599999999999999999999999999999999999999999999999999       6899998876

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.74  E-value=6.6e-18  Score=128.05  Aligned_cols=82  Identities=89%  Similarity=1.190  Sum_probs=78.0

Q ss_pred             EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      ...+.|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++|
T Consensus       101 ~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrG  180 (189)
T 3q3f_A          101 TDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  180 (189)
T ss_dssp             SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred             ccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026940          228 GD  229 (230)
Q Consensus       228 g~  229 (230)
                      |.
T Consensus       181 G~  182 (189)
T 3q3f_A          181 GG  182 (189)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.6e-17  Score=113.05  Aligned_cols=76  Identities=29%  Similarity=0.567  Sum_probs=71.1

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccc---cCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~---~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|+|+..+|+.+.+++++++||.+||++|++.   .|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+...|
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~   79 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA   79 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence            678999999999999999999999999999999   7899999999999999999999999999999999999876543

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.58  E-value=2.1e-19  Score=117.46  Aligned_cols=75  Identities=33%  Similarity=0.588  Sum_probs=72.1

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      |.|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++|
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            578899889999999999999999999999999999999999999999999999999999999999999999987

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.1e-17  Score=114.91  Aligned_cols=78  Identities=33%  Similarity=0.435  Sum_probs=73.1

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..|.|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.++++|.
T Consensus        21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p   98 (100)
T 1yqb_A           21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA   98 (100)
T ss_dssp             TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred             CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence            4588999988876 79999999999999999999999999999999999999999999999999999999999999874

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.73  E-value=2.2e-17  Score=110.10  Aligned_cols=77  Identities=29%  Similarity=0.494  Sum_probs=70.7

Q ss_pred             ecceeEEEEeccCceeEEEeeccccHHHHHHHhccc---cCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~---~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      +..|.|+|+..+|+.+.+++++++||.+||++|++.   .|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+..
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~   82 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT   82 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence            356899999999999999999999999999999998   88999999999999999999999999999999999988743

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=2.2e-18  Score=118.31  Aligned_cols=77  Identities=25%  Similarity=0.396  Sum_probs=71.6

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC---------------CceEEEEcCeecC-CCCcccccCCCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQK  215 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~---------------~~q~L~~~g~~L~-d~~tL~~~~i~~  215 (230)
                      .|.|+|+..+|++++++|++++||++||++|+++.++|+               ++|+|+|+|+.|. |++||++|||++
T Consensus         7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~   86 (105)
T 1v2y_A            7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN   86 (105)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred             cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence            489999999999999999999999999999999999887               4579999999995 679999999999


Q ss_pred             CCEEEEEEEecCC
Q 026940          216 ESTLHLVLRLRGG  228 (230)
Q Consensus       216 ~~~i~l~~~~~gg  228 (230)
                      |++|+|+.+++|.
T Consensus        87 g~~l~lv~~lr~~   99 (105)
T 1v2y_A           87 RDEVSFIKKLGQK   99 (105)
T ss_dssp             SEEEEEEECSCSC
T ss_pred             CCEEEEEehhccC
Confidence            9999999999875

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2.1e-18  Score=118.55  Aligned_cols=93  Identities=31%  Similarity=0.514  Sum_probs=67.0

Q ss_pred             CccHhhhccccCCceEEEEEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcc
Q 026940          129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  208 (230)
Q Consensus       129 ~~tL~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL  208 (230)
                      ..++++|.|..  +.++.....-.+.|.|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|
T Consensus         7 ~~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL   83 (101)
T 3m63_B            7 HHPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV   83 (101)
T ss_dssp             ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred             cCCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence            34678888764  444444444456778886 889999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEE
Q 026940          209 ADYNIQKESTLHLVLR  224 (230)
Q Consensus       209 ~~~~i~~~~~i~l~~~  224 (230)
                      ++|||++|++|+++.+
T Consensus        84 ~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           84 ESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTTCCTTEEEEECCC
T ss_pred             HHCCCCCCCEEEEEeC
Confidence            9999999999998764

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.73  E-value=2.5e-17  Score=112.08  Aligned_cols=76  Identities=21%  Similarity=0.416  Sum_probs=69.3

Q ss_pred             ecceeEEEEeccCceeEEE--eeccccHHHHHHHh-ccccCCCCCceEEEEcCeecCCCCcccccCC-CCCCEEEEEEEe
Q 026940          150 RGGMQIFVKTLTGKTITLE--VESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL  225 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~--v~~~~tV~~lK~~i-~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~~  225 (230)
                      ...|.|+|++.+|+.++++  +++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++||| ++|++|+++++.
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   96 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence            4668999999999987775  55999999999999 8888999999999999999999999999999 999999998864

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.73  E-value=8e-18  Score=112.04  Aligned_cols=73  Identities=22%  Similarity=0.429  Sum_probs=68.4

Q ss_pred             eeEEEEeccCceeEEEee--ccccHHHHHHHh-ccccCCCCCceEEEEcCeecCCCCcccccCC-CCCCEEEEEEEe
Q 026940          153 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~--~~~tV~~lK~~i-~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~~  225 (230)
                      |.|+|++.+|++++++++  +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|++..+.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence            689999999999988866  999999999999 9999999999999999999999999999999 699999998763

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.72  E-value=5.5e-18  Score=115.71  Aligned_cols=78  Identities=27%  Similarity=0.333  Sum_probs=73.7

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..|.|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++||.
T Consensus        16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~   93 (96)
T 1wx8_A           16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP   93 (96)
T ss_dssp             CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred             CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence            3478888877 89999999999999999999999999999999999999999999999999999999999999999885

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=9.5e-18  Score=116.48  Aligned_cols=74  Identities=28%  Similarity=0.525  Sum_probs=71.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..
T Consensus        24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~   97 (106)
T 1ttn_A           24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   97 (106)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999988653

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.72  E-value=3.7e-18  Score=117.14  Aligned_cols=75  Identities=24%  Similarity=0.395  Sum_probs=69.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---------------ceEEEecccccc-CCccccccccccc
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE   64 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---------------~q~l~~~g~~l~-d~~tl~~~~i~~~   64 (230)
                      |+|+|++++|+.++++|++++||++||++|++.+|+||.               +|+|+|+|+.|. |+.+|++|||.++
T Consensus         8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g   87 (105)
T 1v2y_A            8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence            899999999999999999999999999999999999984               569999999996 6699999999999


Q ss_pred             cceeeeeeecC
Q 026940           65 STLHLVLRLRG   75 (230)
Q Consensus        65 ~~i~l~~~~~~   75 (230)
                      ++||++.+..+
T Consensus        88 ~~l~lv~~lr~   98 (105)
T 1v2y_A           88 DEVSFIKKLGQ   98 (105)
T ss_dssp             EEEEEEECSCS
T ss_pred             CEEEEEehhcc
Confidence            99999987753

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.72  E-value=2.2e-17  Score=115.57  Aligned_cols=93  Identities=80%  Similarity=1.042  Sum_probs=82.3

Q ss_pred             ccccccceeeeeee--------cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCcc
Q 026940           60 NIQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT  131 (230)
Q Consensus        60 ~i~~~~~i~l~~~~--------~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~t  131 (230)
                      ++.+|+++++...+        ...|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|+|+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t   90 (111)
T 2ojr_A           11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT   90 (111)
T ss_dssp             SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred             ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence            45566666666553        2469999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccccCCceEEEEEeecc
Q 026940          132 LADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus       132 L~~~~i~~~~~i~l~~~~~~~  152 (230)
                      |++|++.+|++|++.+++.+|
T Consensus        91 L~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           91 LSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             TTTTTCCTTCEEEEEECCCC-
T ss_pred             HHHcCCCCCCEEEEEEeCCCC
Confidence            999999999999999987764

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.1e-17  Score=116.05  Aligned_cols=74  Identities=22%  Similarity=0.437  Sum_probs=69.6

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      |.|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++..
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999998754

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.4e-17  Score=114.27  Aligned_cols=74  Identities=35%  Similarity=0.490  Sum_probs=69.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++..+
T Consensus        23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence            68999999886 799999999999999999999999999999999999999999999999999999999987643

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=2.5e-17  Score=114.39  Aligned_cols=79  Identities=27%  Similarity=0.463  Sum_probs=74.2

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..|.|+|+..+|+.+.+++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+...+.
T Consensus        22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~  100 (106)
T 1ttn_A           22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN  100 (106)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence            4588999999999999999999999999999999999999999999999999999999999999999999999877653

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.6e-17  Score=112.74  Aligned_cols=74  Identities=28%  Similarity=0.464  Sum_probs=69.3

Q ss_pred             CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhh--CCCCCceEEEeccccccCCcccccc--ccccccceeeeeeec
Q 026940            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~--gi~~~~q~l~~~g~~l~d~~tl~~~--~i~~~~~i~l~~~~~   74 (230)
                      |.|+|++.+|+  .+.+++++++||.+||++|++.+  |+|+++|+|+|+|+.|+|+.+|++|  +|.++++|||++++.
T Consensus         8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~   87 (93)
T 1wgd_A            8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence            78999999988  67777779999999999999999  9999999999999999999999999  999999999998764

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.71  E-value=2.5e-17  Score=113.28  Aligned_cols=73  Identities=33%  Similarity=0.450  Sum_probs=69.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+.. |+.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..++.
T Consensus        26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            68999998 89999999999999999999999999999999999999999999999999999999999988764

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=2.7e-17  Score=117.23  Aligned_cols=78  Identities=29%  Similarity=0.364  Sum_probs=69.5

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..|.|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|.+|||++|++|+++.+++||.
T Consensus        31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~  108 (125)
T 1j8c_A           31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS  108 (125)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred             CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence            3478888887 88999999999999999999999999999999999999999999999999999999999999999884

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.71  E-value=4.2e-17  Score=106.65  Aligned_cols=71  Identities=34%  Similarity=0.574  Sum_probs=67.7

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      |.|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            7888888 8999999999999999999999999999999999999999999999999999999999998765

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=1.1e-17  Score=114.12  Aligned_cols=74  Identities=27%  Similarity=0.349  Sum_probs=70.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++++++.+
T Consensus        18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~   91 (96)
T 1wx8_A           18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS   91 (96)
T ss_dssp             EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred             EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence            78999998 999999999999999999999999999999999999999999999999999999999999987643

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.71  E-value=6.9e-19  Score=126.39  Aligned_cols=77  Identities=96%  Similarity=1.299  Sum_probs=0.5

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      |.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||.
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~   77 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI   77 (128)
T ss_dssp             ----------------------------------------------------------------------------C
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence            56889989999999999999999999999999999999999999999999999999999999999999999999995

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=2.1e-17  Score=113.99  Aligned_cols=79  Identities=20%  Similarity=0.375  Sum_probs=72.0

Q ss_pred             cceeEEEEeccC----ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEe
Q 026940          151 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       151 ~~~~i~v~~~~~----~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~~~~  225 (230)
                      ..|.|+|+..++    +.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ ++|++|||++|++|+++.+.
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~   85 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence            347788887644    6899999999999999999999999999999999999999877 79999999999999999999


Q ss_pred             cCCC
Q 026940          226 RGGD  229 (230)
Q Consensus       226 ~gg~  229 (230)
                      +||.
T Consensus        86 ~gg~   89 (102)
T 1v5o_A           86 NVGL   89 (102)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.71  E-value=5.6e-17  Score=111.52  Aligned_cols=81  Identities=30%  Similarity=0.358  Sum_probs=73.0

Q ss_pred             EEeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       147 ~~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      ......|.|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+++
T Consensus        20 ~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           20 QGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             ---CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             CCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            34456688999987 88899999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CC
Q 026940          227 GG  228 (230)
Q Consensus       227 gg  228 (230)
                      +.
T Consensus        99 ~~  100 (101)
T 2klc_A           99 NR  100 (101)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=4.1e-17  Score=113.33  Aligned_cols=78  Identities=33%  Similarity=0.435  Sum_probs=72.5

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..|.|+|+..+++ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|.+|||++|++|+|+.++++|.
T Consensus        16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~   93 (106)
T 1wx7_A           16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA   93 (106)
T ss_dssp             SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred             ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence            3478888887775 78999999999999999999999999999999999999999999999999999999999999874

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.70  E-value=3.6e-17  Score=114.54  Aligned_cols=75  Identities=32%  Similarity=0.445  Sum_probs=71.1

Q ss_pred             CEEEEEcc---CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~---~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.   +|+.+.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++..+
T Consensus        28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~G  106 (111)
T 1we6_A           28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERS  106 (111)
T ss_dssp             EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCC
T ss_pred             EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence            68999998   89999999998 99999999999999999999999999999999999999999999999999987643

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.69  E-value=6.1e-17  Score=110.59  Aligned_cols=72  Identities=24%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccc-ccccceeeeee
Q 026940            1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i-~~~~~i~l~~~   72 (230)
                      |+|+|+...+  ..++++++|++||++||++|++++|+||++|||+++|+.++|+.||++||| .+|+++||++.
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence            6799999874  799999999999999999999999999999999999999999999999999 59999999874

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.69  E-value=1.4e-18  Score=124.72  Aligned_cols=74  Identities=97%  Similarity=1.310  Sum_probs=0.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+++.++|++++||++||++|++.+|+||++|+|+|+|+.|+|+.+|++|||.++++|++++++.
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~   74 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (128)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998764

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=6.5e-17  Score=115.25  Aligned_cols=73  Identities=32%  Similarity=0.418  Sum_probs=69.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+.. |+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++.+..
T Consensus        33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~  105 (125)
T 1j8c_A           33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD  105 (125)
T ss_dssp             EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred             EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence            68999999 99999999999999999999999999999999999999999999999999999999999988764

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.69  E-value=1.5e-16  Score=112.12  Aligned_cols=79  Identities=25%  Similarity=0.449  Sum_probs=71.9

Q ss_pred             cceeEEEEeccCcee-EEEeeccccHHHHHHHh-----ccccCCCC--CceEEEEcCeecCCCCcccccCCCCC------
Q 026940          151 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------  216 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~-~i~v~~~~tV~~lK~~i-----~~~~~~~~--~~q~L~~~g~~L~d~~tL~~~~i~~~------  216 (230)
                      ..|.|.++..+|+.+ ++++++++||.+||++|     +++.|+|+  ++|||+|.|+.|+|++||++|+|++|      
T Consensus        15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v   94 (126)
T 1se9_A           15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV   94 (126)
T ss_dssp             CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred             ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence            568899999999888 79999999999999999     56667886  79999999999999999999999998      


Q ss_pred             CEEEEEEEecCCC
Q 026940          217 STLHLVLRLRGGD  229 (230)
Q Consensus       217 ~~i~l~~~~~gg~  229 (230)
                      ++++|+++++||.
T Consensus        95 ~tmhlVlrl~g~~  107 (126)
T 1se9_A           95 TTMHVIIQAPVTE  107 (126)
T ss_dssp             EEEEEEECCCSSC
T ss_pred             EEEEEEeccCCcc
Confidence            7899999999874

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.69  E-value=1.5e-18  Score=127.35  Aligned_cols=77  Identities=96%  Similarity=1.316  Sum_probs=0.0

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      |.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++||+
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg   77 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   77 (152)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence            56889988999999999999999999999999999999999999999999999999999999999999999999984

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.9e-17  Score=113.77  Aligned_cols=92  Identities=32%  Similarity=0.524  Sum_probs=66.8

Q ss_pred             ccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHh
Q 026940           54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA  133 (230)
Q Consensus        54 ~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~  133 (230)
                      ...++|.|..  +..+.....-.+.|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+
T Consensus         8 ~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~   84 (101)
T 3m63_B            8 HPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE   84 (101)
T ss_dssp             -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred             CCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence            4567787764  444444444457777876 8899999999999999999999999999999999999999999999999


Q ss_pred             hhccccCCceEEEEE
Q 026940          134 DYNIQKESTLHLVLR  148 (230)
Q Consensus       134 ~~~i~~~~~i~l~~~  148 (230)
                      +|||++|++|+++.+
T Consensus        85 ~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           85 SYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTCCTTEEEEECCC
T ss_pred             HCCCCCCCEEEEEeC
Confidence            999999999998754

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=5.6e-17  Score=109.90  Aligned_cols=70  Identities=24%  Similarity=0.310  Sum_probs=63.1

Q ss_pred             EEEEccC----CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            3 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         3 v~v~~~~----g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      +.|+..+    |+.++++|++++||.+||++|++++|+||++|+|+|+|+.|+|+.||++|+|.++++| +++++
T Consensus        18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~l   91 (100)
T 1wju_A           18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLEL   91 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECC
T ss_pred             EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEE
Confidence            4455555    7799999999999999999999999999999999999999999999999999999999 44443

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=6.2e-17  Score=112.42  Aligned_cols=73  Identities=36%  Similarity=0.503  Sum_probs=69.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+..+|+ +.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+..
T Consensus        18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~   90 (106)
T 1wx7_A           18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ   90 (106)
T ss_dssp             EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCC
T ss_pred             EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            78999999886 79999999999999999999999999999999999999999999999999999999988764

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=5.2e-17  Score=111.95  Aligned_cols=74  Identities=19%  Similarity=0.372  Sum_probs=68.8

Q ss_pred             CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|    +.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+ .+|++|||.++++|++..+..
T Consensus         8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~   86 (102)
T 1v5o_A            8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN   86 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred             EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence            7899999754    7999999999999999999999999999999999999999987 799999999999999987764

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=8.8e-17  Score=112.30  Aligned_cols=74  Identities=24%  Similarity=0.419  Sum_probs=67.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCC--CCCceEEEeccccccCCccccccccccc--cceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi--~~~~q~l~~~g~~l~d~~tl~~~~i~~~--~~i~l~   70 (230)
                      |.|+|+++.|++++++|++++||++||++|++      ..|+  |+++|+|+|+|+.|+|+.||++|+|..+  +++||+
T Consensus        17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv   96 (116)
T 1wgh_A           17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            68999999999999999999999999999999      6675  6999999999999999999999999755  678888


Q ss_pred             eeec
Q 026940           71 LRLR   74 (230)
Q Consensus        71 ~~~~   74 (230)
                      +++.
T Consensus        97 lr~~  100 (116)
T 1wgh_A           97 ARET  100 (116)
T ss_dssp             ECSS
T ss_pred             ccCC
Confidence            7763

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.68  E-value=1.1e-16  Score=106.48  Aligned_cols=71  Identities=28%  Similarity=0.438  Sum_probs=66.6

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      ++++.++|+.+.+++++++||++||++|++.+|+||++|+|+|+|+.|+|+.+|++||+.++++|++...+
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~   84 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ   84 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence            56777899999999999999999999999999999999999999999999999999999999999987653

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.67  E-value=3.3e-18  Score=125.60  Aligned_cols=74  Identities=97%  Similarity=1.310  Sum_probs=0.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++++++.
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~   74 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (152)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998874

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.67  E-value=7.9e-17  Score=108.47  Aligned_cols=72  Identities=21%  Similarity=0.412  Sum_probs=68.2

Q ss_pred             CEEEEEccCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCceEEE---eccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+. +|+.+.+ ++++++||.+||++|++.+|+||++|+|+   |+|+.|+|+.+|++|+|.++++|+|...+
T Consensus         8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence            7899996 7899999 99999999999999999999999999999   99999999999999999999999998765

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.67  E-value=1.7e-16  Score=111.82  Aligned_cols=75  Identities=27%  Similarity=0.469  Sum_probs=68.5

Q ss_pred             CEEEEEccCCcEE-EEEecCCCcHHHHHHHh-----hhhhCCCC--CceEEEeccccccCCccccccccccc------cc
Q 026940            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST   66 (230)
Q Consensus         1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i-----~~~~gi~~--~~q~l~~~g~~l~d~~tl~~~~i~~~------~~   66 (230)
                      |.|+|++.+|+.+ ++++++++||.+||++|     ++..|+|+  ++|+|+|+|+.|+|+.||++|+|..+      ++
T Consensus        17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t   96 (126)
T 1se9_A           17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   96 (126)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence            6899999999888 79999999999999999     67889997  89999999999999999999999988      67


Q ss_pred             eeeeeeecC
Q 026940           67 LHLVLRLRG   75 (230)
Q Consensus        67 i~l~~~~~~   75 (230)
                      +||++++..
T Consensus        97 mhlVlrl~g  105 (126)
T 1se9_A           97 MHVIIQAPV  105 (126)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEeccCC
Confidence            888887753

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=109.00  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=66.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.++++.++|+++++++++++||++||++|++++||||++|+|.+ .+..|+|+.+|++|+|.+|+++||++..
T Consensus         9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred             eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence            678888999999999999999999999999999999999999985 3334999999999999999999998765

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=1.1e-16  Score=108.88  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+. .|+.+ .+++++++||.+||++|++.+|+|+++|+|+|.|+.|.|+ +|++|||.++++|+|.....
T Consensus         8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~   80 (96)
T 1wgg_A            8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred             EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence            6899995 78999 6999999999999999999999999999999999999999 99999999999999987653

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.66  E-value=1.6e-16  Score=112.54  Aligned_cols=74  Identities=24%  Similarity=0.403  Sum_probs=67.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCCC--CCceEEEeccccccCCcccccccccccc--ceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi~--~~~q~l~~~g~~l~d~~tl~~~~i~~~~--~i~l~   70 (230)
                      |.|+|++..|+++++++++++||++||++|++      +.|+|  +++|+|+|+|+.|+|+.||++|+|..++  ++||+
T Consensus        18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv   97 (125)
T 2gow_A           18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   97 (125)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            67999999999999999999999999999999      78885  8999999999999999999999999665  67888


Q ss_pred             eeec
Q 026940           71 LRLR   74 (230)
Q Consensus        71 ~~~~   74 (230)
                      +++.
T Consensus        98 ~r~~  101 (125)
T 2gow_A           98 ARET  101 (125)
T ss_dssp             ECSC
T ss_pred             ecCC
Confidence            7764

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=4.7e-16  Score=108.58  Aligned_cols=78  Identities=23%  Similarity=0.357  Sum_probs=68.7

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhcc------ccCC--CCCceEEEEcCeecCCCCcccccCCCCC--CEEE
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLH  220 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~------~~~~--~~~~q~L~~~g~~L~d~~tL~~~~i~~~--~~i~  220 (230)
                      ..|.|++++.+|+++++++++++||.+||++|++      +.++  |+++|||+|.|+.|+|+.||++|+|+.+  +++|
T Consensus        15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlh   94 (116)
T 1wgh_A           15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH   94 (116)
T ss_dssp             SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEE
T ss_pred             CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence            4588999999999999999999999999999998      4564  6999999999999999999999999876  5677


Q ss_pred             EEEEecCC
Q 026940          221 LVLRLRGG  228 (230)
Q Consensus       221 l~~~~~gg  228 (230)
                      |++|+.+.
T Consensus        95 Lvlr~~~~  102 (116)
T 1wgh_A           95 LVARETLP  102 (116)
T ss_dssp             EEECSSCS
T ss_pred             EEccCCCC
Confidence            88776644

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.66  E-value=2.9e-16  Score=111.20  Aligned_cols=78  Identities=23%  Similarity=0.362  Sum_probs=70.1

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhcc------ccCC--CCCceEEEEcCeecCCCCcccccCCCCCC--EEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHL  221 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~------~~~~--~~~~q~L~~~g~~L~d~~tL~~~~i~~~~--~i~l  221 (230)
                      .|.|++++.+|+++++++++++||.+||++|++      +.|+  |+++|+|+|.|+.|+|+.||++|+|+.|+  +++|
T Consensus        17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhl   96 (125)
T 2gow_A           17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL   96 (125)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred             eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence            378888889999999999999999999999999      6677  48999999999999999999999999776  7889


Q ss_pred             EEEecCCC
Q 026940          222 VLRLRGGD  229 (230)
Q Consensus       222 ~~~~~gg~  229 (230)
                      +++++++.
T Consensus        97 v~r~~~~~  104 (125)
T 2gow_A           97 VARETLPE  104 (125)
T ss_dssp             EECSCCSS
T ss_pred             EecCCCCc
Confidence            99887653

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.66  E-value=4.8e-16  Score=106.13  Aligned_cols=72  Identities=24%  Similarity=0.253  Sum_probs=65.1

Q ss_pred             eeEEEEeccC--ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCC-CCCCEEEEEEE
Q 026940          153 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i-~~~~~i~l~~~  224 (230)
                      +.|+|+...+  .++++++++++||++||++|++++|+|+++|||+|+|+.++|++||.+||| ++|++++|++.
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence            5566666554  688999999999999999999999999999999999999999999999999 59999999875

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.66  E-value=1.2e-16  Score=108.95  Aligned_cols=70  Identities=24%  Similarity=0.382  Sum_probs=64.5

Q ss_pred             CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhh-hCCCC-CceEEEeccccccCCcccccc--ccccccceeee
Q 026940            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~-~gi~~-~~q~l~~~g~~l~d~~tl~~~--~i~~~~~i~l~   70 (230)
                      |.|+||+.+|+  .+++++++++||.+||++|++. .|+|| ++|+|+|+|+.|+|+.+|++|  +|.++++|+|+
T Consensus        24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            68999999988  6799999999999999999996 57665 999999999999999999999  99999999874

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=3.6e-16  Score=107.70  Aligned_cols=74  Identities=16%  Similarity=0.300  Sum_probs=68.3

Q ss_pred             eeEEEE-eccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          153 MQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       153 ~~i~v~-~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      +++.|+ ..+++.+.++++++.||.+||+.++...++|+++|+|+|+|+.|+|+.||.+|||++|.+|+|+.+..
T Consensus        16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~   90 (118)
T 2daf_A           16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST   90 (118)
T ss_dssp             EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred             EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence            556666 45688999999999999999999999999999999999999999999999999999999999999854

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.65  E-value=6.7e-16  Score=102.73  Aligned_cols=70  Identities=29%  Similarity=0.452  Sum_probs=64.8

