Citrus Sinensis ID: 026948

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEcHHHHHHHHHHHHHHccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqgkvqlrsTTTTFLVVNTLMLTTPFKALAETceadnsffnmPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIesyapslsyapvgsripedevivdpkKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISeregeysgsteaYGAIADCYTELGDLERAARFYDKYISRLESD
Flexible Loop (DISEMBL)
mqgkvqlrsttTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIesyapslsyapvgsripedevivdpKKEELLSRLKtgknflrnQDLEKAFTEFKAALELAqnvkdpieekkaarglgaslqrqgKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Low Complexity Region (SEG)
MQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Disordered region (IsUnstruct)
*********TTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALR****I**************************************NFLRNQDLEKAFTEFKAALELA*************************YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI******
Disordered Region (DISOPRED)
*********TTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPED****DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE**
Disordered Region (DISEMBL)
********STTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Disordered Region (DISPRO)
*QGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRxxxxxxxxxxxxxxxxxxxxxxxxESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRxxxxxxxxxxxxxxxxxxxxxKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q940U6	316	Protein FLUORESCENT IN BL	no	no	1.0	0.727	0.744	1e-97
Q96AY4	2481	Tetratricopeptide repeat	yes	no	0.386	0.035	0.340	1e-08
Q80XJ3	1691	Tetratricopeptide repeat	yes	no	0.386	0.052	0.340	1e-08
P81274	684	G-protein-signaling modul	no	no	0.404	0.135	0.290	0.0007

>sp|Q940U6|FLU_ARATH Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana GN=FLU PE=1 SV=1

 Score =  355 bits (912), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 172/231 (74%), Positives = 202/231 (87%), Gaps = 1/231 (0%)

Query: 1   MQGKVQLRSTTTTFLVVNTLMLTTPFKALA-ETCEADNSFFNMPLLLFVALIGATVGGLL 59
            +G  +L+      L+ N+L + TP +ALA E CE ++S F+MP+LL VALIGATVGGLL
Sbjct: 86  FEGIGRLKLPVMAVLLTNSLQMATPLEALAAEICEPESSMFSMPILLLVALIGATVGGLL 145

Query: 60  ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 119
           ARQR+GELQR+NEQLRQINAALRRQAKIESYAPSLSYAPVG+RIP+ E+IV+PKK+EL+S
Sbjct: 146 ARQRKGELQRLNEQLRQINAALRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELIS 205

Query: 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 179
           +LKTGK FLRNQ+ EKA+TEFK ALELAQ++KDP EEKKAARGLGASLQRQGKYREAI+Y
Sbjct: 206 KLKTGKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQY 265

Query: 180 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           HSMVL IS+RE E SG TEAYGAIADCYTELGDLE+A +FYD YI+RLE+D
Sbjct: 266 HSMVLAISKRESEDSGITEAYGAIADCYTELGDLEKAGKFYDTYIARLETD 316

Negative regulator of tetrapyrrole biosynthesis (including chlorophyll) in chloroplasts, probably via HEMA1 repression. Inhibits especially the magnesium ion Mg(2+) branch of tetrapyrrole biosynthesis, but independently of heme.
Arabidopsis thaliana (taxid: 3702)

>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%)

Query: 132  DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
            + E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E   
Sbjct: 972  NYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETN 1031

Query: 192  EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
              +    AYG +   Y  LG  ERA  + ++++S
Sbjct: 1032 NPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 1065

Homo sapiens (taxid: 9606)

>sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           + E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E   
Sbjct: 207 NYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETD 266

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct: 267 NPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 300

Mus musculus (taxid: 10090)

>sp|P81274|GPSM2_HUMAN G-protein-signaling modulator 2 OS=Homo sapiens GN=GPSM2 PE=1 SV=3

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 257 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 316

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 317 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 349

Plays an important role in spindle pole orientation. Interacts and contributes to the functional activity of G(i) alpha proteins. Acts to stabilize the apical complex during neuroblast divisions.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
224119612	229	predicted protein [Populus trichocarpa]	0.995	1.0	0.834	1e-108
255576615	332	FLU, putative [Ricinus communis] gi|2235	0.995	0.689	0.820	1e-106
297742973	332	unnamed protein product [Vitis vinifera]	0.995	0.689	0.816	1e-104
147797982	232	hypothetical protein VITISV_027349 [Viti	0.991	0.982	0.815	1e-104
449453383	297	PREDICTED: protein FLUORESCENT IN BLUE L	0.995	0.771	0.786	1e-102
388506112	300	unknown [Lotus japonicus]	0.982	0.753	0.779	1e-99
357514129	300	Tetratricopeptide repeat protein [Medica	0.969	0.743	0.785	2e-99
388522423	300	unknown [Medicago truncatula]	0.969	0.743	0.785	3e-99
358248692	297	uncharacterized protein LOC100818487 [Gl	0.982	0.760	0.784	1e-97
9294636	321	unnamed protein product [Arabidopsis tha	1.0	0.716	0.748	2e-96

>gi|224119612|ref|XP_002331203.1| predicted protein [Populus trichocarpa] gi|222873324|gb|EEF10455.1| predicted protein [Populus trichocarpa]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/229 (83%), Positives = 211/229 (92%)

Query: 2   QGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLAR 61
           QG +QLRS+   FLV N LM TTPF+ALAETCEAD+S FNMPLLLFVAL+GATVGGLLAR
Sbjct: 1   QGNMQLRSSAMAFLVTNALMWTTPFEALAETCEADSSIFNMPLLLFVALVGATVGGLLAR 60

Query: 62  QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRL 121
           QR+GELQR+NEQLRQINAALRRQAKIESYAP+LSYAPVGSRI E EVIVDP+KE+L+SRL
Sbjct: 61  QRKGELQRLNEQLRQINAALRRQAKIESYAPTLSYAPVGSRILESEVIVDPRKEDLISRL 120

Query: 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 181
           K GKNFLRNQD EKAF EFK+ALELAQN+KDP EEKKA RGLGASLQRQGK +EAIKYHS
Sbjct: 121 KVGKNFLRNQDPEKAFVEFKSALELAQNLKDPTEEKKAVRGLGASLQRQGKLQEAIKYHS 180

Query: 182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           MVL IS+REGE SG+TEAYGAIADCYTELGDLE+AA+FYDKYI+RLE+D
Sbjct: 181 MVLAISKREGEESGNTEAYGAIADCYTELGDLEQAAKFYDKYIARLETD 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576615|ref|XP_002529198.1| FLU, putative [Ricinus communis] gi|223531376|gb|EEF33212.1| FLU, putative [Ricinus communis]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/229 (82%), Positives = 211/229 (92%)

Query: 2   QGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLAR 61
           QG ++LRS+ T FLV N LM T PF+ALAET EADNSFFNMP+LLFVAL+GATVGGLLAR
Sbjct: 104 QGNLRLRSSVTAFLVTNALMWTAPFEALAETREADNSFFNMPVLLFVALVGATVGGLLAR 163

Query: 62  QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRL 121
           QRRGELQ++NEQLRQINAALRRQAKIESYAP+LSYAPVGSRI E+EVIVDP+K+EL+SRL
Sbjct: 164 QRRGELQKLNEQLRQINAALRRQAKIESYAPTLSYAPVGSRIAENEVIVDPRKQELISRL 223

Query: 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 181
           K+GK FLRNQD EKAF EFKAALELA+++KDP+EEKKAARGLGASLQRQGKYREAI YHS
Sbjct: 224 KSGKKFLRNQDPEKAFEEFKAALELARSLKDPMEEKKAARGLGASLQRQGKYREAINYHS 283

Query: 182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           MVL IS++EGE SG+TEAYGAIADCYTELGDLERA +FYD YI+RLE D
Sbjct: 284 MVLAISQKEGEESGNTEAYGAIADCYTELGDLERAGKFYDNYIARLEKD 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742973|emb|CBI35840.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/229 (81%), Positives = 205/229 (89%)

Query: 2   QGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLAR 61
           QG V  R   T   V N L+LT PF+ALAETCEA++SFFNMPLL FVALIGATVGGLLAR
Sbjct: 104 QGMVLFRFPATALAVTNALLLTIPFEALAETCEAESSFFNMPLLSFVALIGATVGGLLAR 163

Query: 62  QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRL 121
           QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS+IPE+EVI+DPKKEEL+S L
Sbjct: 164 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSKIPENEVIIDPKKEELISCL 223

Query: 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 181
           K GKNFLRNQ+ EKAF EFK ALELA+ +KDP EEKKAARGLGASLQRQGKYR+AIKYHS
Sbjct: 224 KAGKNFLRNQNPEKAFMEFKTALELARTLKDPTEEKKAARGLGASLQRQGKYRDAIKYHS 283

Query: 182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
            VL+IS+REGE SG+TEAYGAIADCYTELGDLERA +FYD+YI+RLE D
Sbjct: 284 TVLEISKREGENSGNTEAYGAIADCYTELGDLERAGKFYDQYIARLEKD 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797982|emb|CAN65010.1| hypothetical protein VITISV_027349 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/228 (81%), Positives = 204/228 (89%)

Query: 3   GKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQ 62
           G V  R   T   V N L+LT PF+ALAETCEA++SFFNMPLL FVALIGATVGGLLARQ
Sbjct: 5   GMVLFRFPATALAVTNALLLTIPFEALAETCEAESSFFNMPLLSFVALIGATVGGLLARQ 64

Query: 63  RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLK 122
           RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS+IPE+EVI+DPKKEEL+S LK
Sbjct: 65  RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSKIPENEVIIDPKKEELISCLK 124

Query: 123 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 182
            GKNFLRNQ+ EKAF EFK ALELA+ +KDP EEKKAARGLGASLQRQGKYR+AIKYHS 
Sbjct: 125 AGKNFLRNQNPEKAFMEFKTALELARTLKDPTEEKKAARGLGASLQRQGKYRDAIKYHST 184

Query: 183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           VL+IS+REGE SG+TEAYGAIADCYTELGDLERA +FYD+YI+RLE D
Sbjct: 185 VLEISKREGENSGNTEAYGAIADCYTELGDLERAGKFYDQYIARLEKD 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453383|ref|XP_004144437.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Cucumis sativus] gi|449517661|ref|XP_004165863.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Cucumis sativus]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/229 (78%), Positives = 204/229 (89%)

Query: 2   QGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLAR 61
           QG ++ R     FL+ N    + P KA+AETCEA++S FNMP+LL VAL+GATVGGLLAR
Sbjct: 69  QGNIETRFPVMAFLLANVFTFSVPLKAMAETCEAESSAFNMPILLAVALVGATVGGLLAR 128

Query: 62  QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRL 121
           QRRGEL+R+NEQLRQINAALRRQAKIESYAP+LSYAPVG RI E+EVIVDP+KE+L+SRL
Sbjct: 129 QRRGELKRLNEQLRQINAALRRQAKIESYAPTLSYAPVGGRILENEVIVDPRKEDLISRL 188

Query: 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 181
           K+GKNFLRNQD EKAF EFK ALELAQ ++DPIEEKKAARGLGASLQRQGKYREAIKYHS
Sbjct: 189 KSGKNFLRNQDPEKAFVEFKTALELAQGLQDPIEEKKAARGLGASLQRQGKYREAIKYHS 248

Query: 182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           MVL ISEREGE SG+TEA+GAIADCYTELGDLE+AA FYDKYI+RLE+D
Sbjct: 249 MVLAISEREGEQSGNTEAFGAIADCYTELGDLEKAAYFYDKYIARLETD 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506112|gb|AFK41122.1| unknown [Lotus japonicus]

 Score =  368 bits (945), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 177/227 (77%), Positives = 202/227 (88%), Gaps = 1/227 (0%)

Query: 5   VQLRSTTTTFLVVNTLMLTTPFKALAETCEA-DNSFFNMPLLLFVALIGATVGGLLARQR 63
           +  +  + TFL  N LM T P KALAETCEA  NSFFNMP+LL VALIGATVGGL+ARQR
Sbjct: 74  IHQKFPSLTFLASNILMFTMPSKALAETCEAAGNSFFNMPILLAVALIGATVGGLVARQR 133

Query: 64  RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKT 123
           +GELQRVNEQL QIN ALR+QAKIESYAPSLSYAP+G+RIP++E+IVDPKK+EL+S+LK+
Sbjct: 134 KGELQRVNEQLLQINTALRKQAKIESYAPSLSYAPIGARIPDNEIIVDPKKQELISKLKS 193

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           GKNFLRNQ L+KAFTEFK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMV
Sbjct: 194 GKNFLRNQQLDKAFTEFKIALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMV 253

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           L IS REGE SG++EA+GAIADCYTELGDLE+A  +YDKYI+ LE D
Sbjct: 254 LAISGREGEDSGNSEAFGAIADCYTELGDLEKAGEYYDKYIAMLEKD 300

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514129|ref|XP_003627353.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355521375|gb|AET01829.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/224 (78%), Positives = 201/224 (89%), Gaps = 1/224 (0%)

Query: 8   RSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGEL 67
           R  ++ FL  N LM + P KALAETCEADNS FNMP+LL VALIGATVGGL+ARQR+GEL
Sbjct: 77  RFHSSLFLASNFLMFSMPCKALAETCEADNSMFNMPILLAVALIGATVGGLVARQRKGEL 136

Query: 68  QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKN 126
           QR+NEQL QINAALR+QAKIESYAP+LSYAP+G  RI E E+IVDPKK+EL+S+LK+GKN
Sbjct: 137 QRLNEQLLQINAALRKQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKN 196

Query: 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
           FLRNQ  ++AFTEFK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+A+KYHSMVL I
Sbjct: 197 FLRNQQPDRAFTEFKTALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSI 256

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           SEREGE SGSTEA+GAIADCYTELGDLE+A ++YDKYI+RLE D
Sbjct: 257 SEREGEDSGSTEAFGAIADCYTELGDLEKAGQYYDKYIARLEKD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522423|gb|AFK49273.1| unknown [Medicago truncatula]

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 176/224 (78%), Positives = 200/224 (89%), Gaps = 1/224 (0%)

Query: 8   RSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGEL 67
           R  ++ FL  N LM + P KALAETCEADNS FNMP+LL VALIGATVGGL ARQR+GEL
Sbjct: 77  RFHSSLFLASNFLMFSMPCKALAETCEADNSMFNMPILLAVALIGATVGGLAARQRKGEL 136

Query: 68  QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKN 126
           QR+NEQL QINAALR+QAKIESYAP+LSYAP+G  RI E E+IVDPKK+EL+S+LK+GKN
Sbjct: 137 QRLNEQLLQINAALRKQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKN 196

Query: 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
           FLRNQ  ++AFTEFK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+A+KYHSMVL I
Sbjct: 197 FLRNQQPDRAFTEFKTALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSI 256

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           SEREGE SGSTEA+GAIADCYTELGDLE+A ++YDKYI+RLE D
Sbjct: 257 SEREGEDSGSTEAFGAIADCYTELGDLEKAGQYYDKYIARLEKD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248692|ref|NP_001239924.1| uncharacterized protein LOC100818487 [Glycine max] gi|255645496|gb|ACU23243.1| unknown [Glycine max]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 178/227 (78%), Positives = 199/227 (87%), Gaps = 1/227 (0%)

Query: 5   VQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRR 64
           +  R  +  F+  N LM + P  ALAETCEADNS FNMP+LL VALIGATVGGLLARQRR
Sbjct: 71  IHQRFPSLIFVASNVLMFSMPNTALAETCEADNSVFNMPILLAVALIGATVGGLLARQRR 130

Query: 65  GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKT 123
            ELQRVNEQL QINAALR+QAKIESYAPSLSYAP+G  RI ++E+IVDPKK+EL+S+LK 
Sbjct: 131 NELQRVNEQLIQINAALRKQAKIESYAPSLSYAPIGGGRILDNEIIVDPKKQELISKLKN 190

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           GKNFLRNQ  +KAFTEFK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMV
Sbjct: 191 GKNFLRNQQPDKAFTEFKNALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMV 250

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           L ISEREGE SGSTEA+GAIADCYTELG+LE+A +FYDKYI+RLE D
Sbjct: 251 LGISEREGEDSGSTEAFGAIADCYTELGELEKAGQFYDKYIARLEKD 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294636|dbj|BAB02975.1| unnamed protein product [Arabidopsis thaliana]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 202/231 (87%), Gaps = 1/231 (0%)

Query: 1   MQGKVQLRSTTTTFLVVNTLMLTTPFKALA-ETCEADNSFFNMPLLLFVALIGATVGGLL 59
            QG  +L+      L+ N+L + TP +ALA E CE ++S F+MP+LL VALIGATVGGLL
Sbjct: 91  WQGIGRLKLPVMAVLLTNSLQMATPLEALAAEICEPESSMFSMPILLLVALIGATVGGLL 150

Query: 60  ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 119
           ARQR+GELQR+NEQLRQINAALRRQAKIESYAPSLSYAPVG+RIP+ E+IV+PKK+EL+S
Sbjct: 151 ARQRKGELQRLNEQLRQINAALRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELIS 210

Query: 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 179
           +LKTGK FLRNQ+ EKA+TEFK ALELAQ++KDP EEKKAARGLGASLQRQGKYREAI+Y
Sbjct: 211 KLKTGKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQY 270

Query: 180 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           HSMVL IS+RE E SG TEAYGAIADCYTELGDLE+A +FYD YI+RLE+D
Sbjct: 271 HSMVLAISKRESEDSGITEAYGAIADCYTELGDLEKAGKFYDTYIARLETD 321

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
MGI|MGI:2140873	1691	Ttc28 "tetratricopeptide repea	0.4	0.054	0.347	4.7e-07
UNIPROTKB|K7ZRV2	2481	TPRBK "TPR repeat-containing b	0.4	0.037	0.347	5.5e-07
UNIPROTKB|E1BS79	588	GPSM1 "Uncharacterized protein	0.452	0.176	0.292	0.00027
UNIPROTKB|E1BR28	663	GPSM2 "Uncharacterized protein	0.465	0.161	0.293	0.00041
TAIR|locus:2089353	475	AT3G16760 [Arabidopsis thalian	0.252	0.122	0.379	0.00044

MGI|MGI:2140873 Ttc28 "tetratricopeptide repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:   134 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 193
             E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E     
Sbjct:   209 EQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNP 268

Query:   194 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct:   269 TCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 300

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=ISO

GO:0007346 "regulation of mitotic cell cycle" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

GO:0097431 "mitotic spindle pole" evidence=ISO

GO:1990023 "mitotic spindle midzone" evidence=ISO

UNIPROTKB|K7ZRV2 TPRBK "TPR repeat-containing big gene cloned at Keio" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:   134 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 193
             E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E     
Sbjct:   974 EQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNP 1033

Query:   194 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct:  1034 TCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 1065

GO:0007067 "mitosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0030496 "midbody" evidence=IEA

UNIPROTKB|E1BS79 GPSM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query:   119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK 178
             S L     FL   D+   +  +K  L+L++ +KD   E +A   LG +      Y +AI+
Sbjct:   227 SNLGNAHIFLGRFDISAEY--YKKTLQLSRQLKDQAVEAQACYSLGNTYTLLQDYEKAIE 284

Query:   179 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
             YH   L I++  G+  G   A  ++ + Y  LG  E+A  F  K++
Sbjct:   285 YHLKHLVIAQELGDRVGEGRACWSLGNAYVSLGSHEQALHFARKHL 330

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|E1BR28 GPSM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 0.00041, P = 0.00041
 Identities = 32/109 (29%), Positives = 54/109 (49%)

Query:   124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
             G  ++   + E A   +K  L+LA+ +KD   E +A   LG +      Y +AI YH   
Sbjct:   251 GNAYIFLGEFETASEYYKRTLQLARQLKDRAVEAQACYSLGNTYTLLQDYEKAIDYHLKH 310

Query:   184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 230
             L I++   +  G   A  ++ + YT LG+ ++A  F +++  ISR   D
Sbjct:   311 LVIAQELNDKIGEGRACWSLGNAYTALGNHDQAMHFAERHLEISREVGD 359

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

TAIR|locus:2089353 AT3G16760 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query:   159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 216
             +A+  G   QRQG+Y +AIK+ S  + + +R G+ +GS E     A CY E+G+ ++A
Sbjct:   355 SAKNKGIDNQRQGQYADAIKWLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKKA 412


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      230       230   0.00083  113 3  11 22  0.42    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  556 (59 KB)
  Total size of DFA:  142 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.22u 0.18s 24.40t   Elapsed:  00:00:01
  Total cpu time:  24.22u 0.18s 24.40t   Elapsed:  00:00:01
  Start:  Mon May 20 18:35:15 2013   End:  Mon May 20 18:35:16 2013

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.158.86.1 hypothetical protein (229 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.004

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELG 211
             +   A   L   L+R G Y EA++     L+++   GE    T  A   +A  Y  LG
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 212 DLERAARFYDKYISRLES 229
           D + A  + +K ++  E+
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  + +  D ++A   ++ ALEL  +  D      A   L A+  + GKY EA++ +   
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNAD------AYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           L++         + +AY  +   Y +LG  E A   Y+K + 
Sbjct: 61  LELDPD------NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSM 182
                R  D ++A    + ALELA+ +  D  E  +A   L       G Y EA++Y   
Sbjct: 12  ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71

Query: 183 VLQISER 189
            L + E 
Sbjct: 72  ALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 217
           +A   LG    + G Y EA++Y+   L++         + +AY  +A  Y +LG  E A 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEAL 54

Query: 218 RFYDKYIS 225
             Y+K + 
Sbjct: 55  EDYEKALE 62

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERA 216
           +A + LG +L + G Y EAI+ +   L++         + EAY  +A  Y +LG D E A
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPD------NAEAYYNLALAYLKLGKDYEEA 57