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..++..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++..
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            4455678999999999999999999999999999999999999999999999999999999999988753

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.63  E-value=6.7e-16  Score=104.42  Aligned_cols=73  Identities=23%  Similarity=0.429  Sum_probs=67.1

Q ss_pred             CEEEEEccCCcEEEEEecCC-----CcHHHHHHHhhhhhCCCCCceEEEeccccccC-Cccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~-----~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d-~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+. .|+.+.++++++     +||.+||++|+..+|+|+++|+|+|.|+.|.| +.+|++|||.++++|++.....
T Consensus         8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~   86 (92)
T 1wxv_A            8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN   86 (92)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred             EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence            6899998 589999999996     99999999999999999999999999999998 5689999999999999987653

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.63  E-value=4.2e-16  Score=106.23  Aligned_cols=72  Identities=24%  Similarity=0.369  Sum_probs=64.2

Q ss_pred             cceeEEEEeccCc--eeEEEeeccccHHHHHHHhccc-cCCC-CCceEEEEcCeecCCCCccccc--CCCCCCEEEEE
Q 026940          151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV  222 (230)
Q Consensus       151 ~~~~i~v~~~~~~--~~~i~v~~~~tV~~lK~~i~~~-~~~~-~~~q~L~~~g~~L~d~~tL~~~--~i~~~~~i~l~  222 (230)
                      ..|.|+|+..+++  .+++++++++||.+||++|+++ .|.| +++|||+|+|+.|+|+.+|++|  +|++|++|+|+
T Consensus        22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            5588999998887  5788899999999999999986 4655 5999999999999999999999  99999999874

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=2.8e-16  Score=106.78  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=65.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+ .+|+.+.+++++++||.+||++|+..+|+|+++|+|+|.|+.|+ +.+|++|+|.++++|+|+...
T Consensus        18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence            578898 57899999999999999999999999999999999999999995 459999999999999997654

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=4.7e-16  Score=108.04  Aligned_cols=74  Identities=28%  Similarity=0.401  Sum_probs=68.5

Q ss_pred             CEEEEEccCC---cEEEEEecC---------CCcHHHHHHHhhhhh--CCCCCc-eEEEeccccccCCcccccccccccc
Q 026940            1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES   65 (230)
Q Consensus         1 m~v~v~~~~g---~~~~~~v~~---------~~tv~~lK~~i~~~~--gi~~~~-q~l~~~g~~l~d~~tl~~~~i~~~~   65 (230)
                      |+|+||..+|   +.+.+++++         ++||.+||++|+..+  |+|+++ |+|+|+|+.|+|+.+|++||+.+++
T Consensus        13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~   92 (107)
T 1x1m_A           13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS   92 (107)
T ss_dssp             CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred             eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence            6899999998   899999555         599999999999999  999999 9999999999999999999999999


Q ss_pred             ceeeeeeec
Q 026940           66 TLHLVLRLR   74 (230)
Q Consensus        66 ~i~l~~~~~   74 (230)
                      +||++.+..
T Consensus        93 ~i~lv~~~~  101 (107)
T 1x1m_A           93 TVHVLRKSW  101 (107)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEeCCC
Confidence            999988653

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.63  E-value=6.2e-16  Score=104.06  Aligned_cols=72  Identities=22%  Similarity=0.452  Sum_probs=67.3

Q ss_pred             ceeEEEEeccCceeEE-EeeccccHHHHHHHhccccCCCCCceEEE---EcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          152 GMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i-~v~~~~tV~~lK~~i~~~~~~~~~~q~L~---~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .|.|+|+. .|+.+.+ ++++++||.+||++|++.+|+|+++|+|+   |+|+.|+|+.+|++|||++|++|+|+..
T Consensus         7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A            7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence            47888884 7899999 99999999999999999999999999999   9999999999999999999999998754

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=6.7e-16  Score=105.06  Aligned_cols=71  Identities=25%  Similarity=0.364  Sum_probs=67.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-ccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+..+|+.+.+++++++||.+||++|+...   +++|+|+|+|+.|+|+ .+|++|||.++++||++++.+
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~   79 (95)
T 1wia_A            8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence            7899999999999999999999999999999998   8899999999999999 999999999999999988753

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=1.7e-15  Score=102.99  Aligned_cols=75  Identities=27%  Similarity=0.407  Sum_probs=69.3

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..|.|+|+..+|+.+.+++++++||.+||++|++..   +++|+|+|+|+.|+|+ .+|++|||++|++|+++.+..+.
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~   81 (95)
T 1wia_A            6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA   81 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence            458899998899999999999999999999999997   8999999999999998 99999999999999999886543

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=3.6e-16  Score=104.51  Aligned_cols=69  Identities=23%  Similarity=0.303  Sum_probs=63.6

Q ss_pred             CEEEEEccCCcEE--EE-EecCCCcHHHHHHHhhhh-hCCCCCceEEEec--cccccCCccccccccccccceee
Q 026940            1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~~~--~~-~v~~~~tv~~lK~~i~~~-~gi~~~~q~l~~~--g~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      |.|+|+++.|+.+  ++ +++|++||.+||++|++. .|+||++|+|.|.  |+.|+|+.+|++|||.++++|++
T Consensus        11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            7899999988775  58 999999999999999994 8999999999976  89999999999999999999776

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=7.4e-16  Score=104.80  Aligned_cols=71  Identities=18%  Similarity=0.342  Sum_probs=65.5

Q ss_pred             ceeEEEEeccCcee-EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          152 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       152 ~~~i~v~~~~~~~~-~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .|.|+|+ ..|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..
T Consensus         7 ~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~   78 (96)
T 1wgg_A            7 GYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             EEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             EEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence            3678888 478899 6999999999999999999999999999999999999999 999999999999998754

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.62  E-value=1.7e-15  Score=106.56  Aligned_cols=78  Identities=29%  Similarity=0.584  Sum_probs=70.6

Q ss_pred             CceeeEEEec----------cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceE
Q 026940           75 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH  144 (230)
Q Consensus        75 ~~~~v~v~~~----------~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~  144 (230)
                      ..+.|.|+.+          +|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~  103 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH  103 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred             CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence            4556666654          478899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecc
Q 026940          145 LVLRLRGG  152 (230)
Q Consensus       145 l~~~~~~~  152 (230)
                      +++++.+|
T Consensus       104 lv~rl~GG  111 (115)
T 1we7_A          104 LALKERSG  111 (115)
T ss_dssp             EEECCCSC
T ss_pred             EEEEcCCC
Confidence            99988776

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.61  E-value=1.9e-15  Score=105.01  Aligned_cols=77  Identities=27%  Similarity=0.390  Sum_probs=69.6

Q ss_pred             cceeEEEEeccC---ceeEEEeec---------cccHHHHHHHhcccc--CCCCCc-eEEEEcCeecCCCCcccccCCCC
Q 026940          151 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK  215 (230)
Q Consensus       151 ~~~~i~v~~~~~---~~~~i~v~~---------~~tV~~lK~~i~~~~--~~~~~~-q~L~~~g~~L~d~~tL~~~~i~~  215 (230)
                      ..|.|+|+..++   +.+.+++++         ++||.+||++|++.+  |+|+++ |+|+|+|+.|+|+.+|++|||++
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~   90 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP   90 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred             CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence            347899998888   789999554         599999999999999  999999 99999999999999999999999


Q ss_pred             CCEEEEEEEecC
Q 026940          216 ESTLHLVLRLRG  227 (230)
Q Consensus       216 ~~~i~l~~~~~g  227 (230)
                      |++|+++.+...
T Consensus        91 g~~i~lv~~~~~  102 (107)
T 1x1m_A           91 GSTVHVLRKSWS  102 (107)
T ss_dssp             TCEEEEEESSCC
T ss_pred             CCEEEEEeCCCC
Confidence            999999988653

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.4e-15  Score=104.85  Aligned_cols=77  Identities=16%  Similarity=0.266  Sum_probs=69.2

Q ss_pred             EEEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCcee
Q 026940            2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ   78 (230)
Q Consensus         2 ~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~   78 (230)
                      .|.|+ ..+|..++++++++.||.+||+++...+++|+++|+|.|+|+.|.|+.||++||+++|.++||+.+..+.-.
T Consensus        17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~   94 (118)
T 2daf_A           17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL   94 (118)
T ss_dssp             EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred             EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence            35555 556889999999999999999999999999999999999999999999999999999999999988754433

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.61  E-value=3e-15  Score=101.10  Aligned_cols=80  Identities=16%  Similarity=0.350  Sum_probs=75.7

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      ..|.|.|+..+|+.+.+.|.+++++..|+++++++.|+|+++++|+|+|+.|.++.|+++|++++|++|+++.+++||++
T Consensus         6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~   85 (94)
T 2io1_B            6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP   85 (94)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred             CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence            34788889889999999999999999999999999999999999999999999999999999999999999999999953

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.61  E-value=1.6e-15  Score=100.76  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=62.5

Q ss_pred             EEEEEcc--CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-------ccccccCCccccccccccccceeeeee
Q 026940            2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         2 ~v~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-------~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      +|.|.+.  ..+.+...+++++||.+||++|+..+|+||++|+|.|       .|+.++|+.+|++|||.+|++||++..
T Consensus         4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A            4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            4555433  4567899999999999999999999999999999996       478899999999999999999999864

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.60  E-value=2e-15  Score=102.18  Aligned_cols=69  Identities=14%  Similarity=0.170  Sum_probs=61.5

Q ss_pred             EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec--cc---c-ccCCccccccccccccceeee
Q 026940            2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---Q-LEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g~---~-l~d~~tl~~~~i~~~~~i~l~   70 (230)
                      .|+|++.++  +.+++++++++||++||++|+..+|+||++|+|+|.  |+   . ++|+.+|++|||.+|++|+++
T Consensus        17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv   93 (95)
T 2kjr_A           17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV   93 (95)
T ss_dssp             EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred             EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence            577887665  489999999999999999999999999999999997  34   3 488999999999999999986

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.60  E-value=2.1e-15  Score=100.18  Aligned_cols=64  Identities=19%  Similarity=0.301  Sum_probs=58.4

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE-------cCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~-------~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..+.++..+++++||++||++|+.++|+|+++|+|+|       .|+.|+|+++|++|||++|++|||+-+
T Consensus        13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A           13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            3456789999999999999999999999999999996       478899999999999999999999854

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.59  E-value=3.2e-15  Score=101.18  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=61.9

Q ss_pred             ceeEEEEeccC--ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEc--Ce---ec-CCCCcccccCCCCCCEEEEE
Q 026940          152 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       152 ~~~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~--g~---~L-~d~~tL~~~~i~~~~~i~l~  222 (230)
                      .++|+|+..++  +.+++++++++||++||++|+.++|+|+++|||+|.  |+   .| +|+++|++|||++|++|+++
T Consensus        15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv   93 (95)
T 2kjr_A           15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV   93 (95)
T ss_dssp             EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred             eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence            35667776555  478999999999999999999999999999999987  44   34 89999999999999999986

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.5e-15  Score=103.34  Aligned_cols=73  Identities=18%  Similarity=0.265  Sum_probs=65.3

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE-cCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~-~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      +|.++++.++|+++++++++++||++||++|++++|+||++|+|++ .+..|+|+.+|++|+|++|++|+++++
T Consensus         8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~   81 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTP   81 (100)
T ss_dssp             CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCS
T ss_pred             ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEec
Confidence            3556666789999999999999999999999999999999999985 444499999999999999999999876

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.58  E-value=1.3e-16  Score=120.20  Aligned_cols=70  Identities=29%  Similarity=0.390  Sum_probs=0.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|++++++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|+     ++++|||++++.+
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrG   70 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLG   70 (189)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCC
Confidence            899999999999999999999999999999999999999999999999999999998     8899999988743

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.58  E-value=6.2e-15  Score=99.63  Aligned_cols=75  Identities=24%  Similarity=0.449  Sum_probs=67.1

Q ss_pred             cceeEEEEeccCceeEEEeecc-----ccHHHHHHHhccccCCCCCceEEEEcCeecCC-CCcccccCCCCCCEEEEEEE
Q 026940          151 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~-----~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d-~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..|.|+|+. .++.+.++++++     +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|||++|++|+|+.+
T Consensus         6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            347788886 578899999985     99999999999999999999999999999987 66999999999999999876


Q ss_pred             ec
Q 026940          225 LR  226 (230)
Q Consensus       225 ~~  226 (230)
                      ..
T Consensus        85 ~~   86 (92)
T 1wxv_A           85 KN   86 (92)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.58  E-value=1.4e-15  Score=103.25  Aligned_cols=73  Identities=21%  Similarity=0.326  Sum_probs=65.4

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      .|.|+|+ .+++++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+| .+|++|+|++|++|+|+....
T Consensus        17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~~   89 (95)
T 1v86_A           17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGSTI   89 (95)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSSC
T ss_pred             eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEeccc
Confidence            3677777 568899999999999999999999999999999999999999955 599999999999999876543

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=4e-15  Score=99.39  Aligned_cols=70  Identities=23%  Similarity=0.294  Sum_probs=63.2

Q ss_pred             ceeEEEEeccCcee--EE-EeeccccHHHHHHHhcc-ccCCCCCceEEEEc--CeecCCCCcccccCCCCCCEEEE
Q 026940          152 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       152 ~~~i~v~~~~~~~~--~i-~v~~~~tV~~lK~~i~~-~~~~~~~~q~L~~~--g~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      .|.|+|++..|+.+  .+ ++++++||.+||++|++ +.|+|+++|+|+|.  |+.|+|+.+|++|||++|++|++
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            37899999988775  58 89999999999999999 57999999999966  89999999999999999999875

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.57  E-value=4.7e-15  Score=120.16  Aligned_cols=73  Identities=96%  Similarity=1.295  Sum_probs=69.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+.++|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++
T Consensus       234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL  306 (307)
T 3ai5_A          234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  306 (307)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998764

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.56  E-value=2.2e-14  Score=96.08  Aligned_cols=80  Identities=16%  Similarity=0.387  Sum_probs=75.5

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      ..+.|.|+..+|+.+.+.|.+++++..|+++++++.|+++++++|+|+|+.|.++.|+++|++.+|++|.++..++||+.
T Consensus         4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~~   83 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY   83 (91)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCCC
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCcc
Confidence            34778888889999999999999999999999999999999999999999999999999999999999999999999963

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.56  E-value=7.3e-15  Score=99.65  Aligned_cols=70  Identities=16%  Similarity=0.203  Sum_probs=61.6

Q ss_pred             EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc---c----ccCCccccccccccccceeeee
Q 026940            2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~---~----l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      .++|++...  ..+++++++++||++||++|+..+|+||++|+|+|.|+   .    ++|+++|++|+|.+|++|+++-
T Consensus        16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd   94 (97)
T 2kj6_A           16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID   94 (97)
T ss_dssp             EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred             EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence            567776544  47899999999999999999999999999999999873   2    4889999999999999999874

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.55  E-value=1.2e-14  Score=117.83  Aligned_cols=78  Identities=92%  Similarity=1.273  Sum_probs=71.9

Q ss_pred             eecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       149 ~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      ..+.|.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+++|++|||++|++|+|++|+|
T Consensus       230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            356799999999999999999999999999999999999999999999999999999999999999999999999875

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.55  E-value=7.9e-15  Score=101.74  Aligned_cols=72  Identities=21%  Similarity=0.252  Sum_probs=65.8

Q ss_pred             CEEEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceEEEeccc-----------c----ccCCccccccccccc
Q 026940            1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE   64 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~-----------~----l~d~~tl~~~~i~~~   64 (230)
                      |.|+|++.+|.. .++++ +++||.+||++|+..+|+|+++|+|++.|+           .    ++|+.+|++|||.+|
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G   86 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   86 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence            789999999866 79999 999999999999999999999999998887           4    578899999999999


Q ss_pred             cceeeeeee
Q 026940           65 STLHLVLRL   73 (230)
Q Consensus        65 ~~i~l~~~~   73 (230)
                      ++||+....
T Consensus        87 ~~L~l~~~~   95 (107)
T 1wf9_A           87 SMVYLAYEG   95 (107)
T ss_dssp             CEEECCCSS
T ss_pred             CEEEEEeCC
Confidence            999998654

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.55  E-value=1e-14  Score=98.97  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             eeEEEEeccC--ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 026940          153 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      +++.|.....  ..+++++++++||++||++|+.++|+|+++|+|+|.|   +.    ++|+++|++|+|++|++|+++-
T Consensus        15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd   94 (97)
T 2kj6_A           15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID   94 (97)
T ss_dssp             EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence            4566665443  4789999999999999999999999999999999987   33    4899999999999999998864

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.55  E-value=4.3e-16  Score=117.28  Aligned_cols=72  Identities=29%  Similarity=0.412  Sum_probs=0.5

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      |.|+|++.+|++++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|+     ++++|+|++|++||.
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~   72 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK   72 (189)
T ss_dssp             ----------------------------------------------------------------------------C
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence            578999999999999999999999999999999999999999999999999999998     999999999999985

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.53  E-value=2.1e-14  Score=101.98  Aligned_cols=72  Identities=14%  Similarity=0.248  Sum_probs=62.7

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc---c---c-ccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~---~-l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |.|+|++.++. .+++++++++||++||++|+..+|+||++|+|+|.|   +   . ++|+.+|++|||.+|++||+...
T Consensus         7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~   86 (122)
T 1t0y_A            7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   86 (122)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence            35778776543 689999999999999999999999999999999987   3   2 47889999999999999999863

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.51  E-value=2e-14  Score=119.71  Aligned_cols=79  Identities=30%  Similarity=0.568  Sum_probs=73.0

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhcc---ccCCCCCceEEEEcCeecCCCCcccccCCCCCCEE-EEEEEec
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR  226 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~---~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i-~l~~~~~  226 (230)
                      ..|.|+|+..+|+++.++|++++||.+||++|+.   +.|+|+++|+|+|+|+.|+|+++|.+|||++|++| +++.|.+
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~   85 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK   85 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence            3588999999999999999999999999999999   67799999999999999999999999999999998 7888887


Q ss_pred             CCC
Q 026940          227 GGD  229 (230)
Q Consensus       227 gg~  229 (230)
                      +|.
T Consensus        86 ~~~   88 (368)
T 1oqy_A           86 AGQ   88 (368)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            763

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=2.7e-14  Score=96.99  Aligned_cols=70  Identities=20%  Similarity=0.275  Sum_probs=61.7

Q ss_pred             EEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc---cc----ccCCccccccccccccceeeee
Q 026940            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~~----l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      .|+|+..+.. .+++++++++||++||++|+..+|+||++|+|+|.|   +.    ++|+.+|++|||.++++||+..
T Consensus         9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            5777776543 689999999999999999999999999999999986   33    5889999999999999999875

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.50  E-value=8.6e-14  Score=93.81  Aligned_cols=78  Identities=17%  Similarity=0.387  Sum_probs=71.2

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..+.|.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+.+|++.+|++|+++.+++||
T Consensus        16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence            346788888889999999999999999999999999999999999999999999999999999999999999999998

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.50  E-value=5.2e-14  Score=95.55  Aligned_cols=71  Identities=20%  Similarity=0.279  Sum_probs=61.1

Q ss_pred             eeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 026940          153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      +.+.|+..... .+++++++++||++||++|+.++|+|+++|+|+|.|   +.    ++|+++|++|||++|++|+++-
T Consensus         8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            56666655443 688999999999999999999999999999999976   43    5899999999999999998764

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.50  E-value=2.7e-14  Score=118.93  Aligned_cols=74  Identities=31%  Similarity=0.566  Sum_probs=68.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh---hhCCCCCceEEEeccccccCCccccccccccccce-eeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~---~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i-~l~~~~~   74 (230)
                      |+|+||+.+|+.|.++|++++||.+||.+|+.   +.|+|+++|+|+|.|+.|+|+++|++|+|.++++| +++.++.
T Consensus         8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~   85 (368)
T 1oqy_A            8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK   85 (368)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred             EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence            78999999999999999999999999999999   67899999999999999999999999999999998 6665553

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.48  E-value=1.4e-13  Score=97.67  Aligned_cols=73  Identities=14%  Similarity=0.229  Sum_probs=62.7

Q ss_pred             ceeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC---e---e-cCCCCcccccCCCCCCEEEEEE
Q 026940          152 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       152 ~~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g---~---~-L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      .+.|.|+..++. .+++++++++||++||++|+..+|+|+++|+|+|.|   +   . ++|+++|++|||++|++|+++-
T Consensus         6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd   85 (122)
T 1t0y_A            6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD   85 (122)
T ss_dssp             EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence            356777765443 688999999999999999999999999999999977   3   2 4899999999999999999886


Q ss_pred             E
Q 026940          224 R  224 (230)
Q Consensus       224 ~  224 (230)
                      .
T Consensus        86 ~   86 (122)
T 1t0y_A           86 V   86 (122)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.46  E-value=1.1e-13  Score=94.89  Aligned_cols=79  Identities=15%  Similarity=0.353  Sum_probs=74.7

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..+.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|.|+.|.++.|+.+|++.+|++|+++.+++||+
T Consensus        23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~  101 (104)
T 1wz0_A           23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP  101 (104)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred             CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            3467888888899999999999999999999999999999999999999999999999999999999999999999996

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.46  E-value=6.4e-14  Score=93.34  Aligned_cols=71  Identities=24%  Similarity=0.352  Sum_probs=63.3

Q ss_pred             CEEEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEec--ccccc---CCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g~~l~---d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|++.+|+. .++ +++++||.+||++|++.+|+|+++|+|.++  ++.++   ++.+|++|||.+|++|++...
T Consensus         1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            899999999865 477 999999999999999999999999999986  46764   678999999999999998754

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.45  E-value=3.3e-13  Score=92.57  Aligned_cols=77  Identities=13%  Similarity=0.320  Sum_probs=70.5

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..|.|.|+. +|+...+.+.+++++..|+.+++++.|++++.++|+|+|+.|.++.|.++|++.+|++|.++.+++||
T Consensus        30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            347788888 89999999999999999999999999999999999999999999999999999999999999999998

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.45  E-value=2.4e-13  Score=91.73  Aligned_cols=76  Identities=17%  Similarity=0.403  Sum_probs=71.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecCc
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |.|+|+..+|+.+.+.|.+++++..|+++++++.|+|+.+|+|+|+|+.|.++.|+++|++.++++|+++++..++
T Consensus         8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG   83 (94)
T 2io1_B            8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   83 (94)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred             EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999876543

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.44  E-value=7.6e-14  Score=96.76  Aligned_cols=71  Identities=21%  Similarity=0.276  Sum_probs=64.7

Q ss_pred             eeEEEEeccCceeEEEee-ccccHHHHHHHhccccCCCCCceEEEEcCe-----------e----cCCCCcccccCCCCC
Q 026940          153 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE  216 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~-----------~----L~d~~tL~~~~i~~~  216 (230)
                      |.|.|++.+|+. .++++ +++||.+||++|++++|+|+++|+|++.|+           .    ++|+++|++|||++|
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G   86 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   86 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence            788999888866 78999 999999999999999999999999998887           3    588999999999999


Q ss_pred             CEEEEEEE
Q 026940          217 STLHLVLR  224 (230)
Q Consensus       217 ~~i~l~~~  224 (230)
                      ++|+|...
T Consensus        87 ~~L~l~~~   94 (107)
T 1wf9_A           87 SMVYLAYE   94 (107)
T ss_dssp             CEEECCCS
T ss_pred             CEEEEEeC
Confidence            99998766

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.40  E-value=3.1e-13  Score=93.41  Aligned_cols=79  Identities=15%  Similarity=0.372  Sum_probs=74.4

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..|.|.|+..+|+.+.+.|.+++++..|+.+++++.|+++++++|+|.|+.|.++.|+.+|++.+|++|.++..++||.
T Consensus        25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~  103 (110)
T 2k8h_A           25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL  103 (110)
T ss_dssp             CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence            4477888888999999999999999999999999999999999999999999999999999999999999999999984

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.40  E-value=3.1e-13  Score=110.99  Aligned_cols=74  Identities=22%  Similarity=0.437  Sum_probs=66.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE---eccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |.|.||. +|+.+++++++++||++||++|++.+||||++|+|+   |.|+.|.|+.+|++|||++|++++|...+..
T Consensus         6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~   82 (320)
T 3shq_A            6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA   82 (320)
T ss_dssp             EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence            4688885 799999999999999999999999999999999999   8999999999999999999999999877654

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.40  E-value=1.5e-12  Score=83.52  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=66.9

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  222 (230)
                      +.|.|+..+|+.+.+.+.+++++..|+++.+++.|+++++++|+|+|+.|.++.|.++|++.+|++|+++
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            5788888899999999999999999999999999999999999999999999999999999999999986

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.38  E-value=1.5e-12  Score=83.62  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=67.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~   70 (230)
                      |.|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|+.|.++.|++++++.+|++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            5789999999999999999999999999999999999999999999999999999999999999999885

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=1.8e-12  Score=86.74  Aligned_cols=75  Identities=16%  Similarity=0.379  Sum_probs=71.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |.|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+.+++|+|+|+.|.++.|++++++.++++|+++....+
T Consensus         6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g   80 (91)
T 2io0_B            6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG   80 (91)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            578899999999999999999999999999999999999999999999999999999999999999999987643

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.37  E-value=5.3e-13  Score=88.84  Aligned_cols=71  Identities=24%  Similarity=0.352  Sum_probs=61.7

Q ss_pred             eeEEEEeccCceeEEE-eeccccHHHHHHHhccccCCCCCceEEEEc--CeecC---CCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~--g~~L~---d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      |.|.|+..+|+. .++ +++++||.+||+.|++++|+|+++|+|+|+  ++.++   |+++|++|||.+|++|++.-.
T Consensus         1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            568899888865 477 999999999999999999999999999975  47774   688999999999999987644