Query: 217 ARFYDKYIS 225
               +K + 
Sbjct: 58  LEDLEKALE 66

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.55
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.53
PRK15359	144	type III secretion system chaperone protein SscB;	99.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.52
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.45
KOG0553	304	consensus TPR repeat-containing protein [General f	99.44
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.44
PRK11189	296	lipoprotein NlpI; Provisional	99.42
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.35
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.33
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.33
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.32
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.32
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.31
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.31
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.3
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.3
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.29
KOG0553	304	consensus TPR repeat-containing protein [General f	99.27
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.26
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.26
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.25
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.24
PRK10803	263	tol-pal system protein YbgF; Provisional	99.24
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.23
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.23
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.23
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.22
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.19
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.18
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.18
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.17
KOG1126	638	consensus DNA-binding cell division cycle control	99.17
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.15
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.14
PRK12370	553	invasion protein regulator; Provisional	99.13
PRK15359	144	type III secretion system chaperone protein SscB;	99.13
PRK12370	553	invasion protein regulator; Provisional	99.12
PRK11189	296	lipoprotein NlpI; Provisional	99.11
KOG1125	579	consensus TPR repeat-containing protein [General f	99.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.1
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.07
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.07
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.07
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.05
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.03
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.02
KOG1126	638	consensus DNA-binding cell division cycle control	99.01
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.01
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.96
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.96
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.94
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.94
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.93
PRK15331	165	chaperone protein SicA; Provisional	98.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.93
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.9
PF12688	120	TPR_5: Tetratrico peptide repeat	98.9
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.89
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.89
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.89
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.88
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.85
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.84
KOG2003	840	consensus TPR repeat-containing protein [General f	98.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.83
KOG4234	271	consensus TPR repeat-containing protein [General f	98.82
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.82
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.8
KOG4555	175	consensus TPR repeat-containing protein [Function	98.78
PLN02789	320	farnesyltranstransferase	98.78
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.76
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.74
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.71
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.69
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.69
PF13512	142	TPR_18: Tetratricopeptide repeat	98.69
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.67
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
KOG1129	478	consensus TPR repeat-containing protein [General f	98.64
KOG1125	579	consensus TPR repeat-containing protein [General f	98.63
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.6
PF13371	73	TPR_9: Tetratricopeptide repeat	98.59
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.59
KOG1586	288	consensus Protein required for fusion of vesicles	98.59
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.59
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.59
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.58
PRK14574	822	hmsH outer membrane protein; Provisional	98.58
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.58
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.58
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.56
KOG2076	895	consensus RNA polymerase III transcription factor	98.54
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.54
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.53
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.51
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.5
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.49
KOG4234	271	consensus TPR repeat-containing protein [General f	98.48
KOG1586	288	consensus Protein required for fusion of vesicles	98.47
PRK04841	903	transcriptional regulator MalT; Provisional	98.47
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.47
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.45
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.45
KOG2003	840	consensus TPR repeat-containing protein [General f	98.44
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.43
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.43
PLN02789	320	farnesyltranstransferase	98.43
KOG1129	478	consensus TPR repeat-containing protein [General f	98.42
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.42
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.42
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.41
PF13371	73	TPR_9: Tetratricopeptide repeat	98.4
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.4
KOG4555	175	consensus TPR repeat-containing protein [Function	98.4
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.39
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.39
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.37
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.37
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.36
KOG2076	895	consensus RNA polymerase III transcription factor	98.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.34
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.33
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.32
PRK10803	263	tol-pal system protein YbgF; Provisional	98.31
PRK04841	903	transcriptional regulator MalT; Provisional	98.31
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.31
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.27
KOG1585	308	consensus Protein required for fusion of vesicles	98.23
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.22
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.2
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.18
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.16
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	98.13
PF12688	120	TPR_5: Tetratrico peptide repeat	98.12
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.12
PRK14574	822	hmsH outer membrane protein; Provisional	98.12
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.06
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	98.06
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.04
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.04
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.02
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.99
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.98
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.98
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.97
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.96
PF13431	34	TPR_17: Tetratricopeptide repeat	97.95
PRK11906	458	transcriptional regulator; Provisional	97.93
PF13428	44	TPR_14: Tetratricopeptide repeat	97.91
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.9
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.87
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.85
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.84
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.82
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.82
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.81
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.79
PRK15331	165	chaperone protein SicA; Provisional	97.78
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.77
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.75
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.73
PF13512	142	TPR_18: Tetratricopeptide repeat	97.71
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.68
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.67
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.64
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.6
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.56
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.56
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.54
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.53
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.52
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.52
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.5
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.47
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.47
KOG1585	308	consensus Protein required for fusion of vesicles	97.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.45
PF13431	34	TPR_17: Tetratricopeptide repeat	97.42
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.41
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.36
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.34
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.31
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.3
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.29
PF13428	44	TPR_14: Tetratricopeptide repeat	97.29
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.23
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.22
PRK11906	458	transcriptional regulator; Provisional	97.21
KOG2471	696	consensus TPR repeat-containing protein [General f	97.19
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.15
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.12
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.11
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.08
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.07
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.05
PLN03218	1060	maturation of RBCL 1; Provisional	97.03
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.01
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.0
PLN03218	1060	maturation of RBCL 1; Provisional	96.97
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.95
KOG2471	696	consensus TPR repeat-containing protein [General f	96.95
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.94
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.89
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.88
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	96.85
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.85
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.84
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.83
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.79
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.75
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.71
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.66
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.61
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.58
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.56
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.53
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.39
PLN03077	857	Protein ECB2; Provisional	96.38
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.36
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.31
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.3
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.29
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.25
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.25
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.22
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.21
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.16
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.13
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.03
PRK10941	269	hypothetical protein; Provisional	95.98
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.92
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.9
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.85
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.82
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.7
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.68
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.63
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.6
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.54
PLN03077	857	Protein ECB2; Provisional	95.52
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.4
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.37
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.27
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.21
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.21
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.19
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.19
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.17
COG5187	412	RPN7 26S proteasome regulatory complex component,	95.0
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.97
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.92
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.87
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.83
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.66
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.61
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.58
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.56
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.53
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.46
KOG2581	493	consensus 26S proteasome regulatory complex, subun	94.42
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.37
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.33
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.31
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.27
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.24
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	94.21
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.14
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.11
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.93
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.9
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.83
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.66
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.53
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.48
KOG1310	758	consensus WD40 repeat protein [General function pr	93.39
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.37
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.3
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	93.27
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.1
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.96
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.94
KOG3783	546	consensus Uncharacterized conserved protein [Funct	92.94
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.78
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.76
KOG3364	149	consensus Membrane protein involved in organellar	92.56
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.38
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.31
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.18
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.16
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	92.16
KOG3364	149	consensus Membrane protein involved in organellar	92.04
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	92.03
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	92.0
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	92.0
KOG2908	380	consensus 26S proteasome regulatory complex, subun	91.92
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.81
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.81
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.65
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.49
PRK10941	269	hypothetical protein; Provisional	91.43
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	91.3
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.23
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	90.67
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.52
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	90.46
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.37
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	90.36
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	90.33
COG3947	361	Response regulator containing CheY-like receiver a	90.19
KOG2581	493	consensus 26S proteasome regulatory complex, subun	89.96
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.85
COG5187	412	RPN7 26S proteasome regulatory complex component,	89.84
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	89.64
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	89.58
KOG3783	546	consensus Uncharacterized conserved protein [Funct	89.08
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	88.89
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.55
KOG2047	835	consensus mRNA splicing factor [RNA processing and	88.47
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.98
KOG1463	411	consensus 26S proteasome regulatory complex, subun	87.85
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	87.33
COG5159	421	RPN6 26S proteasome regulatory complex component [	87.23
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	87.09
COG2178	204	Predicted RNA-binding protein of the translin fami	86.38
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	86.19
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	86.04
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	86.01
COG4976	287	Predicted methyltransferase (contains TPR repeat)	85.96
PF04212	69	MIT: MIT (microtubule interacting and transport) d	85.77
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.56
COG2912	269	Uncharacterized conserved protein [Function unknow	85.09
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	85.03
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	84.67
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.97
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	83.4
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	83.29
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.15
PF12854	34	PPR_1: PPR repeat	83.05
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	82.8
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.78
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.15
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	82.09
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	81.85
KOG0687	393	consensus 26S proteasome regulatory complex, subun	81.6
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	81.56
COG5159	421	RPN6 26S proteasome regulatory complex component [	81.54
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	81.15
KOG1310	758	consensus WD40 repeat protein [General function pr	81.03
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	80.86
KOG1463	411	consensus 26S proteasome regulatory complex, subun	80.71
KOG4014	248	consensus Uncharacterized conserved protein (conta	80.59
PF12854	34	PPR_1: PPR repeat	80.49
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	80.44
cd02656	75	MIT MIT: domain contained within Microtubule Inter	80.12

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.55  E-value=6.2e-14  Score=118.08  Aligned_cols=129  Identities=20%  Similarity=0.282  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 026948           71 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  150 (230)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  150 (230)
                      ++..+.+.+.++-.++...|.+++.+.+.                .+.+.+++|.+|..+|.++.|...|.+++++.+. 
T Consensus       324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~----------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-  386 (966)
T KOG4626|consen  324 NNLANALKDKGSVTEAVDCYNKALRLCPN----------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-  386 (966)
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-
Confidence            33344444444445555566666666555                5667888888888888888888888888886555 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                           .+.++.|||.+|.++|++++|+.+|+.++++.      |..++++.|+|.+|.++|+-+.|+.+|.+|+.+.
T Consensus       387 -----~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  387 -----FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             -----hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence                 78888888888888888888888888888885      7888888888888888888888888888888764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.53  E-value=2.4e-13  Score=101.93  Aligned_cols=128  Identities=17%  Similarity=0.223  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH
Q 026948           75 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  154 (230)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  154 (230)
                      ..+...+....+..++++++...|.                ...++..++.+|...|+.+.|.+.|++|+++.++     
T Consensus        43 l~YL~~gd~~~A~~nlekAL~~DPs----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-----  101 (250)
T COG3063          43 LGYLQQGDYAQAKKNLEKALEHDPS----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-----  101 (250)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-----
Confidence            3344445667777788899988887                5668889999999999999999999999997776     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                       ....++|.|..++.+|+|++|..+|++|+.-.    ..+..+.++.|+|.|-.+.|+++.|.++|++++++-+
T Consensus       102 -~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp  170 (250)
T COG3063         102 -NGDVLNNYGAFLCAQGRPEEAMQQFERALADP----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP  170 (250)
T ss_pred             -ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence             78889999999999999999999999997653    3456788999999999999999999999999998653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.52  E-value=1.9e-13  Score=98.57  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      +..+|..+...|++++|+.+|++++.+.+.      ...++.++|.++...|++++|+..|++++.+.      |..+.+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------p~~~~a   94 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYGHALMLD------ASHPEP   94 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCcHH
Confidence            556899999999999999999999985444      78899999999999999999999999999985      888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++++|.++..+|++++|+..|++++++.+.
T Consensus        95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359         95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999987653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.52  E-value=5.7e-13  Score=101.11  Aligned_cols=120  Identities=15%  Similarity=0.216  Sum_probs=105.3

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+..+..+++.+...|.                +...+..+|.+|...|++++|+..|++++++.++      ....+.
T Consensus        54 ~~~~~i~~l~~~L~~~P~----------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~  111 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQ----------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYA  111 (198)
T ss_pred             hHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            456667778888887776                5668999999999999999999999999997766      788899


Q ss_pred             HHHHHH-HHcCC--HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASL-QRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~-~~~~~--~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++|.++ ...|+  +++|...++++++..      |....++.++|.++...|++++|+.+|+++++..++
T Consensus       112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~d------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        112 ALATVLYYQAGQHMTPQTREMIDKALALD------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            999975 67787  599999999999986      888999999999999999999999999999987654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.50  E-value=2.3e-13  Score=114.65  Aligned_cols=133  Identities=17%  Similarity=0.221  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      +.+++.++...+.+..+.+..-|.++++..|.                -+.++.++|.+|-++|++++|+.+|++++++.
T Consensus       355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~----------------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPE----------------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHhhChh----------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            56677677777777888888889999988886                55688999999999999999999999999965


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +.      .+.++.|+|+.|..+|+.+.|+.+|.+||.+.      |..++++.|+|.+|...|+..+|+..|+.++.+-
T Consensus       419 P~------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  419 PT------FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             ch------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            55      99999999999999999999999999999996      8899999999999999999999999999999864


Q ss_pred             h
Q 026948          228 E  228 (230)
Q Consensus       228 ~  228 (230)
                      +
T Consensus       487 P  487 (966)
T KOG4626|consen  487 P  487 (966)
T ss_pred             C
Confidence            3

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.45  E-value=2.7e-12  Score=91.91  Aligned_cols=102  Identities=18%  Similarity=0.121  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      .+.....+..|..++..|++++|...|+-...+.+.      ....+++||.++..+|+|.+|++.|.+++.+.      
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------   99 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------   99 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            446667889999999999999999999999986555      88999999999999999999999999999986      


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++.+..+.+.|.|+...|+.+.|...|+.++.+.
T Consensus       100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            7888999999999999999999999999999876

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=9.5e-13  Score=102.39  Aligned_cols=104  Identities=25%  Similarity=0.370  Sum_probs=96.1

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      +...+..+-.-|.-.+..++|.+|+..|.+|+.+.++      .+..|++.+.+|.++|+|+.|++.++.|+.++     
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-----  145 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-----  145 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----
Confidence            4556667778999999999999999999999997766      78889999999999999999999999999996     


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                       |....+|..||.+|..+|++++|++.|+|||++-+
T Consensus       146 -p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP  180 (304)
T KOG0553|consen  146 -PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP  180 (304)
T ss_pred             -hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence             88999999999999999999999999999998754

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.44  E-value=1.7e-12  Score=83.55  Aligned_cols=75  Identities=28%  Similarity=0.546  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +..+.++.++|.++..+|+|++|+++|++++++.+..++.. ..+.++.++|.+|..+|++++|+.++++++++.+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            44678899999999999999999999999999966666543 5688999999999999999999999999999876

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=6.2e-12  Score=101.52  Aligned_cols=103  Identities=19%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ..+..++.+|.+|...|++++|+..|++++++.++      .+.+++++|.++...|++++|+..|++++++.      |
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P  129 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------P  129 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C
Confidence            34567889999999999999999999999996554      67889999999999999999999999999885      7


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ....++.++|.++...|++++|+..++++++..+.
T Consensus       130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189        130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            77889999999999999999999999999987654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.41  E-value=5.1e-12  Score=90.02  Aligned_cols=102  Identities=21%  Similarity=0.245  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .....+.+|..+...|++++|...+++++...+.      ...++.++|.++...|++++|+.++++++++.      |.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~   83 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD------PD   83 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CC
Confidence            4556889999999999999999999999885443      67889999999999999999999999998885      66


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ....++++|.+|...|++++|..+|+++++..+.
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE  117 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            7899999999999999999999999999987653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.35  E-value=4.5e-11  Score=91.93  Aligned_cols=119  Identities=19%  Similarity=0.270  Sum_probs=93.0

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|+.++.++++..    ........+.
T Consensus        80 ~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~  139 (234)
T TIGR02521        80 ELEKAEDSFRRALTLNPN----------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLE  139 (234)
T ss_pred             CHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccccchHHHH
Confidence            445556666666655443                22367788999999999999999999988732    1223456788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ++|.++...|++++|+.++++++...      +.....+..+|.++...|++++|..+++++++.
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       140 NAGLCALKAGDFDKAEKYLTRALQID------PQRPESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            89999999999999999999998874      555778889999999999999999999998876

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.33  E-value=1.5e-10  Score=98.45  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=116.8

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKK  158 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~  158 (230)
                      .++..++..|.+++.....        ....+...-+.++.++|..|...|+|++|..++++|+++..+.  ...+....
T Consensus       255 ~k~~eAv~ly~~AL~i~e~--------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  255 GKYDEAVNLYEEALTIREE--------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            3566777777777766543        1224556677788899999999999999999999999999872  35556777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.+++.++..++++++|+.++++++++....  .+.+..+..+.++|.+|..+|+|++|.+.|++|+.+..
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR  398 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998843  34446788999999999999999999999999999874

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.33  E-value=4.4e-11  Score=105.94  Aligned_cols=98  Identities=9%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      .+++.+|.+++..|++++|+.+|++++++.+.      ...++.++|.++...|++++|+..|+++++..      |..+
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~  467 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAP  467 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCh
Confidence            35556666666666666666666666664333      44556666777777777777777777766653      5556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .++..+|.++..+|++++|+..|++++.+.
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELE  497 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            667777777777777777777777776654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.32  E-value=5.3e-12  Score=102.13  Aligned_cols=107  Identities=21%  Similarity=0.313  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      +.++|++|...|+++.|+++|++++.++..+++....+..++.||+.|.-..++++||+|+++-+.+.++.+|..+...+
T Consensus       238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra  317 (639)
T KOG1130|consen  238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA  317 (639)
T ss_pred             hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            33444444455555555555555555555555555555555555555555555555555555555555544444444455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ++.+|.+|-.+|+.++|..+.++.+++
T Consensus       318 cwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  318 CWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            555555555555555555544444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=4.2e-11  Score=98.07  Aligned_cols=118  Identities=19%  Similarity=0.346  Sum_probs=93.8

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..|++++..-|.                ...++.-+|+-|..+++...|++.|++|+++.+.      ..++++
T Consensus       345 eHEKAv~YFkRALkLNp~----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWY  402 (559)
T KOG1155|consen  345 EHEKAVMYFKRALKLNPK----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWY  402 (559)
T ss_pred             hHHHHHHHHHHHHhcCcc----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHh
Confidence            346666667777766655                5557778888888888888888888888886655      778888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++|..|--++.+.=|+-+|++|+...      |.++..|..||.||.++++.++|+.+|.+|+...
T Consensus       403 GLGQaYeim~Mh~YaLyYfqkA~~~k------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  403 GLGQAYEIMKMHFYALYYFQKALELK------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             hhhHHHHHhcchHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            88888888888888888888888774      7778888888888888888888888888887654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.31  E-value=1.3e-10  Score=86.12  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=88.5

Q ss_pred             ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      .....+..++.+|.++..+|++++|+..|.+++.+.+   ++.....++.++|.++...|++++|+.++++++.+.    
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~----  102 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN----  102 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence            3344677889999999999999999999999998743   233356689999999999999999999999999885    


Q ss_pred             CcccHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhhh
Q 026948          192 EYSGSTEAYGAIADCYT-------ELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       192 ~~~~~~~~~~~lg~~y~-------~~g~~~~A~~~~~~al~~~~  228 (230)
                        +.....+.++|.++.       .+|+++.|..++++++..++
T Consensus       103 --~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033        103 --PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             --cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence              555566777777777       89999988888888776653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.31  E-value=1.9e-10  Score=92.20  Aligned_cols=146  Identities=20%  Similarity=0.292  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      ....+...........+...|.++......          .++....+..+...+.+|... ++++|+++|++++.++..
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~  106 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE  106 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence            333334343434667777777777766654          344555566666777777666 999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          150 VKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .+.....+.++..+|.+|... |++++|+++|++|+++.+..+.......++..+|.++..+|+|++|++.|++....
T Consensus       107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            999999999999999999999 99999999999999999988877778889999999999999999999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.30  E-value=5.3e-11  Score=105.45  Aligned_cols=133  Identities=13%  Similarity=0.069  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+...+.-.....+.+.++..+.+++...|.                ....++.+|.++...|++++|+.++++++++.+
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p  396 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR----------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS  396 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3444444444555888899999999988775                445788999999999999999999999998644


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .      ...+++++|.++...|++++|+.+|++++++.      |.....+.++|.++..+|++++|+..|++++...+
T Consensus       397 ~------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P  464 (615)
T TIGR00990       397 E------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP  464 (615)
T ss_pred             C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4      56789999999999999999999999999885      77788999999999999999999999999998765


Q ss_pred             c
Q 026948          229 S  229 (230)
Q Consensus       229 ~  229 (230)
                      .
T Consensus       465 ~  465 (615)
T TIGR00990       465 E  465 (615)
T ss_pred             C
Confidence            3

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.30  E-value=8e-11  Score=75.72  Aligned_cols=73  Identities=21%  Similarity=0.342  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  188 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~  188 (230)
                      .+.++.++|.+|..+|+|++|+.+|++++++....++.. ..+.++.++|.++...|++++|++++++++++.+
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            456788999999999999999999999999977777654 4689999999999999999999999999999864

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.29  E-value=4.1e-11  Score=97.07  Aligned_cols=136  Identities=18%  Similarity=0.264  Sum_probs=121.1

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+.+...|..-++....          .++...+-.++=++|+.|+-.|+|+.|+...+.-+.+++..+|.....+++.|
T Consensus       171 l~~Av~fy~eNL~l~~~----------lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sN  240 (639)
T KOG1130|consen  171 LENAVKFYMENLELSEK----------LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSN  240 (639)
T ss_pred             HHHHHHHHHHHHHHHHH----------hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc
Confidence            44444555555555544          35555566688899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +|+++.-.|+++.|+++|++.+.+..+.++....+...+.+|.+|....++++|+.|+++-+.+.+
T Consensus       241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=1.1e-10  Score=91.02  Aligned_cols=124  Identities=15%  Similarity=0.236  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 026948           63 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  142 (230)
Q Consensus        63 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  142 (230)
                      .....++|..++.......+++.++..|.+++...|.                ++..+.+++..|.++|.|+.|+...+.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----------------nAVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----------------NAVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----------------cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3445568888999999999999999999999999987                555666999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH
Q 026948          143 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  214 (230)
Q Consensus       143 al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  214 (230)
                      ++.+.+.      ..++|..||.+|..+|+|.+|++.|+++|++.      |.......+|..+-.++++.+
T Consensus       141 Al~iDp~------yskay~RLG~A~~~~gk~~~A~~aykKaLeld------P~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPH------YSKAYGRLGLAYLALGKYEEAIEAYKKALELD------PDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChH------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccC------CCcHHHHHHHHHHHHHhcCCC
Confidence            9996555      89999999999999999999999999999996      778888899988888777665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.26  E-value=8.2e-11  Score=97.22  Aligned_cols=98  Identities=15%  Similarity=0.187  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      +...|...+..|+|++|+..|.+++++.+.      ...++.++|.++...|++++|+..+++++.+.      |..+.+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a   72 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKA   72 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHH
Confidence            556789999999999999999999997655      67789999999999999999999999999996      778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      |+++|.++..+|+|++|+.+|++++.+.+.
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGASLAPG  102 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999987643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=6e-11  Score=99.16  Aligned_cols=119  Identities=24%  Similarity=0.340  Sum_probs=102.2

Q ss_pred             hhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHH
Q 026948           88 ESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGAS  166 (230)
Q Consensus        88 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~-~~~~~~~lg~~  166 (230)
                      .-+.+++...|.                +...+..+|.+.+..+.|++|..+|+.++...+....... -.....|||.+
T Consensus       401 ~Ff~~A~ai~P~----------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~  464 (611)
T KOG1173|consen  401 KFFKQALAIAPS----------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA  464 (611)
T ss_pred             HHHHHHHhcCCC----------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence            345667777765                4457788999999999999999999999977776544443 45668999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          167 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       167 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +++++.|++||.+|++++.+.      |..+.+|..+|.+|..+|++++|+++|.++|.+-+
T Consensus       465 ~Rkl~~~~eAI~~~q~aL~l~------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  465 YRKLNKYEEAIDYYQKALLLS------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             HHHHhhHHHHHHHHHHHHHcC------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            999999999999999999986      77899999999999999999999999999998654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.25  E-value=1.1e-10  Score=76.16  Aligned_cols=84  Identities=26%  Similarity=0.410  Sum_probs=69.5

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948          129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  208 (230)
Q Consensus       129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  208 (230)
                      .+|+|+.|+.++++.++..+.  +.  ....++.+|.++++.|+|++|++.+++ .+..      +......+.+|.|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------~~~~~~~~l~a~~~~   69 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------PSNPDIHYLLARCLL   69 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------HCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------CCCHHHHHHHHHHHH
Confidence            368999999999999997764  22  455677799999999999999999999 5554      455677888899999


Q ss_pred             HcCCHHHHHHHHHHH
Q 026948          209 ELGDLERAARFYDKY  223 (230)
Q Consensus       209 ~~g~~~~A~~~~~~a  223 (230)
                      ++|+|++|+..+++|
T Consensus        70 ~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   70 KLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTT-HHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhcC
Confidence            999999999999876

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.24  E-value=6.5e-11  Score=74.24  Aligned_cols=65  Identities=31%  Similarity=0.471  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRL  227 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~  227 (230)
                      +..+..+|.++...|+|++|+.+|++++++.      |..+.+++++|.+|..+| ++++|+.++++++++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            5678899999999999999999999999996      788999999999999999 7999999999999864

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.24  E-value=8.4e-09  Score=81.45  Aligned_cols=106  Identities=15%  Similarity=0.184  Sum_probs=89.7

Q ss_pred             HHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          118 LSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       118 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ...+..|..+ ...|+|++|+..|++.++.+++   ......+++.+|.+|+..|+|++|+..|+++++..   ++.+..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcch
Confidence            3566677765 5679999999999999986655   23346789999999999999999999999987664   455678


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +++++.+|.++..+|++++|...|+++++.+++
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            899999999999999999999999999987653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.23  E-value=5.4e-10  Score=83.07  Aligned_cols=106  Identities=19%  Similarity=0.324  Sum_probs=85.0

Q ss_pred             ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      +....+..++.+|..+...|++++|+.+|++++++.+..   .....++.++|.++...|++++|+.++++++.+.    
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----  102 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELN----  102 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence            344567788999999999999999999999999875542   2245789999999999999999999999999985    


Q ss_pred             CcccHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh
Q 026948          192 EYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISR  226 (230)
Q Consensus       192 ~~~~~~~~~~~lg~~y~~~g~-------~~~A~~~~~~al~~  226 (230)
                        |.....+..+|.++...|+       +++|...|+++++.
T Consensus       103 --p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~  142 (172)
T PRK02603        103 --PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY  142 (172)
T ss_pred             --cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence              6667888899999988766       44555555555444

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.5e-10  Score=94.96  Aligned_cols=118  Identities=27%  Similarity=0.378  Sum_probs=106.1

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      ....+++.|+++++..|.                +..+++.+|+.|..++-.--|+.+|++|+++-+.      ..+.+.
T Consensus       379 Nt~AAi~sYRrAvdi~p~----------------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~  436 (559)
T KOG1155|consen  379 NTHAAIESYRRAVDINPR----------------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWV  436 (559)
T ss_pred             ccHHHHHHHHHHHhcCch----------------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHH
Confidence            568888999999988877                6779999999999999999999999999996554      788899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .||.||.+.++.++|+++|.+|+...      .-...++..||..|.+++++++|..+|++.++..
T Consensus       437 aLG~CY~kl~~~~eAiKCykrai~~~------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  437 ALGECYEKLNRLEEAIKCYKRAILLG------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999885      2256889999999999999999999999999854

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.23  E-value=1.3e-09  Score=92.80  Aligned_cols=147  Identities=15%  Similarity=0.124  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-
Q 026948           73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELL-SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-  150 (230)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-  150 (230)
                      ....+...++++.+...+..++....+.         .+.....+. ....+|..|..+++|++|+..|++|+++.... 
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~---------~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKT---------SGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHc---------cCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            4455555567888888888888774331         112222333 34469999999999999999999999999864 


Q ss_pred             -CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          151 -KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       151 -~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                       .+++..+..+.+||..|...|+|++|..++++|+++.++.  ...+.....+.+++.++..++++++|..+++++++++
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence             4777788899999999999999999999999999999883  3445677889999999999999999999999999987


Q ss_pred             h
Q 026948          228 E  228 (230)
Q Consensus       228 ~  228 (230)
                      .
T Consensus       356 ~  356 (508)
T KOG1840|consen  356 L  356 (508)
T ss_pred             H
Confidence            5

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.22  E-value=3.9e-10  Score=78.13  Aligned_cols=105  Identities=24%  Similarity=0.250  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .++.+|..+...|++++|+..+.+++...+   +......+++.+|.++...|++++|+.+|++++...   ++.+....
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~   77 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPD   77 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccH
Confidence            678899999999999999999999987543   223346788999999999999999999999998764   22233467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++..+|.++..+|++++|..+++++++..++
T Consensus        78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            8999999999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.19  E-value=6.2e-10  Score=89.28  Aligned_cols=112  Identities=24%  Similarity=0.324  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      +..+..-|..|...+++++|.++|.++..+..+.++....+.++...+.++.+. ++++|+++|++++.+....++...-
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            334557889999999999999999999999999889888999999999998777 9999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhc
Q 026948          197 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES  229 (230)
Q Consensus       197 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~  229 (230)
                      +.++.++|.+|... |++++|+++|++|+++++.
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~  147 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ  147 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999999998864

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.18  E-value=2.6e-10  Score=74.72  Aligned_cols=98  Identities=27%  Similarity=0.405  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +++.+|..+...|++++|+..++++++..+.      ...++..+|.++...+++++|++++++++...      +....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELD------PDNAK   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------Ccchh
Confidence            4678899999999999999999999986443      34778999999999999999999999998875      44557


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++..+|.++...|++++|..+++++++..+
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            899999999999999999999999987653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.18  E-value=4.6e-10  Score=84.53  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ...+.+...+|.-|+..|++..|...++++++..++      ...++..++.+|...|+.+.|-+.|++|+.+.      
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~------   99 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLA------   99 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC------
Confidence            345567889999999999999999999999996555      88899999999999999999999999999996      


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      |...++++|.|.-.+.+|+|++|..+|++|+.-
T Consensus       100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~  132 (250)
T COG3063         100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD  132 (250)
T ss_pred             CCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence            888999999999999999999999999999873