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.37  E-value=6.9e-13  Score=108.88  Aligned_cols=72  Identities=22%  Similarity=0.460  Sum_probs=64.9

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE---EcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~---~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .++|+|+ .+|+++++++++++||++||++|++.+|+|+++|+|+   |+|+.|+|+.+|++|||++|++|+|+-.
T Consensus         5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs   79 (320)
T 3shq_A            5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS   79 (320)
T ss_dssp             EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred             eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence            3677888 5899999999999999999999999999999999999   8999999999999999999999998744

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.33  E-value=5e-12  Score=85.13  Aligned_cols=74  Identities=15%  Similarity=0.354  Sum_probs=69.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |.|.|+..+|+.+.+.|.+++++..|+.+++++.|+++++++|+|+|+.|.++.|++++++.++++|++++...
T Consensus        18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~   91 (93)
T 2d07_B           18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   91 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred             EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence            56889988999999999999999999999999999999999999999999999999999999999999988754

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.32  E-value=7.1e-12  Score=81.80  Aligned_cols=72  Identities=10%  Similarity=0.258  Sum_probs=67.3

Q ss_pred             cceeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940          151 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       151 ~~~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  222 (230)
                      ..+.|.|+..+|+ .+.+.+.+++++..|+.+++++.|+++++++|+|.|..|.++.|.++|++.+|++|+++
T Consensus         6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            3477888888896 89999999999999999999999999999999999999999999999999999999885

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.30  E-value=7.3e-12  Score=85.79  Aligned_cols=74  Identities=15%  Similarity=0.354  Sum_probs=70.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |.|.|+..+|+.+.+.|.+++++..|+.+++++.|+++.+++|+|+|+.|.++.|++++++.++++|++++...
T Consensus        25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~   98 (104)
T 1wz0_A           25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   98 (104)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999988764

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.30  E-value=8.5e-12  Score=81.44  Aligned_cols=70  Identities=10%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~   70 (230)
                      |.|.|+..+|+ .+.+.|.+++++..|+.+.+++.|+++++++|+|+|+.|.++.|++++++.+|++|++.
T Consensus         8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            57899999996 89999999999999999999999999999999999999999999999999999999875

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.29  E-value=7.4e-12  Score=86.48  Aligned_cols=80  Identities=15%  Similarity=0.395  Sum_probs=74.9

Q ss_pred             cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecce
Q 026940           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ...|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|.|+.|.++.|+++|++.+|++|+++....+|.
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~  103 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL  103 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999888775

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.26  E-value=1.1e-11  Score=85.03  Aligned_cols=78  Identities=13%  Similarity=0.317  Sum_probs=71.1

Q ss_pred             cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      ...|.|.|+. +|+.+.+.+..++++..|+.+++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++.++..+|
T Consensus        29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            3458899999 99999999999999999999999999999999999999999999999999999999999999877653

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.26  E-value=3.6e-11  Score=81.72  Aligned_cols=72  Identities=17%  Similarity=0.248  Sum_probs=60.4

Q ss_pred             eeEEEEe---ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC-------eec-CCCCcccccCCCCCCEEEE
Q 026940          153 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~---~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g-------~~L-~d~~tL~~~~i~~~~~i~l  221 (230)
                      +++.|+.   .+++.+...+++++||++||.+|+..+|+|+..|+|.|.+       ..| +|..+|.+||+.+|++|++
T Consensus        10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V   89 (97)
T 1wjn_A           10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence            3455543   3577889999999999999999999999999999999763       225 6889999999999999988


Q ss_pred             EEE
Q 026940          222 VLR  224 (230)
Q Consensus       222 ~~~  224 (230)
                      .-.
T Consensus        90 ~d~   92 (97)
T 1wjn_A           90 RWS   92 (97)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            754

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.25  E-value=2.1e-11  Score=82.96  Aligned_cols=71  Identities=17%  Similarity=0.238  Sum_probs=61.0

Q ss_pred             EEEEEc---cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc-------ccc-cCCccccccccccccceeee
Q 026940            2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g-------~~l-~d~~tl~~~~i~~~~~i~l~   70 (230)
                      .|+|++   .+|..+...+++++||++||.+|+..+|+|+..|+|.+.+       ..| +|..+|+.||+.+|++||+.
T Consensus        11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~   90 (97)
T 1wjn_A           11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence            466665   4678999999999999999999999999999999999863       224 56789999999999999987


Q ss_pred             ee
Q 026940           71 LR   72 (230)
Q Consensus        71 ~~   72 (230)
                      ..
T Consensus        91 d~   92 (97)
T 1wjn_A           91 WS   92 (97)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.15  E-value=2.5e-10  Score=78.95  Aligned_cols=77  Identities=17%  Similarity=0.385  Sum_probs=71.0

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      ..+.|.|+..+|....+.+.+++++..|+...+++.|++++.++|.|+|..|.++.|..++++.+|++|.++..+-|
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G  115 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG  115 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            34677788888888999999999999999999999999999999999999999999999999999999999987654

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=99.08  E-value=2.2e-10  Score=85.30  Aligned_cols=78  Identities=12%  Similarity=0.261  Sum_probs=72.4

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..+.|.|. .+|..+.+.|.+++++..|+...+++.|+++..++|.|+|..+.++.|..++++.+||+|.++..+.||.
T Consensus        56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            34667776 4788999999999999999999999999999999999999999999999999999999999999999995

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=99.06  E-value=6.6e-10  Score=84.45  Aligned_cols=78  Identities=13%  Similarity=0.299  Sum_probs=72.1

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..+.|.|+ .+|+...+.+.+++++..|+...+++.|++++++||.|+|+.+.++.|..++++.+|++|.++..+.||.
T Consensus        28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~  105 (200)
T 3pge_A           28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG  105 (200)
T ss_dssp             CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred             CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence            33566776 4788999999999999999999999999999999999999999999999999999999999999999984

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.99  E-value=1.6e-09  Score=74.85  Aligned_cols=75  Identities=16%  Similarity=0.375  Sum_probs=70.0

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  149 (230)
                      ..+.|.|+..+|..+.+.+..++++..|+...+++.|+++..++|+|+|+.|.++.|.+++++.+|++|.+....
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence            457888888889999999999999999999999999999999999999999999999999999999999988654

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.93  E-value=1.3e-10  Score=87.72  Aligned_cols=81  Identities=12%  Similarity=0.260  Sum_probs=1.9

Q ss_pred             eecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       149 ~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +...|.|.| ..+|+...+.+.+++++..|++..+++.|++++.+||.|+|+.+.++.|.+++++.+||+|.++..+.||
T Consensus        18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG   96 (227)
T 3v7o_A           18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   96 (227)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence            344567777 6688899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026940          229 DF  230 (230)
Q Consensus       229 ~~  230 (230)
                      +.
T Consensus        97 ~~   98 (227)
T 3v7o_A           97 LT   98 (227)
T ss_dssp             CC
T ss_pred             ch
Confidence            63

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.89  E-value=1.6e-08  Score=63.66  Aligned_cols=70  Identities=16%  Similarity=0.316  Sum_probs=63.3

Q ss_pred             eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      ++.+++.....+.+.++++++|.+|-+..+.+.|+|++ .++|.|.|..|+.+.++++|++.+|+.|.+++
T Consensus        11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            45556566677899999999999999999999999999 89999999999999999999999999998874

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.6e-08  Score=76.75  Aligned_cols=79  Identities=13%  Similarity=0.287  Sum_probs=72.2

Q ss_pred             ecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      +...+.|.|+ .+|....+.+.+++++..|+...+++.|+++..++++|+|+.+.++.|.+++++.+|++|++.....++
T Consensus        26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg  104 (200)
T 3pge_A           26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  104 (200)
T ss_dssp             CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred             CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence            3456788886 488899999999999999999999999999999999999999999999999999999999999887654

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.80  E-value=4e-09  Score=68.70  Aligned_cols=69  Identities=14%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccc---c--cCCccccccccccccceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~---l--~d~~tl~~~~i~~~~~i~l~   70 (230)
                      |.+.|++.+| .+.+++++++|+.+|+++|.+.++++++.|.+++.-.+   |  .++.+|+++||.+|+.+++.
T Consensus         5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            6788888875 77888999999999999999999999999988865433   3  36789999999999998875

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.79  E-value=6e-09  Score=77.61  Aligned_cols=100  Identities=12%  Similarity=0.286  Sum_probs=72.9

Q ss_pred             Cccccccccccccceeee--eeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCc
Q 026940           53 GRTLADYNIQKESTLHLV--LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR  130 (230)
Q Consensus        53 ~~tl~~~~i~~~~~i~l~--~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~  130 (230)
                      ..+|++-+...+..-..-  ..+...+.|.|. .+|..+.+.|..++++..|+...+++.|+++..++++|+|+.+.++.
T Consensus        32 ~~~~~~~~~~~~~~~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~dd  110 (207)
T 3tix_A           32 TGSLQDSEVNQEAKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQ  110 (207)
T ss_dssp             -----------------------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSC
T ss_pred             cccccccccCCCCCCCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCC
Confidence            344555444443333222  223455788886 48889999999999999999999999999999999999999999999


Q ss_pred             cHhhhccccCCceEEEEEeecce
Q 026940          131 TLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus       131 tL~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      |..++++.+|++|+++....+|.
T Consensus       111 TPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A          111 TPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             CTTTTTCCTTEEEEECCCCCTTG
T ss_pred             CHHHcCCCCCCEEEEEEeccCCC
Confidence            99999999999999999888773

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.71  E-value=8.8e-08  Score=60.35  Aligned_cols=71  Identities=15%  Similarity=0.323  Sum_probs=64.2

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  147 (230)
                      +.+.++......+.+.+.++.+|.+|-...+.+.+||++ ..+|.|.|..|+.+.++++|++.+++.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            445566666777999999999999999999999999999 89999999999999999999999999998764

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.65  E-value=3.1e-09  Score=80.21  Aligned_cols=82  Identities=12%  Similarity=0.312  Sum_probs=1.2

Q ss_pred             eeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940           71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        71 ~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  150 (230)
                      +.+...|.|+| ..+|....+.+.+++++..|+...+++.|++++.++++|+|+.+.++.|.+++++.+|++|+++....
T Consensus        16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~   94 (227)
T 3v7o_A           16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   94 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence            34456688888 67899999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cce
Q 026940          151 GGM  153 (230)
Q Consensus       151 ~~~  153 (230)
                      +|.
T Consensus        95 GG~   97 (227)
T 3v7o_A           95 GGL   97 (227)
T ss_dssp             -CC
T ss_pred             CCc
Confidence            774

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.62  E-value=2e-07  Score=62.57  Aligned_cols=72  Identities=13%  Similarity=0.278  Sum_probs=65.0

Q ss_pred             cceeEEEEeccCc-eeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940          151 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       151 ~~~~i~v~~~~~~-~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  222 (230)
                      ..+.|.|+..++. ...+.+.+++++..|....+++.|++++..+|.|.|..+.++.|..++++.+|++|.++
T Consensus        24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            3466777777774 78999999999999999999999999999999999999999999999999999999875

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.59  E-value=6.3e-08  Score=62.98  Aligned_cols=70  Identities=14%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcc---c--CCCccHhhhccccCCceEEE
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~---L--~d~~tL~~~~i~~~~~i~l~  146 (230)
                      .|.+.++..+| .+.+++++++|+.+|+++|++.++++++.+.+.+....   +  .++.+++++|++.|+.|++.
T Consensus         4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            47788888887 57788999999999999999999999888877754433   3  47789999999999999764

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.57  E-value=2.2e-07  Score=61.66  Aligned_cols=51  Identities=20%  Similarity=0.305  Sum_probs=43.2

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccccc--CCcccccc
Q 026940            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADY   59 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~--d~~tl~~~   59 (230)
                      .+..+.+.+++++||..+|++|++++||||++|+|+|.|+.+.  ++..-..|
T Consensus        22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~   74 (94)
T 4efo_A           22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF   74 (94)
T ss_dssp             TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGS
T ss_pred             cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccC
Confidence            5788999999999999999999999999999999999996654  44333444

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.56  E-value=2.2e-07  Score=71.75  Aligned_cols=81  Identities=12%  Similarity=0.309  Sum_probs=72.9

Q ss_pred             EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      .....+.|.|.. .++...+.+..++++..|+++.+++.|+++++++|.|.|..+.++.|..++.+.++++|.+..++.|
T Consensus        17 ~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G   95 (209)
T 3uf8_A           17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG   95 (209)
T ss_dssp             -CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred             CCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence            344556677775 6778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026940          228 GD  229 (230)
Q Consensus       228 g~  229 (230)
                      |.
T Consensus        96 g~   97 (209)
T 3uf8_A           96 GS   97 (209)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.51  E-value=6.3e-07  Score=60.13  Aligned_cols=73  Identities=12%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             cCceeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940           74 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        74 ~~~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  146 (230)
                      ...+.|.|+..+|. .+.+.+..++++..|....+++.|+++...+++|+|..+.++.|..++++.+|++|.+.
T Consensus        23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            34577888888884 78999999999999999999999999999999999999999999999999999999764

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.50  E-value=7.6e-06  Score=68.63  Aligned_cols=143  Identities=23%  Similarity=0.331  Sum_probs=110.5

Q ss_pred             eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC----CCCCCcEEEe------cCcccCCCccHhhhccccCCceEEEE
Q 026940           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~----i~~~~q~L~~------~g~~L~d~~tL~~~~i~~~~~i~l~~  147 (230)
                      .+.|... +.+-++.++++.||.+....|.++..    .++++.-|++      +|.-|++.++|..|++.+++.+....
T Consensus         5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~   83 (371)
T 3ivf_A            5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK   83 (371)
T ss_dssp             EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred             EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence            3444444 67788999999999999999988874    3577778887      33458888899999999999886654


Q ss_pred             EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEEcC---------eecCCCCcccccCCCCCC
Q 026940          148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKES  217 (230)
Q Consensus       148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~~g---------~~L~d~~tL~~~~i~~~~  217 (230)
                         ..+.+.|..++|....+.+++++|+.++-..|+.+.|+.. +.+-|.+..         .-|+..+++.+.+.....
T Consensus        84 ---~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~  160 (371)
T 3ivf_A           84 ---KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHE  160 (371)
T ss_dssp             ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTC
T ss_pred             ---ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCc
Confidence               3367889999999999999999999999999999999753 445665421         234567788887777777


Q ss_pred             EEEEEEE
Q 026940          218 TLHLVLR  224 (230)
Q Consensus       218 ~i~l~~~  224 (230)
                      ++++..|
T Consensus       161 ~l~frvK  167 (371)
T 3ivf_A          161 TLLLRRK  167 (371)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEE
Confidence            7766555

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.47  E-value=1.9e-08  Score=82.76  Aligned_cols=81  Identities=12%  Similarity=0.295  Sum_probs=0.5

Q ss_pred             EeecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       148 ~~~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      .+...+.|.|+. .|+...+.+.+++++..|+++.+++.|++++.+++.|+|+.+.++.|.+++++++||+|.++..+.|
T Consensus        17 ~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g   95 (360)
T 3ix6_A           17 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG   95 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCc
Confidence            344456777775 5778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 026940          228 GD  229 (230)
Q Consensus       228 g~  229 (230)
                      |.
T Consensus        96 ~~   97 (360)
T 3ix6_A           96 GM   97 (360)
T ss_dssp             -C
T ss_pred             hH
Confidence            94

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=98.45  E-value=5.4e-07  Score=58.94  Aligned_cols=75  Identities=20%  Similarity=0.239  Sum_probs=69.1

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      ++|.+.|-..+++...+.+.+++++.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+++.++..-
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s   82 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS   82 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence            567899999999999999999999999999999999999999999999999999999999999999999998653

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=98.35  E-value=2.4e-06  Score=56.38  Aligned_cols=71  Identities=14%  Similarity=0.290  Sum_probs=65.1

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      +.|.|+ ..|....+.+..++....|....+++.|++++..++.|.|..+.++.|.+++++.+|++|.++.-
T Consensus        22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            566677 46888999999999999999999999999999999999999999999999999999999988753

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=98.29  E-value=3.5e-06  Score=55.10  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=67.9

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  148 (230)
                      .+|.|.|-..+++...+.+.+++++.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+++.++..
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence            46788888899999999999999999999999999999999999999999999999999999999999988754

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=98.29  E-value=4.4e-06  Score=55.12  Aligned_cols=73  Identities=14%  Similarity=0.262  Sum_probs=66.8

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  148 (230)
                      ..+.|.|+. +|....+.+..++....|....+++.|++++..+++|.|..+.++.|.+++++.+|++|.++..
T Consensus        20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            347788874 7888999999999999999999999999999999999999999999999999999999988753

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.29  E-value=2.5e-06  Score=56.58  Aligned_cols=70  Identities=23%  Similarity=0.324  Sum_probs=53.6

Q ss_pred             EEEEecc-CceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeec--CCCCcccccCC-CCCCEEEEEEE
Q 026940          155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI-QKESTLHLVLR  224 (230)
Q Consensus       155 i~v~~~~-~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L--~d~~tL~~~~i-~~~~~i~l~~~  224 (230)
                      |+|-+.+ +..+.+.+.+++|+..+|++|++++|+|+++|+|+|.|+.|  +.+++-..|-- ....-|.++-+
T Consensus        15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~   88 (94)
T 4efo_A           15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL   88 (94)
T ss_dssp             EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred             EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence            4444443 67789999999999999999999999999999999999755  55555556543 45556666554

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.23  E-value=3.3e-05  Score=67.61  Aligned_cols=183  Identities=11%  Similarity=0.209  Sum_probs=129.7

Q ss_pred             EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc-c------c-ccC-----Cccccccccccccceeeeeee------
Q 026940           13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-K------Q-LED-----GRTLADYNIQKESTLHLVLRL------   73 (230)
Q Consensus        13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g-~------~-l~d-----~~tl~~~~i~~~~~i~l~~~~------   73 (230)
                      .++.|...+|+.+||+.|.+.+|+|+++|||+... +      + +.+     ..++.++.- .++.+.+++..      
T Consensus        38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~  116 (530)
T 2ylm_A           38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA  116 (530)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred             ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence            36799999999999999999999999999999531 1      0 111     122333211 23333333321      


Q ss_pred             -----------cCceeeEEEecc--CeeE----eeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC------cccC-CC
Q 026940           74 -----------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLE-DG  129 (230)
Q Consensus        74 -----------~~~~~v~v~~~~--g~~~----~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~-d~  129 (230)
                                 .+.+-|++|..+  .+.+    .+-++.+++|++|-..|.+..|+|++.-..+|.-      ..|+ .+
T Consensus       117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~  196 (530)
T 2ylm_A          117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD  196 (530)
T ss_dssp             TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred             CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence                       113666776554  2333    3568889999999999999999999876655542      3466 57


Q ss_pred             ccHhhh--ccccCCceEEEEEee-c-----------------ceeEEEEe---ccCceeEEEeeccccHHHHHHHhcccc
Q 026940          130 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE  186 (230)
Q Consensus       130 ~tL~~~--~i~~~~~i~l~~~~~-~-----------------~~~i~v~~---~~~~~~~i~v~~~~tV~~lK~~i~~~~  186 (230)
                      .|+.+.  .+.+|+.|-+-.... .                 .+.|..+.   .+...+.++++...|-.++-++|+++.
T Consensus       197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l  276 (530)
T 2ylm_A          197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL  276 (530)
T ss_dssp             SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            899999  999999987665433 1                 13444443   235669999999999999999999999


Q ss_pred             CCCCCceEEE
Q 026940          187 GIPPDQQRLI  196 (230)
Q Consensus       187 ~~~~~~q~L~  196 (230)
                      ++.|...||.
T Consensus       277 ~~dP~~lRf~  286 (530)
T 2ylm_A          277 NTDPMLLQFF  286 (530)
T ss_dssp             TSCGGGEEEE
T ss_pred             CCCchhEEEE
Confidence            9999998886

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.23  E-value=1.4e-07  Score=77.63  Aligned_cols=83  Identities=13%  Similarity=0.317  Sum_probs=0.4

Q ss_pred             eeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940           70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        70 ~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  149 (230)
                      .+.+...+.|.|+. +|+...+.+..++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++.+|++|.+....
T Consensus        15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q   93 (360)
T 3ix6_A           15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence            34455667788876 67888999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ecce
Q 026940          150 RGGM  153 (230)
Q Consensus       150 ~~~~  153 (230)
                      .+||
T Consensus        94 ~g~~   97 (360)
T 3ix6_A           94 IGGM   97 (360)
T ss_dssp             ---C
T ss_pred             CchH
Confidence            7664

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.23  E-value=5e-05  Score=63.61  Aligned_cols=134  Identities=24%  Similarity=0.358  Sum_probs=102.6

Q ss_pred             CcEEEEEecCCCcHHHHHHHhhhhhC----CCCCceEEEec------cccccCCccccccccccccceeeeeeecCceee
Q 026940           10 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI   79 (230)
Q Consensus        10 g~~~~~~v~~~~tv~~lK~~i~~~~g----i~~~~q~l~~~------g~~l~d~~tl~~~~i~~~~~i~l~~~~~~~~~v   79 (230)
                      +-+-++.++|+.||.|+...|.++..    .++++--|++.      |.=|.+.++|..|++.++..+.....+   +.+
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~   88 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL   88 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence            67889999999999999999988774    35666678873      233788889999999999988876544   788


Q ss_pred             EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEecC---------cccCCCccHhhhccccCCceEEE
Q 026940           80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g---------~~L~d~~tL~~~~i~~~~~i~l~  146 (230)
                      .|..++|....+.++..+|+.++-..|+++.|+... ..-|.+..         .-|+.++++.+.+.....++++.
T Consensus        89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr  165 (371)
T 3ivf_A           89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR  165 (371)
T ss_dssp             EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence            899999999999999999999999999999997643 34555421         23455666776665444444443

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=98.20  E-value=1.9e-07  Score=78.96  Aligned_cols=77  Identities=12%  Similarity=0.328  Sum_probs=0.0

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      .+.|.|+. .+....+.+..++++..|++..+++.|+++++++|.|+|+.+.++.|..++++.+|++|.++..+.||.
T Consensus        30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~  106 (389)
T 4da1_A           30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE  106 (389)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence            35566665 667888999999999999999999999999999999999999999999999999999999999999984

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.19  E-value=2.4e-06  Score=65.82  Aligned_cols=82  Identities=12%  Similarity=0.303  Sum_probs=71.5

Q ss_pred             eeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940           70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        70 ~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  149 (230)
                      .+.+...+.|.|.. +|+.+.+.+..++++..|+...+++.|++++.++++|.|+.+.++.|..+..+.+++.|.+....
T Consensus        15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq   93 (209)
T 3uf8_A           15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (209)
T ss_dssp             ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred             eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence            34445667888876 77788999999999999999999999999999999999999999999999999999999998766


Q ss_pred             ecc
Q 026940          150 RGG  152 (230)
Q Consensus       150 ~~~  152 (230)
                      .++
T Consensus        94 ~Gg   96 (209)
T 3uf8_A           94 IGG   96 (209)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            554

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=98.14  E-value=3.6e-06  Score=59.11  Aligned_cols=71  Identities=27%  Similarity=0.394  Sum_probs=58.1

Q ss_pred             eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-c------------------------------------eEEE
Q 026940          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-Q------------------------------------QRLI  196 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~------------------------------------q~L~  196 (230)
                      .+.|+.++|...++.|+.+.||.+++..|+.+.|++.. .                                    ++|.
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            58899999999999999999999999999999998643 2                                    2221


Q ss_pred             E--cCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          197 F--AGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       197 ~--~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .  .+.-|++++||.++||.++++|.|..|
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence            1  124568899999999999999877665

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=98.04  E-value=7.2e-06  Score=57.57  Aligned_cols=69  Identities=28%  Similarity=0.393  Sum_probs=56.9

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-------------------------------------ceEEEe
Q 026940            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF   45 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-------------------------------------~q~l~~   45 (230)
                      +.|+.++|...++.|+.+.||.+++..|+.+.||++.                                     +|+|-.
T Consensus        14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~   93 (128)
T 2kc2_A           14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT   93 (128)
T ss_dssp             EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred             EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence            7899999999999999999999999999999999965                                     333322


Q ss_pred             --ccccccCCccccccccccccceeeee
Q 026940           46 --AGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus        46 --~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                        ...-|++..||.++||.+++++.|.-
T Consensus        94 dd~~~WLD~srtL~EQGI~e~~tllLRr  121 (128)
T 2kc2_A           94 DDELNWLDHGRTLREQGVEEHETLLLRR  121 (128)
T ss_dssp             SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred             cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence              11346778999999999999977654

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=98.03  E-value=1.8e-05  Score=51.03  Aligned_cols=68  Identities=15%  Similarity=0.226  Sum_probs=55.0

Q ss_pred             eEEEEe--ccCceeEEEeeccccHHHHHHHhccccCCCC--C---ceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026940          154 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--D---QQRLIFAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       154 ~i~v~~--~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~--~---~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      .|++..  ..++.+.+.++...||.+|++.+.+-++++.  .   ..+..-++..|.++.+|++|+|.+||.|.+
T Consensus         6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            344443  4689999999999999999999999988643  2   234446788999999999999999999865

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.87  E-value=8.8e-05  Score=48.41  Aligned_cols=70  Identities=19%  Similarity=0.360  Sum_probs=59.7

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L---~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      ..|.++..+|+.+.-.++.++||.+|..-|.. .+.++..+.|.  |..+.+   +.++||.+.|+.++++|.+--
T Consensus         8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            46788888999999999999999999999987 56778888888  667877   457899999999999998754

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.85  E-value=2.1e-06  Score=72.49  Aligned_cols=82  Identities=11%  Similarity=0.320  Sum_probs=0.0