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.17  E-value=1.5e-09  Score=83.32  Aligned_cols=122  Identities=21%  Similarity=0.314  Sum_probs=80.3

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+.+.++..+.+++...|.                ....+..+|.++...|++++|+.+++++++..+.      ...++
T Consensus        45 ~~~~~A~~~~~~~l~~~p~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~  102 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPD----------------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVL  102 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHH
Confidence            3455555556555554443                2335666777777777777777777777775433      34566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++|.++...|++++|+.++++++...    ..+.....+.++|.++...|++++|..+++++++..+
T Consensus       103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       103 NNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            777777777777777777777776532    1233455677777777777777777777777776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=5.4e-11  Score=101.03  Aligned_cols=98  Identities=20%  Similarity=0.259  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ++++.-+|.-+..+..||+|..+|++|+.+.++      ..++++++|.+|.++++++.|.-+|++|+++.      |..
T Consensus       455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------P~n  522 (638)
T KOG1126|consen  455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPR------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN------PSN  522 (638)
T ss_pred             chhhhhcCChhhhhHHHHhHHHHHHhhhcCCch------hhHHHHhhhhheeccchhhHHHHHHHhhhcCC------ccc
Confidence            334444555555555566666666666554333      66677777777777777777777777777775      556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ......+|..+.++|+.|+|+..|++|+.+
T Consensus       523 svi~~~~g~~~~~~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  523 SVILCHIGRIQHQLKRKDKALQLYEKAIHL  552 (638)
T ss_pred             hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence            666777777777777777777777777654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.15  E-value=6.4e-10  Score=102.12  Aligned_cols=99  Identities=15%  Similarity=0.214  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..+..+|.++...|++++|+..|.+++.+.+.      ...++.++|.++...|++++|++.|++++++.      |..+
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~------P~~~  677 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGL------PDDP  677 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCH
Confidence            46788999999999999999999999996655      67899999999999999999999999999986      8889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++.++|.++..+|++++|+.+|+++++..+
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999998654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.14  E-value=1e-08  Score=74.06  Aligned_cols=99  Identities=26%  Similarity=0.298  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ...+.+.+|..++..|++++|...|++++.-.   .+......+...++.++...|+|++|+..++..       .+.+.
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~  116 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEAF  116 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcch
Confidence            45578889999999999999999999988832   455667788999999999999999999999662       13355


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      .+..+..+|++|...|++++|+..|++|+
T Consensus       117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  117 KALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            67788899999999999999999999985

>PRK12370 invasion protein regulator; Provisional

Probab=99.13  E-value=9.9e-10  Score=96.09  Aligned_cols=116  Identities=15%  Similarity=-0.038  Sum_probs=82.9

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      ...++..+++++...|.                ...++..+|.++...|++++|+..|++++++.++      .+.+++.
T Consensus       320 ~~~A~~~~~~Al~ldP~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~  377 (553)
T PRK12370        320 MIKAKEHAIKATELDHN----------------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYY  377 (553)
T ss_pred             HHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence            34555566666666554                3446677788888888888888888888886555      5667788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      +|.++...|++++|+..+++++++.      |.....+..++.++...|++++|+..+++++..
T Consensus       378 lg~~l~~~G~~~eAi~~~~~Al~l~------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        378 YGWNLFMAGQLEEALQTINECLKLD------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            8888888888888888888888775      444444455555566677777777777776654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.13  E-value=7.1e-10  Score=79.96  Aligned_cols=109  Identities=9%  Similarity=0.025  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +......++.+.++..+++++...|.                ...++..+|.++...|++++|+..|.+++.+.+.    
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----   90 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPW----------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS----   90 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----
Confidence            44444555677788888888877765                5668899999999999999999999999996555    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  210 (230)
                        .+.+++++|.++...|++++|+..|++++.+.      |..+..+.+.|.+...+
T Consensus        91 --~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~------p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         91 --HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS------YADASWSEIRQNAQIMV  139 (144)
T ss_pred             --CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHH
Confidence              78899999999999999999999999999986      77888888888876544

>PRK12370 invasion protein regulator; Provisional

Probab=99.12  E-value=7.7e-10  Score=96.79  Aligned_cols=119  Identities=16%  Similarity=0.079  Sum_probs=98.7

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR---------NQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      .+.++..+.+++...|.                .+.++..+|.+|..         .+++++|...+++++++.+.    
T Consensus       277 ~~~A~~~~~~Al~ldP~----------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~----  336 (553)
T PRK12370        277 LQQALKLLTQCVNMSPN----------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN----  336 (553)
T ss_pred             HHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC----
Confidence            45666677777776665                34456667766652         34589999999999996655    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                        ...++..+|.++...|++++|+..|++++++.      |..+.+++.+|.++...|++++|+.++++++++.+.
T Consensus       337 --~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        337 --NPQALGLLGLINTIHSEYIVGSLLFKQANLLS------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence              67888999999999999999999999999996      888899999999999999999999999999987543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.11  E-value=3.4e-09  Score=85.65  Aligned_cols=128  Identities=15%  Similarity=0.068  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      ..+.+......++.+.++..|.+++...|.                ...+++.+|..+...|++++|+..|++++++.++
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  130 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPD----------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT  130 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            444455555555777788888888887776                4568899999999999999999999999997655


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                            ...++.++|.++...|++++|++.|+++++..      |..+.. ..........+++++|+..+++++..
T Consensus       131 ------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~------P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        131 ------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD------PNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh
Confidence                  67789999999999999999999999999875      433321 11122345678999999999877643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.10  E-value=1.7e-10  Score=96.81  Aligned_cols=102  Identities=20%  Similarity=0.189  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      +......+|.+|+..|+|++|+++|+.||.      ..+.....++.||..+....+..+||..|++|+++.      |.
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~  496 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PG  496 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CC
Confidence            445677899999999999999999999999      444488889999999999999999999999999996      99


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ...+.+|||.++..+|.|++|.++|-.||.+.+.
T Consensus       497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999987653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.10  E-value=7.2e-09  Score=80.82  Aligned_cols=141  Identities=14%  Similarity=0.102  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+...+.......+.+.++..+.+.+...|.           +  .....+++.+|.+++..|++++|+..|+++++..+
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----------~--~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p  101 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEALESRYPF-----------S--PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP  101 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------c--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence            4445555555666777788888887777664           1  11334678999999999999999999999999766


Q ss_pred             hcCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhCCcccHHH--------------HHHHHHHH
Q 026948          149 NVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYSGSTE--------------AYGAIADC  206 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~--------~~~~~Ai~~~~~al~~~~~~~~~~~~~~--------------~~~~lg~~  206 (230)
                      +..   ....+++.+|.++...        |++++|++.|++++.....   .+....              ....+|..
T Consensus       102 ~~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302       102 NHP---DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN---SEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             CCC---chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            522   2345788899999876        8899999999999877522   111111              12478999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhh
Q 026948          207 YTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       207 y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      |...|++++|+..|+++++.++
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p  197 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYP  197 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCC
Confidence            9999999999999999998764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.07  E-value=2.4e-09  Score=95.33  Aligned_cols=94  Identities=15%  Similarity=0.191  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhCCCHHH----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          119 SRLKTGKNFLRNQDLEK----AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~----A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ++..+|..+...|++++    |+..|++++++.+.      ...++.++|.++...|++++|+.++++++.+.      |
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------P  315 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLATH------P  315 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C
Confidence            33444555555555443    44444444443322      33444444444444455555555444444442      3


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      ..+.++.++|.++...|++++|+..|++++
T Consensus       316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        316 DLPYVRAMYARALRQVGQYTAASDEFVQLA  345 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            334444444444444444444444444444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.07  E-value=3.2e-09  Score=100.31  Aligned_cols=125  Identities=14%  Similarity=0.154  Sum_probs=101.7

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH------
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------  155 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~------  155 (230)
                      +.+.++..+++++...|.                ...++..+|.+|..+|++++|+.+|+++++..+.......      
T Consensus       284 ~~~~A~~~l~~aL~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPK----------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence            556677777777776654                3457889999999999999999999999997765332110      


Q ss_pred             --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 --EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 --~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                        .......+|.++...|++++|+..|++++++.      |....++..+|.++...|++++|+.+|++++++.+
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence              12234566889999999999999999999985      67788999999999999999999999999998754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.07  E-value=3.3e-09  Score=94.09  Aligned_cols=119  Identities=13%  Similarity=0.072  Sum_probs=100.4

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+++...+...+...|.                ...+...++.++.+.+++++|+..+++++...+.      ...+++
T Consensus       101 ~~~ea~~~l~~~~~~~Pd----------------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~  158 (694)
T PRK15179        101 RSDEGLAVWRGIHQRFPD----------------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREIL  158 (694)
T ss_pred             CcHHHHHHHHHHHhhCCC----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHH
Confidence            556666667777777766                5667888899999999999999999999985444      888899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+|.++.+.|+|++|++.|++++.-.      |+.+.++.++|.++...|+.++|...|++|++...
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQH------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999998732      67789999999999999999999999999988653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.07  E-value=6.9e-10  Score=69.51  Aligned_cols=65  Identities=28%  Similarity=0.437  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQIS  187 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~Ai~~~~~al~~~  187 (230)
                      +..+..+|.+++..|++++|+.+|.+++++.+.      ...+++++|.++..+| ++++|+.++++++++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            457889999999999999999999999997655      7889999999999999 7999999999999874

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.7e-09  Score=86.56  Aligned_cols=108  Identities=16%  Similarity=0.217  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---C------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---D------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      .+...-..|+.|++.|+|..|...|++++.......   +      ......++.|++.++.++++|.+|+.++.++|.+
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            344455789999999999999999999998776321   1      1113456999999999999999999999999998


Q ss_pred             HHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       187 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .      +.+..+++..|.++..+|+|+.|+..|++++++-+.
T Consensus       287 ~------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  287 D------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             C------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence            6      888999999999999999999999999999987654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.03  E-value=5.7e-09  Score=93.03  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ...++..+|.++..+|++++|+.++++++++.+.      ...++.++|.++...|++++|+..|++++...      |.
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~  350 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLAREK------GV  350 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cc
Confidence            4557888999999999999999999999996554      56778899999999999999999999998874      55


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ....+..+|.++...|++++|+..|+++++..+
T Consensus       351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            566777789999999999999999999998754

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.02  E-value=6e-09  Score=83.43  Aligned_cols=136  Identities=24%  Similarity=0.280  Sum_probs=119.8

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-C---hHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-D---PIEEK  157 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~---~~~~~  157 (230)
                      .++..++.+++++.++..          .+|..-+..++..+|..|-...|+++|..+..+|.++..+.+ +   .....
T Consensus       137 ~fq~~Lesfe~A~~~A~~----------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  137 VFQKALESFEKALRYAHN----------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             HHHHHHHHHHHHHHHhhc----------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            567777778888777766          466667777899999999999999999999999999999876 2   22356


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+++.++..++.+|+...|.++++++.++....+|.+..+.+..-+|++|...|+.+.|..-|++|....
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999999999999999999999999999999999998754

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=1.5e-09  Score=92.50  Aligned_cols=100  Identities=14%  Similarity=0.145  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ...+++.+|.+|.++++++.|..+|++|+++.+.      .......+|.++.+.|+.++|+.+|++|+.+.      +.
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld------~k  555 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD------PK  555 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC------CC
Confidence            6678999999999999999999999999996555      77788899999999999999999999998775      55


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+-+.+..|.++..+++|++|...+++.-++.
T Consensus       556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v  587 (638)
T KOG1126|consen  556 NPLCKYHRASILFSLGRYVEALQELEELKELV  587 (638)
T ss_pred             CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence            55666667777777777777777666655443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.01  E-value=2.7e-08  Score=83.24  Aligned_cols=106  Identities=18%  Similarity=0.180  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....+..+|.+|...|++++|...|.++++.      .+....++..++.++...|++++|++.++++++.... .....
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~  178 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVE  178 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHH
Confidence            3456778888888888888888888888763      2235567888888888888888888888887765311 00112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ....+..+|.++...|++++|+.+|+++++..+
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  211 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAADP  211 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence            344677888888999999999999999887654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.00  E-value=1.6e-09  Score=66.95  Aligned_cols=62  Identities=23%  Similarity=0.360  Sum_probs=49.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|..+...|+|++|++.|+++++..      |....+++.+|.++..+|++++|+.+|+++++..++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            56778888888888888888887764      778888888888888888888888888888877654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.98  E-value=6.2e-08  Score=81.04  Aligned_cols=94  Identities=24%  Similarity=0.286  Sum_probs=46.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 026948          121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  200 (230)
Q Consensus       121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  200 (230)
                      ..+|..+...|++++|+.+++++++..+.      ...++..+|.++...|++++|++++++++...     +.....++
T Consensus       184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~  252 (389)
T PRK11788        184 CELAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQD-----PEYLSEVL  252 (389)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----hhhHHHHH
Confidence            34555555555555555555555553222      23344555555555555555555555554432     11122334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          201 GAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       201 ~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ..++.+|...|++++|...++++++
T Consensus       253 ~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        253 PKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555555555555555554444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.96  E-value=2e-08  Score=91.73  Aligned_cols=62  Identities=27%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ++..+|.++...|++++|++.+++++...      |....++..+|.++...|++++|...|++++..
T Consensus       161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  222 (899)
T TIGR02917       161 AKLGLAQLALAENRFDEARALIDEVLTAD------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL  222 (899)
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            34444444444444444444444444332      334445555555555555555555555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.96  E-value=1e-08  Score=84.90  Aligned_cols=114  Identities=12%  Similarity=0.179  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +..++.......+++.++..|.+++...+.                ...+++.+|.+|...|++++|+..+.+++.+.+.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            445566666667888899999999988776                4557889999999999999999999999997655


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  211 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  211 (230)
                            ...+++.+|.++...|+|++|+.+|++++.+.      |........++.|...+.
T Consensus        69 ------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         69 ------LAKAYLRKGTACMKLEEYQTAKAALEKGASLA------PGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHH
Confidence                  67889999999999999999999999999986      777788888888876663

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.94  E-value=2.1e-08  Score=77.82  Aligned_cols=103  Identities=19%  Similarity=0.228  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      .++.|.-++..|+|..|...|...++-+   ++....+.++++||.+++.+|+|++|...|..+++   ..++.+.-+++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y---P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda  217 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY---PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA  217 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence            7889999999999999999999988844   44555788999999999999999999999999765   45666777899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++.+|.+...+|+.++|...|++.++.++
T Consensus       218 llKlg~~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         218 LLKLGVSLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999998775

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=5.4e-09  Score=84.82  Aligned_cols=135  Identities=21%  Similarity=0.251  Sum_probs=110.1

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      ..-..++..+++++...|.-.....    .--.......+-..|.-.+..|+|.+|.+.|..++.+.+.  +....+..|
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~----~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~naklY  290 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKS----ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNAKLY  290 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHh----HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhHHHH
Confidence            3456677788888887775100000    0111224455667899999999999999999999999888  666688899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .|.+.+..+.|+.++|+..++.++++.      +....++...|.|+..++++++|.++|+++++.-
T Consensus       291 ~nra~v~~rLgrl~eaisdc~~Al~iD------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  291 GNRALVNIRLGRLREAISDCNEALKID------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHhHhhhcccCCchhhhhhhhhhhhcC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999996      7789999999999999999999999999998754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.93  E-value=2e-08  Score=95.02  Aligned_cols=125  Identities=14%  Similarity=0.181  Sum_probs=97.4

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH------
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------  155 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~------  155 (230)
                      +.+.++..|++++...|.                ...++..+|.++...|++++|+.+|++++++.+.......      
T Consensus       366 ~~~eA~~~~~~Al~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        366 NLAQAERLYQQARQVDNT----------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            445566666666666554                3457888999999999999999999999986554211000      


Q ss_pred             ------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948          156 ------------------------------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  205 (230)
Q Consensus       156 ------------------------------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~  205 (230)
                                                    ....+..+|.++...|++++|++.|++++++.      |..+.+++.+|.
T Consensus       430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~------P~~~~~~~~LA~  503 (1157)
T PRK11447        430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD------PGSVWLTYRLAQ  503 (1157)
T ss_pred             HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Confidence                                          01223456778888999999999999999886      777889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhh
Q 026948          206 CYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       206 ~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +|...|++++|+..++++++..+
T Consensus       504 ~~~~~G~~~~A~~~l~~al~~~P  526 (1157)
T PRK11447        504 DLRQAGQRSQADALMRRLAQQKP  526 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999987654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.93  E-value=1.6e-08  Score=72.92  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=87.7

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      +-+.......+..|..++..|++++|...|+-...+..      ...+...+||.++..+++|++|++.|-.|..+.   
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---  101 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---  101 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            44455677888999999999999999999986665322      256678999999999999999999999998875   


Q ss_pred             CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       191 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                         +.++...+..|.||..+|+.++|+.+|+.+++.
T Consensus       102 ---~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        102 ---KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             ---cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence               344556888999999999999999999999874

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.93  E-value=2.8e-08  Score=91.54  Aligned_cols=95  Identities=12%  Similarity=0.133  Sum_probs=81.5

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  201 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  201 (230)
                      .++......|++++|+..|++++++.+      . ..++.++|.++.+.|++++|+..|++++.+.      |..+.++.
T Consensus       581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P------~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------Pd~~~a~~  647 (987)
T PRK09782        581 WLHAQRYIPGQPELALNDLTRSLNIAP------S-ANAYVARATIYRQRHNVPAAVSDLRAALELE------PNNSNYQA  647 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence            344555566999999999999988543      2 4678999999999999999999999999986      88889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          202 AIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       202 ~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++|.++...|++++|+..|+++++..+.
T Consensus       648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        648 ALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999987653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.93  E-value=3.6e-08  Score=76.85  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..++.+|..++..|++++|+..+++++...+.   .+....+++.+|.++...|++++|+..|+++++...   +.+.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~  105 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPD  105 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCc
Confidence            4557889999999999999999999999885543   334557889999999999999999999999987752   3344


Q ss_pred             HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTEL--------GDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~~  229 (230)
                      ...+++.+|.++...        |++++|+..|++++...+.
T Consensus       106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302       106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            456899999999887        8999999999999886653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.90  E-value=2.6e-08  Score=90.94  Aligned_cols=98  Identities=15%  Similarity=0.236  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ..+++.+|.+|...|++++|+..|+++++..+.      ...++.++|.++...|+ .+|+.++++++...      |..
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~------~~~  836 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKLA------PNI  836 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC------CCC
Confidence            346677788888888888888888887775433      44556666666666666 66666666666553      444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +..+..+|.++...|++++|..+|+++++..
T Consensus       837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       837 PAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            5566666777777777777777777766644

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.90  E-value=1.6e-07  Score=65.14  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +.++.|..+...|+.++|+.+|++++..   ..+......++.++|..+...|++++|+..+++++.-   .++++....
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~   76 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAA   76 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHH
Confidence            5788999999999999999999999883   1234446789999999999999999999999998754   234444667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ....++.+....|++++|+..+-.++.
T Consensus        77 l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   77 LRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            778899999999999999998877654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=1.1e-08  Score=84.79  Aligned_cols=119  Identities=21%  Similarity=0.245  Sum_probs=102.1

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+..+..+.++.+..|.                +..+++++|.+++-.++|++|+..|++++.+.++      ...++.
T Consensus       375 ~~~~~~~~F~~A~~ldp~----------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~i  432 (606)
T KOG0547|consen  375 QSEKMWKDFNKAEDLDPE----------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYI  432 (606)
T ss_pred             ccHHHHHHHHHHHhcCCC----------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHH
Confidence            344445555555555554                4447899999999999999999999999997666      888999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++...++++.+++++..|+.+.+-.      |..+++|...|.++..++++++|.+.|++|+.+-+
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkkF------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKKF------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            99999999999999999999998876      88899999999999999999999999999998654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.89  E-value=5.6e-08  Score=86.41  Aligned_cols=98  Identities=11%  Similarity=0.111  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+.++..+|.+....|++++|...++.++++++.      ...+..+++.++.+.+++++|+..+++++...      |.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------p~  152 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------SS  152 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------CC
Confidence            4668899999999999999999999999997766      88999999999999999999999999999986      88


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .+..++.+|.+..++|+|++|+..|++++.
T Consensus       153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        153 SAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            999999999999999999999999999996

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.89  E-value=1.3e-07  Score=72.73  Aligned_cols=95  Identities=24%  Similarity=0.278  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+...|......|+|..|+..+.++..+.+.      ...++..+|.+|-+.|++++|..-|.+++++.      +..+.
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~------~~~p~  169 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEARRAYRQALELA------PNEPS  169 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc------cCCch
Confidence            3434677777888888888888888875444      67778888888888888888888888888876      66677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ...|+|..|...||++.|..++..+..
T Consensus       170 ~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         170 IANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             hhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence            788888888888888888887777654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=4.9e-08  Score=81.62  Aligned_cols=100  Identities=15%  Similarity=0.241  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      +......|+.++..|+|..|+.+|.++++..      +..+..|.|.+.||...|++..|+..+++++++.      |..
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~  425 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNF  425 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chH
Confidence            3345567999999999999999999999944      4488999999999999999999999999999995      888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+|..-|.++..+.+|++|.+.|+++++.-+
T Consensus       426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  426 IKAYLRKGAALRAMKEYDKALEAYQEALELDP  457 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999998643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=2.1e-08  Score=84.23  Aligned_cols=126  Identities=21%  Similarity=0.298  Sum_probs=101.9

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      ..++++..|..+-...+..                -.-.+.+|.-|...+++..|..+|.+|+.+++.      .+..+.
T Consensus       361 EhdQAmaaY~tAarl~~G~----------------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~~  418 (611)
T KOG1173|consen  361 EHDQAMAAYFTAARLMPGC----------------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVLH  418 (611)
T ss_pred             hHHHHHHHHHHHHHhccCC----------------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC------cchhhh
Confidence            4566666666666655540                113557899999999999999999999998877      677889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|.+.+..+.|.+|..+|++++...+...... -....+.|||.+|.+++.+++|+.+|+++|...+.
T Consensus       419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999996665544322 35567999999999999999999999999987654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.84  E-value=1.8e-08  Score=62.17  Aligned_cols=61  Identities=26%  Similarity=0.439  Sum_probs=54.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.+|..++..|++++|+..|+++++      ..+....+++.+|.++..+|++++|+.+|+++++..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALK------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHC------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3579999999999999999999999      445589999999999999999999999999999875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=1.5e-08  Score=83.38  Aligned_cols=108  Identities=22%  Similarity=0.231  Sum_probs=95.3

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      ..++.++.++.+.|.+-+..|++++|.+.|.+++.      +...-..+++++|..+-.+|+.++|+++|-+...+.   
T Consensus       484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il---  554 (840)
T KOG2003|consen  484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL---  554 (840)
T ss_pred             cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---
Confidence            34455667788899999999999999999999998      666678899999999999999999999999988876   


Q ss_pred             CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 026948          191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  230 (230)
Q Consensus       191 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  230 (230)
                         ...+.+++.++.+|+.+.+..+|++++.++..+.++|
T Consensus       555 ---~nn~evl~qianiye~led~aqaie~~~q~~slip~d  591 (840)
T KOG2003|consen  555 ---LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND  591 (840)
T ss_pred             ---HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence               5678999999999999999999999999998776543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.83  E-value=9.3e-08  Score=73.48  Aligned_cols=121  Identities=19%  Similarity=0.144  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC
Q 026948           73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD  152 (230)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~  152 (230)
                      ++......+++..++..++++....|.                +...+..+|.+|.+.|+++.|...|.+++++..+   
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~----------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---  166 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPT----------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---  166 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCC----------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---
Confidence            455555556788888888888888776                5668999999999999999999999999998887   


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                         .+.+..|+|..+.-.||++.|..++..+....      +....+-.|++.+...+|+++.|...-.
T Consensus       167 ---~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~------~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         167 ---EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP------AADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ---CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC------CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence               77889999999999999999999999986553      5577899999999999999999987543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=9.7e-08  Score=70.75  Aligned_cols=106  Identities=23%  Similarity=0.275  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..+-.-|+-++..|+|.+|..-|..|+.+++.+.. ......|.|.|.+...++.++.||+.+.++|++.      |.
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------pt  166 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELN------PT  166 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------ch
Confidence            4445567799999999999999999999999887544 4456678899999999999999999999999997      77


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++...+.+|.++.+|++|++.|.+.+..-+
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence            888999999999999999999999999987643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=7.8e-08  Score=75.56  Aligned_cols=102  Identities=20%  Similarity=0.212  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCC
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      ++.-+..+|.+|+.+|+++.|...|.+++++.++      ++..+..+|.+++.+   .+-.++...+++++..+     
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-----  223 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-----  223 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-----
Confidence            5567999999999999999999999999998877      677778888887654   45778999999999985     


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                       +....+...+|..+.+.|+|.+|...+++.++..+.
T Consensus       224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             -CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence             888999999999999999999999999999987654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.81  E-value=2.7e-08  Score=79.75  Aligned_cols=101  Identities=24%  Similarity=0.340  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....+...|.++...|+.++|+..|++++++.+.      ...+...++.++...|+++++.+.++...+..      +.
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------~~  212 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------PD  212 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------cC
Confidence            4556778999999999999999999999997776      55566667777777777777666666654443      22


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+..+..+|.+|..+|++++|+.+|++++...+
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhccccccccccccccccccccc
Confidence            334566677777777777777777777776544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.80  E-value=2.8e-08  Score=79.59  Aligned_cols=121  Identities=20%  Similarity=0.244  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948           79 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK  158 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~  158 (230)
                      ..++...++..+++++...|.                +..+...++..+...|+++++...+....+..+.      .+.
T Consensus       158 ~~G~~~~A~~~~~~al~~~P~----------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~  215 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALELDPD----------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPD  215 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH-TT-----------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCC
T ss_pred             HcCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHH
Confidence            334678888888999988876                4446778899999999999988887777665433      344