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeeccee
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ  154 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~  154 (230)
                      ..+.|+|.. ++....+.+..++++..|+...+++.|+++..++++|+|+.+.++.|..++++.+|++|.+.....++..
T Consensus        29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n  107 (389)
T 4da1_A           29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN  107 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence            346667765 6778889999999999999999999999999999999999999999999999999999999988776654


Q ss_pred             EEE
Q 026940          155 IFV  157 (230)
Q Consensus       155 i~v  157 (230)
                      ...
T Consensus       108 ~~~  110 (389)
T 4da1_A          108 LYF  110 (389)
T ss_dssp             ---
T ss_pred             cce
Confidence            443

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=97.82  E-value=0.0036  Score=54.72  Aligned_cols=210  Identities=10%  Similarity=0.118  Sum_probs=143.5

Q ss_pred             EEEEEccCC--cEE----EEEecCCCcHHHHHHHhhhhhCCCCCceEEEec------ccccc-CCcccccc--ccccccc
Q 026940            2 QIFVKTLTG--KTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKEST   66 (230)
Q Consensus         2 ~v~v~~~~g--~~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~------g~~l~-d~~tl~~~--~i~~~~~   66 (230)
                      -||+|..+-  .++    .+.++..++|.+|-..|.+..|+|+.....+|.      ...|+ .+.|+.+.  .+.+|+.
T Consensus       132 LlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdI  211 (530)
T 2ylm_A          132 MLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDI  211 (530)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEE
T ss_pred             EEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCE
Confidence            467776642  232    257899999999999999999999987776665      35577 57899999  9999999


Q ss_pred             eeeeeeec------------------CceeeEEEe---ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ec--
Q 026940           67 LHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FA--  122 (230)
Q Consensus        67 i~l~~~~~------------------~~~~v~v~~---~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~--  122 (230)
                      |.+-....                  ..+.|.++.   .+...|.++++...|-.++-++|+++.++.|...++. .+  
T Consensus       212 I~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~  291 (530)
T 2ylm_A          212 IVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGY  291 (530)
T ss_dssp             EEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTT
T ss_pred             EEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccc
Confidence            87765432                  125555553   3356699999999999999999999999999998876 21  


Q ss_pred             -Cc---c--cCCCccHhhhccccC----CceEEEE-Ee-------ecceeEEEEeccC--ceeEEEeeccccHHHHHHHh
Q 026940          123 -GK---Q--LEDGRTLADYNIQKE----STLHLVL-RL-------RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKI  182 (230)
Q Consensus       123 -g~---~--L~d~~tL~~~~i~~~----~~i~l~~-~~-------~~~~~i~v~~~~~--~~~~i~v~~~~tV~~lK~~i  182 (230)
                       +.   .  ...+.+|.+.=....    +.++..+ ..       ...+.|+....+.  ..+.+-++.+.||.+|-+.+
T Consensus       292 ~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l  371 (530)
T 2ylm_A          292 RDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEEC  371 (530)
T ss_dssp             SCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHH
T ss_pred             cCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHH
Confidence             21   2  233456665432211    1122111 11       1234554443332  25667788899999999999


Q ss_pred             ccccCCC---CCceEEE--EcCe---ecCCCCccccc
Q 026940          183 QDKEGIP---PDQQRLI--FAGK---QLEDGRTLADY  211 (230)
Q Consensus       183 ~~~~~~~---~~~q~L~--~~g~---~L~d~~tL~~~  211 (230)
                      .++.+++   ....|+.  ++++   .++++.++...
T Consensus       372 ~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i  408 (530)
T 2ylm_A          372 KKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL  408 (530)
T ss_dssp             HTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred             HHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence            9999886   4567775  7774   55666667544

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.73  E-value=8e-05  Score=47.96  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=55.3

Q ss_pred             EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC----ce-EEEeccccccCCccccccccccccceee
Q 026940            2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD----QQ-RLIFAGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~----~q-~l~~~g~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      .|++..  ..|+.+.++++...||.+|++.+.+.++++..    .| +..-.+..|.++..|++|++.+|+.+.+
T Consensus         6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            456654  57899999999999999999999999998763    21 2223467789999999999999998764

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.59  E-value=0.00052  Score=44.69  Aligned_cols=68  Identities=19%  Similarity=0.369  Sum_probs=57.1

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--ecccccc---CCccccccccccccceeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~---d~~tl~~~~i~~~~~i~l~   70 (230)
                      +|-|+..+|..+.-.+..++||.+|...|.. .+.++....|.  |-.+.+.   .+.||.+.|+.+.+++.+-
T Consensus         9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            5788999999999999999999999999998 67777777777  3356673   4689999999998887764

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.40  E-value=0.00076  Score=46.17  Aligned_cols=72  Identities=15%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..|.++..+|..+.-.++.++||.++..-|....+.+...+.|+  |..+.+.   .++||.+.|+.+.++|.+...
T Consensus        14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            56788888999999999999999999999998877777778887  6777775   378999999999988877654

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=97.37  E-value=0.00087  Score=46.98  Aligned_cols=92  Identities=16%  Similarity=0.225  Sum_probs=68.0

Q ss_pred             ccccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--ecCccc--CC-
Q 026940           54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-  128 (230)
Q Consensus        54 ~tl~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L--~d-  128 (230)
                      .....+..+.+..-.-.....+...|.|+.++|..+.-.+..++||.+|..-|... +.++....|+  |-.+.+  .| 
T Consensus        21 ~~~~~~~~~~~~~~~~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~   99 (124)
T 1wj4_A           21 EILEMPPEKADGVVEGIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDY   99 (124)
T ss_dssp             CSCSCCCCCCCCCCCCCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCS
T ss_pred             hhhhcCCCCCCCcccccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCC
Confidence            34444444433322222233456889999999999999999999999999999887 7777788887  567777  33 


Q ss_pred             CccHhhhccccCCceEEE
Q 026940          129 GRTLADYNIQKESTLHLV  146 (230)
Q Consensus       129 ~~tL~~~~i~~~~~i~l~  146 (230)
                      +.+|.+.|+.+.+.+.+.
T Consensus       100 ~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A          100 DITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             SSCTTTTTCCSSBCCEEE
T ss_pred             CCCHHHCCCCCceEEEEE
Confidence            789999999998888665

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=97.32  E-value=0.00064  Score=47.66  Aligned_cols=71  Identities=18%  Similarity=0.326  Sum_probs=60.2

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L---~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      ...|.|+..+|..+.-.+..++||.+|..-|... +.++..+.|+  |..+.+   +.++||.+.|+.+...|.+..
T Consensus        43 ~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~  118 (124)
T 1wj4_A           43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence            3578888889999999999999999999999887 7777888887  678888   347899999999988887654

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.16  E-value=0.0026  Score=43.48  Aligned_cols=70  Identities=16%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--ecccccc---CCccccccccccccceeeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~---d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +|-|+..+|..+.-.+..++||.+|.+.|....+.+.....|.  |-.+.+.   .+.||.+.|+.+.+.+.+..
T Consensus        15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~   89 (109)
T 2dzk_A           15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP   89 (109)
T ss_dssp             EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence            5788999999999999999999999999999988776666666  3456665   36899999999887777654

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.90  E-value=0.0044  Score=42.33  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=58.4

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeecC--CCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L~--d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..|.++..+|+.+.-.+..++||.+|..-|... +..+..+.|+  |..+.+.  .++||.+.|+.+..+|.+..+
T Consensus        24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~   98 (109)
T 2cr5_A           24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   98 (109)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence            567788889999899999999999999999865 5566778887  6777775  478999999999999877543

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.86  E-value=0.0023  Score=40.88  Aligned_cols=63  Identities=13%  Similarity=0.244  Sum_probs=55.3

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE---cCeecCCCCcccccCCCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK  215 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~---~g~~L~d~~tL~~~~i~~  215 (230)
                      +.+.|+....+..-+.|++..+..+|--.|+++..+.|+...|..   .+..|+-+++|.+|||++
T Consensus        11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            556677777888899999999999999999999999999998874   447889899999999987

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=96.85  E-value=0.0029  Score=48.77  Aligned_cols=67  Identities=22%  Similarity=0.419  Sum_probs=54.7

Q ss_pred             eeEEEeeccccHHHHHHHhccccCCCCC-ceEEE--E-cC--eecCC-CCcccccCCCCCCEEEEEEEecCCCC
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~--~-~g--~~L~d-~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      .+.+.++..+||.+|++.+++.++++++ ..||-  + .+  ..|+| ++||.++++.++..|.+-.|..+|.|
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~W  214 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTW  214 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence            3567788999999999999999999987 57775  2 22  45655 67999999999999999999988864

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=96.81  E-value=0.0045  Score=48.20  Aligned_cols=66  Identities=20%  Similarity=0.320  Sum_probs=55.4

Q ss_pred             eEEEeeccccHHHHHHHhccccCCCCC-ceEEE-EcC----eecCC-CCcccccCCCCCCEEEEEEEecCCCC
Q 026940          165 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FAG----KQLED-GRTLADYNIQKESTLHLVLRLRGGDF  230 (230)
Q Consensus       165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~-~~g----~~L~d-~~tL~~~~i~~~~~i~l~~~~~gg~~  230 (230)
                      +++.++..+|+.+|++.+++.++++++ ..||- +.+    ..|.| +.||.++++.++..|.+-.+..+|.|
T Consensus       154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W  226 (231)
T 3jyu_A          154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW  226 (231)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred             EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence            456778999999999999999999987 58876 332    45654 68999999999999999999988864

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.76  E-value=0.0059  Score=38.99  Aligned_cols=65  Identities=12%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEec---CcccCCCccHhhhcccc
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK  139 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~L~d~~tL~~~~i~~  139 (230)
                      ..+++.|+....+...+.|++..+.++|--.|+++..+.|....|...   +.+|+-+++|.+|||..
T Consensus         9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A            9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            456777777788889999999999999999999999999999999843   46788899999999985

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=96.64  E-value=0.011  Score=37.25  Aligned_cols=61  Identities=11%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |+|.|+........++++++.||++|-+    ..|+|++.-....||+.+..+.      +.+|+++.++-
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~   61 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR   61 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence            8999999855566789999999999887    8999998887778998887665      22477776654

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=96.56  E-value=0.041  Score=34.13  Aligned_cols=68  Identities=22%  Similarity=0.272  Sum_probs=49.6

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .+|+|.++... ....++++...|+.+|.+.+    ++++....+..+|.....+.     -+++||.|.++.-..||
T Consensus         3 ~~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG   70 (70)
T 1ryj_A            3 IGMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG   70 (70)
T ss_dssp             CCEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred             eeEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence            34667766433 23456777778999999876    45667777779998886544     68999999888777766

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=96.43  E-value=0.0069  Score=42.55  Aligned_cols=67  Identities=21%  Similarity=0.362  Sum_probs=54.3

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhcccc-CCCCCceEEE--EcCeecCC-CCcccccCCCCCCEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL  219 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~-~~~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~i  219 (230)
                      ..|.|+..+|..+.-.++.++||.+|..-|.... +.....+.|+  |..+.++| ++||.+.|+.+...+
T Consensus        53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            5677888899999999999999999999998863 3556677777  67788864 789999999985544

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.35  E-value=0.017  Score=39.41  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=55.5

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--ecccccc--CCccccccccccccceeeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~--d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +|-|+..+|..+.-.+..++||.+|...|... +..+....|.  |-.+.+.  .+.||.+.|+.+...+.+..
T Consensus        25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            57889999999999999999999999999965 5555556665  4456675  46899999999988876653

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=96.17  E-value=0.017  Score=40.55  Aligned_cols=69  Identities=20%  Similarity=0.338  Sum_probs=55.9

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHh-CCCCCCcEEE--ecCcccCC-CccHhhhccccCCce
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL  143 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~--~~g~~L~d-~~tL~~~~i~~~~~i  143 (230)
                      +...|.|+..+|..+.-.++.++||.+|.+-|.... +.......|+  |-.+.+.| +.||.+.|+.+...+
T Consensus        51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            457889999999999999999999999999998864 3555667777  56677865 689999999985543

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.89  E-value=0.065  Score=36.33  Aligned_cols=63  Identities=38%  Similarity=0.488  Sum_probs=43.9

Q ss_pred             CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEEc----CeecCCC-------------CcccccCCCCC
Q 026940          162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------RTLADYNIQKE  216 (230)
Q Consensus       162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~~----g~~L~d~-------------~tL~~~~i~~~  216 (230)
                      +..+++.|-..+||.++|++|-+..  |.|      ++.+.|.|.    |+.|.|.             .||++|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4557777888999999999985533  333      345667752    3555431             48999999999


Q ss_pred             CEEEEEEE
Q 026940          217 STLHLVLR  224 (230)
Q Consensus       217 ~~i~l~~~  224 (230)
                      +++-++.+
T Consensus       103 atl~l~~~  110 (111)
T 4e71_A          103 ATLILSKV  110 (111)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEeC
Confidence            99988654

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=95.64  E-value=0.066  Score=37.65  Aligned_cols=65  Identities=32%  Similarity=0.525  Sum_probs=46.4

Q ss_pred             CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE----cCe-ecCCC-------------CcccccCCCC
Q 026940          162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK  215 (230)
Q Consensus       162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~----~g~-~L~d~-------------~tL~~~~i~~  215 (230)
                      .+.+++.|-..+||.++|++|-+..  |.|      ++..-|.|    .|+ .|.|.             .||+.|+|.+
T Consensus        40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            3568888889999999999986643  343      34556665    233 35442             3899999999


Q ss_pred             CCEEEEEEEec
Q 026940          216 ESTLHLVLRLR  226 (230)
Q Consensus       216 ~~~i~l~~~~~  226 (230)
                      |+++.++.+..
T Consensus       120 ga~l~l~~~~~  130 (138)
T 2r2o_A          120 GATVALVPCLT  130 (138)
T ss_dssp             TCEEEEEEC--
T ss_pred             CCEEEEEECCC
Confidence            99999987753

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.50  E-value=0.063  Score=36.40  Aligned_cols=62  Identities=39%  Similarity=0.512  Sum_probs=43.7

Q ss_pred             CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec----CcccCC-------------CccHhhhccccC
Q 026940           86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLED-------------GRTLADYNIQKE  140 (230)
Q Consensus        86 g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~~L~d-------------~~tL~~~~i~~~  140 (230)
                      +..+++.+-..+||.++|++|-+..  |.|      ++...|-|.    |+.|.|             -.||+.|++++|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4568888999999999999997653  343      345667662    233433             148999999999


Q ss_pred             CceEEEE
Q 026940          141 STLHLVL  147 (230)
Q Consensus       141 ~~i~l~~  147 (230)
                      +++.+..
T Consensus       103 atl~l~~  109 (111)
T 4e71_A          103 ATLILSK  109 (111)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9997753

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=95.36  E-value=0.061  Score=34.20  Aligned_cols=61  Identities=18%  Similarity=0.383  Sum_probs=52.9

Q ss_pred             EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940           13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus        13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      +.-.++-.+++..||+.++.+.|++-+.-.+++++..|+++++|.+.+++....+.+.+..
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi   65 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV   65 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence            4446777889999999999999999999999999888999999999999988887766543

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=95.30  E-value=0.14  Score=32.55  Aligned_cols=61  Identities=18%  Similarity=0.383  Sum_probs=51.9

Q ss_pred             eEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      +.-.++-+.++..||+.++.+.|+..+...+...+..|+++++|-+.+++-...+.+.+..
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi   65 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV   65 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence            3445667789999999999999999999988888888999999999999987777766653

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=95.04  E-value=0.075  Score=40.80  Aligned_cols=63  Identities=22%  Similarity=0.329  Sum_probs=50.6

Q ss_pred             eEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEE-ec-C---cccCC-CccHhhhccccCCceEEEEEee
Q 026940           88 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA-G---KQLED-GRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~-~~-g---~~L~d-~~tL~~~~i~~~~~i~l~~~~~  150 (230)
                      .+.+.++..+|+.+|++.++..++++++ ..||. +. .   ..|++ +.||.++++.++..|.+-.+..
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~  210 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE  210 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence            3567889999999999999999999987 68876 22 2   34655 5799999999999887766543

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=94.97  E-value=0.066  Score=33.63  Aligned_cols=66  Identities=14%  Similarity=0.350  Sum_probs=47.6

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |+|.|+........+++++..||.+|-+    ..|+|++......||+....+.      +.+||.|.++--..||
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~   66 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG   66 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence            4566775544455688999999998865    5688888887778998886544      3459999776655555

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=94.94  E-value=0.08  Score=41.06  Aligned_cols=62  Identities=19%  Similarity=0.284  Sum_probs=50.6

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEe-cc----ccccC-Cccccccccccccceeeeeee
Q 026940           12 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~-~g----~~l~d-~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      .++..++..+||.+|++++...++++++ .-||+. .+    ..|.+ +.||.++++.++..|.+-++.
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~  221 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN  221 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence            3567789999999999999999999997 568874 42    44665 589999999999988887664

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=94.86  E-value=0.27  Score=34.01  Aligned_cols=64  Identities=28%  Similarity=0.445  Sum_probs=45.8

Q ss_pred             cCceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE-cC---e-ecCC--------C-----CcccccCCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLED--------G-----RTLADYNIQ  214 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~-~g---~-~L~d--------~-----~tL~~~~i~  214 (230)
                      ++..+++.|-..+||.++|++|-+..  +.|      ++.+.|.| .|   + .|.|        +     .||++|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            34567788888999999999985533  333      45677776 23   3 3543        1     489999999


Q ss_pred             CCCEEEEEEE
Q 026940          215 KESTLHLVLR  224 (230)
Q Consensus       215 ~~~~i~l~~~  224 (230)
                      +|+++-+..+
T Consensus        95 dgatv~l~~~  104 (127)
T 3h6n_A           95 EGASLAMSLI  104 (127)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCEEEEEEc
Confidence            9999998765

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.76  E-value=0.12  Score=36.40  Aligned_cols=64  Identities=31%  Similarity=0.515  Sum_probs=45.4

Q ss_pred             eeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec----Cc-ccCCC-------------ccHhhhccccC
Q 026940           87 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE  140 (230)
Q Consensus        87 ~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~-~L~d~-------------~tL~~~~i~~~  140 (230)
                      +.+++.|-..+||.++|++|-+..  +.|      ++..-|-|.    |+ .|.|.             .||+.|++++|
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            568899999999999999998754  443      334455551    22 25442             38999999999


Q ss_pred             CceEEEEEee
Q 026940          141 STLHLVLRLR  150 (230)
Q Consensus       141 ~~i~l~~~~~  150 (230)
                      +++.++.+..
T Consensus       121 a~l~l~~~~~  130 (138)
T 2r2o_A          121 ATVALVPCLT  130 (138)
T ss_dssp             CEEEEEEC--
T ss_pred             CEEEEEECCC
Confidence            9998876543

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=94.63  E-value=0.24  Score=32.76  Aligned_cols=73  Identities=14%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             cceeEEEEecc------C-ceeEEEeeccccHHHHHHHhccccC-C----------CCCceEEEEcCeecCCCCcccccC
Q 026940          151 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN  212 (230)
Q Consensus       151 ~~~~i~v~~~~------~-~~~~i~v~~~~tV~~lK~~i~~~~~-~----------~~~~q~L~~~g~~L~d~~tL~~~~  212 (230)
                      +.|+|.|+...      | ....++++...||.+|.+.+...+. +          ......+..||+....     +.-
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~   82 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE   82 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence            44667777532      3 3567788778999999999877652 1          1234556678876652     567


Q ss_pred             CCCCCEEEEEEEecCC
Q 026940          213 IQKESTLHLVLRLRGG  228 (230)
Q Consensus       213 i~~~~~i~l~~~~~gg  228 (230)
                      +++||.|.++--..||
T Consensus        83 L~dGDeV~i~ppv~GG   98 (98)
T 1vjk_A           83 LKDGDVVGVFPPVSGG   98 (98)
T ss_dssp             CCTTCEEEEESCC---
T ss_pred             CCCCCEEEEECCCCCC
Confidence            8999999887766665

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=93.91  E-value=0.41  Score=29.74  Aligned_cols=58  Identities=14%  Similarity=0.370  Sum_probs=41.2

Q ss_pred             EEEeeccccHHHHHHHhccccCCCC--CceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          166 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~i~v~~~~tV~~lK~~i~~~~~~~~--~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .+++ ...||.+|.+.+....++..  ....+.-||....+    .+.-+++||+|.++--..||
T Consensus        15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG   74 (74)
T 3rpf_C           15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG   74 (74)
T ss_dssp             CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred             EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence            3556 56899999999987644322  44566678876432    34568999999998887776

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=93.90  E-value=0.062  Score=37.73  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940           13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus        13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~   46 (230)
                      .++.|...+|+.+|+..|.+.+|+|+++|||+.-
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~   91 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM   91 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence            4678889999999999999999999999999954

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=93.85  E-value=0.25  Score=34.16  Aligned_cols=64  Identities=27%  Similarity=0.397  Sum_probs=46.0

Q ss_pred             cCeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec-C---c-ccCC-------------CccHhhhccc
Q 026940           85 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED-------------GRTLADYNIQ  138 (230)
Q Consensus        85 ~g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d-------------~~tL~~~~i~  138 (230)
                      ++..+++.+-..+||.++|++|-+..  +.|      ++.+.|-|. |   . .|.|             -.||+.|+++
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            45568888999999999999997653  333      345666652 2   2 2443             1489999999


Q ss_pred             cCCceEEEEE
Q 026940          139 KESTLHLVLR  148 (230)
Q Consensus       139 ~~~~i~l~~~  148 (230)
                      +|+++.+..+
T Consensus        95 dgatv~l~~~  104 (127)
T 3h6n_A           95 EGASLAMSLI  104 (127)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCEEEEEEc
Confidence            9999977644

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=93.85  E-value=0.25  Score=33.79  Aligned_cols=64  Identities=31%  Similarity=0.480  Sum_probs=45.2

Q ss_pred             CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE-cC---e-ecCC--C-----------CcccccCCCC
Q 026940          162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLED--G-----------RTLADYNIQK  215 (230)
Q Consensus       162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~-~g---~-~L~d--~-----------~tL~~~~i~~  215 (230)
                      ...+++.|-..+||.++|++|-+..  |.|      ++.+.|.| .|   + .|.|  .           .||++|+|.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            3457777888999999999985533  343      34566765 23   2 3433  1           4899999999


Q ss_pred             CCEEEEEEEe
Q 026940          216 ESTLHLVLRL  225 (230)
Q Consensus       216 ~~~i~l~~~~  225 (230)
                      |+++.++.|.
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999998764

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=93.70  E-value=0.35  Score=29.80  Aligned_cols=63  Identities=22%  Similarity=0.283  Sum_probs=45.0

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  148 (230)
                      .|+|++....+ ...++++...|+.+|.+.+    ++++....+..||.....+.     -+++|+.|.+...
T Consensus         4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~   66 (70)
T 1ryj_A            4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV   66 (70)
T ss_dssp             CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred             eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence            47777764432 2456777788999998875    56677666778988886554     6788999877644

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=93.68  E-value=0.27  Score=31.84  Aligned_cols=61  Identities=13%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             cCceeEEEeecc-ccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~-~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.  ++++.. .||.+|.+.+    ++++....+..||..+..+ ...+.-+++||.|.++--..||
T Consensus        26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG   87 (87)
T 1tyg_B           26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG   87 (87)
T ss_dssp             TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred             CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence            4554  445666 8999998876    4667777777899887642 4556679999999998877766

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=93.66  E-value=0.27  Score=33.63  Aligned_cols=63  Identities=32%  Similarity=0.480  Sum_probs=44.4

Q ss_pred             CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEec-Cc----ccCC-------------CccHhhhcccc
Q 026940           86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-GK----QLED-------------GRTLADYNIQK  139 (230)
Q Consensus        86 g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g~----~L~d-------------~~tL~~~~i~~  139 (230)
                      ...+++.|-..+||.++|++|-+..  +.|      ++...|-|. |.    .|.|             -.||+.|++++
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            4457888899999999999997643  443      334556652 21    1332             14899999999


Q ss_pred             CCceEEEEE
Q 026940          140 ESTLHLVLR  148 (230)
Q Consensus       140 ~~~i~l~~~  148 (230)
                      |+++.+..+
T Consensus       106 gatl~l~~~  114 (117)
T 4e74_A          106 GSVVALVSK  114 (117)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999988754

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=93.64  E-value=0.14  Score=32.77  Aligned_cols=45  Identities=11%  Similarity=0.187  Sum_probs=38.3

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  199 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g  199 (230)
                      +.|.|+..  -++.+.+++..+..+|+++|+++.+++++..+|.|..
T Consensus         6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            44555533  6888999999999999999999999999999999866

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=93.17  E-value=0.22  Score=31.93  Aligned_cols=44  Identities=11%  Similarity=0.181  Sum_probs=36.9

Q ss_pred             EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026940            4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g   47 (230)
                      .||..=..++.|+++++.+..+|.++|.++.++|++.-.|.|..
T Consensus         7 ~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            7 TLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             EEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             EEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            33333337999999999999999999999999999888888854

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=92.45  E-value=0.31  Score=29.40  Aligned_cols=61  Identities=15%  Similarity=0.331  Sum_probs=43.3

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .+|+.+.  + ...||.+|.+.+    +.++....+..||.....+ .-.+.-+++||.|.++--..||
T Consensus         4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG   64 (64)
T 2cu3_A            4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG   64 (64)
T ss_dssp             ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred             ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence            3566554  4 568999998877    4556667777899877532 3455678999999988877766

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=92.33  E-value=0.86  Score=29.96  Aligned_cols=69  Identities=12%  Similarity=0.269  Sum_probs=46.9