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+..+|.++...|++++|+.+|+++++..      |.++..+..+|.++...|++++|...+++++...
T Consensus       216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  216 LWDALAAAYLQLGRYEEALEYLEKALKLN------PDDPLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             HCHHHHHHHHHHT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHT-------------------
T ss_pred             HHHHHHHHhcccccccccccccccccccc------cccccccccccccccccccccccccccccccccc
Confidence            56788999999999999999999998875      7788999999999999999999999999988653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.78  E-value=3.8e-07  Score=63.06  Aligned_cols=101  Identities=20%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..+-..|......|+.+.|++.|.+++.+.++      .+.+|+|.+..++-+|+.++|++.+++++++...  ....-.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtac  115 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTAC  115 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHH
Confidence            34556788889999999999999999998877      7889999999999999999999999999988622  223345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .++...|.+|..+|+-+.|...|+.|-++
T Consensus       116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  116 QAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            67899999999999999999999988764

>PLN02789 farnesyltranstransferase

Probab=98.78  E-value=3.1e-07  Score=74.70  Aligned_cols=118  Identities=11%  Similarity=0.088  Sum_probs=88.6

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      +.+.++..+.+++...|.                ...++..+|.++...| ++++++..+.++++..++      ...++
T Consensus        52 ~serAL~lt~~aI~lnP~----------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW  109 (320)
T PLN02789         52 RSPRALDLTADVIRLNPG----------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIW  109 (320)
T ss_pred             CCHHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHh
Confidence            556666666667766655                5557778888888877 578888888888875444      56677


Q ss_pred             HHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          161 RGLGASLQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       161 ~~lg~~~~~~~~~--~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++.+.+....|++  +++++++++++++.      +....+|...|.++..+|++++|+++++++++.-
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~d------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d  172 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSLD------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED  172 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence            7777777777764  67788888888775      6778888888888888888888888888888753

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.77  E-value=2.6e-07  Score=66.40  Aligned_cols=102  Identities=12%  Similarity=0.065  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 026948           64 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA  143 (230)
Q Consensus        64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  143 (230)
                      +..++.+-...-.+...++.+.+..-|+....+.+.                ...-++++|.++...|+|.+|++.|.++
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----------------SFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455556666666666667777777777777777765                5667899999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       144 l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.+.++      .++.++++|.+++..|+.+.|.+.|+.++...
T Consensus        96 ~~L~~d------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         96 AQIKID------APQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HhcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            997665      78899999999999999999999999999987

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.8e-07  Score=76.14  Aligned_cols=149  Identities=17%  Similarity=0.238  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 026948           65 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL  144 (230)
Q Consensus        65 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  144 (230)
                      .........++.+....++..+...|.+++.+..........+.. .-......++++++.+|.++++|..|+.+.+++|
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~-~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQK-KAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHH-HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            333466777888888889999999999988887642111111100 0111234467799999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 026948          145 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKY  223 (230)
Q Consensus       145 ~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~a  223 (230)
                      ++.+.      +..+++..|.++...++|+.|+..|++++++.      |.+..+...+..+..+..++.+. .+.|.+.
T Consensus       285 e~~~~------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~------P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  285 ELDPN------NVKALYRRGQALLALGEYDLARDDFQKALKLE------PSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             hcCCC------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            96555      89999999999999999999999999999996      77778888888887766665544 6777776


Q ss_pred             HHh
Q 026948          224 ISR  226 (230)
Q Consensus       224 l~~  226 (230)
                      +..
T Consensus       353 F~k  355 (397)
T KOG0543|consen  353 FAK  355 (397)
T ss_pred             hhc
Confidence            654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.75  E-value=2.4e-07  Score=84.24  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ++..+|..+...|++++|+..+++++++.+.      ...+...+|.++...|++++|+..++++++..      |....
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~------P~~~~  118 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQYDEALVKAKQLVSGA------PDKAN  118 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH
Confidence            3445555555555555555555555554332      33344455555555555555555555555543      44444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                       +..+|.++...|++++|+..++++++..
T Consensus       119 -~~~la~~l~~~g~~~~Al~~l~~al~~~  146 (765)
T PRK10049        119 -LLALAYVYKRAGRHWDELRAMTQALPRA  146 (765)
T ss_pred             -HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence             5555555555555555555555555543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=4.9e-08  Score=80.92  Aligned_cols=95  Identities=19%  Similarity=0.257  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ..+..+-..|+-++..|+|++|+.+|++|+++.+.      .+..|.|++.+|...|++++-++.+.+++++.      |
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~TkALEl~------P  180 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDCTKALELN------P  180 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC------c
Confidence            34556668999999999999999999999997766      47789999999999999999999999999996      8


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      ..+.++++.+.+++.+|++++|.....
T Consensus       181 ~Y~KAl~RRA~A~E~lg~~~eal~D~t  207 (606)
T KOG0547|consen  181 DYVKALLRRASAHEQLGKFDEALFDVT  207 (606)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence            899999999999999999999987653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.74  E-value=6.7e-08  Score=85.77  Aligned_cols=122  Identities=19%  Similarity=0.181  Sum_probs=103.3

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      ..+.++..|.+.+...|.                ++++-+.+|.++...|++.+|.+.|.+..+-...      ....+.
T Consensus       627 ~~~KAlq~y~kvL~~dpk----------------N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~l  684 (1018)
T KOG2002|consen  627 HQEKALQLYGKVLRNDPK----------------NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWL  684 (1018)
T ss_pred             HHHHHHHHHHHHHhcCcc----------------hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceee
Confidence            345566677777776666                7788899999999999999999999998884432      567789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      |+|+||..+|+|..|++.|+.+++-.-    ......++..||.++...|.+.+|.++..+|+...+.
T Consensus       685 Nlah~~~e~~qy~~AIqmYe~~lkkf~----~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~  748 (1018)
T KOG2002|consen  685 NLAHCYVEQGQYRLAIQMYENCLKKFY----KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS  748 (1018)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999987652    3456789999999999999999999999999987654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.71  E-value=1.6e-07  Score=77.63  Aligned_cols=102  Identities=21%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .......+|.++..+|++++|+..+++++++.+.      ...++..+|.++...|++++|+.++++++.....  +...
T Consensus       113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~  184 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSML  184 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccch
Confidence            4556668899999999999999999999997655      4678899999999999999999999999887532  1122


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ....+..+|.++...|++++|+..|++++.
T Consensus       185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         185 RGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            345678899999999999999999999863

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.69  E-value=1.6e-06  Score=69.44  Aligned_cols=161  Identities=17%  Similarity=0.211  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc------------------CCCCCcccccCccHHHHHHHHHH
Q 026948           62 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVG------------------SRIPEDEVIVDPKKEELLSRLKT  123 (230)
Q Consensus        62 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  123 (230)
                      ..+.++++..+.+.++....+...++..|..+++..|..                  ..+....-.+.-.+.-..+....
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            345667777777778888788888888888888776651                  00111111112222233466788


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIE---------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       124 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~---------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      |.++..+|.+++|...|...+.-.++.+....         ..+.+......+...||+..|+++..+.+++.      |
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~------~  186 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ------P  186 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC------c
Confidence            88888889999998888888875544221111         11223334445566788888888888888886      8


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +.+..+...+.||...|+..+|+...+.+-++.+
T Consensus       187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~  220 (504)
T KOG0624|consen  187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ  220 (504)
T ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence            8888999999999999999999999988876543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.69  E-value=8.2e-07  Score=80.79  Aligned_cols=103  Identities=14%  Similarity=0.003  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ....+...+|..+...|++++|+..+++++...+.      ....+..+|.++...|++++|+..+++++.+.      |
T Consensus       357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~------P  424 (765)
T PRK10049        357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRIDYASVLQARGWPRAAENELKKAEVLE------P  424 (765)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------C
Confidence            34556778899999999999999999999986555      56789999999999999999999999999986      7


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ....+++.+|.++...|++++|...++++++..++
T Consensus       425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            78889999999999999999999999999987654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.69  E-value=1.2e-06  Score=62.05  Aligned_cols=106  Identities=18%  Similarity=0.198  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..++..|...+..|+|++|+..++....   +....+....+...+|.+|+..++|++|+..+++.+++..   ..+...
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~---ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP---~hp~vd   84 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDT---RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP---THPNVD   84 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCCCcc
Confidence            3688899999999999999999988665   5555566778899999999999999999999999988864   455667


Q ss_pred             HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhhhc
Q 026948          198 EAYGAIADCYTELGD---------------LERAARFYDKYISRLES  229 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~---------------~~~A~~~~~~al~~~~~  229 (230)
                      .+++..|.++..+.+               ..+|...|++.++.+++
T Consensus        85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~  131 (142)
T PF13512_consen   85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN  131 (142)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence            899999999999887               88999999999988764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.67  E-value=8.8e-07  Score=67.62  Aligned_cols=108  Identities=18%  Similarity=0.174  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....++..|..++..|+|.+|+..|++....++.   .+....+...+|.+++..|+|++|+..+++.++..   +..+.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---P~~~~   77 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---PNSPK   77 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-TT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcc
Confidence            4457889999999999999999999998886554   44467788999999999999999999999987664   45566


Q ss_pred             HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELG-----------DLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~  229 (230)
                      ...+++.+|.++..+.           ...+|+..|+..++.+++
T Consensus        78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            7889999999976653           345888899988887764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=7.7e-08  Score=79.88  Aligned_cols=70  Identities=13%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK---KAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~---~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      ..+.....+++++|..|+..|+|++|+..|+++++      ..+...   .+++|+|.+|..+|++++|+.++++|+++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35667778888888888888888888888888888      344444   35888888888888888888888888876

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=1e-07  Score=75.58  Aligned_cols=124  Identities=12%  Similarity=0.126  Sum_probs=73.6

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----------
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----------  150 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------  150 (230)
                      +.+.++..+...++..|.                ++..+..++.++..++++++|+++|+.+++..+..           
T Consensus       271 QP~~AL~~~~~gld~fP~----------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y  334 (478)
T KOG1129|consen  271 QPERALLVIGEGLDSFPF----------------DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY  334 (478)
T ss_pred             cHHHHHHHHhhhhhcCCc----------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence            556666677777776665                56566677888888888888888888877754330           


Q ss_pred             --CChHH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCH
Q 026948          151 --KDPIE---------------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL  213 (230)
Q Consensus       151 --~~~~~---------------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~  213 (230)
                        ++.+.               .+..+.|+|.|++--++++-++..|++|+....+   +..-+++|+|+|.+.-..||+
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~  411 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDF  411 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccch
Confidence              11111               2334555566666566666666666665554421   122345566666666666666


Q ss_pred             HHHHHHHHHHH
Q 026948          214 ERAARFYDKYI  224 (230)
Q Consensus       214 ~~A~~~~~~al  224 (230)
                      ..|..+|+-++
T Consensus       412 nlA~rcfrlaL  422 (478)
T KOG1129|consen  412 NLAKRCFRLAL  422 (478)
T ss_pred             HHHHHHHHHHh
Confidence            66666655554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=2.2e-07  Score=78.45  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=96.7

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      ..++.+++.|+.++..-|.                +...++.+|-.+....+..+|+..|++|+++-+.      ..++.
T Consensus       444 ~efdraiDcf~~AL~v~Pn----------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~------yVR~R  501 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVKPN----------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG------YVRVR  501 (579)
T ss_pred             hHHHHHHHHHHHHHhcCCc----------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC------eeeee
Confidence            3667778888888877666                6668999999999999999999999999997666      89999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc----HHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG----STEAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~----~~~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                      +|||..+..+|.|++|+++|..||.+.++......    ...+|-.|-.+...+++.|.+...+
T Consensus       502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            99999999999999999999999999887433222    2356777777888888888665544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.60  E-value=1.7e-06  Score=64.27  Aligned_cols=75  Identities=19%  Similarity=0.237  Sum_probs=64.3

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +.....+.+++++|..+...|++++|+.+|++++.....   .+....++.++|.++...|++++|+.+|++++++.+
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP  103 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            455667888999999999999999999999999987532   223467899999999999999999999999998654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.59  E-value=2.3e-07  Score=58.53  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=41.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          164 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       164 g~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..++...++|++|++++++++.+.      |..+..+...|.++..+|++++|...++++++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            356667777777777777777764      55666777777777777777777777777776554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.59  E-value=3.3e-06  Score=66.18  Aligned_cols=105  Identities=11%  Similarity=0.010  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ..+..|..++..|+|++|+..|++.+...+   +.+....+...+|.++++.++|++|+.++++.++..   ++.+....
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~~~~~~  107 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDY  107 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCCCchHH
Confidence            577889999999999999999999888554   445667778999999999999999999999988775   45667788


Q ss_pred             HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhhhc
Q 026948          199 AYGAIADCYTELG---------------D---LERAARFYDKYISRLES  229 (230)
Q Consensus       199 ~~~~lg~~y~~~g---------------~---~~~A~~~~~~al~~~~~  229 (230)
                      +++.+|.++..++               |   ..+|+..+++.++.+++
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~  156 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN  156 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence            9999999976554               1   25677888888887754

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.9e-06  Score=65.39  Aligned_cols=110  Identities=14%  Similarity=0.157  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+..-|+.|...++++.|-..|.++-++..+.+...+.+..|...+++|.+. ++.+|+.++++++++....+...--+.
T Consensus        36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk  114 (288)
T KOG1586|consen   36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAK  114 (288)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            4446778888889999999999999999999888888888888888887655 999999999999999987776666666


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhc
Q 026948          199 AYGAIADCYTEL-GDLERAARFYDKYISRLES  229 (230)
Q Consensus       199 ~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~  229 (230)
                      -+..+|.+|+.- .++++|+.+|+++-+++..
T Consensus       115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen  115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            788999999865 9999999999999988753

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.59  E-value=2.2e-07  Score=74.20  Aligned_cols=96  Identities=11%  Similarity=0.156  Sum_probs=86.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      .-..|+.|+.+|.|++|+++|.+++.+++.      ++..+.|.+.+|++++.|..|...+..|+.+.      .....+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------~~Y~KA  167 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIALD------KLYVKA  167 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------HHHHHH
Confidence            346899999999999999999999996654      66778899999999999999999999999997      567889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      |...|.+...+|+..+|.+.|+.+|++=
T Consensus       168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  168 YSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            9999999999999999999999998753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.59  E-value=4.9e-07  Score=64.13  Aligned_cols=78  Identities=23%  Similarity=0.294  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHH
Q 026948          139 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  218 (230)
Q Consensus       139 ~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  218 (230)
                      .+++++..      .+....+...+|..+...|++++|++.+++++...      |....++.++|.++...|++++|..
T Consensus         5 ~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~   72 (135)
T TIGR02552         5 TLKDLLGL------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD------PYNSRYWLGLAACCQMLKEYEEAID   72 (135)
T ss_pred             hHHHHHcC------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566663      33366788999999999999999999999998875      7788999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 026948          219 FYDKYISRLE  228 (230)
Q Consensus       219 ~~~~al~~~~  228 (230)
                      ++++++...+
T Consensus        73 ~~~~~~~~~p   82 (135)
T TIGR02552        73 AYALAAALDP   82 (135)
T ss_pred             HHHHHHhcCC
Confidence            9999988654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.59  E-value=5.3e-07  Score=58.63  Aligned_cols=80  Identities=21%  Similarity=0.276  Sum_probs=60.1

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+.++..+.+.+...+.             +. +...++.+|.+|+..|+|++|+..+++ .+..+.      ...+.+.
T Consensus         5 y~~Ai~~~~k~~~~~~~-------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l   63 (84)
T PF12895_consen    5 YENAIKYYEKLLELDPT-------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYL   63 (84)
T ss_dssp             HHHHHHHHHHHHHHHCG-------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHH
Confidence            44555666666665552             11 344677799999999999999999998 554443      5677778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 026948          163 LGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      +|.++..+|+|++|++.++++
T Consensus        64 ~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   64 LARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHhcC
Confidence            899999999999999999875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.58  E-value=5.3e-06  Score=65.90  Aligned_cols=101  Identities=20%  Similarity=0.256  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..+..++..+....+.++|...+.+|++..++      -.++-.-+|.+....|+|+.|++.++.+++-+     +..
T Consensus       179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-----~~y  247 (389)
T COG2956         179 IAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDYQKAVEALERVLEQN-----PEY  247 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccchHHHHHHHHHHHHhC-----hHH
Confidence            4445557888888889999999999999996555      77888889999999999999999999987764     356


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+.+...+..||.++|+.++......++.+.+
T Consensus       248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            77888899999999999999999998887754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.58  E-value=9.3e-07  Score=80.20  Aligned_cols=100  Identities=7%  Similarity=0.066  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ......+|.++..+|++++|++.|+++++..+.      ...++..++..+...+++++|++.++++....      +..
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d------p~~  169 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAERD------PTV  169 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC------cch
Confidence            445666688999999999999999999986554      45666788889999999999999999987664      332


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                       ..+..++.++...+++.+|++.|+++++..+.
T Consensus       170 -~~~l~layL~~~~~~~~~AL~~~ekll~~~P~  201 (822)
T PRK14574        170 -QNYMTLSYLNRATDRNYDALQASSEAVRLAPT  201 (822)
T ss_pred             -HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence             22344566666677887799999999987654

>TIGR00540 hemY_coli hemY protein

Probab=98.58  E-value=5.7e-06  Score=69.99  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .....|..+..+|+++.|..++.++.+..+.   ..  .......+.++...|++++|...+++.++..      |..+.
T Consensus       120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~---~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~------P~~~~  188 (409)
T TIGR00540       120 NLIKAAEAAQQRGDEARANQHLEEAAELAGN---DN--ILVEIARTRILLAQNELHAARHGVDKLLEMA------PRHKE  188 (409)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH
Confidence            4567789999999999999999999874433   11  1223345888999999999999999998875      77788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ++..++.++...|++++|.+.+++..+.
T Consensus       189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       189 VLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            9999999999999999999999888764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=6.6e-07  Score=71.09  Aligned_cols=109  Identities=18%  Similarity=0.273  Sum_probs=98.7

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      +.+...+..+-.-|+-|+..++|..|+..|.++++  .++.|+...+..|.|.+.+....|+|..|+..+.+++.+.   
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---  149 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---  149 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            45555666677899999999999999999999998  6788999999999999999999999999999999999986   


Q ss_pred             CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       191 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                         |....+++.=+.|..++++++.|..+.+..+.+.
T Consensus       150 ---P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  150 ---PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ---cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence               8889999999999999999999999998887654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.56  E-value=6.3e-07  Score=68.08  Aligned_cols=88  Identities=17%  Similarity=0.223  Sum_probs=76.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH-H
Q 026948          130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY-T  208 (230)
Q Consensus       130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~  208 (230)
                      .++.++++..++++++..+.      ....+..+|.++...|++++|+..|++++++.      |..+..+.++|.++ .
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------P~~~~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQLR------GENAELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence            46678888999999995554      78899999999999999999999999999996      88899999999974 7


Q ss_pred             HcCC--HHHHHHHHHHHHHhhhc
Q 026948          209 ELGD--LERAARFYDKYISRLES  229 (230)
Q Consensus       209 ~~g~--~~~A~~~~~~al~~~~~  229 (230)
                      ..|+  +++|...++++++.-++
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~  142 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDAN  142 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCC
Confidence            7787  59999999999986543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.54  E-value=2.4e-06  Score=75.66  Aligned_cols=137  Identities=18%  Similarity=0.167  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 026948           64 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA  143 (230)
Q Consensus        64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  143 (230)
                      ..++..+..+.+.+...++.+.+..-+...+...|.                ...++..+|.+|.++|+..++......|
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~----------------~~~ay~tL~~IyEqrGd~eK~l~~~llA  199 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR----------------NPIAYYTLGEIYEQRGDIEKALNFWLLA  199 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc----------------chhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence            344667777888888888888888888888887776                5568999999999999999999998877


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  223 (230)
Q Consensus       144 l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  223 (230)
                      -.+.++      ....+..++....++|++++|.-||.+||+..      |......+..+..|.++|++..|...|.+.
T Consensus       200 AHL~p~------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l  267 (895)
T KOG2076|consen  200 AHLNPK------DYELWKRLADLSEQLGNINQARYCYSRAIQAN------PSNWELIYERSSLYQKTGDLKRAMETFLQL  267 (895)
T ss_pred             HhcCCC------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            775544      33667788889999999999999999999986      767888999999999999999999999999


Q ss_pred             HHhhh
Q 026948          224 ISRLE  228 (230)
Q Consensus       224 l~~~~  228 (230)
                      +...+
T Consensus       268 ~~~~p  272 (895)
T KOG2076|consen  268 LQLDP  272 (895)
T ss_pred             HhhCC
Confidence            88654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.54  E-value=1.3e-05  Score=62.95  Aligned_cols=140  Identities=13%  Similarity=0.049  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +-.........++.+.++..|.+.+...|.           .  .....+.+++|.+|+..+++++|+.++++.++..+.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-----------s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-----------G--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------C--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            334455555556777888888888887775           2  223345789999999999999999999999997776


Q ss_pred             cCChHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHhCCcccHHH-------------
Q 026948          150 VKDPIEEKKAARGLGASLQRQG---------------K---YREAIKYHSMVLQISEREGEYSGSTE-------------  198 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~---------------~---~~~Ai~~~~~al~~~~~~~~~~~~~~-------------  198 (230)
                      .+   ....+++.+|.++...+               |   -.+|+..|++.++...   +++...+             
T Consensus       102 ~~---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP---~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        102 HP---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP---NSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             CC---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc---CChhHHHHHHHHHHHHHHHH
Confidence            43   35677888887764443               2   2467778888766543   3332222             


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 -AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 -~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                       --..+|.-|.+.|+|..|+.-++.+++-++
T Consensus       176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp  206 (243)
T PRK10866        176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYP  206 (243)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHCC
Confidence             233478889999999999999999988664

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.53  E-value=1.1e-06  Score=65.00  Aligned_cols=91  Identities=16%  Similarity=0.122  Sum_probs=70.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948          131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  210 (230)
                      ++|..+.+.+.+.++    .........+++++|.++...|++++|+..|++++.+..   +++..+.++.++|.++...
T Consensus        13 ~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~   85 (168)
T CHL00033         13 KTFTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSN   85 (168)
T ss_pred             cccccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHc
Confidence            445555555544332    224444778899999999999999999999999998742   2233567999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q 026948          211 GDLERAARFYDKYISRLE  228 (230)
Q Consensus       211 g~~~~A~~~~~~al~~~~  228 (230)
                      |++++|+.+|++++.+.+
T Consensus        86 g~~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         86 GEHTKALEYYFQALERNP  103 (168)
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999999999999998643

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=4.5e-07  Score=76.01  Aligned_cols=97  Identities=20%  Similarity=0.263  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      .-..|+..+..|+|+.|+.+|.+++.+.+.      +...|.|...+|..+|+|++|+..-.+.+++.      |..+..
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------p~w~kg   72 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRLN------PDWAKG   72 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC------CchhhH
Confidence            345688899999999999999999997655      56678889999999999999999999999996      889999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      |..+|.+...+|+|++|+..|.+.|+.-+
T Consensus        73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d~  101 (539)
T KOG0548|consen   73 YSRKGAALFGLGDYEEAILAYSEGLEKDP  101 (539)
T ss_pred             HHHhHHHHHhcccHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999998643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.51  E-value=4.1e-06  Score=69.74  Aligned_cols=91  Identities=20%  Similarity=0.291  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ....++.++...++-.+|+...+++++..+.      ....+...+..+...++|+.|++..++++.+.      |....
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls------P~~f~  269 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVELS------PSEFE  269 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------chhHH
Confidence            4556889999999999999999999974433      47778888999999999999999999999996      88999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      +|+.|+.+|..+|++++|+...+
T Consensus       270 ~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  270 TWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHh
Confidence            99999999999999999997665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=9.4e-06  Score=64.51  Aligned_cols=101  Identities=13%  Similarity=0.091  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ++-.+-.+|....++++|++...+..++.+. ......+..|+.++..+....+.+.|+..+.+|++.+      +....
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~------~~cvR  215 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD------KKCVR  215 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC------cccee
Confidence            5667788888888888888888777765443 2445578889999999999999999999999999886      66778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      +-..+|+++...|+|++|++.++.+++-
T Consensus       216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQ  243 (389)
T COG2956         216 ASIILGRVELAKGDYQKAVEALERVLEQ  243 (389)
T ss_pred             hhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence            8889999999999999999999998763

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.49  E-value=2e-06  Score=71.12  Aligned_cols=122  Identities=15%  Similarity=0.120  Sum_probs=88.6

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+.+...|.                ...++.. +..+...|++..+.....+++..  ..+..+....+..
T Consensus        58 ~~~~A~~~~~~~l~~~P~----------------~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~  118 (355)
T cd05804          58 DLPKALALLEQLLDDYPR----------------DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLG  118 (355)
T ss_pred             CHHHHHHHHHHHHHHCCC----------------cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHH
Confidence            445566666666666554                1122222 55555556555555555555543  2234455667788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+|.++...|++++|+..+++++++.      |....++..+|.++...|++++|+.++++++...+
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            89999999999999999999999986      66678899999999999999999999999988653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=5.2e-06  Score=61.76  Aligned_cols=125  Identities=17%  Similarity=0.206  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 026948           64 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA  143 (230)
Q Consensus        64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  143 (230)
                      ..+.+++...++.+...+.++.+...|..++...|.           -....+...+.+.|.+...++.++.|++...++
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~-----------~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPS-----------TSTEERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcc-----------ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            455668888899999989999999999999999987           344556667779999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948          144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  211 (230)
Q Consensus       144 l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  211 (230)
                      +++.+.      ...++...+.+|-....|++|++.|++.+...      |..-.+...+.++--...
T Consensus       161 iel~pt------y~kAl~RRAeayek~ek~eealeDyKki~E~d------Ps~~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  161 IELNPT------YEKALERRAEAYEKMEKYEEALEDYKKILESD------PSRREAREAIARLPPKIN  216 (271)
T ss_pred             HhcCch------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC------cchHHHHHHHHhcCHHHH
Confidence            997655      66778888999999999999999999998875      555555555554443333

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=2e-05  Score=59.96  Aligned_cols=109  Identities=13%  Similarity=0.180  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      -+.++...+.+| +.++..+|+++++++++++-..+.-...+..+..+|.+|-.- .++++||.+|+++-+.........
T Consensus        73 aat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s  151 (288)
T KOG1586|consen   73 AATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS  151 (288)
T ss_pred             HHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence            333444445554 556999999999999999998887777788888999998765 999999999999999887665555


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .-..++...+..-..+++|.+|+..|++...
T Consensus       152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667788888888999999999999998765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.47  E-value=1.1e-05  Score=74.75  Aligned_cols=113  Identities=14%  Similarity=0.046  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc--
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY--  193 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~--  193 (230)
                      ...+...+|..+...|++++|...+.+++......++......++.++|.++...|++++|..++++++.+.......  
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            444667889999999999999999999999998877777777889999999999999999999999999988765432  


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +.....+..+|.++...|++++|...+++++....
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            22344577889999999999999999999987643

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.47  E-value=2.5e-06  Score=77.23  Aligned_cols=121  Identities=16%  Similarity=0.125  Sum_probs=93.2

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh------------
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN------------  149 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------  149 (230)
                      +.+.++......+...|.                ....++.+|.++++.++++++...  .++...+.            
T Consensus        46 ~~deai~i~~~~l~~~P~----------------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~  107 (906)
T PRK14720         46 LTDEAKDICEEHLKEHKK----------------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD  107 (906)
T ss_pred             CHHHHHHHHHHHHHhCCc----------------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence            455555555556665555                445677788888888887777654  44443332            


Q ss_pred             -cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          150 -VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       150 -~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                       .++......+++.+|.||-+.|++++|...|++++++.      |..+.+++++|..|... +.++|..++.+|+..+
T Consensus       108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence             12333455799999999999999999999999999996      88899999999999999 9999999999999865

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.45  E-value=3.8e-07  Score=56.64  Aligned_cols=55  Identities=27%  Similarity=0.463  Sum_probs=35.6

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          168 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       168 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...|+|++|++.|++++...      |....++..+|.+|...|++++|...+++++...+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             hhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            35567777777777776664      55666667777777777777777777666655443

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.45  E-value=7.6e-06  Score=60.23  Aligned_cols=124  Identities=14%  Similarity=0.142  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948           79 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK  158 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~  158 (230)
                      ..+..+.......+.++.+|.                 ..-.+.+|......|++.+|...|++++.     +.......
T Consensus        68 q~ldP~R~~Rea~~~~~~ApT-----------------vqnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a  125 (251)
T COG4700          68 QKLDPERHLREATEELAIAPT-----------------VQNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAA  125 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchh-----------------HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHH
Confidence            334445555555556666653                 33566889999999999999999999987     22333456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.++++..+..+++..|...+++..+....    -..++....+|.++..+|.+.+|...|+.+++.++
T Consensus       126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa----~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA----FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhhcCCc----cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            6788999999999999999999997766421    23456788899999999999999999999998765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=8.9e-07  Score=73.24  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=88.7

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      +..-..+++++|..+-.+|+.++|+++|.+.-.+..+      .+..++.++.+|-...+..+||+++-++..+.     
T Consensus       520 dasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~led~aqaie~~~q~~sli-----  588 (840)
T KOG2003|consen  520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIELLMQANSLI-----  588 (840)
T ss_pred             chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----
Confidence            3334557889999999999999999999988877666      78899999999999999999999999998775     


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                       |..+..+..+|..|.+.|+..+|..++-....+++
T Consensus       589 -p~dp~ilskl~dlydqegdksqafq~~ydsyryfp  623 (840)
T KOG2003|consen  589 -PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP  623 (840)
T ss_pred             -CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC
Confidence             77788999999999999998888887765555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.43  E-value=7.7e-07  Score=55.26  Aligned_cols=66  Identities=23%  Similarity=0.297  Sum_probs=54.1

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948          128 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  205 (230)
Q Consensus       128 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~  205 (230)
                      +..|++++|+..|++++...+.      ...+...+|.++...|++++|...+++++...      |..+..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~------~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD------PDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG------TTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCHHHHHHHHhc
Confidence            5689999999999999997665      77888999999999999999999999987765      555555555543

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.43  E-value=0.00013  Score=54.17  Aligned_cols=102  Identities=25%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      -..+.+.++..+...+++++|+..++.++..   ..|.....-+-..++.+...+|.+++|+..+...-       ++..
T Consensus        88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w  157 (207)
T COG2976          88 AVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESW  157 (207)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccH
Confidence            3446678999999999999999999988862   23445566778889999999999999999887632       2233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+..-...|+++...|+.++|+..|++++...
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            44556667999999999999999999999874

>PLN02789 farnesyltranstransferase

Probab=98.43  E-value=6.6e-06  Score=67.02  Aligned_cols=118  Identities=12%  Similarity=0.048  Sum_probs=94.1

Q ss_pred             HHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           84 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL--EKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~--~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.++..+.+.+...++                ...+++.++.+....|+.  ++++.++.+++++.++      ...++.
T Consensus        89 ~eeL~~~~~~i~~npk----------------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~  146 (320)
T PLN02789         89 EEELDFAEDVAEDNPK----------------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWS  146 (320)
T ss_pred             HHHHHHHHHHHHHCCc----------------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHH
Confidence            4555555556655554                455788899888888874  7788999999986555      888999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL---GDL----ERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---g~~----~~A~~~~~~al~~~~~  229 (230)
                      +.|.+....|+|++|++++.++|+..      +....+|+..|.+....   |.+    ++++.+..+++...+.
T Consensus       147 ~R~w~l~~l~~~~eeL~~~~~~I~~d------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~  215 (320)
T PLN02789        147 HRQWVLRTLGGWEDELEYCHQLLEED------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR  215 (320)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHC------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999986      77889999999998776   333    5788888899886653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=4.6e-07  Score=71.98  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+.++|.+.+..+++|-++..|++++..+..   +...+..++|+|.+....||+.-|..+|+-++..+      +....
T Consensus       360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d------~~h~e  430 (478)
T KOG1129|consen  360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD------AQHGE  430 (478)
T ss_pred             HHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhccC------cchHH
Confidence            3557889999999999999999999986643   23367889999999999999999999999998764      78899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +++|+|..-...|+.++|..+++-|-...+
T Consensus       431 alnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  431 ALNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             HHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            999999999999999999999998876543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.42  E-value=2.8e-05  Score=62.85  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ....+++.++..+..+|..-.|.++.+++.+++-..+|....+++...+|++|+..|+.+.|..-|++|.......+|..
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm  283 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM  283 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
Confidence            45668889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLER-----AARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~-----A~~~~~~al~~~~  228 (230)
                      ....++-..+.+.....-..+     |++.-++.+++.+
T Consensus       284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~  322 (518)
T KOG1941|consen  284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS  322 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence            999999999999887766666     8888888888764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.42  E-value=6.3e-06  Score=68.68  Aligned_cols=98  Identities=22%  Similarity=0.243  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      +...+...+.++...++.++|.+.+++++.+.+.      ......++|+.+...|++++|+..++..+.-.      |.
T Consensus       339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~------p~  406 (484)
T COG4783         339 NPYYLELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLKGGKPQEAIRILNRYLFND------PE  406 (484)
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CC
Confidence            4555667899999999999999999999996655      56778899999999999999999999876553      77


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ++..|..++.+|..+|+-.+|...+-.++.
T Consensus       407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         407 DPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            888999999999999888877776655544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.41  E-value=4.7e-06  Score=72.15  Aligned_cols=66  Identities=20%  Similarity=0.133  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.++..+|..+...|++++|...+++|+.+.      + ...+|..+|.++...|++++|++.|++|+.+-+
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            35778888999999999999999999999985      5 368999999999999999999999999998654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.40  E-value=2.1e-06  Score=54.04  Aligned_cols=58  Identities=26%  Similarity=0.388  Sum_probs=53.1

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       124 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ..+|...+++++|+.++++++.+.+.      ....+...|.++...|++++|++.|+++++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            56789999999999999999997655      78889999999999999999999999999885

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.40  E-value=1.8e-05  Score=60.40  Aligned_cols=143  Identities=17%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      +.+-..+......++...++..|.+.....|.           .+.  ...+.+.+|..++..|++++|+..+++.++..
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-----------s~~--a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPN-----------SPY--APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----------STT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------ChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            34556667777777888888888888888775           222  23468899999999999999999999999977


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhCCcccHH--------------HHHHH
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQISEREGEYSGST--------------EAYGA  202 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~Ai~~~~~al~~~~~~~~~~~~~--------------~~~~~  202 (230)
                      +...   ....+++.+|.++...           +...+|+..|+..++...   +++...              .--..
T Consensus        73 P~~~---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP---~S~y~~~A~~~l~~l~~~la~~e~~  146 (203)
T PF13525_consen   73 PNSP---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP---NSEYAEEAKKRLAELRNRLAEHELY  146 (203)
T ss_dssp             TT-T---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T---TSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc---CchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7643   3567788888876554           334578888888776543   333222              22344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          203 IADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       203 lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +|..|...|+|..|+..++.+++.++.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~  173 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPD  173 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            799999999999999999999987653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.40  E-value=2.3e-05  Score=54.34  Aligned_cols=101  Identities=18%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+.-++..+.+.++...+++.|.+++...|.                .+.++++.+..+.-+|+.++|++.++++++++.
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag  108 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPE----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAG  108 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhccc----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence            3444555566666788899999999999987                677899999999999999999999999999876


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .  .......++...|.+|+.+|+-+.|...|+.+-++.
T Consensus       109 ~--~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  109 D--QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             c--cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            5  455578889999999999999999999999987764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.39  E-value=3.9e-06  Score=67.26  Aligned_cols=104  Identities=22%  Similarity=0.251  Sum_probs=93.7

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      +..++.-.+.+|..+...|++..|+..|..|++      ..+....+++..|.+|...|+-.-|+..+.+++++.     
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-----  102 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVE------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK-----  102 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----
Confidence            344666788999999999999999999999999      444488999999999999999999999999999985     


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                       |+..-+....|.++.++|++++|...|++.++.-+
T Consensus       103 -pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~  137 (504)
T KOG0624|consen  103 -PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP  137 (504)
T ss_pred             -ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC
Confidence             88888999999999999999999999999987543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.39  E-value=2.9e-05  Score=65.44  Aligned_cols=94  Identities=14%  Similarity=0.097  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +...+.....+|+++.|..++.++.+..++      ... .....+.++...|++++|+..+++..+..      |..+.
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~------P~~~~  188 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADN------DQLPVEITRVRIQLARNENHAARHGVDKLLEVA------PRHPE  188 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHH
Confidence            334456668999999999999999874333      211 22234889999999999999999998875      77889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ++..++.+|...|++++|.+.+.+..+
T Consensus       189 al~ll~~~~~~~gdw~~a~~~l~~l~k  215 (398)
T PRK10747        189 VLRLAEQAYIRTGAWSSLLDILPSMAK  215 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999988877664

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.37  E-value=1.1e-05  Score=67.95  Aligned_cols=87  Identities=17%  Similarity=0.161  Sum_probs=71.6

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948          129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  208 (230)
Q Consensus       129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  208 (230)
                      ..+++++++...++.++.      .+..+..+..+|.++...+++++|.++|+++++..      |. ...+..++.++.
T Consensus       306 ~~~~~~~al~~~e~~lk~------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~------P~-~~~~~~La~~~~  372 (398)
T PRK10747        306 KTNNPEQLEKVLRQQIKQ------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR------PD-AYDYAWLADALD  372 (398)
T ss_pred             cCCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CC-HHHHHHHHHHHH
Confidence            347777777777777763      33366788899999999999999999999999874      44 455778999999


Q ss_pred             HcCCHHHHHHHHHHHHHhhh
Q 026948          209 ELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       209 ~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++|+.++|..+|++++....
T Consensus       373 ~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        373 RLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HcCCHHHHHHHHHHHHhhhc
Confidence            99999999999999988653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.37  E-value=4.4e-06  Score=74.59  Aligned_cols=102  Identities=20%  Similarity=0.306  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ++..++.-|+.-|+|+.+.....-++.-.   ......+.+++++|.+|-.+|+|++|..||.++++...     ....-
T Consensus       272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~~~l  343 (1018)
T KOG2002|consen  272 ALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DNFVL  343 (1018)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CCccc
Confidence            45556666666666666666665555422   22333555566666666666666666666666655531     11244


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++.+|..|...|+++.|..+|++.+...+
T Consensus       344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p  373 (1018)
T KOG2002|consen  344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLP  373 (1018)
T ss_pred             cccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence            556666666666666666666666665443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.36  E-value=3.9e-05  Score=55.25  Aligned_cols=101  Identities=17%  Similarity=0.062  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+...+.........++...+...+++..+   ..++.+....+...+|.++...|++++|+..|++++...   +++..
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l   83 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPEL   83 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHH
Confidence            333445555555578899988777777655   455666678889999999999999999999999987743   34445


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDK  222 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~  222 (230)
                      ...+...+|.++...|++++|+..++.
T Consensus        84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   84 KPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            567899999999999999999999866

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.35  E-value=7.2e-06  Score=72.68  Aligned_cols=102  Identities=22%  Similarity=0.318  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..++..|+..+..|++++|...+.++++..+.      ...+|+.||.+|.++|+.+++...+-.|-.+.      |.
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~------p~  205 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN------PK  205 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC------CC
Confidence            4667888999999999999999999999997666      88899999999999999999999998887664      66


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ....|..++....++|++++|+-+|.+|++.-++
T Consensus       206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~  239 (895)
T KOG2076|consen  206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPS  239 (895)
T ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence            6699999999999999999999999999987653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.34  E-value=9.4e-06  Score=55.85  Aligned_cols=98  Identities=17%  Similarity=0.116  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +.......+.+.++..+.+.+...+.           .  .....+.+.+|.++...|++++|+.++++++...+.   .
T Consensus         9 ~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~   72 (119)
T TIGR02795         9 ALLVLKAGDYADAIQAFQAFLKKYPK-----------S--TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---S   72 (119)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-----------c--cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---C
Confidence            44444445666677777777665543           1  112346788999999999999999999999986543   2


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +....++..+|.++...|++++|+.+++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            2235678999999999999999999999998875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=2.9e-05  Score=59.84  Aligned_cols=121  Identities=18%  Similarity=0.214  Sum_probs=91.0

Q ss_pred             HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026948           80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  159 (230)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~  159 (230)
                      ......+++.|...++..|.                +...+-..--+.-.+|+.-+|+....+-++.+..      ...+
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt----------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D~EA  156 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPT----------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------DQEA  156 (289)
T ss_pred             hhchhhHHHHHHHHhccCcc----------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------cHHH
Confidence            33556666666666654443                2222333334445678888999988888886655      6788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhh
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYISRLE  228 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~  228 (230)
                      +..++.+|...|+|++|.-++++.+-+.      |-.+..+..+|++++-+|   +++-|.+||.+++++.+
T Consensus       157 W~eLaeiY~~~~~f~kA~fClEE~ll~~------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  157 WHELAEIYLSEGDFEKAAFCLEELLLIQ------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            9999999999999999999999998775      777788888899887665   67889999999999875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.33  E-value=1.8e-06  Score=71.88  Aligned_cols=71  Identities=21%  Similarity=0.292  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .+..+.+++|+|.++...|+|++|+..|++++++.....+   ...+|+|+|.+|..+|++++|+.++++|++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae---A~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE---AQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3447788999999999999999999999999999888321   1267999999999999999999999999986

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.32  E-value=3.1e-06  Score=54.79  Aligned_cols=64  Identities=30%  Similarity=0.460  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +++++|.++...|++++|+..++++++..      +....++..+|.++...|++++|..+++++++..+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            46789999999999999999999998875      44558899999999999999999999999988654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.31  E-value=1.4e-05  Score=63.34  Aligned_cols=91  Identities=13%  Similarity=0.084  Sum_probs=74.7

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .++..++..|...+..+|.           ..  ....+++++|.+|+..|++++|+.+|.++++.++   +.+....++
T Consensus       157 ~~y~~Ai~af~~fl~~yP~-----------s~--~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl  220 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPD-----------ST--YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAM  220 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcC-----------Cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHH
Confidence            4567777778888887775           11  1234789999999999999999999999888554   445578889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.+|.++...|++++|+..|+++++..
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            999999999999999999999998775

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.31  E-value=4.5e-05  Score=70.85  Aligned_cols=116  Identities=17%  Similarity=0.131  Sum_probs=93.6

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  188 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~--~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~  188 (230)
                      ++......+...+|.++...|++++|..++.+++.+....+..  ......+..+|.++...|++++|...+++++.+..
T Consensus       525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            3344455577789999999999999999999999988875432  22344567789999999999999999999999876


Q ss_pred             HhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          189 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       189 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ... ......++..+|.++...|+++.|...++++..+.
T Consensus       605 ~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        605 NYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             ccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            443 23356678889999999999999999999998764

>TIGR00540 hemY_coli hemY protein

Probab=98.31  E-value=1.4e-05  Score=67.56  Aligned_cols=90  Identities=19%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHhCCcccHHHHH
Q 026948          125 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK--KAARGLGASLQRQGKYREAIKYHSM--VLQISEREGEYSGSTEAY  200 (230)
Q Consensus       125 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~--~~~~~lg~~~~~~~~~~~Ai~~~~~--al~~~~~~~~~~~~~~~~  200 (230)
                      ......++.+.+....+++++..+.      .+  ..+..+|.++.+.|++++|.++|++  +++..      |+.. .+
T Consensus       307 ~~~l~~~~~~~~~~~~e~~lk~~p~------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~------p~~~-~~  373 (409)
T TIGR00540       307 IPRLKPEDNEKLEKLIEKQAKNVDD------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ------LDAN-DL  373 (409)
T ss_pred             hhhcCCCChHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC------CCHH-HH
Confidence            3334457777777778777773333      44  7788999999999999999999995  54442      4433 46


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          201 GAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       201 ~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..+|.++.++|+.++|.++|++++...
T Consensus       374 ~~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       374 AMAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            689999999999999999999997653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.27  E-value=7.2e-06  Score=71.62  Aligned_cols=99  Identities=24%  Similarity=0.245  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHhCCccc
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK--YHSMVLQISEREGEYSG  195 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~--~~~~al~~~~~~~~~~~  195 (230)
                      ..++..|..+...|++.+|...|..|+.+.+.      ...+...+|.++.+.|+..-|.+  .+..+++++      |.
T Consensus       685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d------p~  752 (799)
T KOG4162|consen  685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD------PL  752 (799)
T ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC------CC
Confidence            35567788888888899999999988886655      67788889999999998888888  888888885      88


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..++|+.+|.++..+|+.++|.++|+-|+++-+
T Consensus       753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999988644

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00013  Score=56.00  Aligned_cols=113  Identities=16%  Similarity=0.091  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..+..-+..|....+|++|..++.++.+.+++.......+.++-..|........+.++..++++|..+..+.+.+..
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            34445566778888899999999999999988887777778888999999999999999999999999999988776554


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      -+.++-.-|.+ .+..+.++|+..|++++++++.
T Consensus       110 AAmaleKAak~-lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen  110 AAMALEKAAKA-LENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhc
Confidence            45555544544 4566899999999999998865

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.22  E-value=0.0003  Score=47.96  Aligned_cols=110  Identities=20%  Similarity=0.217  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~------~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      ..+.-|.-....|-|++|...+.++.++...++...      ..+-++-.|+..+..+|+|++++..-.+++......++
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE   90 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE   90 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence            344555666778999999999999999998765322      24566778899999999999999999999987766543


Q ss_pred             cc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          193 YS-----GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       193 ~~-----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..     ....+-++.|.++..+|+.++|+..|+++-++..
T Consensus        91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia  131 (144)
T PF12968_consen   91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA  131 (144)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            22     2344667889999999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=4.1e-06  Score=63.80  Aligned_cols=96  Identities=9%  Similarity=0.067  Sum_probs=86.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      +...|..++.-.+|+.|+++|.+++.+.+.      .+..+.|-+.+|++.++++.+...+++++++.      ++....
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~------~N~vk~   80 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD------PNLVKA   80 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC------hHHHHH
Confidence            445688888899999999999999996555      67778899999999999999999999999996      888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++.+|.+......|++|+..+++|.+..
T Consensus        81 h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   81 HYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            9999999999999999999999997765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=2e-05  Score=65.79  Aligned_cols=101  Identities=15%  Similarity=0.133  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ....+.+..+..++..|.+++|...+...+.      +.+.+.......|.++...++.++|++.+++++...      |
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------P  371 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIA------AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD------P  371 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------C
Confidence            3445788888999999999999999998777      344477778889999999999999999999999986      7


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .......++|.+|.+.|++++|+...+..+.-.
T Consensus       372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~  404 (484)
T COG4783         372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFND  404 (484)
T ss_pred             CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence            778899999999999999999999998887644

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.00011  Score=56.67  Aligned_cols=97  Identities=24%  Similarity=0.222  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +.-..|..+...|++++|+++|+..++      +.+....++-..-.+...+|+.-+||+.+..-++..      +.+.+
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------~~D~E  155 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLE------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------MNDQE  155 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhc------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------cCcHH
Confidence            344567888889999999999999888      444455555555556778888889999999988886      88899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +|..++++|...|+|++|..+|++.+=+.
T Consensus       156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  156 AWHELAEIYLSEGDFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999987543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=98.13  E-value=7.1e-05  Score=49.69  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=67.9

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948          127 FLRNQDLEKAFTEFKAALELAQNVKDPI---EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  203 (230)
Q Consensus       127 ~~~~g~~~~A~~~~~~al~l~~~~~~~~---~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  203 (230)
                      ....|+|..|++.+.+..+.........   ....+..++|.++...|++++|+..+++++++.++.+|......++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            3467999999999999999887765544   5677889999999999999999999999999999999987777776666


Q ss_pred             HHHH
Q 026948          204 ADCY  207 (230)
Q Consensus       204 g~~y  207 (230)
                      ..+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            5543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.12  E-value=2.5e-05  Score=54.17  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+.++++.++-..|+.++|+.+|++++...   .+.+....++..+|.++..+|++++|...+++++.-++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            467899999999999999999999998752   233456789999999999999999999999999886553

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=7e-06  Score=67.14  Aligned_cols=113  Identities=19%  Similarity=0.255  Sum_probs=93.4

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      +...+.+++..|.+++..++.+.|+.+|++++.+.+.+.+.      +........-|+-.++.|+|..|.++|..+|.+
T Consensus       199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i  278 (486)
T KOG0550|consen  199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI  278 (486)
T ss_pred             ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence            33456678889999999999999999999999988764332      223444667789999999999999999999999


Q ss_pred             HHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       187 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+...  ...+.+|.|.|.+...+|+.++|+...+.|+++-
T Consensus       279 dP~n~--~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD  317 (486)
T KOG0550|consen  279 DPSNK--KTNAKLYGNRALVNIRLGRLREAISDCNEALKID  317 (486)
T ss_pred             Ccccc--chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence            75522  3468899999999999999999999999998864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.12  E-value=4.2e-05  Score=69.66  Aligned_cols=127  Identities=6%  Similarity=-0.047  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC
Q 026948           73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD  152 (230)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~  152 (230)
                      ++......++...++..+++.+...|.                ...+...+..++...|+.++|+.++++++.      .
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~----------------~~~av~dll~l~~~~G~~~~A~~~~eka~~------p   97 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPL----------------QSGQVDDWLQIAGWAGRDQEVIDVYERYQS------S   97 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCcc----------------chhhHHHHHHHHHHcCCcHHHHHHHHHhcc------C
Confidence            344444555666788889999988876                111222667777788999999999999993      2


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .......+..+|.++...|+|++|++.|+++++..      |..+.++..++.+|...++.++|++.++++....
T Consensus        98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d  166 (822)
T PRK14574         98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAERD  166 (822)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence            22244556667889999999999999999999885      7678888899999999999999999999887654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.06  E-value=8.9e-06  Score=43.02  Aligned_cols=29  Identities=31%  Similarity=0.589  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +|+++|.+|..+|++++|+.+|++++++-
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            44555555555555555555555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=98.06  E-value=0.00012  Score=56.14  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=76.6

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-------CcccHHHHH
Q 026948          129 RNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-------EYSGSTEAY  200 (230)
Q Consensus       129 ~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~-------~~~~~~~~~  200 (230)
                      ...++++|+..|.-|+-.+...+ +....+..+..++.+|...|+.+....++++|++..++.-       ...+.....
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            34678889998888887777544 4445788889999999999997777777777776665521       122456788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          201 GAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       201 ~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +.+|.++...|++++|..+|.+++...
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            889999999999999999999988643

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.04  E-value=1.5e-05  Score=41.98  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+++.+|.++..+|++++|+.+|++++++.++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555666666666666555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.0001  Score=56.62  Aligned_cols=106  Identities=15%  Similarity=0.187  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC------ChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK------DPI------EEKKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------~~~------~~~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      ..+.++...|+-++.+|+|.+|...|..|+...++..      +..      .....+.|...|+...|+|-++++.+..
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            3445677999999999999999999999998776531      111      1344588999999999999999999999


Q ss_pred             HHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       183 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .+...      +.+..+|+..|.+....=+.++|...+.++++.
T Consensus       256 iL~~~------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  256 ILRHH------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHhcC------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            98886      889999999999999999999999999999875