Q ss_pred             CceeeEEEecc------C-eeEeeecCCCChHHHHHHHHHhHhC-C----------CCCCcEEEecCcccCCCccHhhhc
Q 026940           75 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN  136 (230)
Q Consensus        75 ~~~~v~v~~~~------g-~~~~i~v~~~~tV~~lK~~i~~~~~-i----------~~~~q~L~~~g~~L~d~~tL~~~~  136 (230)
                      +.|.|+|+...      | ....+++....||.+|.+.+..... +          ......+..||+....     +..
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~   82 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE   82 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence            46777777642      3 4567788888999999999987642 1          1234556678877653     566


Q ss_pred             cccCCceEEEEE
Q 026940          137 IQKESTLHLVLR  148 (230)
Q Consensus       137 i~~~~~i~l~~~  148 (230)
                      +++|+.|.+...
T Consensus        83 L~dGDeV~i~pp   94 (98)
T 1vjk_A           83 LKDGDVVGVFPP   94 (98)
T ss_dssp             CCTTCEEEEESC
T ss_pred             CCCCCEEEEECC
Confidence            889999877643

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=92.25  E-value=0.55  Score=29.15  Aligned_cols=68  Identities=12%  Similarity=0.267  Sum_probs=44.9

Q ss_pred             CEEEEEccCCcE-EEEEecCCCcHHHHHHHhhhhhCCCC--CceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.|.|+....-. -.+++ ...||.+|.+.+....++..  ..-.+..||+.+.+    .+.-+++|+.+.++...
T Consensus         1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv   71 (74)
T 3rpf_C            1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV   71 (74)
T ss_dssp             CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred             CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence            788888875321 34667 67899999999987544332  23345567776443    24457888888877543

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=92.10  E-value=0.57  Score=30.13  Aligned_cols=61  Identities=15%  Similarity=0.251  Sum_probs=44.7

Q ss_pred             ceeEEEeeccccHHHHHHHhccccC-CC----------CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          163 KTITLEVESSDTIDNVKAKIQDKEG-IP----------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       163 ~~~~i~v~~~~tV~~lK~~i~~~~~-~~----------~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ....++++...||.+|.+.+...+. +.          .....+.-||+....     ++-+++||.|.++--..||
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG   89 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG   89 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence            4567778778899999999988763 10          012566678877654     4568999999998877776

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=91.83  E-value=0.56  Score=30.30  Aligned_cols=57  Identities=11%  Similarity=0.145  Sum_probs=40.5

Q ss_pred             CCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         9 ~g~~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      +|+.+  ++..+ .||.+|.+.+    ++++..-.+..||..+.. ....+.-+.+|+.|.++..
T Consensus        26 NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~   83 (87)
T 1tyg_B           26 NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHF   83 (87)
T ss_dssp             TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEE
T ss_pred             CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEcc
Confidence            66644  45666 8999999865    677766666788877643 3455667899999888753

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=91.77  E-value=2.1  Score=29.53  Aligned_cols=61  Identities=34%  Similarity=0.541  Sum_probs=41.6

Q ss_pred             ceeEEEeeccccHHHHHHHhccc----cCCC----CCceEEEE-cC---eecC----------CC----CcccccCCCCC
Q 026940          163 KTITLEVESSDTIDNVKAKIQDK----EGIP----PDQQRLIF-AG---KQLE----------DG----RTLADYNIQKE  216 (230)
Q Consensus       163 ~~~~i~v~~~~tV~~lK~~i~~~----~~~~----~~~q~L~~-~g---~~L~----------d~----~tL~~~~i~~~  216 (230)
                      +.+++.+-..+||.++|++|-+.    .|.|    ++.+.|.| .|   ..|.          +.    .||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            45777787899999999998442    2554    44566665 22   2222          11    37889999999


Q ss_pred             CEEEEEE
Q 026940          217 STLHLVL  223 (230)
Q Consensus       217 ~~i~l~~  223 (230)
                      +++-++.
T Consensus       119 atlal~k  125 (126)
T 3kuz_A          119 STIKVFK  125 (126)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEee
Confidence            9998765

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=91.75  E-value=0.49  Score=29.89  Aligned_cols=65  Identities=14%  Similarity=0.259  Sum_probs=45.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC-CCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.|+|   +|+.+.+....+.||.+|-+    ..|++ +..--+.+||..+.. ....++-+.+|+.|.++-..
T Consensus         1 M~I~v---NGe~~e~~~~~~~Tl~~LL~----~l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~V   66 (78)
T 2k5p_A            1 MNLTV---NGKPSTVDGAESLNVTELLS----ALKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFM   66 (78)
T ss_dssp             CEEEE---TTEEEECSSCSCEEHHHHHH----HHTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCC
T ss_pred             CEEEE---CCEEEEcCCCCCCcHHHHHH----HcCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeee
Confidence            66665   77755432216789999988    55788 776677789987744 45667778999998887543

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=91.42  E-value=1  Score=35.90  Aligned_cols=72  Identities=17%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEEE---cC--eecCCCCcccccCCCCCCEEEEEEEe
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~~---~g--~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      +.+.|...+| ++.+.+++++|+.++-+.|+++.|+... .+-|.+   +|  .-|+.++++.+.+++.+....+.+|.
T Consensus         2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~   79 (294)
T 1ef1_A            2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA   79 (294)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred             EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence            5677788887 6789999999999999999999998544 345554   33  24677888988877766666565553

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=91.38  E-value=0.26  Score=31.53  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP   37 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~   37 (230)
                      .|.+ ..++..|.+.|+++.+..+|+++|..+..+.
T Consensus        14 KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~   48 (85)
T 1ip9_A           14 KIKF-YYKDDIFALMLKGDTTYKELRSKIAPRIDTD   48 (85)
T ss_dssp             EEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred             EEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            3444 3367899999999999999999999999994

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=91.32  E-value=0.33  Score=29.48  Aligned_cols=61  Identities=11%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +|+.+  +++...||.+|.+.+    +.++....+..||...... ...+.-+++||.|.++--..||
T Consensus         6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG   66 (66)
T 1f0z_A            6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_dssp             SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred             CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence            45543  456778999998877    4566777777899877532 3445578999999888777666

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=90.81  E-value=0.56  Score=29.48  Aligned_cols=59  Identities=7%  Similarity=0.153  Sum_probs=41.6

Q ss_pred             eeEEEeeccccHHHHHHHhccccC-----CCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~-----~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...++ ....||.+|.+.+...+.     ++.....+..||+....     +.-+++||.|.++-...||
T Consensus        18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG   81 (81)
T 1fm0_D           18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG   81 (81)
T ss_dssp             EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred             eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence            34454 456799999999886642     22334566688877642     4568999999988777776

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=90.54  E-value=1.3  Score=35.69  Aligned_cols=75  Identities=11%  Similarity=0.099  Sum_probs=56.0

Q ss_pred             ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEE--cCe--ecCCCCcccccCCCCCCEEEEEEE
Q 026940          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~--~g~--~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ...+.+.|...+| ++.+.+++++|+.++-+.|+.+.|+.. +.+-|.+  +|.  -|+.++++.+.+++.+....+.+|
T Consensus        20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr   98 (314)
T 1h4r_A           20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL   98 (314)
T ss_dssp             -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred             CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence            3456778888888 788999999999999999999999854 3445554  442  367788999988776665555555


Q ss_pred             e
Q 026940          225 L  225 (230)
Q Consensus       225 ~  225 (230)
                      .
T Consensus        99 ~   99 (314)
T 1h4r_A           99 A   99 (314)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=90.51  E-value=1.3  Score=28.76  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=35.2

Q ss_pred             EEEc-cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEecc
Q 026940            4 FVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG   47 (230)
Q Consensus         4 ~v~~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~g   47 (230)
                      .||. .+|..+.+.++++.+..+|.+++.+..++++.+ -.+.|..
T Consensus         8 kvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D   53 (89)
T 1vd2_A            8 RVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID   53 (89)
T ss_dssp             EEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred             EEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence            3443 368999999999999999999999999998755 3555643

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=89.95  E-value=1.3  Score=28.66  Aligned_cols=48  Identities=10%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCC-cEEEecCcc
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ  125 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~g~~  125 (230)
                      |+|++. .+|....+.++++.+..+|.+++.+.++++... ..+.|....
T Consensus         7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe   55 (89)
T 1vd2_A            7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE   55 (89)
T ss_dssp             EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred             EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence            555553 567788999999999999999999999987544 677787654

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=89.83  E-value=0.19  Score=35.18  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             eEEEeeccccHHHHHHHhccccCCCCCceEEE
Q 026940          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  196 (230)
Q Consensus       165 ~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~  196 (230)
                      ..+.|..++|+.+|+..|++.+|+|+++|||-
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW   89 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW   89 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence            35788899999999999999999999999875

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=89.80  E-value=2.3  Score=27.40  Aligned_cols=61  Identities=11%  Similarity=0.170  Sum_probs=41.6

Q ss_pred             EEEeeccccHHHHHHHhccccCC------C-------CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          166 TLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~i~v~~~~tV~~lK~~i~~~~~~------~-------~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .++. ...||.+|.+.+..++.-      .       .....+.-||.......- .+.-+++||+|.++--..||
T Consensus        20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG   93 (93)
T 3dwg_C           20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG   93 (93)
T ss_dssp             EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred             EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence            4553 457999999999887631      1       113556678876653222 24568999999998888877

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=89.74  E-value=0.44  Score=29.72  Aligned_cols=59  Identities=14%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             eeEEEeeccccHHHHHHHhccccCCCCCce--EEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q--~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ...++++...||.+|.+.+...+. .....  .+..||+....+     .-+++||.|.++--..||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG   77 (77)
T 2q5w_D           17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG   77 (77)
T ss_dssp             EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence            445666677899999999877642 01223  666888877643     568999999888777666

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=89.70  E-value=0.75  Score=27.80  Aligned_cols=62  Identities=13%  Similarity=0.202  Sum_probs=42.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |.|+|   +|+.+  ++....||.+|.+.+    ++++..-.+..||..+.. ....+.-+++|+.+.++..
T Consensus         1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~~   62 (66)
T 1f0z_A            1 MQILF---NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQV   62 (66)
T ss_dssp             CCEEE---SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEES
T ss_pred             CEEEE---CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEee
Confidence            45554   67754  556788999999865    567766666678876643 2344556788888887643

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=89.66  E-value=1.5  Score=38.57  Aligned_cols=74  Identities=15%  Similarity=0.254  Sum_probs=55.9

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEEc---C--eecCCCCcccccCCCCCCEEEEEEE
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..+.+.|...+| ++.+.+++++|+.+|-..|+...|+.. +.+-|.+.   |  .-|+.++++.+.+++.+....+.+|
T Consensus         3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR   81 (575)
T 2i1j_A            3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR   81 (575)
T ss_dssp             CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred             ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence            346778888887 678999999999999999999999854 34556542   2  3567788898888777776666655


Q ss_pred             e
Q 026940          225 L  225 (230)
Q Consensus       225 ~  225 (230)
                      .
T Consensus        82 v   82 (575)
T 2i1j_A           82 A   82 (575)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=89.23  E-value=0.41  Score=30.26  Aligned_cols=64  Identities=14%  Similarity=0.305  Sum_probs=47.0

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCC-CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~-~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      +|+.+.+......||.+|-+.+    +++ +....+..||..+..+ ...++-+++||.|.++.-..||+
T Consensus         6 NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~   70 (78)
T 2k5p_A            6 NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK   70 (78)
T ss_dssp             TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred             CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence            4664443211668999997755    566 7777788999888643 56777899999999988888885

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=89.01  E-value=1.8  Score=29.80  Aligned_cols=60  Identities=35%  Similarity=0.496  Sum_probs=41.2

Q ss_pred             cEEEEEecCCCcHHHHHHHhhhhh----CCCCC----ceEEEec-c---ccc----------cC----Cccccccccccc
Q 026940           11 KTITLEVESSDTIDNVKAKIQDKE----GIPPD----QQRLIFA-G---KQL----------ED----GRTLADYNIQKE   64 (230)
Q Consensus        11 ~~~~~~v~~~~tv~~lK~~i~~~~----gi~~~----~q~l~~~-g---~~l----------~d----~~tl~~~~i~~~   64 (230)
                      ..+++.+-.-+||.++|++|-+..    |.|-+    ...|-|. |   ..|          .+    -.||+.|++.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            468899999999999999986653    66653    3334441 1   111          22    257889999999


Q ss_pred             cceeee
Q 026940           65 STLHLV   70 (230)
Q Consensus        65 ~~i~l~   70 (230)
                      +++.++
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            988765

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=87.63  E-value=2.2  Score=27.56  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=43.7

Q ss_pred             CEEEEEccC------CcEEEEEecCCCcHHHHHHHhhhhhCC------C-------CCceEEEeccccccCCcccccccc
Q 026940            1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI   61 (230)
Q Consensus         1 m~v~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~gi------~-------~~~q~l~~~g~~l~d~~tl~~~~i   61 (230)
                      |.|.|+...      |....++. +..||++|.+.+..++.-      .       ...-.+..||+......- .+.-+
T Consensus         1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L   78 (93)
T 3dwg_C            1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI   78 (93)
T ss_dssp             -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred             CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence            677777664      43334664 568999999999887520      0       012355677766553221 24568


Q ss_pred             ccccceeeeeee
Q 026940           62 QKESTLHLVLRL   73 (230)
Q Consensus        62 ~~~~~i~l~~~~   73 (230)
                      .+|+.|.++...
T Consensus        79 ~~gDeV~i~Ppv   90 (93)
T 3dwg_C           79 ADGDSVTILPAV   90 (93)
T ss_dssp             CTTCEEEEEECC
T ss_pred             CCCCEEEEECCC
Confidence            889988877544

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=87.45  E-value=2.9  Score=36.80  Aligned_cols=63  Identities=32%  Similarity=0.533  Sum_probs=44.5

Q ss_pred             ceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE-c---Ce-ecCCC-------------CcccccCCCCC
Q 026940          163 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQKE  216 (230)
Q Consensus       163 ~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~-~---g~-~L~d~-------------~tL~~~~i~~~  216 (230)
                      +.+++.|-..+||.++|++|-+..  |.|      ++.+.|.| .   |+ .|.|.             .||++|+|.+|
T Consensus       274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  353 (644)
T 3hm6_X          274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  353 (644)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence            457788888999999999986432  333      35566765 2   23 35431             48999999999


Q ss_pred             CEEEEEEEe
Q 026940          217 STLHLVLRL  225 (230)
Q Consensus       217 ~~i~l~~~~  225 (230)
                      +++-++.+.
T Consensus       354 a~v~L~p~~  362 (644)
T 3hm6_X          354 ATVALVPCL  362 (644)
T ss_dssp             CEEEEEEC-
T ss_pred             cEEEEEecc
Confidence            999887664

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=87.33  E-value=0.19  Score=31.61  Aligned_cols=54  Identities=9%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             EEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .++++...||.+|.+.+.    +++....+..||+....+     .-+++||.|.++--..||
T Consensus        24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG   77 (77)
T 1rws_A           24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG   77 (77)
T ss_dssp             CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred             EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence            345566789999988764    566666777899887654     568899999877666665

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=87.02  E-value=2.3  Score=35.08  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc
Q 026940            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK   48 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~   48 (230)
                      .-....+.+++..|+.+++++++..++++++.|.+.+.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~  359 (396)
T 4eut_A          320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR  359 (396)
T ss_dssp             TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSS
T ss_pred             cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCC
Confidence            3456788999999999999999999999999999999873

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=86.91  E-value=4.9  Score=27.22  Aligned_cols=63  Identities=17%  Similarity=0.223  Sum_probs=39.5

Q ss_pred             eeEEEeec---cccHHHHHHHhccccC-CC---------CC-ceEEEEcCeecCCCCcc--cccCCCCCCEEEEEEEecC
Q 026940          164 TITLEVES---SDTIDNVKAKIQDKEG-IP---------PD-QQRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       164 ~~~i~v~~---~~tV~~lK~~i~~~~~-~~---------~~-~q~L~~~g~~L~d~~tL--~~~~i~~~~~i~l~~~~~g  227 (230)
                      .+.++++.   ..||.+|-..+.+++. ..         .. ...++.||.   |-.-|  .++-+++||.|.++--..|
T Consensus        31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~---di~~l~gldt~L~dGDeV~iip~vaG  107 (114)
T 1wgk_A           31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA---DWELLGELDYQLQDQDSILFISTLHG  107 (114)
T ss_dssp             EEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS---BHHHHCTTTCBCCSSEEEEEEECSCC
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe---eeeccCCcCcCCCCCCEEEEeCCCCC
Confidence            55677773   3699999999998871 11         11 122223332   11122  3567999999999888888


Q ss_pred             CC
Q 026940          228 GD  229 (230)
Q Consensus       228 g~  229 (230)
                      |+
T Consensus       108 G~  109 (114)
T 1wgk_A          108 GS  109 (114)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=85.26  E-value=2.3  Score=27.16  Aligned_cols=62  Identities=13%  Similarity=0.240  Sum_probs=41.3

Q ss_pred             EEEeeccccHHHHHHHhccccC------C-----CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          166 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~i~v~~~~tV~~lK~~i~~~~~------~-----~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      .++++...||.+|.+.+...+.      +     ......+..||...... .-.+.-+++||+|.++--..||
T Consensus        18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG   90 (90)
T 2g1e_A           18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG   90 (90)
T ss_dssp             EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred             EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence            3455566899999999887752      1     11345666888766421 1234568999999888777666

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=85.23  E-value=2.9  Score=26.65  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=41.4

Q ss_pred             eeEeeecCCCChHHHHHHHHHhHhC-C-----CC-----CCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940           87 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        87 ~~~~i~v~~~~tV~~lK~~i~~~~~-i-----~~-----~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  150 (230)
                      ....++++...||.+|.+.+..+.. +     ..     ....+..||+....     +.-+++|+.|.+.....
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~   87 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS   87 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence            4567888888999999999988763 1     10     12566678877654     45688899998775443

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=84.38  E-value=4.7  Score=31.91  Aligned_cols=68  Identities=16%  Similarity=0.258  Sum_probs=48.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEec---cc--cccCCccccccccccccceee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~---g~--~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      |.+.|..++| ++.+.+++..|+.++=+.|.++.|+.... --|.+.   |.  -|+.++.+.+.++..+....+
T Consensus         2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l   75 (294)
T 1ef1_A            2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF   75 (294)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred             EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence            4677888887 78899999999999999999999998643 244442   32  266677787776554444333

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=84.21  E-value=1.1  Score=40.25  Aligned_cols=51  Identities=31%  Similarity=0.602  Sum_probs=42.0

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec-cccccCCcccccc
Q 026940            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY   59 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-g~~l~d~~tl~~~   59 (230)
                      .++...+.+.+++|+.+++..|++.+|||++.|.+++. |-.+++......|
T Consensus       320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~  371 (676)
T 3qa8_A          320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY  371 (676)
T ss_dssp             SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred             ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence            35667789999999999999999999999999999975 5556666565554

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=84.05  E-value=5.2  Score=35.18  Aligned_cols=64  Identities=28%  Similarity=0.474  Sum_probs=44.8

Q ss_pred             CceeEEEeeccccHHHHHHHhcccc--CCC------CCceEEEE-c---Ce-ecCC-------------CCcccccCCCC
Q 026940          162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLED-------------GRTLADYNIQK  215 (230)
Q Consensus       162 ~~~~~i~v~~~~tV~~lK~~i~~~~--~~~------~~~q~L~~-~---g~-~L~d-------------~~tL~~~~i~~  215 (230)
                      .+.+++.|-..+||.++|++|-+..  |.|      ++.+.|.| .   |+ .|.|             =.||++|+|.+
T Consensus       246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D  325 (627)
T 3ig3_A          246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD  325 (627)
T ss_dssp             -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred             CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence            3567788888999999999985532  333      45566765 2   22 3433             14899999999


Q ss_pred             CCEEEEEEEe
Q 026940          216 ESTLHLVLRL  225 (230)
Q Consensus       216 ~~~i~l~~~~  225 (230)
                      |+++-++.+.
T Consensus       326 ga~v~L~p~~  335 (627)
T 3ig3_A          326 GSLVALVPKQ  335 (627)
T ss_dssp             TCEEEEEEC-
T ss_pred             CceEEEEecc
Confidence            9999998775

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=83.51  E-value=3.1  Score=33.22  Aligned_cols=74  Identities=8%  Similarity=-0.000  Sum_probs=53.1

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEEEc---C--eecCCCCcccccCCCCCCEEEEEEE
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..+.+.|...+|....+.+++.+|+.+|-..|+++.|+... .+-|.+.   |  .-|+..+++.+........+++..+
T Consensus        16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk   95 (296)
T 3qij_A           16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK   95 (296)
T ss_dssp             -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred             ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence            44778888999999999999999999999999999997543 3555542   3  3467777887765444455655544

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=82.56  E-value=7.7  Score=25.27  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=39.1

Q ss_pred             ceeEEEee--ccccHHHHHHHhccccCCC-CCc------------eEEEEcCeecCCCCcc--cccCCCCCCEEEEEEEe
Q 026940          163 KTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQ------------QRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRL  225 (230)
Q Consensus       163 ~~~~i~v~--~~~tV~~lK~~i~~~~~~~-~~~------------q~L~~~g~~L~d~~tL--~~~~i~~~~~i~l~~~~  225 (230)
                      +...++++  ...||.+|.+.+.+++.-. .+-            ..+.-||...+   .+  .++-+++||+|.++--.
T Consensus        20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~~~d~~L~dgDeVa~~Ppv   96 (99)
T 2qjl_A           20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEGEKDYILEDGDIISFTSTL   96 (99)
T ss_dssp             CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGTGGGCBCCTTCEEEEEECT
T ss_pred             cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccCCCCcCcCCCCEEEEECCC
Confidence            34556666  5689999999998876311 111            11224443211   11  35578999999888777


Q ss_pred             cCC
Q 026940          226 RGG  228 (230)
Q Consensus       226 ~gg  228 (230)
                      .||
T Consensus        97 ~GG   99 (99)
T 2qjl_A           97 HGG   99 (99)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            776

>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=82.51  E-value=5.5  Score=26.49  Aligned_cols=72  Identities=10%  Similarity=0.211  Sum_probs=49.7

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE---ecCcc--cCCCccHhhhccccCCceEEEEE
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~--L~d~~tL~~~~i~~~~~i~l~~~  148 (230)
                      +...|...+....++.+..+.|+.+++..+.++.+...+.+.|.   ++|..  |+++..--.-.+.-++.+++..+
T Consensus        10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k   86 (104)
T 1wgy_A           10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK   86 (104)
T ss_dssp             CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred             eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence            33444456777788899999999999999999999876677776   56643  45544433334555667766554

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=82.35  E-value=2.3  Score=26.52  Aligned_cols=56  Identities=4%  Similarity=0.084  Sum_probs=37.9

Q ss_pred             eEeeecCCCChHHHHHHHHHhHhC-----CCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940           88 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        88 ~~~i~v~~~~tV~~lK~~i~~~~~-----i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  149 (230)
                      ...++ ....||.+|.+.+.....     ++.....+..||+....     +..+++|+.|.+....
T Consensus        18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv   78 (81)
T 1fm0_D           18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPV   78 (81)
T ss_dssp             EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCC
T ss_pred             eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCC
Confidence            45566 567899999999876532     23344566688876643     4567899998776443

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=82.13  E-value=2.2  Score=26.33  Aligned_cols=56  Identities=11%  Similarity=0.139  Sum_probs=38.9

Q ss_pred             eeEeeecCCCChHHHHHHHHHhHhCCCCCCc--EEEecCcccCCCccHhhhccccCCceEEEEE
Q 026940           87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q--~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  148 (230)
                      ....+++....||.+|.+.+..... .....  .+..||+....+     ..+++|+.|.+...
T Consensus        16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~pp   73 (77)
T 2q5w_D           16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPP   73 (77)
T ss_dssp             SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECC
Confidence            3456777788899999999887642 11223  566888877543     56888998877643

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=81.79  E-value=5.3  Score=25.44  Aligned_cols=46  Identities=13%  Similarity=0.090  Sum_probs=35.8

Q ss_pred             CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-ecC
Q 026940           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG  123 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g  123 (230)
                      ..|+|.+. .++..+.+.++.+.+..+|+.+|..+..+.  ...++ |++
T Consensus        11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykd   57 (85)
T 1ip9_A           11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLF   57 (85)
T ss_dssp             CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCS
T ss_pred             CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecC
Confidence            45677774 456789999999999999999999999983  44444 443

>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C

Probab=81.21  E-value=8.1  Score=24.41  Aligned_cols=60  Identities=20%  Similarity=0.321  Sum_probs=47.8

Q ss_pred             eEEEeeccccHHHHHHHhcccc-C--C---CCCceEEEEcC--eecCCCCcccccCCCCCCEEEEEEE
Q 026940          165 ITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       165 ~~i~v~~~~tV~~lK~~i~~~~-~--~---~~~~q~L~~~g--~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .-+.|+..+|+.++-++++-.. |  +   |-...+..++|  ..+..+.|+++-||.+-+.|.+.+.
T Consensus        15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~   82 (83)
T 2inc_C           15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM   82 (83)
T ss_dssp             EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred             EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence            4467888999999988887654 4  3   22246777888  8999999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-38
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-38
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-38
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	5e-38
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	5e-38
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	3e-37
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	6e-38
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	6e-38
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	2e-37
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-35
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-35
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-35
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	8e-34
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	8e-34
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	8e-34
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	2e-32
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	2e-32
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	3e-32
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	3e-32
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	3e-32
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	3e-32
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	6e-32
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	6e-32
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	2e-29
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	7e-32
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	7e-32
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	7e-32
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	1e-31
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	1e-31
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	1e-31
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	2e-30
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	2e-30
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	2e-30
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-30
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-30
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	8e-30
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-30
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-30
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	6e-30
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	4e-30
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	4e-29
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	3e-29
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	3e-29
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	6e-29
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-29
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-29
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-29
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	6e-29
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	6e-29
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	6e-29
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-28
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-28
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-28
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	5e-28
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	5e-28
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	1e-27
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	1e-27
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	1e-27
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	1e-27
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	1e-26
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	1e-26
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	6e-26
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	6e-26
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	6e-26
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	3e-21
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	5e-25
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	5e-25
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	5e-25
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	1e-24
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	1e-24
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	1e-24
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-24
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-24
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	4e-24
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	2e-24
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	2e-24
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	2e-24
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	7e-24
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	7e-24
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	7e-24
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-23
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-23
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-23
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	1e-22
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	1e-22
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	1e-22
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-22
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	3e-22
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	8e-22
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-21
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-21
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-21
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	4e-21
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	4e-21
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	4e-21
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-19
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-19
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	4e-19
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-19
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-19
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-19
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	3e-19
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	3e-19
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-18
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-18
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-18
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	3e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	9e-18
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	9e-18
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	9e-18
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-17
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-17
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-17