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.02  E-value=1.3e-05  Score=60.41  Aligned_cols=101  Identities=16%  Similarity=0.074  Sum_probs=88.6

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      ++..+..++.+|..|-..|-..-|...|.+++.+.++      .+.+++.+|..+...|+|+-|.+.|...++++     
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-----  129 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----  129 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-----
Confidence            3446667889999999999999999999999997666      88899999999999999999999999999986     


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                       |....++.|.|..+.--|+|+-|.+.+.+-.+
T Consensus       130 -p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785         130 -PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             -CcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence             77788999999999999999999988766443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.02  E-value=1.9e-05  Score=68.74  Aligned_cols=97  Identities=20%  Similarity=0.244  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +...+|...+..++|.++..+++.++++.+-      ....++++|.+..+.++++.|.++|..++.+.      |+...
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~------Pd~~e  554 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE------PDNAE  554 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC------CCchh
Confidence            4555666667789999999999999995544      77889999999999999999999999999886      88999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +|+|++.+|...|+..+|...+++|++..
T Consensus       555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  555 AWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             hhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            99999999999999999999999998743

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.99  E-value=0.00036  Score=60.48  Aligned_cols=112  Identities=15%  Similarity=0.147  Sum_probs=88.2

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      .++...+.+++.+|..|...|++++|+++.++++.      ..+.....|...|.++-+.|++++|.++++.|-.++.+.
T Consensus       188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            34444566788999999999999999999999999      445588999999999999999999999999887654430


Q ss_pred             -----------------------------CC-cc-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          191 -----------------------------GE-YS-------GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       191 -----------------------------~~-~~-------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                                                   .+ .+       .........|.+|...|++..|+..|..+.++++
T Consensus       262 RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  262 RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                                         11 11       0111223469999999999999999999988775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.98  E-value=2e-05  Score=42.36  Aligned_cols=26  Identities=23%  Similarity=0.617  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          200 YGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      |.+||.+|..+|+|++|+.+|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555555555555555555555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.98  E-value=9.5e-05  Score=63.77  Aligned_cols=93  Identities=14%  Similarity=0.216  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      |..+|.++....+|++|+.+|..|+.+.++      +...+..++....++++|+...+.-.+-++..      |..-..
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~------~~~ra~  145 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR------PSQRAS  145 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------hhhHHH
Confidence            334444444445555555555555543222      44444445544455555554444444444332      444455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          200 YGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      |...+.++...|+|..|....+...
T Consensus       146 w~~~Avs~~L~g~y~~A~~il~ef~  170 (700)
T KOG1156|consen  146 WIGFAVAQHLLGEYKMALEILEEFE  170 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666665554443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.97  E-value=0.0001  Score=67.04  Aligned_cols=106  Identities=13%  Similarity=0.200  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      -.++..+|.+|..+|++++|...|++++++.      +..+.+++++|..+... +.++|+.++.+|+...-........
T Consensus       116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~  188 (906)
T PRK14720        116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGI  188 (906)
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHH
Confidence            3488899999999999999999999999965      44899999999999999 9999999999998765432211111


Q ss_pred             H----------------------HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          197 T----------------------EAYGAIA------------DCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       197 ~----------------------~~~~~lg------------~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .                      .....+|            .+|.+.++|++++..++.++++-++
T Consensus       189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~  255 (906)
T PRK14720        189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK  255 (906)
T ss_pred             HHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence            1                      1122234            8899999999999999999987654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.96  E-value=3e-05  Score=41.62  Aligned_cols=31  Identities=32%  Similarity=0.566  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~  189 (230)
                      ++.+||.+|...|+|++|+++|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4678888888888888888888888766543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.95  E-value=8.6e-06  Score=43.14  Aligned_cols=34  Identities=26%  Similarity=0.476  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHH
Q 026948          179 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  218 (230)
Q Consensus       179 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  218 (230)
                      +|+++|++.      |..+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~------P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELN------PNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHC------CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            378888886      8899999999999999999999863

>PRK11906 transcriptional regulator; Provisional

Probab=97.93  E-value=0.00015  Score=60.77  Aligned_cols=85  Identities=14%  Similarity=0.016  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948          132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  211 (230)
Q Consensus       132 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  211 (230)
                      +-.+|.+...+|+++.+.      .+.++..+|.+....++++.|+..|++|+.+.      |+.+.+++..|.+....|
T Consensus       319 ~~~~a~~~A~rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------Pn~A~~~~~~~~~~~~~G  386 (458)
T PRK11906        319 AAQKALELLDYVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS------TDIASLYYYRALVHFHNE  386 (458)
T ss_pred             HHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------CccHHHHHHHHHHHHHcC
Confidence            345666777777775544      78899999999999999999999999999996      899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 026948          212 DLERAARFYDKYISRLE  228 (230)
Q Consensus       212 ~~~~A~~~~~~al~~~~  228 (230)
                      +.++|.+..++++++.+
T Consensus       387 ~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        387 KIEEARICIDKSLQLEP  403 (458)
T ss_pred             CHHHHHHHHHHHhccCc
Confidence            99999999999988653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.91  E-value=3e-05  Score=43.69  Aligned_cols=42  Identities=26%  Similarity=0.312  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  205 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~  205 (230)
                      .++..+|.+|...|++++|++.|+++++..      |++..++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~------P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALD------PDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCCHHHHHHhhh
Confidence            467889999999999999999999999986      888889888875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00031  Score=57.92  Aligned_cols=133  Identities=17%  Similarity=0.129  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh----
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN----  149 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----  149 (230)
                      +..+-...+.++++..|+.+....|-                ....+-.+-.+|...|++.+|....+.++...+.    
T Consensus       341 G~lL~~~~R~~~A~IaFR~Aq~Lap~----------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~  404 (564)
T KOG1174|consen  341 GRLLIALERHTQAVIAFRTAQMLAPY----------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS  404 (564)
T ss_pred             cHHHHhccchHHHHHHHHHHHhcchh----------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh
Confidence            33444444667777777777777654                3333444445555555555554433222221111    


Q ss_pred             --------------------------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948          150 --------------------------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  203 (230)
Q Consensus       150 --------------------------~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  203 (230)
                                                ..-.+....+-..++..+..-|.+..++..+++.+...      + +...+..+
T Consensus       405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~------~-D~~LH~~L  477 (564)
T KOG1174|consen  405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF------P-DVNLHNHL  477 (564)
T ss_pred             hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc------c-ccHHHHHH
Confidence                                      11233345566778888999999999999999998874      3 45688999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          204 ADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       204 g~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      |+++...+.+++|..+|..|+.+-++
T Consensus       478 gd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  478 GDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999987654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.87  E-value=4.7e-05  Score=40.15  Aligned_cols=31  Identities=29%  Similarity=0.504  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.+++++|.++..+|++++|+.+|++++++.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            3578899999999999999999999999885

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.85  E-value=5.4e-05  Score=66.06  Aligned_cols=101  Identities=16%  Similarity=0.207  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....++..|.+..+.++++.|..+|...+.+.+.      ...+.+|+...|...++-.+|...+++|++..      ..
T Consensus       518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn------~~  585 (777)
T KOG1128|consen  518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN------YQ  585 (777)
T ss_pred             chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC------CC
Confidence            5568999999999999999999999999996555      88999999999999999999999999999885      45


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ....|.|--.+-...|++++|+..|.+.+.+-.
T Consensus       586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            567888888899999999999999999887643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.84  E-value=0.00074  Score=48.52  Aligned_cols=103  Identities=25%  Similarity=0.342  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----CC-h----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-P----------IEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~~-~----------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      ....|......++.+.++..+.+++.+++.-     .+ .          .....+...++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3444666667788888888888888877531     11 1          112335667778888999999999999999


Q ss_pred             HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +...      |....+|..+-.+|...|++..|+..|++..+.+.
T Consensus        89 l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   89 LALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             HHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            9996      88899999999999999999999999999877654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=8.3e-05  Score=56.87  Aligned_cols=104  Identities=21%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      .++.++++..+..-++..++..|.+++...|.                .+.-+.+.+.+|++..+++.+.....+++++.
T Consensus        11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~----------------~~~Y~tnralchlk~~~~~~v~~dcrralql~   74 (284)
T KOG4642|consen   11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPT----------------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD   74 (284)
T ss_pred             HHHHhccccccchhhhchHHHHHHHHHhcCCC----------------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence            46777777777777889999999999998886                23345588999999999999999999999977


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ++      ...+.+.+|.+......|++||..++++..+.+.....
T Consensus        75 ~N------~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~  114 (284)
T KOG4642|consen   75 PN------LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT  114 (284)
T ss_pred             hH------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence            66      88999999999999999999999999998888775543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.82  E-value=0.0017  Score=48.33  Aligned_cols=106  Identities=14%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      -.++..+|..|.+.|+.++|+..|.++.+.   +.........+.++-.+....+++.....+..++-.+.+..++....
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            346889999999999999999999997763   33444466778888888999999999999999998888765554444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ......-|..+...++|..|...|-.+..
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            45566678888899999999998876653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.81  E-value=0.0002  Score=55.92  Aligned_cols=90  Identities=18%  Similarity=0.147  Sum_probs=72.0

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      ++..+...|+.-+..+|++             .....+++++|.+++.+|+|++|...|..+.+   ..++.+..+.++.
T Consensus       156 dy~~A~~~F~~fi~~YP~s-------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdall  219 (262)
T COG1729         156 DYAEAEQAFQAFIKKYPNS-------------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALL  219 (262)
T ss_pred             CHHHHHHHHHHHHHcCCCC-------------cccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHH
Confidence            4555556666666666652             12344799999999999999999999998877   4555555778999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .+|.+..++|+.++|...|+++++-.
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            99999999999999999999998775

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.79  E-value=0.00076  Score=58.07  Aligned_cols=103  Identities=19%  Similarity=0.098  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      -++..|.++...|+.++|++.+++++.....  .+.....+++.+|.++..+.+|++|.++|.+..+..     .-..+.
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-----~WSka~  341 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-----KWSKAF  341 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----ccHHHH
Confidence            4567899999999999999999998853333  444566789999999999999999999999987653     123455


Q ss_pred             HHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDL-------ERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~~  228 (230)
                      ..+..|.|+...|+.       ++|.+++.++-....
T Consensus       342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            567779999999999       888888887765543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.78  E-value=0.00025  Score=51.44  Aligned_cols=75  Identities=12%  Similarity=0.097  Sum_probs=63.4

Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .-.+-+...-...+..|.-++..|++++|...|+-.....      +...+.+..||-|+..+++|++|+..|-.|..+-
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3344556677788999999999999999999998866553      7778899999999999999999999999887654


Q ss_pred             h
Q 026948          228 E  228 (230)
Q Consensus       228 ~  228 (230)
                      .
T Consensus       102 ~  102 (165)
T PRK15331        102 K  102 (165)
T ss_pred             c
Confidence            3

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.77  E-value=0.00035  Score=56.36  Aligned_cols=98  Identities=17%  Similarity=0.205  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      ..+.++++.+..++.++++|+.|.+.+...|.                +.-.+.+++..|+++.+|..|....+.|+.+.
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~----------------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd  161 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH----------------NPVYHINRALAYLKQKSFAQAEEDCEAAIALD  161 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhccCCC----------------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence            34778889999999999999999999998885                23356688999999999999999999999987


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.      ...+|...|.+-..+|+..+|.+.++.++++.
T Consensus       162 ~~------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  162 KL------YVKAYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HH------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            66      78889999999999999999999999999885

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.75  E-value=0.0001  Score=38.72  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+|+.+|.+|..+|++++|..+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3566666666666666666666666666544

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.73  E-value=0.00042  Score=50.94  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 026948          133 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISEREGEYSGSTEAYGA  202 (230)
Q Consensus       133 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  202 (230)
                      |+.|.+.++......+.      .+..+++=|.++.++          ..+++|+.=|++|+.+.      |...+++++
T Consensus         7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~------P~~hdAlw~   74 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN------PNKHDALWC   74 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC------CchHHHHHH
Confidence            55666666666664333      455555555555443          44677788888888886      888999999


Q ss_pred             HHHHHHHcCC----HHHHHHHHHHHHHhh
Q 026948          203 IADCYTELGD----LERAARFYDKYISRL  227 (230)
Q Consensus       203 lg~~y~~~g~----~~~A~~~~~~al~~~  227 (230)
                      +|.+|..++.    ..+|..+|++|.+.+
T Consensus        75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~F  103 (186)
T PF06552_consen   75 LGNAYTSLAFLTPDTAEAEEYFEKATEYF  103 (186)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence            9999987654    345555555555444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.71  E-value=0.00092  Score=47.47  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+-..+........+..++..+.......|.           ++-.  ..+.+.+|..|+..+++++|+..+++.+++.+
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-----------g~ya--~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPF-----------GEYA--EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----------Cccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3445555666666777777777776666665           2221  23688999999999999999999999999887


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHH
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGK---------------YREAIKYHSMVLQIS  187 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~---------------~~~Ai~~~~~al~~~  187 (230)
                      .+.+   ...+++-.|.+++.+.+               ..+|...|++.++..
T Consensus        79 ~hp~---vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   79 THPN---VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCCC---ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            7543   55678888888888776               888888888887765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0011  Score=56.88  Aligned_cols=110  Identities=18%  Similarity=0.158  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHH------------------------HHhcC-ChHHHHHHHHHHHHHHHHcCCH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALEL------------------------AQNVK-DPIEEKKAARGLGASLQRQGKY  173 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l------------------------~~~~~-~~~~~~~~~~~lg~~~~~~~~~  173 (230)
                      ...-.|.+++++|+|++|++.|+...+-                        ....+ ........++|.+-++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            5666799999999999999988776420                        00111 1122455689999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCc---------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          174 REAIKYHSMVLQISEREGEY---------SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       174 ~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+|++.+++|+++.++.-..         .....+...++.++..+|+.++|...|...+....
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~  255 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP  255 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence            99999999998887763211         12344677899999999999999999999887543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=0.00016  Score=37.97  Aligned_cols=31  Identities=32%  Similarity=0.494  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.+++.+|.++...|++++|+++|++++++.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            3578899999999999999999999999885

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.64  E-value=0.00058  Score=45.30  Aligned_cols=63  Identities=21%  Similarity=0.252  Sum_probs=55.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCcc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          167 LQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       167 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ..+.|||.+|++.+.+..+.........   ....+..++|.++...|++++|...+++++++.++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999987776655   56678899999999999999999999999998753

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.60  E-value=0.02  Score=44.61  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+-+++......+....++..|.......|.           ++..  -.+.+.++..+++.+++++|+...++.+.+.+
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-----------s~~~--~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP  102 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPF-----------SPYS--EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP  102 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------Cccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence            3444455555556667777777777766664           2222  23688899999999999999999999999877


Q ss_pred             hcCChHHHHHHHHHHHHHHHHc-----CCH---HHHHHHHHHHHHHHHHhCCcccHHHH--------------HHHHHHH
Q 026948          149 NVKDPIEEKKAARGLGASLQRQ-----GKY---REAIKYHSMVLQISEREGEYSGSTEA--------------YGAIADC  206 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~-----~~~---~~Ai~~~~~al~~~~~~~~~~~~~~~--------------~~~lg~~  206 (230)
                      ...+   ...+++-.|.+++..     .|.   .+|+..|+..+.   +.++++...++              -..+|..
T Consensus       103 ~~~n---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary  176 (254)
T COG4105         103 THPN---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RYPNSRYAPDAKARIVKLNDALAGHEMAIARY  176 (254)
T ss_pred             CCCC---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6444   445666667666532     333   345555555544   34444432222              2347889


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhh
Q 026948          207 YTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       207 y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      |.+.|.+-.|+..++..++-++
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~y~  198 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLENYP  198 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhccc
Confidence            9999999999999999987654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.56  E-value=0.0046  Score=48.11  Aligned_cols=106  Identities=17%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      +..++..|....+.|++++|+..|++...   ++...+....+...++.++++.++|++|+.+.++-+...   +.+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~---~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly---P~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDS---RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY---PTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---CCCCCh
Confidence            34788999999999999999999998664   555555568889999999999999999999999987775   455667


Q ss_pred             HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhhh
Q 026948          197 TEAYGAIADCYTELGD--------LERAARFYDKYISRLE  228 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~--------~~~A~~~~~~al~~~~  228 (230)
                      ..+++..|.++...=+        -.+|+..++..++.++
T Consensus       108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP  147 (254)
T COG4105         108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP  147 (254)
T ss_pred             hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence            7888888988754321        2466666666666554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.56  E-value=0.00075  Score=58.44  Aligned_cols=130  Identities=15%  Similarity=0.098  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +..+..+.++..++...+...++.+...+.                ...++-..|..+...|+-++|.++...++.    
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e----------------HgeslAmkGL~L~~lg~~~ea~~~vr~glr----   69 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILKKFPE----------------HGESLAMKGLTLNCLGKKEEAYELVRLGLR----   69 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhCCc----------------cchhHHhccchhhcccchHHHHHHHHHHhc----
Confidence            444455555555666666556666665554                333567789999999999999999999998    


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                        +......+++-+|.+++..++|++|+++|+.|+.+.      +++...+..++....++++|+-....-.+-++..
T Consensus        70 --~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~  139 (700)
T KOG1156|consen   70 --NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR  139 (700)
T ss_pred             --cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence              333366788899999999999999999999999996      7788999999999999999998887777766643

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.54  E-value=5.6e-05  Score=63.15  Aligned_cols=96  Identities=14%  Similarity=0.145  Sum_probs=84.1

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  201 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  201 (230)
                      ..+...+..++|+.|+..|.+|+++.++      .+..+.+.+..+.+.++|..|+..+.++++..      |....+|+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d------P~~~K~Y~   76 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIELD------PTYIKAYV   76 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhcC------chhhheee
Confidence            4567778889999999999999997665      55566777788999999999999999999985      88899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          202 AIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       202 ~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ..|.+...++++.+|...|++.....++
T Consensus        77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   77 RRGTAVMALGEFKKALLDLEKVKKLAPN  104 (476)
T ss_pred             eccHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence            9999999999999999999998776654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.0027  Score=51.61  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS  181 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~  181 (230)
                      ++.....++|.+++..|+|++|+..|+-+..  +.  +  -.+....+++-+++-.|.|.+|.....
T Consensus        55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~--~--~~~el~vnLAcc~FyLg~Y~eA~~~~~  115 (557)
T KOG3785|consen   55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--KD--D--APAELGVNLACCKFYLGQYIEAKSIAE  115 (557)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--cC--C--CCcccchhHHHHHHHHHHHHHHHHHHh
Confidence            3445777899999999999999886654443  10  0  012223344445555555555544433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.52  E-value=0.0015  Score=52.61  Aligned_cols=96  Identities=21%  Similarity=0.296  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          117 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ..+.+..+++....|  ++.+|...|++..+   +.   ...+..+.+++.++..+|+|++|.+.+++++...      +
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------~  232 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KF---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------P  232 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------C
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------c
Confidence            334555556655554  68899988888443   32   2245678899999999999999999999987543      7


Q ss_pred             cHHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 026948          195 GSTEAYGAIADCYTELGDL-ERAARFYDKYI  224 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~-~~A~~~~~~al  224 (230)
                      ..++++.|+..+...+|+. +.+.++..+.-
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            7889999999999999998 55555655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.52  E-value=0.0015  Score=50.24  Aligned_cols=97  Identities=22%  Similarity=0.218  Sum_probs=71.5

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-------CChH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------KDPI  154 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------~~~~  154 (230)
                      ..+.++..|..++-.+..         ...+....+..++.+|++|...|+-+....++++|+..+...       ....
T Consensus        92 t~~~ai~~YkLAll~~~~---------~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~  162 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQI---------KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM  162 (214)
T ss_pred             CHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence            345666667666655442         123455678889999999999999777777777777666532       1233


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ......+-+|..+++.|++++|+.+|.+.+...
T Consensus       163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            456778899999999999999999999987653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.50  E-value=0.00041  Score=62.77  Aligned_cols=97  Identities=21%  Similarity=0.242  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+..+|..|...+++.+|+..++.+++..++      ..++..++|.+|.+.|+|..|++.|.++..+.      |....
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr------P~s~y  631 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLLR------PLSKY  631 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC------cHhHH
Confidence            3446788888899999999999999996555      78889999999999999999999999998885      77777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +-+..+......|+|++|...+.+.+..+
T Consensus       632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~  660 (1238)
T KOG1127|consen  632 GRFKEAVMECDNGKYKEALDALGLIIYAF  660 (1238)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            88889999999999999999999888755

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.47  E-value=0.0025  Score=55.49  Aligned_cols=107  Identities=15%  Similarity=0.086  Sum_probs=76.3

Q ss_pred             ccHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC--------HHHHHHHH
Q 026948          112 PKKEELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK--------YREAIKYH  180 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~--------~~~Ai~~~  180 (230)
                      +....++.++..|.-|...++   +.+|+.+|++++++.+.      .+.++-.++.++.....        ...+.+..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            344467778888888876655   88999999999997766      66677776666654322        23344444


Q ss_pred             HHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          181 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       181 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++++.+    ...+..+.+|..+|......|++++|..++++|+++.+
T Consensus       408 ~~a~al----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p  451 (517)
T PRK10153        408 DNIVAL----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM  451 (517)
T ss_pred             HHhhhc----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence            443332    12344568899999999999999999999999998653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00091  Score=55.24  Aligned_cols=97  Identities=11%  Similarity=0.120  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      ++.-|...+..+++..|+.+-.++++..++      ...++.-.|......|+.++|+-.|+.|+.+.      |..-++
T Consensus       303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p~rL~~  370 (564)
T KOG1174|consen  303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQMLA------PYRLEI  370 (564)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhcc------hhhHHH
Confidence            444556677788999999999999986555      77889999999999999999999999999886      788899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      |..+-.+|...|++.+|...-+.+++.++
T Consensus       371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~  399 (564)
T KOG1174|consen  371 YRGLFHSYLAQKRFKEANALANWTIRLFQ  399 (564)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence            99999999999999999998888887664

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.013  Score=45.40  Aligned_cols=107  Identities=18%  Similarity=0.151  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .-+..+--.....+.++|+..|++++.+...-+........+...++++.+.+.|++|-..+.+-..+..+....+....
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k  191 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK  191 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence            44455556667889999999999999998875555556667788899999999999999999888777776666666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .+...-.+|....||..|..+|+...+
T Consensus       192 ~~va~ilv~L~~~Dyv~aekc~r~~~q  218 (308)
T KOG1585|consen  192 AYVAAILVYLYAHDYVQAEKCYRDCSQ  218 (308)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence            777777778888899999999987544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.45  E-value=0.00049  Score=36.08  Aligned_cols=30  Identities=30%  Similarity=0.571  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .+++.+|.++...|++++|+++|++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            568889999999999999999999998886

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.42  E-value=0.00011  Score=38.88  Aligned_cols=34  Identities=38%  Similarity=0.511  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 026948          139 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK  178 (230)
Q Consensus       139 ~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~  178 (230)
                      +|++++++.++      .+.+++++|.++...|++++|++
T Consensus         1 ~y~kAie~~P~------n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPN------NAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCC------CHHHHHHHHHHHHHCcCHHhhcC
Confidence            36788886665      88999999999999999999863

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.41  E-value=0.0031  Score=46.43  Aligned_cols=49  Identities=22%  Similarity=0.399  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHH
Q 026948          133 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-----------YREAIKYHSMVLQIS  187 (230)
Q Consensus       133 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~-----------~~~Ai~~~~~al~~~  187 (230)
                      +++|+.-|++++.+.++      ...+++++|+++...+.           |++|.++|++|.+..
T Consensus        51 iedAisK~eeAL~I~P~------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~  110 (186)
T PF06552_consen   51 IEDAISKFEEALKINPN------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED  110 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC
Confidence            55677778888887766      78899999999987544           666666777766654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.40  E-value=0.0021  Score=58.38  Aligned_cols=106  Identities=19%  Similarity=0.166  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCcc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYS  194 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~  194 (230)
                      +...+..+|..|-..|++.-|+..|.++..+.+.      ...+.+..+...+..|+|.+|++.+...+..... .....
T Consensus       595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~  668 (1238)
T KOG1127|consen  595 DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQN  668 (1238)
T ss_pred             hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6668999999999999999999999999996544      6777888899999999999999999988765432 12234


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +.+.++..++..+...|=+.+|..++++++.++
T Consensus       669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f  701 (1238)
T KOG1127|consen  669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESF  701 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            677888888888888999999999999998865

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.36  E-value=0.0076  Score=49.52  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHH---------HHh----------------cCChHHHHHHHHHHHHHHHHcCCH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALEL---------AQN----------------VKDPIEEKKAARGLGASLQRQGKY  173 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l---------~~~----------------~~~~~~~~~~~~~lg~~~~~~~~~  173 (230)
                      .....+.-+...|+.++|......+++-         .+.                ....+..+..+..||..+++.+.+
T Consensus       265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w  344 (400)
T COG3071         265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW  344 (400)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence            3444566677888888888876666641         111                011222346688999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          174 REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       174 ~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+|-++|+.|++.       ......+.-+|.++.++|+..+|.+.++.++-.+.
T Consensus       345 ~kA~~~leaAl~~-------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         345 GKASEALEAALKL-------RPSASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            9999999999877       33567788899999999999999999999996653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.34  E-value=0.00045  Score=35.83  Aligned_cols=31  Identities=32%  Similarity=0.692  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +++.+|.++...|++++|+..|++.++.+++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666665543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.31  E-value=0.015  Score=44.32  Aligned_cols=92  Identities=17%  Similarity=0.136  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      -+.+++.-++..+-..-+-..+.+++...|.                .+.+.+.+|..+...|+|+.|.+.|+..+++.+
T Consensus        67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~----------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp  130 (297)
T COG4785          67 LLFERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP  130 (297)
T ss_pred             HHHHhcchhhhhhHHHHHhhhhhhhhhcCCC----------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence            4556666666666555555677788887776                566788899999999999999999999998765