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 3e-38
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 3e-38
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 3e-38
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 5e-38
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 136 NIQKESTLHLVLRLRG 151
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 5e-38
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 212 NIQKESTLHLVLRLRG 227
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (309), Expect = 3e-37
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 3  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCD 62

Query: 61 IQKESTLHLVLRLRG 75
          ++++S +H+V R R 
Sbjct: 63 LEQQSIVHIVQRPRR 77

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 6e-38
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 136 NIQKESTLHLVLRLRGG 152
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 6e-38
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 212 NIQKESTLHLVLRLRGG 228
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (311), Expect = 2e-37
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 61 IQKESTLHLVLRLRGG 76
          IQ   TL L  +   G
Sbjct: 68 IQDSDTLILSKKKGSG 83

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-35
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 61 IQKESTLHLVLRL 73
          I+  S LHLVL L
Sbjct: 61 IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-35
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 137 IQKESTLHLVLRL 149
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 4e-35
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 213 IQKESTLHLVLRL 225
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 8e-34
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 61 IQKESTLHLVLRL 73
          ++  ST+ + LRL
Sbjct: 64 LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 8e-34
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 137 IQKESTLHLVLRL 149
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 8e-34
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 213 IQKESTLHLVLRL 225
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 2e-32
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 2  QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1  DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 61 I-------QKESTLHLVLRLRGGMQIFVKT 83
                  Q  +T+ L  R     +     
Sbjct: 61 FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 2e-32
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 78  QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 137 I-------QKESTLHLVLRLRGGMQIFVKT 159
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 3e-32
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 213 I-------QKESTLHLVLRLRGG 228
                   Q  +T+ L  R    
Sbjct: 61  FTSQTARPQAPATVGLAFRADDT 83

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 3e-32
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 61 IQKESTLHLVLR 72
          +     +HLV R
Sbjct: 61 VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 3e-32
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 137 IQKESTLHLVLR 148
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 3e-32
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 213 IQKESTLHLVLR 224
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 6e-32
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 54  RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 110 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 6e-32
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 130 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 185
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 186 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 2e-29
 Identities = 16/72 (22%), Positives = 31/72 (43%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 61  IQKESTLHLVLR 72
           I     L L  +
Sbjct: 89  IHDGMNLELYYQ 100

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 7e-32
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 68 HLVLRLRG 75
          HL L+ RG
Sbjct: 79 HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 7e-32
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 144 HLVLRLRG 151
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 7e-32
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 220 HLVLRLRG 227
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 1e-31
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGGMQ 78
          +Y I +++ + +++     + 
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 1e-31
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 134 DYNIQKESTLHLVLRLRGGMQ 154
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-31
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 2e-30
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLRL 73
          Y ++   T+ L++R 
Sbjct: 61 YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 2e-30
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 77  MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 135 YNIQKESTLHLVLRL 149
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 2e-30
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 153 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 211 YNIQKESTLHLVLRL 225
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-30
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 120
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 121 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 152
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 2e-30
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 196
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 197 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 228
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (262), Expect = 8e-30
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 16/92 (17%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 45
          M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 AGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 76
          AG++L + R  L DY I+    +  + +L   
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 4e-30
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 52
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53  GRTLADYNIQKESTLHLVLRLRGGM 77
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 4e-30
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 129 GRTLADYNIQKESTLHLVLRLRGGM 153
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 6e-30
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
             TL    +    T  + L  R  
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARET 100

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 4e-30
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 75  GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 129
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 4e-29
 Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 1  MQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRT 55
          M I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
          L  Y ++    + L+ +   G++   +T +G
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.2 bits (244), Expect = 3e-27
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 151 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 205
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 206 RTLADYNIQKESTLHLVLRLRGG 228
            +L  Y ++    + L+ +   G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVG 88

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 132
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 133 ADYNIQKESTLHLVL 147
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 208
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 209 ADYNIQKESTLHLVL 223
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 6e-29
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 3  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62

Query: 58 DYNIQKESTLHLVL 71
          DY I +++ + +++
Sbjct: 63 DYRIDEKNFVVVMV 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 61 IQKESTLHLVLRL 73
          I K+  + +++  
Sbjct: 64 IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 137 IQKESTLHLVLRL 149
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 213 IQKESTLHLVLRL 225
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 6e-29
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          Y++     + L++R
Sbjct: 61 YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 6e-29
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 77  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 135 YNIQKESTLHLVLR 148
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 6e-29
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 153 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 211 YNIQKESTLHLVLR 224
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 3e-28
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2  LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 61 IQKESTLHLVLR 72
          IQ   ++HLV  
Sbjct: 61 IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 3e-28
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 137 IQKESTLHLVLR 148
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.8 bits (249), Expect = 3e-28
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 213 IQKESTLHLVLR 224
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 5e-28
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 76  GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 131
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 132 LADYNIQKES--TLHLVLRLRGG 152
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (249), Expect = 5e-28
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 152 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 207
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 208 LADYNIQKES--TLHLVLRLRGG 228
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (246), Expect = 1e-27
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 1  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTL 56
          + + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + L
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 57 ADYNIQKES--TLHLVLRLRGG 76
           D   ++E    LHLV  ++ G
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSG 89

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 1e-27
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59
           + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2  DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 60 NIQKESTLHLVLR 72
           +   ST+ LV+ 
Sbjct: 62 GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 1e-27
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 135
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 136 NIQKESTLHLVLR 148
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 1e-27
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 211
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 212 NIQKESTLHLVLR 224
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.5 bits (240), Expect = 1e-26
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 133
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 134 DYNIQKESTLHLVLRLRGG 152
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.5 bits (240), Expect = 1e-26
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 209
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 210 DYNIQKESTLHLVLRLRGG 228
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.6 bits (235), Expect = 6e-26
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+  
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64

Query: 60 NIQKESTLHLVLRLRGG 76
          NI     +H      G 
Sbjct: 65 NITNNCVIHCHRSPPGA 81

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 6e-26
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 64  ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 118
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 119 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (235), Expect = 6e-26
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 140 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 194
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.2 bits (203), Expect = 3e-21
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 7  TLTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQRLIFAGKQLEDGRTLADYNIQK 63
           L    +        +I  +K  I  K  E +P P+   LI+ G++L+D +TL  Y IQ 
Sbjct: 24 QLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 83

Query: 64 ESTLHLVLR 72
           ST+H++ +
Sbjct: 84 GSTVHVLRK 92

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 5e-25
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 61  IQKESTLHLVLR 72
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 5e-25
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 137 IQKESTLHLVLR 148
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 5e-25
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 213 IQKESTLHLVLR 224
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.2 bits (226), Expect = 1e-24
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11 IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 61 IQKESTLHLVLR 72
          I   ST+H+V+R
Sbjct: 70 ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.2 bits (226), Expect = 1e-24
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 137 IQKESTLHLVLR 148
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.2 bits (226), Expect = 1e-24
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 213 IQKESTLHLVLR 224
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 2e-24
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 132
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 133 ADYNIQKESTLHLVLRLRGG 152
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 2e-24
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 208
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 209 ADYNIQKESTLHLVLRLRGG 228
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (222), Expect = 4e-24
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLA 57
          + I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L 
Sbjct: 8  LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 67

Query: 58 DYNIQKESTLHLVLRLRGG 76
             ++  + + ++     G
Sbjct: 68 ALKLKPNTKIMMMGTRESG 86

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.2 bits (226), Expect = 2e-24
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 1   MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 59  YNIQKESTLHLVLRLRGG 76
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.2 bits (226), Expect = 2e-24
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 77  MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 135 YNIQKESTLHLVLRLRGG 152
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.2 bits (226), Expect = 2e-24
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 153 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 7e-24
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 61 IQKESTLHLVLRLR 74
          ++   T+HLV++ +
Sbjct: 67 VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 7e-24
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 137 IQKESTLHLVLRLR 150
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (220), Expect = 7e-24
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 213 IQKESTLHLVLRLR 226
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 2e-23
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2  IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 61 IQKESTLHL 69
          +  ++ L L
Sbjct: 62 VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 2e-23
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 137 IQKESTLHL 145
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (216), Expect = 2e-23
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 213 IQKESTLHL 221
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 1e-22
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 1  MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 52
          ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8  LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 53 GRTLADYNI------QKESTLHLVLR 72
           +T+ DY           +T+H++++
Sbjct: 68 SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 1e-22
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 77  MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 128
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 129 GRTLADYNI------QKESTLHLVLR 148
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.5 bits (214), Expect = 1e-22
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 153 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 204
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 205 GRTLADYNI------QKESTLHLVLR 224
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 2e-22
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 76  GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 127
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 128 DGRTLADYNIQKESTLHLVLRLRGGMQ 154
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.0 bits (210), Expect = 3e-22
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 152 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 203
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 204 DGRTLADYNIQKESTLHLVLRLRGG 228
           +   L  Y +     +H++     G
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSG 91

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.8 bits (207), Expect = 8e-22
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 1  MQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LED 52
          + +F+ + L           S TI   K K++   G P     L   G          ++
Sbjct: 8  VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67

Query: 53 GRTLADYNIQKESTLHLVLRLRGGMQ 78
             L  Y +     +H++     G  
Sbjct: 68 DALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 1  MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 59 YNIQKESTLHLVLRLRGG 76
            +       ++   +  
Sbjct: 78 QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 77  MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 135 YNIQKESTLHLVLRLRGG 152
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 153 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 211 YNIQKESTLHLVLRLRGG 228
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 57
               + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18 NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 58 DYNIQKESTLHLV 70
           Y+++    L + 
Sbjct: 78 FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 133
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 134 DYNIQKESTLHLV 146
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 209
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 210 DYNIQKESTLHLV 222
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.1 bits (192), Expect = 2e-19
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 75  GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 134 DYNIQKESTLHLVLRLRGG 152
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.1 bits (192), Expect = 2e-19
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 151 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.9 bits (189), Expect = 4e-19
 Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + +         ++V    T   +K KI    G+PP  Q++++    + + +TL +  
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLREIK 75

Query: 61 IQKESTLHLVLRLRGG 76
          +   + + +V     G
Sbjct: 76 VTSGAKIMVVGSTISG 91

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-19
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5  INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 61 IQKESTLHLVLRLRGG 76
          ++    +       GG
Sbjct: 64 MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-19
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 137 IQKESTLHLVLRLRGG 152
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 76.8 bits (189), Expect = 3e-19
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 213 IQKESTLHLVLRLRGG 228
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.3 bits (190), Expect = 3e-19
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 136 NIQKESTLHLV 146
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.3 bits (190), Expect = 3e-19
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 212 NIQKESTLHLV 222
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.8 bits (186), Expect = 1e-18
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 61 IQKESTLHLV 70
          ++   T+ ++
Sbjct: 67 MKNGMTVLMM 76

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-18
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 76  GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 129
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 130 RTLADYNIQKESTLHLVLR 148
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 5e-18
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 152 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 205
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 206 RTLADYNIQKESTLHLVLR 224
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (176), Expect = 3e-17
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 1  MQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 54
          + + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E   
Sbjct: 2  LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMET 60

Query: 55 TLADYNIQKESTLHLVLR 72
           L+   IQ    + L+ +
Sbjct: 61 PLSALGIQDGCRVMLIGK 78

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 9e-18
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 61 IQKESTLHLVLRLRG 75
          +++E  + +     G
Sbjct: 63 MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 9e-18
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 137 IQKESTLHLVLRLRG 151
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (179), Expect = 9e-18
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 213 IQKESTLHLVLRLRG 227
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-17
 Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 211
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 212 NIQKESTLHLVLRLRGGD 229
            ++    +H V    G +
Sbjct: 72  GVRDGYRIHAVDVTGGNE 89

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-17
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 7  TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 59
            T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12 NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 60 NIQKESTLHLVLRLRG 75
           ++    +H V    G
Sbjct: 72 GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-17
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 83  TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 135
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 136 NIQKESTLHLVLRLRG 151
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.87
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.87
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.87
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.86
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.85
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.85
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.84
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.84
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.84
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.84
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.83
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.82
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.82
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.81
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.81
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.8
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.8
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.8
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.79
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.79
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.79
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.79
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.78
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.78
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.77
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.77
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.77
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.77
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.76
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.74
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.74
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.73
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.73
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.73
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.73
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.72
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.72
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.7
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.7
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.69
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.69
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.69
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.69
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.68
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.68
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.67
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.67
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.67
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.66
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.66
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.65
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.65
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.65
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.65
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.64
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.64
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.6
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.59
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.55
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.54
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.48
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.47
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.46
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.44
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.4
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.39
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.36
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.34
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.34
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.75
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.6
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	98.27
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	98.17
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.58
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.37
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.35
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	97.0
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	96.94
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.89
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	96.68
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	96.54
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	94.06
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	93.59
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	93.04
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	92.94
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	91.28
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	90.99
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	90.74
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	90.36
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	90.08
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	89.0
d1wgya_	104	Rap guanine nucleotide exchange factor 5, RapGEF5	88.35
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	87.85
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	87.53
d1wgya_	104	Rap guanine nucleotide exchange factor 5, RapGEF5	87.2
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	86.99
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	84.94
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	84.65
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	83.01
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	82.95
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	82.71
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	82.29
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	81.39
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	80.72

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=131.15  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=74.5

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|+|++.+|+++++++++++||.+||++|+.+.|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999999998

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=7.6e-23  Score=132.40  Aligned_cols=75  Identities=33%  Similarity=0.593  Sum_probs=72.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|||++.+|++++++|++++||++||++|++++|+||++|+|+|+|+.|+|+.+|++|+|.++++||++.++++
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999998754

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.8e-22  Score=129.68  Aligned_cols=76  Identities=34%  Similarity=0.614  Sum_probs=74.3

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      +|.|+|+..+|+++++++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.|+||
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            5889999999999999999999999999999999999999999999999999999999999999999999999997

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=2.6e-22  Score=128.49  Aligned_cols=73  Identities=62%  Similarity=0.943  Sum_probs=71.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.|+||+++|++++++|++++||++||++|++..|+||++|+|+|+|+.|+|+.+|++|||.+++++|+++++
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998863

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.9e-22  Score=129.32  Aligned_cols=75  Identities=96%  Similarity=1.311  Sum_probs=72.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|++++++|++++||++||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.++++|+|.+++++
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrg   75 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   75 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988754

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.2e-22  Score=127.20  Aligned_cols=73  Identities=34%  Similarity=0.560  Sum_probs=70.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|++++++|++++||++||++|+...|+||++|+|+|+|+.|+|+.+|++|||.+|+++|+.+++
T Consensus         4 ~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998763

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-21  Score=128.75  Aligned_cols=80  Identities=34%  Similarity=0.531  Sum_probs=76.8

Q ss_pred             ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      ..+|.|+|++.+|++++++|++++||.+||++|+.+.|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.|.++|.
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~gp   84 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999884

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=129.01  Aligned_cols=74  Identities=34%  Similarity=0.515  Sum_probs=71.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|||++++|++++++|++++||.+||++|+.++|||+++|+|+|+|+.|+|+.+|++|+|.++++|||..+..
T Consensus         8 mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~   81 (87)
T d1wh3a_           8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKG   81 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred             EEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988764

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=2.9e-21  Score=123.57  Aligned_cols=73  Identities=62%  Similarity=0.943  Sum_probs=70.9

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      |.|+|++.+|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999985

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.7e-21  Score=123.56  Aligned_cols=75  Identities=33%  Similarity=0.535  Sum_probs=72.3

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      ..|.|+|++.+|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            358899999999999999999999999999999999999999999999999999999999999999999999985

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.7e-21  Score=123.55  Aligned_cols=73  Identities=37%  Similarity=0.647  Sum_probs=69.9

Q ss_pred             CEEEEEccCCc-EEEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++++|+ +++++ +++++||++||++|+.+.|+|+++|+|+|+|+.|+|+.+|++|||.+++++|++++.
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            89999999996 89886 999999999999999999999999999999999999999999999999999999874

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.7e-21  Score=123.58  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=70.0

Q ss_pred             CEEEEEccCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++++| +++++ ++++++||++||.+|+.++|+|+++|+|+|+|+.|+|+.+|++|||.+++++|++++|
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            8999999999 57887 5999999999999999999999999999999999999999999999999999999886

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2e-21  Score=124.17  Aligned_cols=72  Identities=35%  Similarity=0.613  Sum_probs=69.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+||+.+|++++++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+| +++++||+.+.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            8999999999999999999999999999999999999999999999999999999999999 57899998764

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.9e-21  Score=123.10  Aligned_cols=74  Identities=28%  Similarity=0.525  Sum_probs=71.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+||+.+|++++++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||.++++|||+++.+
T Consensus         4 ~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999988653

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.2e-20  Score=120.32  Aligned_cols=70  Identities=23%  Similarity=0.437  Sum_probs=68.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~   70 (230)
                      |+|+|+...|+.+.++|++++||++||++|+.++|+||++|+|+|+|+.|+|+.+|++|||.+|++++|.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999999999999999999999999999999999986

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.1e-20  Score=118.16  Aligned_cols=73  Identities=37%  Similarity=0.647  Sum_probs=69.2

Q ss_pred             eeEEEEeccCc-eeEEE-eeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          153 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~i~-v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      |.|+|++.+|+ ++++. +++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            67999999996 78885 889999999999999999999999999999999999999999999999999999986

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=3.1e-20  Score=118.41  Aligned_cols=71  Identities=23%  Similarity=0.431  Sum_probs=68.8

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      +.|+|+...|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999875

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.7e-20  Score=118.81  Aligned_cols=76  Identities=28%  Similarity=0.493  Sum_probs=72.4

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      .+.|+|+..+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++...
T Consensus         3 e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p~   78 (80)
T d1ttna1           3 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV   78 (80)
T ss_dssp             SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             eEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999987543

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.3e-20  Score=117.12  Aligned_cols=71  Identities=34%  Similarity=0.455  Sum_probs=68.7

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe--ccccccCCccccccccccccceeeeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      +|+||+++|+.++++|++++||.+||++|+..+|+||++|+|+|  .|+.|.|+.+|++|||.+|++++|+++
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEE
Confidence            68999999999999999999999999999999999999999999  599999999999999999999999875

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-19  Score=121.82  Aligned_cols=73  Identities=32%  Similarity=0.618  Sum_probs=70.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+||+++|++|+++|++++||++||++|+++.|   +|+++|+|+|+|+.|+|+.+|++|||.++++|+++++.
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~   76 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECC
Confidence            99999999999999999999999999999999876   89999999999999999999999999999999998764

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-19  Score=119.18  Aligned_cols=68  Identities=31%  Similarity=0.646  Sum_probs=66.2

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      .+|+.+.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.|+||
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999987

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-19  Score=116.32  Aligned_cols=73  Identities=33%  Similarity=0.428  Sum_probs=69.4

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE--cCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~--~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      +.|+|+..+|+.++++|++++||.+||++|+.+.|+|+++|+|+|  +|+.|+|+.+|++|||++|++|+|+++.
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEEC
Confidence            368899999999999999999999999999999999999999999  6999999999999999999999999874

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-19  Score=115.31  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=68.6

Q ss_pred             eeEEEEeccC-ceeEE-EeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026940          153 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~-~~~~i-~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      |.|+|+..+| +++++ .+++++||++||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|.
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            6799999998 46777 5999999999999999999999999999999999999999999999999999999874

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.4e-20  Score=117.57  Aligned_cols=71  Identities=32%  Similarity=0.587  Sum_probs=68.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |.|+||+++|+++++++++++||++||++|+...|   +||++|+|+|+|+.|+|+.+|++|||.+++++++.+
T Consensus         3 ~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            78999999999999999999999999999999988   999999999999999999999999999999998865

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.5e-19  Score=115.28  Aligned_cols=71  Identities=34%  Similarity=0.558  Sum_probs=67.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|++. ++.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+|+++||+.+
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            68999975 678999999999999999999999999999999999999999999999999999999999754

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-19  Score=118.70  Aligned_cols=73  Identities=34%  Similarity=0.491  Sum_probs=69.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+ ..++++|++++||++||++|++.+|+||++|+|+|+|+.|+|+.+|++|||.+|++|+|+++..
T Consensus         8 i~I~Vkt~~-~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~   80 (84)
T d1yqba1           8 IKVTVKTPK-DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ   80 (84)
T ss_dssp             EEEEEECSS-CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred             EEEEEEcCC-CcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCC
Confidence            689999975 5689999999999999999999999999999999999999999999999999999999998764

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=4.2e-19  Score=113.20  Aligned_cols=71  Identities=34%  Similarity=0.574  Sum_probs=66.3

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      |+|.|++ .+++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus         2 i~I~Vk~-~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEe-CCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            5788885 4567999999999999999999999999999999999999999999999999999999999875

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.3e-20  Score=116.25  Aligned_cols=72  Identities=35%  Similarity=0.613  Sum_probs=68.2

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEe
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~  149 (230)
                      |+|+|++.+|+.+.++|++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+| ++++||++.+.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            6899999999999999999999999999999999999999999999999999999999999 57899987654

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.77  E-value=2.4e-19  Score=122.93  Aligned_cols=70  Identities=33%  Similarity=0.484  Sum_probs=67.1

Q ss_pred             ccCceeEEEeec-cccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          160 LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       160 ~~~~~~~i~v~~-~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      .+|++++++|.+ ++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|+|||.
T Consensus        38 ~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG~  108 (111)
T d1we6a_          38 NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSGP  108 (111)
T ss_dssp             SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCSS
T ss_pred             CCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCCC
Confidence            358999999986 8999999999999999999999999999999999999999999999999999999994

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.4e-19  Score=120.45  Aligned_cols=72  Identities=22%  Similarity=0.326  Sum_probs=69.2

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      +.|.|++..|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++
T Consensus        29 i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEEC
Confidence            688999999999999999999999999999999999999999999999999999999999999999999753

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.9e-19  Score=114.60  Aligned_cols=72  Identities=32%  Similarity=0.581  Sum_probs=68.5

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccC---CCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~---~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  223 (230)
                      .|+|+|++.+|++++++|++++||++||++|+++.|   +|+++|+|+|+|+.|+|+++|++|||++|++|.+++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            478999999999999999999999999999999887   899999999999999999999999999999998875

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.6e-19  Score=120.34  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      |+|+|+...|+.+.++|+|++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|..
T Consensus        29 i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999874

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.3e-19  Score=114.63  Aligned_cols=77  Identities=32%  Similarity=0.435  Sum_probs=70.6

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg~  229 (230)
                      .|.|+|++.+ .++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|....+
T Consensus         7 ~i~I~Vkt~~-~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~~a   83 (84)
T d1yqba1           7 LIKVTVKTPK-DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA   83 (84)
T ss_dssp             EEEEEEECSS-CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred             EEEEEEEcCC-CcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCCCC
Confidence            3788888764 4689999999999999999999999999999999999999999999999999999999999976543

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-18  Score=116.77  Aligned_cols=75  Identities=31%  Similarity=0.593  Sum_probs=70.3

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccC---CCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~---~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      |.|+|++.+|+++.++|++++||.+||++|+++.|   +|+++|+|+|+|+.|+|+.+|++|||++|++|+++++...
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCC
Confidence            67999999999999999999999999999999876   8999999999999999999999999999999999987543

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-18  Score=117.23  Aligned_cols=71  Identities=32%  Similarity=0.437  Sum_probs=67.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|++.++ .++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+.+|++|||.+|++|||+++
T Consensus        33 i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          33 IKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             EEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             EEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            6899999764 6899999999999999999999999999999999999999999999999999999999874

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.2e-18  Score=113.83  Aligned_cols=71  Identities=28%  Similarity=0.373  Sum_probs=67.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|++.+ ..+++++++++||.+||++|+..+|+|+++|+|+|+|+.|.|+.+|++|||.+|++|+|+++
T Consensus        11 i~v~Vk~~~-~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1          11 IRVSVKTPQ-DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             EEEEEECSS-SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             EEEEEEcCC-CcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            689999975 56799999999999999999999999999999999999999999999999999999999876

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.3e-18  Score=115.28  Aligned_cols=72  Identities=32%  Similarity=0.410  Sum_probs=67.1

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .|.|+|++.++ .++++|++++||.+||++|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|
T Consensus        32 ~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          32 IIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             eEEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            37888887654 5799999999999999999999999999999999999999999999999999999999986

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2e-18  Score=116.71  Aligned_cols=78  Identities=23%  Similarity=0.434  Sum_probs=70.1

Q ss_pred             cceeEEE----EeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecC-CCCcccccCCCCCCEEEEEEEe
Q 026940          151 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       151 ~~~~i~v----~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      .+|.|+|    +...+.+++++|++++||.+||+.|+.++|+|+++|+|+|+|+.|. |+++|++|||++|++|+|+.|.
T Consensus         6 ~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~   85 (102)
T d1v5oa_           6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECC
Confidence            4678888    4456889999999999999999999999999999999999999994 6789999999999999998886


Q ss_pred             cCC
Q 026940          226 RGG  228 (230)
Q Consensus       226 ~gg  228 (230)
                      .++
T Consensus        86 ~~~   88 (102)
T d1v5oa_          86 NVG   88 (102)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2.5e-18  Score=116.26  Aligned_cols=74  Identities=22%  Similarity=0.412  Sum_probs=68.3

Q ss_pred             CEEEE----EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccccc-CCccccccccccccceeeeeeec
Q 026940            1 MQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v----~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~-d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |.|+|    +..+|.+|+++|++++||.+||++|+.++|+|+++|+|+|+|+.|. |..+|++|||.+|++|+|+.+..
T Consensus         8 m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~~   86 (102)
T d1v5oa_           8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN   86 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred             EEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECCC
Confidence            78898    6777999999999999999999999999999999999999999995 56799999999999999987653

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.7e-18  Score=113.08  Aligned_cols=73  Identities=27%  Similarity=0.338  Sum_probs=67.3

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..|.|+|+..+ ..+++++++++||.+||+.|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|
T Consensus         9 ~~i~v~Vk~~~-~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           9 RIIRVSVKTPQ-DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             CEEEEEEECSS-SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             CeEEEEEEcCC-CcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            34788999755 55789999999999999999999999999999999999999999999999999999999876

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.9e-18  Score=111.31  Aligned_cols=67  Identities=30%  Similarity=0.623  Sum_probs=64.4

Q ss_pred             cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeec
Q 026940            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      ++|++++++|++++||++||++|+.++|+|+++|+|+|+|+.|.|+.+|++|||.+|++|||.++.+
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~R   85 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKER   85 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecC
Confidence            5799999999999999999999999999999999999999999999999999999999999998753

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=9.8e-19  Score=119.05  Aligned_cols=74  Identities=23%  Similarity=0.416  Sum_probs=69.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE---------------EEeccccccCC-ccccccccccc
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIFAGKQLEDG-RTLADYNIQKE   64 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~---------------l~~~g~~l~d~-~tl~~~~i~~~   64 (230)
                      |.|+|++.+|+.++++|++++||++||++|++.+|+|+++|+               |+|+|+.|.|+ .+|++|||.++
T Consensus         8 M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g   87 (105)
T d1v2ya_           8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCC
Confidence            789999999999999999999999999999999999999998               99999999765 69999999999


Q ss_pred             cceeeeeeec
Q 026940           65 STLHLVLRLR   74 (230)
Q Consensus        65 ~~i~l~~~~~   74 (230)
                      ++|||+.+++
T Consensus        88 ~~l~lv~r~~   97 (105)
T d1v2ya_          88 DEVSFIKKLG   97 (105)
T ss_dssp             EEEEEEECSC
T ss_pred             CEEEEEEecC
Confidence            9999988763

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=2.3e-17  Score=110.01  Aligned_cols=74  Identities=26%  Similarity=0.447  Sum_probs=68.3

Q ss_pred             CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhh-----hCCC--CCceEEEeccccccCCcccccccccccc------c
Q 026940            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES------T   66 (230)
Q Consensus         1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~gi~--~~~q~l~~~g~~l~d~~tl~~~~i~~~~------~   66 (230)
                      |.|+|++.+|+.+ ++.+++++||.+||++|++.     .|+|  +++|+|+|.|+.|+|+.||++|++..|+      +
T Consensus         8 i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~~t   87 (101)
T d1se9a_           8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   87 (101)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCceE
Confidence            6899999999976 79999999999999999875     7898  7899999999999999999999999997      8


Q ss_pred             eeeeeeec
Q 026940           67 LHLVLRLR   74 (230)
Q Consensus        67 i~l~~~~~   74 (230)
                      +||+++++
T Consensus        88 mHlVvrpp   95 (101)
T d1se9a_          88 MHVIIQAP   95 (101)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeCCC
Confidence            99998874

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.3e-18  Score=117.21  Aligned_cols=76  Identities=24%  Similarity=0.436  Sum_probs=71.3

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceE---------------EEEcCeecCCC-CcccccCCC
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIFAGKQLEDG-RTLADYNIQ  214 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~---------------L~~~g~~L~d~-~tL~~~~i~  214 (230)
                      .+|.|+|+..+|+.++++|++++||++||++|++..++|+++|+               |+|+|+.|.|+ .+|.+|||+
T Consensus         6 s~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~   85 (105)
T d1v2ya_           6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCC
Confidence            57899999999999999999999999999999999999999987               99999999654 699999999


Q ss_pred             CCCEEEEEEEec
Q 026940          215 KESTLHLVLRLR  226 (230)
Q Consensus       215 ~~~~i~l~~~~~  226 (230)
                      +|++|+|+.|++
T Consensus        86 ~g~~l~lv~r~~   97 (105)
T d1v2ya_          86 NRDEVSFIKKLG   97 (105)
T ss_dssp             SSEEEEEEECSC
T ss_pred             CCCEEEEEEecC
Confidence            999999999875

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=6.8e-17  Score=107.49  Aligned_cols=76  Identities=25%  Similarity=0.363  Sum_probs=69.0

Q ss_pred             ecceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecC-CCCcccccCCCCCCEEEEEEEecCC
Q 026940          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..+|.|+|++.+|+.+.+++++++||.+||++|+.   +++++|+|+|+|+.|. |.++|++|+|.+|++|+++++..++
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~---~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~~   81 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFP---GQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA   81 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSS---STTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHhc---CCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCCC
Confidence            35799999999999999999999999999999874   5789999999999995 6789999999999999999887665

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.9e-17  Score=113.04  Aligned_cols=73  Identities=23%  Similarity=0.417  Sum_probs=67.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHh--------hhhhCCCCCceEEEeccccccCCccccccccccccc--eeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST--LHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i--------~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~--i~l~   70 (230)
                      |.|+|++++|+++.+.|++++||.+||++|        ++..|+||++|+|+|.|+.|.|+.+|++|+|.+|++  +||+
T Consensus        17 i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lhlv   96 (116)
T d1wgha_          17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEEEE
Confidence            579999999999999999999999999999        577899999999999999999999999999999987  5666


Q ss_pred             eee
Q 026940           71 LRL   73 (230)
Q Consensus        71 ~~~   73 (230)
                      ++.
T Consensus        97 ~r~   99 (116)
T d1wgha_          97 ARE   99 (116)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            553

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.8e-17  Score=110.94  Aligned_cols=72  Identities=18%  Similarity=0.256  Sum_probs=67.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.|.||..+++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||.+|++|+|+...
T Consensus         8 ~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t~   79 (96)
T d1wgga_           8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             EEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             eEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEeeC
Confidence            57999999888889999999999999999999999999999999999999986 7999999999999998654

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.2e-16  Score=110.00  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=68.3

Q ss_pred             ecceeEEEEeccCceeEEEeeccccHHHHHHHh--------ccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026940          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i--------~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l  221 (230)
                      ...+.|.++..+|+++.+.|++++||.+||++|        +++.++|+++|||+|.|+.|+|+.+|++|+|.+|+++.+
T Consensus        14 ~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~l   93 (116)
T d1wgha_          14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   93 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred             CCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEE
Confidence            345788888899999999999999999999999        567789999999999999999999999999999998555


Q ss_pred             EEEec
Q 026940          222 VLRLR  226 (230)
Q Consensus       222 ~~~~~  226 (230)
                      ++..+
T Consensus        94 hlv~r   98 (116)
T d1wgha_          94 HLVAR   98 (116)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            55444

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5e-17  Score=108.16  Aligned_cols=71  Identities=24%  Similarity=0.319  Sum_probs=65.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccccc-CCccccccccccccceeeeeeec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~-d~~tl~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+||+++|+.+.+++++++||.+||++|+   .+++++|+|+|+|+.|. |.++|++|+|.+|++||+.++.+
T Consensus         8 m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~   79 (95)
T d1wiaa_           8 INVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCC
Confidence            7999999999999999999999999999986   56889999999999996 56899999999999999987653

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=1.9e-17  Score=113.27  Aligned_cols=74  Identities=30%  Similarity=0.432  Sum_probs=67.3

Q ss_pred             EEEEEcc-CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeeecC
Q 026940            2 QIFVKTL-TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         2 ~v~v~~~-~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~~~   75 (230)
                      +|+|+.. +|++++++|.+ ++||.+||++|++++|+|+++|+|+|.|+.|.|+.||++|+|.++++|||.++.++
T Consensus        31 ~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rG  106 (111)
T d1we6a_          31 RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERS  106 (111)
T ss_dssp             EECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCC
T ss_pred             EEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCC
Confidence            3445444 58999999987 89999999999999999999999999999999999999999999999999998764

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.3e-17  Score=104.83  Aligned_cols=73  Identities=25%  Similarity=0.424  Sum_probs=65.1

Q ss_pred             ceeEEEEeccCceeEEEee-----ccccHHHHHHHhccccCCCCCceEEEEcCeecC-CCCcccccCCCCCCEEEEEEEe
Q 026940          152 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~-----~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      ||+|.|+ ..++.+++++.     +++||++||++|+..+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.|.
T Consensus         1 gi~i~V~-~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           1 GLTVTVT-HSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             SEEEEEE-CSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             CEEEEEE-ECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            5778886 57788898884     678999999999999999999999999999995 6789999999999999998764

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.9e-17  Score=109.88  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       160 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ..++++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|||+++++|+++.....+
T Consensus        27 ~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~~~~   95 (100)
T d1wjua_          27 KKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSS   95 (100)
T ss_dssp             CCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred             CCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcCCCC
Confidence            568999999999999999999999999999999999999999999999999999999999877654443

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=4.8e-17  Score=108.86  Aligned_cols=73  Identities=19%  Similarity=0.290  Sum_probs=67.0

Q ss_pred             cceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .++.|.|+..+++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..
T Consensus         6 ~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             CceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEee
Confidence            4578999987777788999999999999999999999999999999999999986 799999999999998743

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5e-17  Score=108.56  Aligned_cols=71  Identities=18%  Similarity=0.365  Sum_probs=65.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.|.|+ +++++|+++|++++||.+||++|++.+|+|+++|+|+|+|+ |.|+.+|++|+|.++++|+|+...
T Consensus        18 i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSS
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecC
Confidence            567786 57899999999999999999999999999999999999986 889999999999999999998654

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.66  E-value=3.3e-16  Score=104.33  Aligned_cols=76  Identities=25%  Similarity=0.433  Sum_probs=68.1

Q ss_pred             cceeEEEEeccCcee-EEEeeccccHHHHHHHhccc-----cCCC--CCceEEEEcCeecCCCCcccccCCCCCC-----
Q 026940          151 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES-----  217 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~-~i~v~~~~tV~~lK~~i~~~-----~~~~--~~~q~L~~~g~~L~d~~tL~~~~i~~~~-----  217 (230)
                      ..|.|.++..+|+.+ ++.+++++||.+||++|++.     .|+|  +++|||+|.|+.|+|++||++|+|.+|+     
T Consensus         6 ~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~   85 (101)
T d1se9a_           6 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV   85 (101)
T ss_dssp             CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred             ceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCc
Confidence            457889999999876 79999999999999999765     5787  7899999999999999999999999998     


Q ss_pred             -EEEEEEEec
Q 026940          218 -TLHLVLRLR  226 (230)
Q Consensus       218 -~i~l~~~~~  226 (230)
                       ++||++|..
T Consensus        86 ~tmHlVvrpp   95 (101)
T d1se9a_          86 TTMHVIIQAP   95 (101)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEeCCC
Confidence             999998854

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=3.8e-17  Score=109.17  Aligned_cols=74  Identities=19%  Similarity=0.371  Sum_probs=67.9

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      |.|.|+ +++++|+++|++++||.+||++|++.+|+|+++|+|+|+|+ |+|+.+|++|+|++|++|+|+....+|
T Consensus        18 i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~~~g   91 (95)
T d1v86a_          18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGSTISG   91 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSSCCC
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecCCCC
Confidence            567776 68899999999999999999999999999999999999996 889999999999999999998776655

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=9.4e-17  Score=106.33  Aligned_cols=72  Identities=21%  Similarity=0.412  Sum_probs=66.6

Q ss_pred             CEEEEEccCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCceEEE---eccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.|+||. +|+.+.+ ++++++||.+||++|+..+|+||++|+|+   |.|+.|+|+.+|++|+|.+|++|+|+..+
T Consensus         8 ~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             EEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeC
Confidence            7899996 5788887 79999999999999999999999999999   58999999999999999999999998765

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.8e-17  Score=108.68  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=66.6

Q ss_pred             CEEEE--EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCccccccccccccceeeeeee
Q 026940            1 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v--~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |+|++  +...|+.+++++.+++||.+||++|++.+|+|+.+|+|+|+|+.|+|+.||++|||.++++|++....
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~   92 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK   92 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcC
Confidence            45666  44679999999999999999999999999999999999999999999999999999999999876543

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.2e-16  Score=105.77  Aligned_cols=77  Identities=22%  Similarity=0.459  Sum_probs=69.3

Q ss_pred             cceeEEEEeccCceeEE-EeeccccHHHHHHHhccccCCCCCceEEE---EcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026940          151 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~i-~v~~~~tV~~lK~~i~~~~~~~~~~q~L~---~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  226 (230)
                      .+|+|+|+ ..++.+.+ ++++++||.+||++|++++|+|+++|+|+   |.|+.|+|+.+|.+|+|++|++|+|+.+..
T Consensus         6 ~~~~i~Vk-~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~~   84 (90)
T d1v5ta_           6 SGLPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE   84 (90)
T ss_dssp             CSCCEEEE-ETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred             CcEEEEEE-ECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeCC
Confidence            46889999 57777887 69999999999999999999999999999   689999999999999999999999987755


Q ss_pred             CC
Q 026940          227 GG  228 (230)
Q Consensus       227 gg  228 (230)
                      .|
T Consensus        85 ~~   86 (90)
T d1v5ta_          85 SG   86 (90)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.64  E-value=4.5e-16  Score=100.45  Aligned_cols=75  Identities=13%  Similarity=0.339  Sum_probs=70.0

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      ++|.|+. +++.+.+.+.+++++..|+++++++.|+++++++|+|+|+.|+++.|+++||+++|++|+++++++||
T Consensus         5 I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           5 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            4566653 67888899999999999999999999999999999999999999999999999999999999999998

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.3e-16  Score=102.10  Aligned_cols=72  Identities=24%  Similarity=0.409  Sum_probs=64.7

Q ss_pred             CEEEEEccCCcEEEEEe-----cCCCcHHHHHHHhhhhhCCCCCceEEEecccccc-CCccccccccccccceeeeeee
Q 026940            1 MQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v-----~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~-d~~tl~~~~i~~~~~i~l~~~~   73 (230)
                      |.|.|+. ++..+++++     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||.+|++++|..+.
T Consensus         2 i~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           2 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             EEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            6788865 579999998     4688999999999999999999999999999995 5689999999999999998764

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.7e-16  Score=103.99  Aligned_cols=64  Identities=28%  Similarity=0.440  Sum_probs=59.1

Q ss_pred             EEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCcccccccccccc
Q 026940            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES   65 (230)
Q Consensus         2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~tl~~~~i~~~~   65 (230)
                      +|||+...|+ ++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|++||++|||.+++
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~   65 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQT   65 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTT
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCccc
Confidence            4788877665 788999999999999999999999999999999999999999999999998776

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=101.46  Aligned_cols=74  Identities=28%  Similarity=0.447  Sum_probs=65.2

Q ss_pred             CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCccccccccccc--cceeeeeeec
Q 026940            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~tl~~~~i~~~--~~i~l~~~~~   74 (230)
                      |+++|++.+++  .+.+++++++||.+||++|++..|  +|+++|+|+|+|+.|.|+.+|++|....+  .++||+.++.
T Consensus         8 i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~~~   87 (93)
T d1wgda_           8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             EEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEecCC
Confidence            78999999765  588999999999999999999965  99999999999999999999999976544  4899987653

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=102.21  Aligned_cols=74  Identities=27%  Similarity=0.401  Sum_probs=64.2

Q ss_pred             EEEEeccC-ceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCC-------CCEEEEEEEec
Q 026940          155 IFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLRLR  226 (230)
Q Consensus       155 i~v~~~~~-~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~-------~~~i~l~~~~~  226 (230)
                      |+++...+ .++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|||.+       .+++.+.++.+
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~~~   81 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAD   81 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEEET
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEecC
Confidence            44554444 57889999999999999999999999999999999999999999999999954       45888888877


Q ss_pred             CC
Q 026940          227 GG  228 (230)
Q Consensus       227 gg  228 (230)
                      |+
T Consensus        82 ~~   83 (103)
T d2c9wb1          82 DT   83 (103)
T ss_dssp             TE
T ss_pred             CC
Confidence            65

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-15  Score=100.78  Aligned_cols=78  Identities=29%  Similarity=0.477  Sum_probs=67.6

Q ss_pred             cceeEEEEeccCc--eeEEEeeccccHHHHHHHhccccC--CCCCceEEEEcCeecCCCCcccccCCC--CCCEEEEEEE
Q 026940          151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~--~~~i~v~~~~tV~~lK~~i~~~~~--~~~~~q~L~~~g~~L~d~~tL~~~~i~--~~~~i~l~~~  224 (230)
                      .+|.++|++.+++  .+.+++++++||.+||++|++..+  +|+++|||+|+|+.|+|+.+|++|+.+  ++.+|||+.+
T Consensus         6 ~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             CcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEec
Confidence            3578889988765  478888999999999999999975  899999999999999999999999765  4559999998


Q ss_pred             ecCC
Q 026940          225 LRGG  228 (230)
Q Consensus       225 ~~gg  228 (230)
                      .+.+
T Consensus        86 ~~~~   89 (93)
T d1wgda_          86 VKSG   89 (93)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7765

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=5.4e-15  Score=98.35  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             CEEEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc-------cccCCccccccccccccceeeeee
Q 026940            1 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~-------~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      |.|+|++. ++..+..++++++||.+||++|+..+|+||++|+|.|.|+       .++|+.+|++|++.+|++||++.+
T Consensus         8 v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~   87 (95)
T d1v6ea_           8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeC
Confidence            57899884 5667889999999999999999999999999999999876       578899999999999999999876


Q ss_pred             ec
Q 026940           73 LR   74 (230)
Q Consensus        73 ~~   74 (230)
                      .+
T Consensus        88 ~p   89 (95)
T d1v6ea_          88 SG   89 (95)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=6.4e-15  Score=97.99  Aligned_cols=78  Identities=19%  Similarity=0.285  Sum_probs=68.0

Q ss_pred             cceeEEEEec-cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCe-------ecCCCCcccccCCCCCCEEEEE
Q 026940          151 GGMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       151 ~~~~i~v~~~-~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~-------~L~d~~tL~~~~i~~~~~i~l~  222 (230)
                      .++.|+|++. ++..++..+++++||.+||++|+..+|+|+++|+|+|.|+       .++|+++|.+|+|.+|++|||+
T Consensus         6 s~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlv   85 (95)
T d1v6ea_           6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             CcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEE
Confidence            4577888863 4556888999999999999999999999999999998776       5789999999999999999999


Q ss_pred             EEecCC
Q 026940          223 LRLRGG  228 (230)
Q Consensus       223 ~~~~gg  228 (230)
                      -+...|
T Consensus        86 d~~p~~   91 (95)
T d1v6ea_          86 DHSGSG   91 (95)
T ss_dssp             CCSCCS
T ss_pred             eCCCCC
Confidence            876554

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.2e-14  Score=89.68  Aligned_cols=75  Identities=17%  Similarity=0.425  Sum_probs=71.7

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~g  227 (230)
                      +.|.|++.+|+.+.+.|.+++++..|+.+.+++.|+|+++++|+|+|+.|.++.|++++++++|++|.++.++.|
T Consensus         3 I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            678888899999999999999999999999999999999999999999999999999999999999999998776

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.5e-14  Score=93.86  Aligned_cols=84  Identities=27%  Similarity=0.388  Sum_probs=64.1

Q ss_pred             CceEEEEEeecc---eeEEEEeccCceeEEEeeccccHHHHHHHhccccC--CC-CCceEEEEcCeecCCCCcccccCCC
Q 026940          141 STLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IP-PDQQRLIFAGKQLEDGRTLADYNIQ  214 (230)
Q Consensus       141 ~~i~l~~~~~~~---~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~--~~-~~~q~L~~~g~~L~d~~tL~~~~i~  214 (230)
                      +..|+.++...+   ....++..+. .....+..+.||.+||+.|+++..  +| |++|+|+|+|+.|+|+.+|++|||+
T Consensus         4 s~~~~~~~l~~~p~~pk~~i~~p~~-~~~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~   82 (94)
T d1x1ma1           4 SDWHLAVKLADQPLAPKSILQLPET-ELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ   82 (94)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCC-SSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred             ccceEEEEEccCCCCCcceEECCCC-ccCccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCC
Confidence            566777776544   3444544432 222234557899999999998864  44 6899999999999999999999999


Q ss_pred             CCCEEEEEEEe
Q 026940          215 KESTLHLVLRL  225 (230)
Q Consensus       215 ~~~~i~l~~~~  225 (230)
                      +|++|+++.|-
T Consensus        83 ~gstihLV~r~   93 (94)
T d1x1ma1          83 PGSTVHVLRKS   93 (94)
T ss_dssp             TTCEEEEEESS
T ss_pred             CCCEEEEEEeC
Confidence            99999999873

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.46  E-value=6.6e-14  Score=90.04  Aligned_cols=76  Identities=13%  Similarity=0.329  Sum_probs=69.2

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEeecc
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~  152 (230)
                      .+.|.|+. +|..+.+.+..++++..|++.++++.+++++.++|+|+|+.|.++.|+++|++.+|++|+++++..+|
T Consensus         4 ~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           4 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            35666654 67778899999999999999999999999999999999999999999999999999999999987765

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.3e-13  Score=90.80  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=56.1

Q ss_pred             cCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCe-------ec-CCCCcccccCCCCCCEEEEE
Q 026940          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QL-EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       161 ~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~-------~L-~d~~tL~~~~i~~~~~i~l~  222 (230)
                      +++.+++++++++||.+||.+|+..+|+|++.|+|+|.|+       .| +|+++|.+|||++|++|++.
T Consensus        21 ~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~   90 (97)
T d1wjna_          21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEE
Confidence            4678899999999999999999999999999999999885       35 47899999999999999874

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=3.5e-13  Score=89.91  Aligned_cols=69  Identities=19%  Similarity=0.273  Sum_probs=60.1

Q ss_pred             EEEEEcc---CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccc-------cc-CCccccccccccccceeee
Q 026940            2 QIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE-DGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~-------l~-d~~tl~~~~i~~~~~i~l~   70 (230)
                      .|.|+..   +++.+++++++++||.+||.+|+..+|+|+++|+|+|.|+.       |+ |+.+|.+|||.+|++|++.
T Consensus        11 ti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~   90 (97)
T d1wjna_          11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEE
Confidence            4556643   47889999999999999999999999999999999998863       44 6799999999999999975

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.2e-13  Score=87.91  Aligned_cols=84  Identities=27%  Similarity=0.385  Sum_probs=63.8

Q ss_pred             ccceeeeeeecCc---eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--CC-CCCcEEEecCcccCCCccHhhhcc
Q 026940           64 ESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IP-PDQQRLIFAGKQLEDGRTLADYNI  137 (230)
Q Consensus        64 ~~~i~l~~~~~~~---~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i~-~~~q~L~~~g~~L~d~~tL~~~~i  137 (230)
                      .|++|+.++..+.   -...++..+. .....+..+.||.+||+.|+.+..  +| |++|+|+|+|+.|+|+.+|++|+|
T Consensus         3 ~s~~~~~~~l~~~p~~pk~~i~~p~~-~~~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I   81 (94)
T d1x1ma1           3 LSDWHLAVKLADQPLAPKSILQLPET-ELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGI   81 (94)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCC-SSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTC
T ss_pred             cccceEEEEEccCCCCCcceEECCCC-ccCccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCC
Confidence            3567777776543   2344444432 223334567899999999998864  44 689999999999999999999999


Q ss_pred             ccCCceEEEEE
Q 026940          138 QKESTLHLVLR  148 (230)
Q Consensus       138 ~~~~~i~l~~~  148 (230)
                      ++|++||++.|
T Consensus        82 ~~gstihLV~r   92 (94)
T d1x1ma1          82 QPGSTVHVLRK   92 (94)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCEEEEEEe
Confidence            99999999865

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.6e-13  Score=84.49  Aligned_cols=75  Identities=16%  Similarity=0.378  Sum_probs=70.9

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEEEee
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~  150 (230)
                      .+.|.|+..+|+.+.+.|..++++..|+..++++.+++++.++|+|+|+.|.++.|++++++.+|++|+++++..
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~   76 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   76 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            467889999999999999999999999999999999999999999999999999999999999999999987654

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.34  E-value=2.4e-12  Score=84.53  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=59.0

Q ss_pred             eEEEEe-ccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCe-------ecCCCCcccccCCCCCCEEEEEEEe
Q 026940          154 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       154 ~i~v~~-~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~-------~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      .+.|.+ ..+...+..++++.||.+||.+|+..+|+|++.|+|+|.|+       ..+|+++|.+|||.+|++|+++=+.
T Consensus         6 ~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~~   85 (90)
T d1t0ya_           6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT   85 (90)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred             EEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeCC
Confidence            344443 22334677789999999999999999999999999998775       4578999999999999999986553

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.34  E-value=2.2e-12  Score=84.64  Aligned_cols=71  Identities=15%  Similarity=0.221  Sum_probs=59.2

Q ss_pred             EEEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc-------cccCCccccccccccccceeeeee
Q 026940            2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         2 ~v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~-------~l~d~~tl~~~~i~~~~~i~l~~~   72 (230)
                      .+.|.+. .+..+...+++++||.+||.+|+..+|+||+.|+|+|.|+       ..+|+++|++||+.+|++||+.-.
T Consensus         6 ~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            3556543 2344677899999999999999999999999999998775       456789999999999999999643