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      .      ...+..|.|..++--|+|.-|.+.+.+
T Consensus       131 ~------y~Ya~lNRgi~~YY~gR~~LAq~d~~~  158 (297)
T COG4785         131 T------YNYAHLNRGIALYYGGRYKLAQDDLLA  158 (297)
T ss_pred             c------chHHHhccceeeeecCchHhhHHHHHH
Confidence            5      445566666666666666666666554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.30  E-value=0.0016  Score=56.45  Aligned_cols=68  Identities=22%  Similarity=0.219  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      +....++++.++..|-..|++++|+++.++||+..      |..++.|...|.++.+.|++++|..+.+.|-.+
T Consensus       190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L  257 (517)
T PF12569_consen  190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEAREL  257 (517)
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            34457889999999999999999999999999985      778999999999999999999999999988653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.002  Score=50.36  Aligned_cols=107  Identities=16%  Similarity=0.155  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      +......+|.+-++-||-+.|..++++.-+...+.++-........+.+.+|.-.++|.+|...|.+.+..+      +.
T Consensus       211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D------~~  284 (366)
T KOG2796|consen  211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD------PR  284 (366)
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC------CC
Confidence            444555788888888999988888887777777766777777788888888888899999999888887764      66


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.+-++.|.|..-+|+...|++..+.++.+.+
T Consensus       285 ~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  285 NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            677888888888889999999988888876543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.29  E-value=0.00061  Score=38.23  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLESD  230 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  230 (230)
                      .++..+|.+|..+|++++|+..|+++++..+++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            578899999999999999999999999987653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.24  E-value=0.0034  Score=54.85  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=66.9

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948          126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  205 (230)
Q Consensus       126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~  205 (230)
                      +-+....++.|...+.++...++       ..+.++.-......+++.++|++.++++++..      |.....|..+|.
T Consensus       627 le~en~e~eraR~llakar~~sg-------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f------p~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  627 LEFENDELERARDLLAKARSISG-------TERVWMKSANLERYLDNVEEALRLLEEALKSF------PDFHKLWLMLGQ  693 (913)
T ss_pred             HhhccccHHHHHHHHHHHhccCC-------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC------CchHHHHHHHhH
Confidence            34455667777777766665322       24556666677778888999999999998886      778888899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhh
Q 026948          206 CYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       206 ~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++..+++.+.|.+.|...++..
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKKC  715 (913)
T ss_pred             HHHHHHHHHHHHHHHHhccccC
Confidence            9999999999999888876644

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.23  E-value=0.034  Score=41.39  Aligned_cols=94  Identities=29%  Similarity=0.397  Sum_probs=74.5

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHH
Q 026948          126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA  204 (230)
Q Consensus       126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-~~~~~~~lg  204 (230)
                      ++...|+++.|...+.+++...+.   .......+...+..+...+++++|+..+.+++...      +. ....+..++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~  209 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLN------PDDDAEALLNLG  209 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC------cccchHHHHHhh
Confidence            888999999999999999652210   12345556666666888899999999999998885      44 467899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          205 DCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       205 ~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++...+++++|...+.+++...+
T Consensus       210 ~~~~~~~~~~~a~~~~~~~~~~~~  233 (291)
T COG0457         210 LLYLKLGKYEEALEYYEKALELDP  233 (291)
T ss_pred             HHHHHcccHHHHHHHHHHHHhhCc
Confidence            999999999999999999887654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.22  E-value=0.0011  Score=36.34  Aligned_cols=28  Identities=32%  Similarity=0.529  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      ++.++|.+|..+|++++|+.++++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4445555555555555555555555444

>PRK11906 transcriptional regulator; Provisional

Probab=97.21  E-value=0.005  Score=51.90  Aligned_cols=95  Identities=12%  Similarity=-0.102  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ++.++..+|.+....++++.|...+++|+.+.++      .+.+++..|.+..-.|+.++|++..++++++.      |.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs------P~  404 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEARICIDKSLQLE------PR  404 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------ch
Confidence            6667888999998899999999999999997776      88999999999999999999999999999985      43


Q ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          196 -STEAYGAIADCYTELGDLERAARFYDK  222 (230)
Q Consensus       196 -~~~~~~~lg~~y~~~g~~~~A~~~~~~  222 (230)
                       ...+...+..-.+--...++|+..|-+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        405 RRKAVVIKECVDMYVPNPLKNNIKLYYK  432 (458)
T ss_pred             hhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence             233333444412334456777776644

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.00093  Score=56.28  Aligned_cols=88  Identities=11%  Similarity=0.079  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhc----CC-------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNV----KD-------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~----~~-------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      ....++++|.++++.|.|.-+..+|.+|++ .....    ..       .......+||.|..+...|++-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            455678999999999999999999999996 22211    11       1113567999999999999999999999999


Q ss_pred             HHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948          184 LQISEREGEYSGSTEAYGAIADCYTE  209 (230)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~lg~~y~~  209 (230)
                      ....      ...+..|..+++|...
T Consensus       362 v~vf------h~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  362 VHVF------HRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHH------hcCcHHHHHHHHHHHH
Confidence            9987      5567899999999754

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.15  E-value=0.00013  Score=58.66  Aligned_cols=99  Identities=17%  Similarity=0.148  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ++.-....+...+..|.++.|++.|..++++.+.      .+..+-..+.++...++...|++.|..++.+.      ++
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein------~D  180 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN------PD  180 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccC------cc
Confidence            3333445566677889999999999999995444      77888899999999999999999999999986      66


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .+..|-..|.+...+|++++|..++..+.++
T Consensus       181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  181 SAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            7778888999999999999999999998764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.0097  Score=51.33  Aligned_cols=98  Identities=19%  Similarity=0.172  Sum_probs=74.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------
Q 026948          121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-----------  189 (230)
Q Consensus       121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~-----------  189 (230)
                      +..++|.++++..++|+..++ .+.   .   .  ....+.-.|.+++++|+|++|++.|+..++....           
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~~~---~---~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-GLD---R---L--DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-ccc---c---c--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            688999999999999999887 222   1   1  1335666788999999999999999986422111           


Q ss_pred             -------------hCCc-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          190 -------------EGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       190 -------------~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                                   .+.. .+..+.++|.+-++...|+|.+|++.+++|+++.
T Consensus       154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~  205 (652)
T KOG2376|consen  154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC  205 (652)
T ss_pred             HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                         1121 2356789999999999999999999999997654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.11  E-value=0.0018  Score=35.48  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++.++|.+|..+|++++|..++++++.+.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            3566677777777777777777777666543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.08  E-value=0.03  Score=50.02  Aligned_cols=116  Identities=16%  Similarity=0.070  Sum_probs=87.5

Q ss_pred             CccHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948          111 DPKKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~  189 (230)
                      -+++.++.+.+.+|.++. ...|++.|..+..+++.+..+.+-......+.+-++.++.+.+... |...+++.++..+.
T Consensus        53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~  131 (608)
T PF10345_consen   53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET  131 (608)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence            456778999999999988 6799999999999999999885555556677777888888887777 99999999998865


Q ss_pred             hCCcccHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          190 EGEYSGSTEAYGAI-ADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       190 ~~~~~~~~~~~~~l-g~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+..+. ..+...+ .......+|+..|.+.++.......
T Consensus       132 ~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~  170 (608)
T PF10345_consen  132 YGHSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLAN  170 (608)
T ss_pred             cCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence            433332 2223333 2223333799999999999887764

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.0028  Score=50.43  Aligned_cols=99  Identities=22%  Similarity=0.241  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG----  191 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~----  191 (230)
                      ++....+.|.+.++.|+++.|+.-|+.+++...-      .+-.-++++.++++.|+|+.|+++....++..-+.-    
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg  216 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG  216 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence            5557888999999999999999999999985432      455668999999999999999999887765433210    


Q ss_pred             --------C------c-----ccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948          192 --------E------Y-----SGSTEAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       192 --------~------~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                              |      +     +....+.+..+-++.+.|+++.|.+..
T Consensus       217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                    0      0     123345566677888999999888754

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.013  Score=46.78  Aligned_cols=29  Identities=17%  Similarity=0.116  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      .+..+|.+|+...+|..|.++|++.-.+.
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~   74 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLH   74 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            45566777777777777777666655433

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.03  E-value=0.021  Score=54.01  Aligned_cols=96  Identities=14%  Similarity=0.056  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ++..+...|...|++++|...+.+..+.     +.......+..+...|.+.|++++|++.|++....    +- .....
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~-----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~Pdvv  720 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQ-----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RPTVS  720 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHH
Confidence            3444555566666666666666655431     11112335556666666666666666666654221    11 12344


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      .|..+...|.+.|++++|.+.|++..
T Consensus       721 tyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        721 TMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56666666666666666666666544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.031  Score=43.91  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +.+-+..++.-.|.|.-+.+.+++.++.     +++..+.....+|.+.++.||-+.|..+|+++-+...+.++-.....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~  253 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM  253 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence            5666788888899999999999998883     44556777889999999999999999999988777777777777888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ++.+.+.+|.-.++|.+|...|.+.+..
T Consensus       254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~  281 (366)
T KOG2796|consen  254 VLMNSAFLHLGQNNFAEAHRFFTEILRM  281 (366)
T ss_pred             HHhhhhhheecccchHHHHHHHhhcccc
Confidence            9999999999999999999999887654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.0025  Score=51.82  Aligned_cols=86  Identities=24%  Similarity=0.286  Sum_probs=65.8

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Q 026948          127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  206 (230)
Q Consensus       127 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~  206 (230)
                      +....+|..|+..++-.+.+     +..........+|.|++..|+|++|+..|+-..+-      +...+..+.+++.|
T Consensus        32 fls~rDytGAislLefk~~~-----~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAcc  100 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNL-----DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLACC  100 (557)
T ss_pred             HHhcccchhHHHHHHHhhcc-----chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHHH
Confidence            34567888888876655432     33334466778999999999999999999886542      23457889999999


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 026948          207 YTELGDLERAARFYDKY  223 (230)
Q Consensus       207 y~~~g~~~~A~~~~~~a  223 (230)
                      +.-+|.|.+|...-.++
T Consensus       101 ~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen  101 KFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999877665

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.97  E-value=0.024  Score=53.68  Aligned_cols=98  Identities=10%  Similarity=0.069  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      .++..+...|.+.|++++|...|.+..+.  .  -.+ ....+..+...+.+.|++++|.+.+++..+..     .....
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~--G--v~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-----~~pd~  684 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKK--G--VKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQG-----IKLGT  684 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C--CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCH
Confidence            35666777788888888888888876651  1  111 24567778888889999999999998865431     23356


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .+|..+...|.+.|++++|...|++..+
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            7889999999999999999999987754

>smart00028 TPR Tetratricopeptide repeats

Probab=96.95  E-value=0.0013  Score=33.04  Aligned_cols=30  Identities=27%  Similarity=0.497  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++.++|.++..+|++++|..++++++++.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            455666666666666666666666665443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.95  E-value=0.0025  Score=53.86  Aligned_cols=109  Identities=13%  Similarity=0.061  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhCC-
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGE-  192 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~-~~~~~~~-  192 (230)
                      ++.-.+..++..||+.+|...+...- +.+..+    ..-....+.+|+|-++++.|.|.-+..+|.+|++ ...+... 
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g  320 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG  320 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            34456677888888888887664332 112211    1112444568999999999999999999999995 4444221 


Q ss_pred             ----------cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          193 ----------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       193 ----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                                .......++|.|..|...|+.-.|.++|.++...+-
T Consensus       321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence                      113456899999999999999999999999988763

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.94  E-value=0.036  Score=35.00  Aligned_cols=73  Identities=21%  Similarity=0.334  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      +......|.-++...+.++|+..+.++++-   ..+.+..-.++-.+..+|...|+|.+++++-.+=+.+.++.++
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k---~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled   78 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEK---ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED   78 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            345566777788888999999999998873   3345556677888888899999999999998887777766554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.89  E-value=0.028  Score=47.23  Aligned_cols=92  Identities=17%  Similarity=0.046  Sum_probs=75.2

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 026948          123 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  202 (230)
Q Consensus       123 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  202 (230)
                      +-..+...++++.|++.+++..+.      .   +.....++.++...++-.+|++.+.+++...      |.....+..
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~------~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~  239 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER------D---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNL  239 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc------C---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHH
Confidence            334455678999999999987762      1   2344568899999999999999999998654      666888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          203 IADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       203 lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+..+...++++.|+...+++.+..+.
T Consensus       240 Qa~fLl~k~~~~lAL~iAk~av~lsP~  266 (395)
T PF09295_consen  240 QAEFLLSKKKYELALEIAKKAVELSPS  266 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            999999999999999999999987754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.88  E-value=0.014  Score=53.06  Aligned_cols=95  Identities=12%  Similarity=0.115  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----------------------------------
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG----------------------------------  162 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~----------------------------------  162 (230)
                      ..+++.+...|.+.|++++|+..|.+..+.  ....   ....+..                                  
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~p---d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~  364 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSI---DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT  364 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence            346777777888888888888877765431  1000   1223334                                  


Q ss_pred             -HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          163 -LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       163 -lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                       +...|.+.|+.++|.+.|++..         ..+..+|+.+...|...|+.++|++.|++..+
T Consensus       365 ~Li~~y~k~G~~~~A~~vf~~m~---------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        365 ALVDLYSKWGRMEDARNVFDRMP---------RKNLISWNALIAGYGNHGRGTKAVEMFERMIA  419 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC---------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             4444445555555555554421         11234566677777777777777777776554

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=96.85  E-value=0.039  Score=43.44  Aligned_cols=92  Identities=20%  Similarity=0.169  Sum_probs=78.3

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948          132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  211 (230)
Q Consensus       132 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  211 (230)
                      .-...++.+.+|...+++.+...........+|.-|+..|+|++|+++|+.+....++.+=......++..+..|+...|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            45567888999999999887777788888899999999999999999999998887776666667788999999999999


Q ss_pred             CHHHHHHHHHHH
Q 026948          212 DLERAARFYDKY  223 (230)
Q Consensus       212 ~~~~A~~~~~~a  223 (230)
                      +.+..+.+.-+.
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            999888765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.85  E-value=0.044  Score=43.97  Aligned_cols=91  Identities=22%  Similarity=0.288  Sum_probs=69.9

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH----hCCcc----cH
Q 026948          128 LRNQDLEKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER----EGEYS----GS  196 (230)
Q Consensus       128 ~~~g~~~~A~~~~~~al~l~~~~~--~~~~~~~~~~~lg~~~~~~~-~~~~Ai~~~~~al~~~~~----~~~~~----~~  196 (230)
                      ..+||++.|..++.|+-.+.....  .....+..+++.|......+ ++++|+.++++|.++...    ....+    ..
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            357999999999999988774222  22336778999999999999 999999999999999644    22222    34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH
Q 026948          197 TEAYGAIADCYTELGDLERAAR  218 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~  218 (230)
                      ..++..++.+|...+.++...+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH
Confidence            5678889999999998864444

It is also involved in sporulation [].

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.0091  Score=48.12  Aligned_cols=84  Identities=14%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          142 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       142 ~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      ++++....-+.+...+.-+-.-|+-|+..++|..|+..|.++|+.  +..|+...+..|.|.+-|...+|+|..|+....
T Consensus        66 qslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs  143 (390)
T KOG0551|consen   66 QSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCS  143 (390)
T ss_pred             HHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            344444333455557777888899999999999999999999765  456666778899999999999999999999999


Q ss_pred             HHHHhh
Q 026948          222 KYISRL  227 (230)
Q Consensus       222 ~al~~~  227 (230)
                      +|+.+-
T Consensus       144 ~al~~~  149 (390)
T KOG0551|consen  144 AALKLK  149 (390)
T ss_pred             HHHhcC
Confidence            998754

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.83  E-value=0.02  Score=38.73  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----CC-------HHHHHHHHHHHHHHHHHhC
Q 026948          123 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----GK-------YREAIKYHSMVLQISEREG  191 (230)
Q Consensus       123 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----~~-------~~~Ai~~~~~al~~~~~~~  191 (230)
                      ++..++..||+-+|++..+..+....+..+.   ...+..-|.++..+    .+       ...|+++|.++..+.    
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls----   74 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS----   74 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC----
Confidence            4667889999999999999988855542222   23444556666543    33       344666666666664    


Q ss_pred             CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 026948          192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  230 (230)
Q Consensus       192 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  230 (230)
                        |..+..++.+|.=+.....|+++..-.+++|.+..+|
T Consensus        75 --p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~pd  111 (111)
T PF04781_consen   75 --PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNPD  111 (111)
T ss_pred             --hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCC
Confidence              6668888888888777888899998888888776543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.79  E-value=0.055  Score=40.32  Aligned_cols=91  Identities=16%  Similarity=0.147  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH
Q 026948          135 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  214 (230)
Q Consensus       135 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  214 (230)
                      +-++.++.-++-+++.........++..+|..|.+.|++++|++.|.++.+..   .......+.+.++-.+....+++.
T Consensus        14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~   90 (177)
T PF10602_consen   14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWS   90 (177)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHH
Confidence            33445556666666666777788999999999999999999999999976653   222346678888999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 026948          215 RAARFYDKYISRLE  228 (230)
Q Consensus       215 ~A~~~~~~al~~~~  228 (230)
                      ....+..++-...+
T Consensus        91 ~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   91 HVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.75  E-value=0.0045  Score=49.92  Aligned_cols=96  Identities=15%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..-.-.++...++++.|...++...+.    .+.  ..-.....+.+....|  .+.+|...|+...+.      .+..+
T Consensus       134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~  201 (290)
T PF04733_consen  134 LALAVQILLKMNRPDLAEKELKNMQQI----DED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTP  201 (290)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHCC----SCC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCH
Confidence            334567888999999998877765432    222  2222233334444444  699999999984322      13456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..++.++.++..+|+|++|...++++++.-
T Consensus       202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~  231 (290)
T PF04733_consen  202 KLLNGLAVCHLQLGHYEEAEELLEEALEKD  231 (290)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            788999999999999999999999987643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.71  E-value=0.019  Score=51.02  Aligned_cols=97  Identities=18%  Similarity=0.145  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..+...|..+...++.++|..+..++-++.      +..+..++-.|..+..+|...+|...|..|+.++      |+.+
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld------P~hv  718 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD------PDHV  718 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC------CCCc
Confidence            345577888889999999999999998855      4488899999999999999999999999999996      8888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHH--HHHHHHHh
Q 026948          198 EAYGAIADCYTELGDLERAAR--FYDKYISR  226 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~--~~~~al~~  226 (230)
                      .+...+|.++.+.|+..-|..  ....++++
T Consensus       719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~  749 (799)
T KOG4162|consen  719 PSMTALAELLLELGSPRLAEKRSLLSDALRL  749 (799)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence            999999999999999888877  77777664

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.66  E-value=0.1  Score=38.75  Aligned_cols=104  Identities=23%  Similarity=0.236  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA-SLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~-~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ...+...|..+...+++..++..+.+++......      .......+. ++...|++++|+..+++++....   ....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~  165 (291)
T COG0457          95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALELDP---ELNE  165 (291)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---Cccc
Confidence            3456678888888889999999998888744331      222233333 88999999999999999966320   0024


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ....+...+..+...++++.|+..+.+++.....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         166 LAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            5667777788889999999999999999887653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.61  E-value=0.0044  Score=31.91  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +++++|.++...|++++|++.|++.++..
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            67888888888899999999998887654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.61  E-value=0.033  Score=50.62  Aligned_cols=95  Identities=9%  Similarity=0.011  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      .+++.+...|...|+.++|++.|++..+.  .  ..+ ....+..+-..+...|+.++|.++|+...+.   .+..| ..
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g--~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~---~g~~p-~~  462 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAE--G--VAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSEN---HRIKP-RA  462 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHh--C--CCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh---cCCCC-Cc
Confidence            46777777888888888888888776542  1  111 1233444555555666666666666554321   11111 22


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          198 EAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      ..|..+...|.+.|+.++|.+.++
T Consensus       463 ~~y~~li~~l~r~G~~~eA~~~~~  486 (697)
T PLN03081        463 MHYACMIELLGREGLLDEAYAMIR  486 (697)
T ss_pred             cchHhHHHHHHhcCCHHHHHHHHH
Confidence            344445555555555555554444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.58  E-value=0.34  Score=40.15  Aligned_cols=94  Identities=18%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+..-+..-.++||++.+-.+..++-+..++  +   .-......+.....+|+++.|..-..+.++..      |....
T Consensus       120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~--~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~------pr~~~  188 (400)
T COG3071         120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGD--D---TLAVELTRARLLLNRRDYPAARENVDQLLEMT------PRHPE  188 (400)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHhccCCC--c---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC------cCChH
Confidence            4445556677889999999999998885332  1   33455667788889999999999999998886      77889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKY  223 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~a  223 (230)
                      +..-.-.+|...|++........+.
T Consensus       189 vlrLa~r~y~~~g~~~~ll~~l~~L  213 (400)
T COG3071         189 VLRLALRAYIRLGAWQALLAILPKL  213 (400)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999999999999999888776654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.56  E-value=0.026  Score=49.60  Aligned_cols=95  Identities=17%  Similarity=0.054  Sum_probs=75.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      ++.-+..-..+++.++|+..++++++.++.      ....+.-+|.++-++++.+.|.+.|...++..      |.....
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c------P~~ipL  721 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKC------PNSIPL  721 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccC------CCCchH
Confidence            444455566678888999888888886555      77788889999999999999999999888876      777778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      |..++.+-+..|+.-+|...++++.-.
T Consensus       722 WllLakleEk~~~~~rAR~ildrarlk  748 (913)
T KOG0495|consen  722 WLLLAKLEEKDGQLVRARSILDRARLK  748 (913)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            888888888888888888888877543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.53  E-value=0.021  Score=49.33  Aligned_cols=88  Identities=19%  Similarity=0.121  Sum_probs=69.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948          130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  209 (230)
Q Consensus       130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  209 (230)
                      ..+.+.|.+......+.+|+      ....+...|.++...|+.++|++.|++++....+  -..-..-+++.+|.++..
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~  317 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMF  317 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHH
Confidence            34566677777777765544      6677889999999999999999999998853322  123345679999999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 026948          210 LGDLERAARFYDKYIS  225 (230)
Q Consensus       210 ~g~~~~A~~~~~~al~  225 (230)
                      +.+|++|..++.+..+
T Consensus       318 ~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  318 QHDWEEAAEYFLRLLK  333 (468)
T ss_pred             HchHHHHHHHHHHHHh
Confidence            9999999999998776

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.11  Score=44.34  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ..++..++..|...+.++++.+|.....+.++.++.-+.....+-.+.-+|.+....|+..++.+...-++++.++..|.
T Consensus       442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di  521 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI  521 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence            34555777888888999999999999999999986655555566778889999999999999999999999999999998


Q ss_pred             ccHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 026948          194 SGSTEAYGAIADCYTELGD--LERAARFYDK  222 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~  222 (230)
                      +-.-.+.--+-..|...|+  -+.+.+.|.+
T Consensus       522 ~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  522 PVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             hHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            8777777777888888888  5555554443

>PLN03077 Protein ECB2; Provisional

Probab=96.38  E-value=0.069  Score=49.75  Aligned_cols=99  Identities=15%  Similarity=0.169  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      +..+++.+...|...|+.++|++.|++..+.  .  ..+ ....+..+-..+.+.|+.++|.++|+...+.   .+..| 
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g--~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~---~gi~P-  623 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVES--G--VNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEK---YSITP-  623 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--C--CCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHH---hCCCC-
Confidence            3446778888888999999999999886652  1  111 2234555556788889999999999885422   22223 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKY  223 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~a  223 (230)
                      ....|..+...+.+.|++++|.+.+++.
T Consensus       624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        624 NLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            3567888899999999999999888764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.36  E-value=0.1  Score=44.53  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHHHHHhcC-------------------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          132 DLEKAFTEFKAALELAQNVK-------------------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       132 ~~~~A~~~~~~al~l~~~~~-------------------~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      ...+|.++|+++++..+..-                   +......+...++.+..+.|+.++|++.++..++...    
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----  290 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----  290 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----
Confidence            46777788888887665321                   1111244567899999999999999999999876541    


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ..+...++.++-.++..++.|.++.....+.-+
T Consensus       291 ~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  291 NLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            124567899999999999999999888777644

The molecular function of this protein is uncertain.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.086  Score=42.04  Aligned_cols=85  Identities=24%  Similarity=0.184  Sum_probs=65.7

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---QDLEKAFTEFKAALELAQNVKDPIEEK  157 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~l~~~~~~~~~~~  157 (230)
                      .+...+...|.++....++                +...+..+|.+++.+   ....++...+++++++.+.      +.
T Consensus       170 ~~~~~A~~AY~~A~rL~g~----------------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~------~i  227 (287)
T COG4235         170 GRASDALLAYRNALRLAGD----------------NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA------NI  227 (287)
T ss_pred             cchhHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc------cH
Confidence            3566777777888877765                333455566665543   3467888899999995444      88


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ++.+.||..++..|+|.+|+..++.-++..
T Consensus       228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            999999999999999999999999988775

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.30  E-value=0.016  Score=31.30  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~  189 (230)
                      .++..||.+....++|++|+..|++++++.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34566777777777777777777777777544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.29  E-value=0.15  Score=36.41  Aligned_cols=70  Identities=23%  Similarity=0.219  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCcc
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYS  194 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~  194 (230)
                      +...++..+...|++++|+..+.+++...+-      ...++..+-.++...|++.+|++.|++..+...+ .+..|
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPY------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence            4456777888999999999999999996554      7788899999999999999999999999776654 34444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.25  E-value=0.33  Score=36.39  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=85.4