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.2e-09  Score=66.17  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=65.4

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  222 (230)
                      ++|.|+..+|+.+.+.+..++++..|..+.+++.+++++..+|+|+|..+.++.|.+++++++|++|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            4577788889999999999999999999999999999999999999999999999999999999999874

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.4e-08  Score=63.26  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=65.6

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEE
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~  146 (230)
                      +.|.|+..+|+.+.+.+..+++...|....+++.+++++..+++|+|..+..+.|.+++++.+|+.|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            5677888899999999999999999999999999999999999999999999999999999999998763

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.75  E-value=1.6e-08  Score=64.19  Aligned_cols=70  Identities=21%  Similarity=0.255  Sum_probs=55.9

Q ss_pred             EEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceEEEecc--------------ccccC-Cccccccccccccc
Q 026940            3 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG--------------KQLED-GRTLADYNIQKEST   66 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~g--------------~~l~d-~~tl~~~~i~~~~~   66 (230)
                      |.|++.+ .+.-++|+ ++.||.+||++|++..++|.+.|+|..+-              ..|.| ..+|+++||.+|+.
T Consensus         3 iRiRsrd-G~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRD-GLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSS-CEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecC-CceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            6677776 46677885 47899999999999999999999997651              12444 46799999999999


Q ss_pred             eeeeeee
Q 026940           67 LHLVLRL   73 (230)
Q Consensus        67 i~l~~~~   73 (230)
                      +++....
T Consensus        82 vyL~y~~   88 (94)
T d1wf9a1          82 VYLAYEG   88 (94)
T ss_dssp             EECCCSS
T ss_pred             EEEEeee
Confidence            9987654

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.60  E-value=3.5e-08  Score=62.58  Aligned_cols=69  Identities=22%  Similarity=0.304  Sum_probs=54.3

Q ss_pred             EEEEeccCceeEEEee-ccccHHHHHHHhccccCCCCCceEEEEcC--------------eec-CCCCcccccCCCCCCE
Q 026940          155 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG--------------KQL-EDGRTLADYNIQKEST  218 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~-~~~tV~~lK~~i~~~~~~~~~~q~L~~~g--------------~~L-~d~~tL~~~~i~~~~~  218 (230)
                      |.+++.+| +..++++ ++.||.+||+.|++..++|.+.|.|..+.              ..| +|..+|+++||.+|+.
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            45565554 4567786 47899999999999999999999996531              234 4567899999999999


Q ss_pred             EEEEEE
Q 026940          219 LHLVLR  224 (230)
Q Consensus       219 i~l~~~  224 (230)
                      ||+...
T Consensus        82 vyL~y~   87 (94)
T d1wf9a1          82 VYLAYE   87 (94)
T ss_dssp             EECCCS
T ss_pred             EEEEee
Confidence            998654

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=1.4e-06  Score=53.44  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=65.5

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      |.|-..+|+..++.+.|++|+.++-+..++++|+.+++..|.|+++.++-+.++...|+.+|+.+.|+-.
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEEc
Confidence            5666789999999999999999999999999999999999999999999999999999999999998753

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=5e-06  Score=50.92  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=64.5

Q ss_pred             eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecCcccCCCccHhhhccccCCceEEEE
Q 026940           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~  147 (230)
                      |.|-+.+|+...+.+.|++|+.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+.+.++-
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            556678999999999999999999999999999999999999999999999999999999999998763

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00014  Score=45.60  Aligned_cols=69  Identities=20%  Similarity=0.380  Sum_probs=58.7

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L---~d~~tL~~~~i~~~~~i~l~  222 (230)
                      ..|.++.++|+.+.-.+..++|+.+|..-|... +.++..+.|.  |..+.+   ++++||++.|+-+.++|++-
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            468888899999999999999999999999874 6777788887  677777   35789999999999998764

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00042  Score=43.30  Aligned_cols=68  Identities=18%  Similarity=0.335  Sum_probs=55.8

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe--ccccc---cCCccccccccccccceeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL---EDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l---~d~~tl~~~~i~~~~~i~l~   70 (230)
                      +|-|+..+|..+.-.+.+++||.+|.+.|.. .+.++....|.-  -.+.+   +.+.||.+.|+.+.+++++-
T Consensus         7 ~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           7 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            5789999999999999999999999999987 477777666663  34555   34689999999988887764

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=0.0004  Score=44.13  Aligned_cols=66  Identities=20%  Similarity=0.384  Sum_probs=53.5

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhcccc-CCCCCceEEE--EcCeec-CCCCcccccCCCCCCEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL  219 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~-~~~~~~q~L~--~~g~~L-~d~~tL~~~~i~~~~~i  219 (230)
                      ..|.++.++|+.+...+..++||.++..-+.... +.+...+.|.  |..+.+ +++.||.+.|+.+. .|
T Consensus        15 t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s-~v   84 (89)
T d1i42a_          15 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA-VI   84 (89)
T ss_dssp             EEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS-EE
T ss_pred             EEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc-eE
Confidence            3577888999999999999999999999997754 5666778887  456777 56789999999864 44

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.0014  Score=42.16  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=56.3

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeec--CCCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--EDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L--~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      ..|.++..+|+.+.-.+..++||.+|..-+... +......+|.  |..+.+  +.++||.+.|+.+..+|++--+
T Consensus        17 ~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~   91 (96)
T d2cr5a1          17 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   91 (96)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecC
Confidence            567788889999999999999999999998765 4556667776  555666  3468999999999998876543

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00097  Score=45.07  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=56.6

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~--~~g~~L---~d~~tL~~~~i~~~~~i~l~  222 (230)
                      ..|.++..+|+.+...+..++||.+|..-|... +.....+.|.  |..+.|   +.++||.+.|+-+..+|++-
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            467788889999999999999999999999765 4566777776  666777   35789999999999998654

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.0013  Score=41.62  Aligned_cols=66  Identities=18%  Similarity=0.299  Sum_probs=53.6

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHh-CCCCCCcEEEe--cCcccC-CCccHhhhccccCC
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF--AGKQLE-DGRTLADYNIQKES  141 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~~--~g~~L~-d~~tL~~~~i~~~~  141 (230)
                      ...|.|+.++|..+...++.++||.+|..-+.... +.+.....|..  ..+.+. ++.||.++|+.+..
T Consensus        14 ~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~   83 (89)
T d1i42a_          14 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV   83 (89)
T ss_dssp             CEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCSE
T ss_pred             cEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCce
Confidence            45788899999999999999999999999998764 56667788874  456674 47899999998643

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.004  Score=41.87  Aligned_cols=69  Identities=19%  Similarity=0.344  Sum_probs=54.3

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--eccccc---cCCccccccccccccceeeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l---~d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +|-|+..+|+.+.-.+..++||.+|...|... +.+...-.|+  |--+.+   +...||.+.|+.+..+|++--
T Consensus        45 ~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee  118 (124)
T d1wj4a_          45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEe
Confidence            57889999999999999999999999999876 4455455555  334555   346899999999988887653

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.0041  Score=39.77  Aligned_cols=69  Identities=16%  Similarity=0.167  Sum_probs=53.4

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec--ccccc--CCccccccccccccceeeee
Q 026940            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--DGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g~~l~--d~~tl~~~~i~~~~~i~l~~   71 (230)
                      +|-|+..+|..+.-.+..++||.+|...|.... ..+..-.|+..  .+.+.  .+.||.++|+.+...+++.-
T Consensus        18 ~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~-~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~   90 (96)
T d2cr5a1          18 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   90 (96)
T ss_dssp             EEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCcccHHHHHHHHHHhc-cCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEec
Confidence            578999999999999999999999999997654 44455555532  34443  36899999999888877643

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.15  Score=31.26  Aligned_cols=71  Identities=15%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCC-CceEEEEcC-----eecCCCCcccccCCCCCCEEEEEEE
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~-~~q~L~~~g-----~~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      +++.|...++ ++.+.++..++..+|=.++++..++.. +-.=|.|-+     .=|+.++.|..+..+.+....+.++
T Consensus         2 ~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~F~   78 (84)
T d1ef1a3           2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR   78 (84)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred             EEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEEEE
Confidence            5678888887 489999999999999999999999754 445566532     2367889999887776665555544

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.32  Score=29.65  Aligned_cols=68  Identities=15%  Similarity=0.252  Sum_probs=51.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceEEEecccc-----ccCCccccccccccccceee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ-----LEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~~g~~-----l~d~~tl~~~~i~~~~~i~l   69 (230)
                      |+|.|.++++ .+.+++++.++..+|=+.|.+..|+.. +.--|.|....     |+.++.|..+..+.+..+.+
T Consensus         2 ~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l   75 (84)
T d1ef1a3           2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF   75 (84)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred             EEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEE
Confidence            6789999987 589999999999999999999999875 33355554221     67778888876655544333

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.04  E-value=0.49  Score=28.78  Aligned_cols=65  Identities=11%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             eeEEEEecc------C-ceeEEEeeccccHHHHHHHhccccCC-----------CCCceEEEEcCeecCCCCcccccCCC
Q 026940          153 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQ  214 (230)
Q Consensus       153 ~~i~v~~~~------~-~~~~i~v~~~~tV~~lK~~i~~~~~~-----------~~~~q~L~~~g~~L~d~~tL~~~~i~  214 (230)
                      |+|.|+...      | ....++++...||.+|.+.+.++++-           .....++..+|+..++     ++-++
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCcC
Confidence            566666532      3 46778898999999999999887631           1233455567766554     34588


Q ss_pred             CCCEEEEE
Q 026940          215 KESTLHLV  222 (230)
Q Consensus       215 ~~~~i~l~  222 (230)
                      +||.|-++
T Consensus        77 ~gDevai~   84 (88)
T d1vjka_          77 DGDVVGVF   84 (88)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEe
Confidence            99998765

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.94  E-value=0.14  Score=31.50  Aligned_cols=66  Identities=9%  Similarity=0.195  Sum_probs=46.0

Q ss_pred             CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhCCC-----------CCceEEEeccccccCCccccccccc
Q 026940            1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEGIP-----------PDQQRLIFAGKQLEDGRTLADYNIQ   62 (230)
Q Consensus         1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~gi~-----------~~~q~l~~~g~~l~d~~tl~~~~i~   62 (230)
                      |+|.|+...      | ....++++.+.||.+|.+.+..+++-.           ...-++..||+..+++     +-+.
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d-----~~L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWD-----EELK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTT-----CBCC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCC-----cCcC
Confidence            788888886      4 577899999999999999998876421           1223455666665443     4467


Q ss_pred             cccceeeee
Q 026940           63 KESTLHLVL   71 (230)
Q Consensus        63 ~~~~i~l~~   71 (230)
                      +|+.+.+..
T Consensus        77 ~gDevai~P   85 (88)
T d1vjka_          77 DGDVVGVFP   85 (88)
T ss_dssp             TTCEEEEES
T ss_pred             CCCEEEEeC
Confidence            777777653

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.89  Score=27.55  Aligned_cols=72  Identities=11%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             eeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCc-eEEEE--cC--eecCCCCcccccCCCCCCEEEEEEEe
Q 026940          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AG--KQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~-q~L~~--~g--~~L~d~~tL~~~~i~~~~~i~l~~~~  225 (230)
                      +.+.|...+++ .+++++..++-.+|=.+|++..++.... .=|.|  +|  .=|+.+++|..+.++.+..+.+.++.
T Consensus         3 ~~v~V~lLD~~-le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~~F~V   79 (84)
T d1h4ra3           3 FTVRIVTMDAE-MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA   79 (84)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred             EEEEEEEcCCc-EEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecCCceEEccCCCchhhhccCCCCCEEEEEEE
Confidence            46778888875 7899999999999999999999975433 34444  33  23577889999887777766665553

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.99  E-value=0.21  Score=30.23  Aligned_cols=37  Identities=11%  Similarity=0.238  Sum_probs=34.2

Q ss_pred             CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEec
Q 026940           86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA  122 (230)
Q Consensus        86 g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~  122 (230)
                      .-++.+.+.+....++|.++|+++...+++..+|.|.
T Consensus        13 ~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_          13 KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             EEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            3578889999999999999999999999999999996

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.3  Score=29.50  Aligned_cols=46  Identities=13%  Similarity=0.209  Sum_probs=39.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~   46 (230)
                      |...||..=--++.+++.++.+..+|.+.|.+++..+++.-+|.|.
T Consensus         4 ~~~~vkVh~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_           4 MAYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SCEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             CCEEEEEEEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            3344555544789999999999999999999999999999999995

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.79  Score=26.26  Aligned_cols=57  Identities=12%  Similarity=0.186  Sum_probs=44.4

Q ss_pred             EEeeccccHHHHHHHhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026940          167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       167 i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~gg  228 (230)
                      +++++..|+.+|-+.    .++++....+..++..+.- ....++-+++||.|.++.-..||
T Consensus         9 ~~~~~~~tl~~ll~~----l~~~~~~vaV~vN~~ivpk-~~~~~~~L~~gD~ieIv~~v~GG   65 (65)
T d1zud21           9 MQCAAGQTVHELLEQ----LDQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQVIAGG   65 (65)
T ss_dssp             ECCCTTCBHHHHHHH----HTCCCTTEEEEETTEECCG-GGTTTCBCCTTCEEEEEECCCCC
T ss_pred             EEcCCCCcHHHHHHH----cCCCCCcEEEEECCEEcCH-HHHhhccCCCCCEEEEEEEecCC
Confidence            456777899988764    4677888888899988763 35777889999999988877776

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=0.43  Score=28.85  Aligned_cols=59  Identities=12%  Similarity=0.124  Sum_probs=44.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce-EEEec---cc--cccCCcccccc
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA---GK--QLEDGRTLADY   59 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~l~~~---g~--~l~d~~tl~~~   59 (230)
                      |...|..++|..+.+.+++.++..+|=++|.+..|+....- -|.|.   |.  =|+.++.+...
T Consensus         1 ~~C~V~lLD~~~~~~~v~~~~~G~~l~~~Vc~~l~l~E~~YFGL~y~d~~~~~~WLd~~K~i~kq   65 (81)
T d1gg3a3           1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ   65 (81)
T ss_dssp             CEEEEECTTSCEEEEECCTTCCHHHHHHHHHHHHTTCSCCSSSCEEECCSSSCCBCCTTSCHHHH
T ss_pred             CEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCcccccceEEEECCCCceEecccccchhhh
Confidence            78899999999999999999999999999999999876331 33332   21  15555666554

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=1.5  Score=26.53  Aligned_cols=68  Identities=12%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEecc----ccccCCccccccccccccceee
Q 026940            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG----KQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~g----~~l~d~~tl~~~~i~~~~~i~l   69 (230)
                      |.|.|..++| +..+++++.++-.+|=+.|.+..|+...+ --|.|..    .=|+.++.|..+.++.++.+.+
T Consensus         3 ~~v~V~lLD~-~le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~   75 (84)
T d1h4ra3           3 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTF   75 (84)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEE
T ss_pred             EEEEEEEcCC-cEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecCCceEEccCCCchhhhccCCCCCEEE
Confidence            4688999987 47999999999999999999999986532 2454432    1266677888776665555443

>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Rap guanine nucleotide exchange factor 5, RapGEF5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.9  Score=28.61  Aligned_cols=73  Identities=10%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE---ecCcc--cCCCccHhhhccccCCceEEEEE
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~--L~d~~tL~~~~i~~~~~i~l~~~  148 (230)
                      .+...|...+....++.+..+.|+.++++.++++.+.+.++..|.   .+|..  |+++..--.-.+.-++.+++..+
T Consensus         9 ei~~~VY~~Dhsy~tlr~~v~~sa~eI~~~vaeKl~~~~e~L~LV~V~SsGEr~~lkp~d~sV~TsL~lN~rLFvc~~   86 (104)
T d1wgya_           9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK   86 (104)
T ss_dssp             CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred             eEEEEEEecCCcEEEEEeeccCcHHHHHHHHHHHhCCCCCceEEEEEccCCcEEeeCccceeEEeeeeecceEEEech
Confidence            344556677888889999999999999999999999988887766   45543  44433222223445566655543

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.85  E-value=0.63  Score=28.32  Aligned_cols=42  Identities=14%  Similarity=0.164  Sum_probs=33.3

Q ss_pred             EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026940            3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~   46 (230)
                      |.||.. ++..+.+.++++.+..+|+++|..++++.+  .+|.|.
T Consensus        13 ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~~--~~lkY~   55 (85)
T d1ip9a_          13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTDN--FKLQTK   55 (85)
T ss_dssp             EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSC--EEEEEC
T ss_pred             EEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCCCc--eEEEEE
Confidence            445544 678999999999999999999999998653  455563

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.98  Score=26.57  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=38.3

Q ss_pred             eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe
Q 026940           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  121 (230)
Q Consensus        79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~  121 (230)
                      +.+..++|+.-.+.+.+..|+.++-.++.++.|+.++...++.
T Consensus         3 iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~   45 (73)
T d1wxma1           3 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR   45 (73)
T ss_dssp             EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            4556789999999999999999999999999999999888764

>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Rap guanine nucleotide exchange factor 5, RapGEF5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.20  E-value=1.4  Score=27.71  Aligned_cols=69  Identities=10%  Similarity=0.227  Sum_probs=49.0

Q ss_pred             EEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEE---EcCe--ecCCCCcccccCCCCCCEEEEEEE
Q 026940          156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       156 ~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~---~~g~--~L~d~~tL~~~~i~~~~~i~l~~~  224 (230)
                      .|...+....++.++-+.|+.++++.++++.+.+.+.+.|.   .+|.  .|+++..--.-.+.-++.+++..|
T Consensus        13 ~VY~~Dhsy~tlr~~v~~sa~eI~~~vaeKl~~~~e~L~LV~V~SsGEr~~lkp~d~sV~TsL~lN~rLFvc~~   86 (104)
T d1wgya_          13 HVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK   86 (104)
T ss_dssp             EEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred             EEEecCCcEEEEEeeccCcHHHHHHHHHHHhCCCCCceEEEEEccCCcEEeeCccceeEEeeeeecceEEEech
Confidence            44445566678889999999999999999999988888776   5663  344443322334567777776655

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.99  E-value=1  Score=26.45  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=38.5

Q ss_pred             EEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE
Q 026940          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  197 (230)
Q Consensus       155 i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~  197 (230)
                      +.+..++|+.-.+.+.+..|+.++-.++.++-|+.++...++.
T Consensus         3 iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~   45 (73)
T d1wxma1           3 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR   45 (73)
T ss_dssp             EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            5677789999999999999999999999999999999887763

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.94  E-value=1.1  Score=26.60  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             eEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCCceEEEE
Q 026940          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  197 (230)
Q Consensus       154 ~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~~q~L~~  197 (230)
                      .+.+..++|+.-.+.+.+..|+.++-.++.++-|++++...++.
T Consensus         3 ~iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~   46 (77)
T d1c1yb_           3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFR   46 (77)
T ss_dssp             EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             eEEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            46677889999999999999999999999999999999888763

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.65  E-value=1.2  Score=26.39  Aligned_cols=43  Identities=14%  Similarity=0.157  Sum_probs=38.3

Q ss_pred             eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEe
Q 026940           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  121 (230)
Q Consensus        79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~  121 (230)
                      +.+..++|+.-.+.+.+..|+.+.-.++.++.|++++...++.
T Consensus         4 iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~   46 (77)
T d1c1yb_           4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFR   46 (77)
T ss_dssp             EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             EEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            4556789999999999999999999999999999998888764

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.01  E-value=1.4  Score=26.33  Aligned_cols=59  Identities=12%  Similarity=0.119  Sum_probs=44.6

Q ss_pred             eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCC-cEEEec---C--cccCCCccHhhh
Q 026940           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADY  135 (230)
Q Consensus        77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~---g--~~L~d~~tL~~~  135 (230)
                      |+..|..++|..+.+.++..++..+|=+++++..++.... .=|.|-   |  .-|+.++++...
T Consensus         1 ~~C~V~lLD~~~~~~~v~~~~~G~~l~~~Vc~~l~l~E~~YFGL~y~d~~~~~~WLd~~K~i~kq   65 (81)
T d1gg3a3           1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ   65 (81)
T ss_dssp             CEEEEECTTSCEEEEECCTTCCHHHHHHHHHHHHTTCSCCSSSCEEECCSSSCCBCCTTSCHHHH
T ss_pred             CEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCcccccceEEEECCCCceEecccccchhhh
Confidence            4567888999999999999999999999999999976443 233332   2  235667777765

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.95  E-value=1.9  Score=26.04  Aligned_cols=45  Identities=13%  Similarity=0.120  Sum_probs=35.2

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEecC
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  123 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g  123 (230)
                      .++|++. .++..+.+.++++.+..+|+++|+.+++..  ..+|.|..
T Consensus        12 ~ikVKv~-~~~D~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~D   56 (85)
T d1ip9a_          12 TTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKL   56 (85)
T ss_dssp             CEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECC
T ss_pred             CEEEEEE-ECCcEEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEEc
Confidence            3555553 467788999999999999999999999754  57777754

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.71  E-value=1.3  Score=27.66  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             ceeEEEEeccCceeEEEeeccccHHHHHHHhccccCCCCC-ceEEE--Ec--C--eecCCCCccccc--CCCCCCEEEEE
Q 026940          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FA--G--KQLEDGRTLADY--NIQKESTLHLV  222 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~-~q~L~--~~--g--~~L~d~~tL~~~--~i~~~~~i~l~  222 (230)
                      +..|.|...+|.+..+.|++++|+.++-+.+.++.++..+ ..-|+  +.  |  +.|+|+..+-+.  .....+.-.++
T Consensus         9 ~~vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~~f~L~E~~~~~~leR~L~d~E~vl~v~~~W~~~~~~r~v   88 (100)
T d1wgra_           9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFV   88 (100)
T ss_dssp             CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEE
T ss_pred             ceEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCCCeEEEEecCCCcceeecCchHhHHHHHHcCCCCCCCEEE
Confidence            3456677788999999999999999999999999997543 34443  32  2  667665533332  12233444555


Q ss_pred             EE
Q 026940          223 LR  224 (230)
Q Consensus       223 ~~  224 (230)
                      +|
T Consensus        89 ~r   90 (100)
T d1wgra_          89 FR   90 (100)
T ss_dssp             EC
T ss_pred             Ee
Confidence            55

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.29  E-value=0.81  Score=28.71  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             cceeEEEEecc--------CceeEEEeec---cccHHHHHHHhccccCCCCCc-----------eEEEEcCeecCCCCcc
Q 026940          151 GGMQIFVKTLT--------GKTITLEVES---SDTIDNVKAKIQDKEGIPPDQ-----------QRLIFAGKQLEDGRTL  208 (230)
Q Consensus       151 ~~~~i~v~~~~--------~~~~~i~v~~---~~tV~~lK~~i~~~~~~~~~~-----------q~L~~~g~~L~d~~tL  208 (230)
                      .+|+|.|....        .+.+.++++.   ..||.+|-+.+.+++.-....           ..+..+|....   -+
T Consensus         3 ~~m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~---~l   79 (101)
T d1xo3a_           3 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LL   79 (101)
T ss_dssp             SSCEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHH---HH
T ss_pred             CCeEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCccee---cc
Confidence            45777777633        1345666653   469999999998887532111           22234443211   12


Q ss_pred             --cccCCCCCCEEEEEEEecCC
Q 026940          209 --ADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       209 --~~~~i~~~~~i~l~~~~~gg  228 (230)
                        .++-+++||.|.++--..||
T Consensus        80 ~gl~t~l~dgDeV~~~p~v~GG  101 (101)
T d1xo3a_          80 GELDYQLQDQDSILFISTLHGG  101 (101)
T ss_dssp             TTTSCCCCTTCEEEEEETTCCC
T ss_pred             CCCccCcCCCCEEEEeCCCCCC
Confidence              25679999999998887777

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.39  E-value=1.1  Score=27.98  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             CceeeEEEeccC--------eeEeeecC---CCChHHHHHHHHHhHhCCCCCC-----------cEEEecCcccCCCccH
Q 026940           75 GGMQIFVKTLTG--------KTITLEVE---SSDTIDNVKAKIQDKEGIPPDQ-----------QRLIFAGKQLEDGRTL  132 (230)
Q Consensus        75 ~~~~v~v~~~~g--------~~~~i~v~---~~~tV~~lK~~i~~~~~i~~~~-----------q~L~~~g~~L~d~~tL  132 (230)
                      .+|.|+|+..+|        +.+.++++   ...||.+|-+.+.+++.-....           ...+.+|...+   .+
T Consensus         3 ~~m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~---~l   79 (101)
T d1xo3a_           3 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LL   79 (101)
T ss_dssp             SSCEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHH---HH
T ss_pred             CCeEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCccee---cc
Confidence            356777765432        34455554   3579999999999887532111           12223333211   12


Q ss_pred             --hhhccccCCceEEEEEeec
Q 026940          133 --ADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus       133 --~~~~i~~~~~i~l~~~~~~  151 (230)
                        .++.+++|+.|.+.....+
T Consensus        80 ~gl~t~l~dgDeV~~~p~v~G  100 (101)
T d1xo3a_          80 GELDYQLQDQDSILFISTLHG  100 (101)
T ss_dssp             TTTSCCCCTTCEEEEEETTCC
T ss_pred             CCCccCcCCCCEEEEeCCCCC
Confidence              2566899999988755443

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.72  E-value=1.5  Score=27.36  Aligned_cols=41  Identities=17%  Similarity=0.158  Sum_probs=34.8

Q ss_pred             ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCC
Q 026940           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ  116 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~  116 (230)
                      +..|.|...+|....+.|++++|+.++-+.+.++.++....
T Consensus         9 ~~vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~   49 (100)
T d1wgra_           9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE   49 (100)
T ss_dssp             CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCC
Confidence            45566777899999999999999999999999999976543