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +..++...|++++.-.-.               .+...++.+++..+..+++..|...+++..+..+...    .+....
T Consensus       104 r~~EA~~hy~qalsG~fA---------------~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r----~pd~~L  164 (251)
T COG4700         104 RYHEAVPHYQQALSGIFA---------------HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR----SPDGHL  164 (251)
T ss_pred             hhhhhHHHHHHHhccccC---------------CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC----CCCchH
Confidence            445555566666654332               1444788999999999999999999988777443211    233445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .+|.++-.+|.+.+|...|+.++...      |+ +.+....+.-..++|+.++|..-|....+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~y------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYY------PG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhC------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            67888999999999999999999885      43 45666678888899988888877765544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.039  Score=42.84  Aligned_cols=116  Identities=12%  Similarity=0.010  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCc-----cHHHHHHHHHHHHHHHhCCCHHHHH
Q 026948           63 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-----KKEELLSRLKTGKNFLRNQDLEKAF  137 (230)
Q Consensus        63 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~g~~~~A~  137 (230)
                      +......+.++++.++...++.++...|+.++....+-   .-++...++     +....-.+++...++...|+|-+++
T Consensus       174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L---~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl  250 (329)
T KOG0545|consen  174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNL---QLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL  250 (329)
T ss_pred             hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH---HhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence            33444567888999999999999999999888765431   000101111     1222335668899999999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          138 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       138 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ++....+..      .+.+..+|+..|.++...=+.++|...|.+++++.
T Consensus       251 eh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  251 EHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             HHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            999999984      44488999999999999999999999999999986

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.17  Score=41.30  Aligned_cols=94  Identities=15%  Similarity=0.103  Sum_probs=68.6

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  201 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  201 (230)
                      ..+..+...|-|++|.....+++++.+.      .+++....+.++.-.+++.++.+...+.-..=++  ........|.
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyW  251 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYW  251 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhH
Confidence            4566677888899999888888886544      6778888888888889999888888774332211  1122344566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Q 026948          202 AIADCYTELGDLERAARFYDKY  223 (230)
Q Consensus       202 ~lg~~y~~~g~~~~A~~~~~~a  223 (230)
                      .-+.++.+-++|+.|.+.|++-
T Consensus       252 H~Al~~iE~aeye~aleIyD~e  273 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDRE  273 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHH
Confidence            6788888889999999988654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.21  E-value=0.03  Score=44.99  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=26.0

Q ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          160 ARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       160 ~~~lg~~~~~-~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      |...|..-+. .++.+.|...|+.+++..      +.....|..-..-....|+.++|...|++++.
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f------~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~   98 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKF------PSDPDFWLEYLDFLIKLNDINNARALFERAIS   98 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3333444333 334444555555555443      33333444444444455555555555555543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.16  E-value=0.012  Score=31.78  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++|..+|.+-...++|++|+..|++++++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.087  Score=46.28  Aligned_cols=102  Identities=13%  Similarity=0.067  Sum_probs=81.6

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 026948          121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  200 (230)
Q Consensus       121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  200 (230)
                      .+-|...++..+|..++++|...+...+.-......+....++..||....+.|.|.++++.|-+..      |..+-.-
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------~~~~l~q  431 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------RQSPLCQ  431 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------cccHHHH
Confidence            3567778889999999999999998777644455568889999999999999999999999997775      4455555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          201 GAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       201 ~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+-.+....|+-++|+....+...+..
T Consensus       432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            6666667788888999988887766553

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.03  E-value=0.009  Score=50.35  Aligned_cols=111  Identities=14%  Similarity=0.201  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +..++........+..++..|.++++..++                .+...-+++..+...++|..|+....+++++.  
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn----------------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--   68 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPN----------------CAIYFANRALAHLKVESFGGALHDALKAIELD--   68 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCc----------------ceeeechhhhhheeechhhhHHHHHHhhhhcC--
Confidence            344455555556778888899999988875                22233356778889999999999999999954  


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  208 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  208 (230)
                          +....+|+..|.++...+.+.+|...|++...+.      |....+...+..|-.
T Consensus        69 ----P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~------Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   69 ----PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA------PNDPDATRKIDECNK  117 (476)
T ss_pred             ----chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC------cCcHHHHHHHHHHHH
Confidence                4488999999999999999999999999998876      777777777766643

>PRK10941 hypothetical protein; Provisional

Probab=95.98  E-value=0.081  Score=42.13  Aligned_cols=72  Identities=14%  Similarity=0.080  Sum_probs=63.6

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +.....+.+.++=.++.+.++++.|+.+.+..+.+.      |+.+.-+...|.+|.++|.+..|...++..++..++
T Consensus       176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFD------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            445567788999999999999999999999999986      777888999999999999999999999998886654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.24  Score=39.03  Aligned_cols=90  Identities=14%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHh--C--CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          119 SRLKTGKNFLR--N--QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       119 ~~~~~g~~~~~--~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ++..+|..+..  .  +.+.+|.-.|++.-+   +   .+..+..+.+.+.++..+|+|++|...++.++.-.      +
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~---k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------~  238 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE---K---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------A  238 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhc---c---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------C
Confidence            34445554432  2  346666666665433   2   22356678899999999999999999999997654      6


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                      ..++++.|+-.+-...|.-.++..-+
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            67899999998888888876665544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.92  E-value=0.4  Score=43.72  Aligned_cols=107  Identities=20%  Similarity=0.241  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHhcCChHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALE----LAQNVKDPIE----------EKKAARGLGASLQRQGKYREAIKYHSMVL  184 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~----l~~~~~~~~~----------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al  184 (230)
                      ++++.|.-+...++.+.|+++|+++-.    +..-..+.+.          ....+..-|...-..|+.+-|+.+|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            677788888888999999999987642    1111111111          12345666778888999999999998765


Q ss_pred             HHHHH---------------hCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          185 QISER---------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       185 ~~~~~---------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      +....               .....++-.+.+.+|+-|+..|+..+|+..|.+|-.
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            43322               011233345677799999999999999999998754

>smart00028 TPR Tetratricopeptide repeats

Probab=95.90  E-value=0.013  Score=29.11  Aligned_cols=30  Identities=30%  Similarity=0.556  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .++..+|.++...+++++|+.++++++++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            357788999999999999999999988763

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.85  E-value=0.084  Score=30.81  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .+++.++..+.+.|+|++|.++.+.++++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e   31 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE   31 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            467888999999999999999999999885

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.82  E-value=0.063  Score=47.42  Aligned_cols=101  Identities=24%  Similarity=0.270  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----C-CHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----G-KYREAIKYHSMVLQ  185 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----~-~~~~Ai~~~~~al~  185 (230)
                      .+.+...+|.+|..-     .|.++|+.++..+.+-.++. .......+.+.+|.+|.+.    . ++..|+.+|.++-+
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            445566777777643     68999999999887721110 0111344678888888874    3 77889999988855


Q ss_pred             HHHHhCCcccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 026948          186 ISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYIS  225 (230)
Q Consensus       186 ~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~  225 (230)
                      .        +.+++.+.+|.+|..-.   |+.+|.++|..|..
T Consensus       322 ~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  322 L--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             c--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence            4        35678888999887665   67789988888864

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.70  E-value=0.41  Score=32.99  Aligned_cols=107  Identities=13%  Similarity=0.081  Sum_probs=71.6

Q ss_pred             HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---ChH--
Q 026948           80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---DPI--  154 (230)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~--  154 (230)
                      ...++.+..+++++.+....   ++..+ ..+.+--++..+-.++..+..+|+|++++..-.+++..+++.+   ...  
T Consensus        22 ~g~~~eAa~s~r~AM~~srt---iP~eE-aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk   97 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRT---IPAEE-AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK   97 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTT---S-TTS----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcc---CChHh-hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence            34566666777777766543   11111 1122333555666888999999999999999999999988643   222  


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948          155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      .-..+-++.+..+-..|+.++|+..|+.+-++....
T Consensus        98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            234457888899999999999999999998876543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.68  E-value=0.029  Score=48.70  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948          124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  203 (230)
Q Consensus       124 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  203 (230)
                      |..+...|+...|+.++..|+-..+.-     .-....+|+++....|....|-..+.+++.+.      ...+-.++.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~-----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~  682 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQ-----QDVPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSL  682 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhh-----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhc
Confidence            444567899999999999999844331     22347789999999999999999999999986      3445678899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          204 ADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       204 g~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      |..|..+.+.++|++.+++|++...
T Consensus       683 g~~~l~l~~i~~a~~~~~~a~~~~~  707 (886)
T KOG4507|consen  683 GNAYLALKNISGALEAFRQALKLTT  707 (886)
T ss_pred             chhHHHHhhhHHHHHHHHHHHhcCC
Confidence            9999999999999999999998654

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.63  E-value=0.31  Score=38.35  Aligned_cols=71  Identities=13%  Similarity=0.060  Sum_probs=60.8

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      .+........+|..|+..|++++|+.+++.+...+.+-+........+..+-.|+...|+.+..+.+.-+.
T Consensus       174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            44455566689999999999999999999999988887888888889999999999999999888776553

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.60  E-value=0.056  Score=50.23  Aligned_cols=104  Identities=15%  Similarity=0.130  Sum_probs=74.8

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  201 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  201 (230)
                      .....+...+.|++|+..|++..   .+.++......+.+.+|.....+-.-..--+.|.+|+......-+.+.-+--|.
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIR---ESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL  556 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHh---hcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence            34455666777888888887744   456666677788888888877643222222455555555555556677677788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          202 AIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       202 ~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..|.+|..+|+|++-+++|..|++.+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYS  583 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            899999999999999999999998764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.54  E-value=0.99  Score=36.24  Aligned_cols=102  Identities=12%  Similarity=0.044  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          119 SRLKTGKNFLR-NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       119 ~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      .+...|..-+. .++.+.|...|+.+++.++.      ...........+...++.+.|...|++++...   .......
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~  107 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLNDINNARALFERAISSL---PKEKQSK  107 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHH
Confidence            45566777455 67777799999999997766      34444444566778999999999999997653   1111134


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ..|......-...|+.+.....++++.+.++.
T Consensus       108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen  108 KIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            57777888888999999999999999887754

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03077 Protein ECB2; Provisional

Probab=95.52  E-value=0.15  Score=47.55  Aligned_cols=98  Identities=11%  Similarity=0.022  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---------------cC---------------ChHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---------------VK---------------DPIEEKKAARGLGASLQ  168 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------------~~---------------~~~~~~~~~~~lg~~~~  168 (230)
                      ++..+...|.+.|++++|+..|.+..+..-.               .+               +.......+..+-..|.
T Consensus       356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~  435 (857)
T PLN03077        356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS  435 (857)
T ss_pred             eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            5666777788888888888887765431100               00               00011223445556677


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          169 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       169 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      +.|++++|.+.|++..         .....+|..+...|...|+.++|+..|++...
T Consensus       436 k~g~~~~A~~vf~~m~---------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~  483 (857)
T PLN03077        436 KCKCIDKALEVFHNIP---------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL  483 (857)
T ss_pred             HcCCHHHHHHHHHhCC---------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            7777777777776521         11234677777777777777777777777654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.40  E-value=0.38  Score=43.86  Aligned_cols=107  Identities=14%  Similarity=0.117  Sum_probs=72.7

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      ++..++....+.+...|+                ...+....|.++.++|+.++|..+++ ++..-+.  +   .-..+.
T Consensus        24 qfkkal~~~~kllkk~Pn----------------~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~--~---D~~tLq   81 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKHPN----------------ALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKG--T---DDLTLQ   81 (932)
T ss_pred             HHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCC--C---chHHHH
Confidence            344455555555666665                34456667889999999999995544 3332222  1   345667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHH
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  217 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  217 (230)
                      -+-.+|.+++++++|...|++++...      |+ .+..+.+=.+|.+.++|.+=.
T Consensus        82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~------P~-eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen   82 FLQNVYRDLGKLDEAVHLYERANQKY------PS-EELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhC------Cc-HHHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999998775      55 556666666777777775433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.37  E-value=0.34  Score=30.69  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...-|.-++.+.+.++|+..++++++-.   .+.++...++-.+..+|...|+|++.+.+--+=+++.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~---~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~   74 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKI---TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE   74 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555668899999999999997664   34456677788888999999999999999877666654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.31  E-value=0.27  Score=41.30  Aligned_cols=104  Identities=18%  Similarity=0.070  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---C---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---D---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~---------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      ...+.+.-|..++++++|..|.--|.-++++..+..   .         ......+...+..||.+.++.+-|+..-.++
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            444566678888999999999999999999886521   1         1112345677899999999999999999999


Q ss_pred             HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      |.+.      |....-+..-|.|+..+.+|.+|...+.-+.-
T Consensus       255 I~ln------P~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  255 INLN------PSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhcC------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9886      77788888899999999999999887665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.27  E-value=0.26  Score=44.82  Aligned_cols=87  Identities=18%  Similarity=0.326  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHhCCccc----------HHHHHHHHHH
Q 026948          140 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV----LQISEREGEYSG----------STEAYGAIAD  205 (230)
Q Consensus       140 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a----l~~~~~~~~~~~----------~~~~~~~lg~  205 (230)
                      +.+|+++++. .|.......|++.+.-+...+|-+.|++||+|+    .++.+-..+.|.          ....|.-.|.
T Consensus       842 w~eA~eiAE~-~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq  920 (1416)
T KOG3617|consen  842 WSEAFEIAET-KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ  920 (1416)
T ss_pred             HHHHHHHHhh-ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence            3344444433 355556778999999999999999999999986    333333333332          2345555799


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhh
Q 026948          206 CYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       206 ~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..+..|+.+.|+.+|..|-+.+
T Consensus       921 YlES~GemdaAl~~Y~~A~D~f  942 (1416)
T KOG3617|consen  921 YLESVGEMDAALSFYSSAKDYF  942 (1416)
T ss_pred             HHhcccchHHHHHHHHHhhhhh
Confidence            9999999999999999998765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.21  E-value=0.7  Score=36.51  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          159 AARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       159 ~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+..|+..+..    .+.+.+|.-+|+.-   .++   .+..+.....++.|...+|+|++|....+.+++...
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~---s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEEL---SEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHH---hcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            34445555443    34567777777663   221   244677889999999999999999999999997543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.21  E-value=0.067  Score=31.22  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++++.+|..+.++|+|++|..+.+.++++-+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP   32 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP   32 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence            5788899999999999999999999998654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.19  E-value=0.089  Score=47.73  Aligned_cols=90  Identities=24%  Similarity=0.272  Sum_probs=67.5

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 026948          128 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  207 (230)
Q Consensus       128 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  207 (230)
                      ...++|.+|.....+.++-.++      ...+...-|.++.++|++++|..+++. +...     .+.+-..+-.+-.||
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~-----~~~D~~tLq~l~~~y   87 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEA-LYGL-----KGTDDLTLQFLQNVY   87 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhh-hccC-----CCCchHHHHHHHHHH
Confidence            3457888888888887774333      445555667789999999999966654 3322     123456788899999


Q ss_pred             HHcCCHHHHHHHHHHHHHhhhc
Q 026948          208 TELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       208 ~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ..+|++++|...|++++..+++
T Consensus        88 ~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   88 RDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHhhhhHHHHHHHHHHhhCCc
Confidence            9999999999999999987653

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.19  E-value=0.014  Score=47.23  Aligned_cols=85  Identities=16%  Similarity=0.217  Sum_probs=66.2

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      +..+.+++.+..++...+.                .+..+-.+|.++..+++...|+..+..++++.+.      ....|
T Consensus       128 G~~~~ai~~~t~ai~lnp~----------------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~y  185 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPP----------------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGY  185 (377)
T ss_pred             cchhhhhcccccccccCCc----------------hhhhcccccceeeeccCCchhhhhhhhhhccCcc------ccccc
Confidence            3456666666666665554                3445557899999999999999999999995443      66667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      -..|...+.+|++.+|-+++..+.++.
T Consensus       186 kfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  186 KFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             chhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            778888899999999999999998774

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.17  E-value=1.7  Score=38.58  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ...+++-+.-+++.++|..|+++|+.++........+...+....+++.||..+.+.|+|.++++.|-+.
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~  423 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV  423 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            3457777888899999999999999999887655555566888999999999999999999999998653

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=1.4  Score=35.32  Aligned_cols=133  Identities=13%  Similarity=0.109  Sum_probs=86.6

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+..+..+.+.+.....          .+.....+.+..++|..|.+.++-+.+.++..+.++-+-..+-+.+.--+-..
T Consensus        91 neeki~Elde~i~~~ee----------dngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiR  160 (412)
T COG5187          91 NEEKIEELDERIREKEE----------DNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIR  160 (412)
T ss_pred             hHHHHHHHHHHHHHHhh----------cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            34455555555554443          12244567788899999999999999999999988877777776666667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +|.+|..+.=.++.++...   .+.++.+|=......-...|.-.....++.+|...+-..+..++
T Consensus       161 lg~~y~d~~vV~e~lE~~~---~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         161 LGLIYGDRKVVEESLEVAD---DIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHhhccHHHHHHHHHHHH---HHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            8888866655555444433   35555554332233333346666677788888887776665543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.97  E-value=0.99  Score=38.72  Aligned_cols=106  Identities=15%  Similarity=0.063  Sum_probs=85.5

Q ss_pred             cHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q 026948          113 KKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDP-IEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER  189 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~-~~~~~~~~~lg~~~~~~~-~~~~Ai~~~~~al~~~~~  189 (230)
                      ...++.+.+.+|.+.+ ...|.+.|..+++++..+.+.++.. ...-.++.-++.+|.... .+..|...+++++++...
T Consensus        42 ~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~  121 (629)
T KOG2300|consen   42 FLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS  121 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence            3457778889998754 5799999999999999999887755 446667888899988876 889999999999998743


Q ss_pred             hCCcccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948          190 EGEYSGSTEAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       190 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                      .+  -........++..+.-..|+..|.+..
T Consensus       122 ~p--~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  122 VP--YWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             Cc--hhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            22  355667788999999999999998764

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.92  E-value=0.49  Score=38.86  Aligned_cols=114  Identities=16%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh-
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISERE-  190 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~-~~~~~-  190 (230)
                      .......++..+.+.+..|+++.|...+.++.........  ..+......+......|+..+|+..++..++ ..... 
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~--~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~  219 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES--LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI  219 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            3445667889999999999999999999887774432111  1455667778889999999999999998887 22211 


Q ss_pred             --------------------------CCcccHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhh
Q 026948          191 --------------------------GEYSGSTEAYGAIADCYTEL------GDLERAARFYDKYISRLE  228 (230)
Q Consensus       191 --------------------------~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~  228 (230)
                                                ......+.++..+|.-....      ++.+++...|+++.++.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~  289 (352)
T PF02259_consen  220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP  289 (352)
T ss_pred             ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence                                      11234556777788887777      888999999999987654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.87  E-value=0.8  Score=34.48  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .-...+...+|.+..++|.+|+|+..+...       .+....+..-.-.|+++...|+-++|...|++++...
T Consensus       123 ~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         123 NLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            334456668999999999999888765432       2444455556678999999999999999999998874

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.83  E-value=0.24  Score=43.78  Aligned_cols=93  Identities=29%  Similarity=0.400  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHh
Q 026948          119 SRLKTGKNFLRNQ-----DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISERE  190 (230)
Q Consensus       119 ~~~~~g~~~~~~g-----~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~Ai~~~~~al~~~~~~  190 (230)
                      +.+.+|.+|....     +++.|..+|.++-..-        .+.+.+.+|.++....   |+..|.++|..|.+     
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-----  356 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-----  356 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----
Confidence            4667888888743     7788999998887732        5577889998887655   68899999999854     


Q ss_pred             CCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 026948          191 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL  227 (230)
Q Consensus       191 ~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~  227 (230)
                         .+...+.+++|.||..    .-+.+.|..+|.++-+.-
T Consensus       357 ---~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  357 ---AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             ---cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence               4467899999999874    358899999999987653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.66  E-value=0.9  Score=41.10  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=59.2

Q ss_pred             HHHHHHHhCCCHHHHHHHH-------------------HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEF-------------------KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~-------------------~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      ..|.-+.+.|+++.|+.+|                   .+++.+.+++.+.......|-.++.-|...|+|+-|.+.|.+
T Consensus       711 ~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e  790 (1636)
T KOG3616|consen  711 AWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE  790 (1636)
T ss_pred             HHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence            3455556667777776654                   344445554444444444455567777777777777766543


Q ss_pred             H------H-------------HHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948          183 V------L-------------QISEREGEYSGSTEAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       183 a------l-------------~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                      +      +             ++..+--.+......|...+.-..+.|+|.+|...|
T Consensus       791 ~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  791 ADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             cchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            2      2             222222233445566777777788888888877665

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.61  E-value=0.055  Score=26.36  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      +..++|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34455555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.58  E-value=1.9  Score=34.52  Aligned_cols=108  Identities=17%  Similarity=0.141  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh---c-----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          115 EELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQN---V-----KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  185 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~---~-----~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~  185 (230)
                      .-+..+++.|......+ +++.|..+++++.++.+.   .     +.......++..++.++...+.++...+ ..++++
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~  111 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence            34557889999999999 999999999999999633   1     1223456779999999999998875555 333444


Q ss_pred             HHHH-hCCcccHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          186 ISER-EGEYSGSTEAY-GAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       186 ~~~~-~~~~~~~~~~~-~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..+. .+++   +..+ ..+-.+.. .++.+.+.+.+.+++.-.
T Consensus       112 ~l~~e~~~~---~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  112 LLESEYGNK---PEVFLLKLEILLK-SFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHhCCCC---cHHHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence            3322 2332   3333 33333333 788888888888877644

It is also involved in sporulation [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.56  E-value=0.057  Score=26.30  Aligned_cols=24  Identities=29%  Similarity=0.278  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          158 KAARGLGASLQRQGKYREAIKYHS  181 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~  181 (230)
                      .+..++|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355677777777777777777664

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.53  E-value=1.7  Score=34.50  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCcccHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      .++.=+..+.+.|++..|.+...-.++.+.+.+...... ....+..+......-+ +-.+..+++++..+....+.+.+
T Consensus        12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp   90 (260)
T PF04190_consen   12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP   90 (260)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence            444556778888999999998877777777654443322 3356666666554333 46677788888885555566889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          198 EAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      ..+..+|..|.+.|++.+|..+|-
T Consensus        91 ~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   91 ELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHH
Confidence            999999999999999999998874

; PDB: 3LKU_E 2WPV_G.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.46  E-value=0.84  Score=36.62  Aligned_cols=96  Identities=20%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 026948          118 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-------KYREAIKYHSMVLQI  186 (230)
Q Consensus       118 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-------~~~~Ai~~~~~al~~  186 (230)
                      .+.+.+|..|..    ..+..+|..+|.++.+.-..    . ...+...+|..|..-.       +...|+.+|.++-..
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~----~-a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~  184 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV----E-AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL  184 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh----h-HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence            367778888876    45899999999999883211    1 1445777887776642       333788888887554


Q ss_pred             HHHhCCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948          187 SEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  226 (230)
Q Consensus       187 ~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  226 (230)
                      .        ...+..++|.+|..    ..++++|..+|+++-+.
T Consensus       185 ~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~  220 (292)
T COG0790         185 G--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ  220 (292)
T ss_pred             c--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence            3        57889999988865    45899999999998763

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=0.92  Score=37.97  Aligned_cols=108  Identities=11%  Similarity=-0.043  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .++.+...|-..|+...-...+...+..+.-..+....+...+.+-..|..-+.|++|-+.-.++.--  ........+.
T Consensus       171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~p--e~~snne~AR  248 (493)
T KOG2581|consen  171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYP--EAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCc--cccccHHHHH
Confidence            45566667777777666555666666555544466666667777777888888888887776665311  1111124556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+.+|.+..-+++|..|.+++-+|+...+
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkap  278 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAP  278 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence            677788888888888888888888877654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.37  E-value=1.7  Score=37.30  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948          129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  208 (230)
Q Consensus       129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  208 (230)
                      +.+++|.+...|++.+.      ..+..+.+....|..-..+|+.+.|...|+-|+.-..  .+.|  .-.|-..-+--.
T Consensus       449 qL~efDRcRkLYEkfle------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~--ldmp--ellwkaYIdFEi  518 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLE------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA--LDMP--ELLWKAYIDFEI  518 (677)
T ss_pred             HHhhHHHHHHHHHHHHh------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc--cccH--HHHHHHhhhhhh
Confidence            44566666666666666      4444666666666666677777777777766654321  1111  112222233344


Q ss_pred             HcCCHHHHHHHHHHHHHhhh
Q 026948          209 ELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       209 ~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..|++++|...|++.|+..+
T Consensus       519 ~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  519 EEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             hcchHHHHHHHHHHHHHhcc
Confidence            56677777777777666543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.33  E-value=1.5  Score=41.88  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=94.6

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-c-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-V-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  188 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~-~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~  188 (230)
                      -+.......+-+++...+..++...|...+.+++.+..- . .+.+.......+++.++...++++.|+++.+.|++..+
T Consensus      1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred             CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            344556667778888888888999999988888876542 1 24555666778999999999999999999999999777


Q ss_pred             HhCC--cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          189 REGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       189 ~~~~--~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ....  ......++..+++.+..++++..|....+....++.
T Consensus      1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred             hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence            6443  335677899999999999999999999998888764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.31  E-value=0.28  Score=37.05  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHH
Q 026948          155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF  219 (230)
Q Consensus       155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  219 (230)
                      ..+...+.+|..|. ..|.++|+..+.+++++....  ..-+++.+..|+.+|..+|++++|--+
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~~~~~e~AYiw  200 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQKLKNYEQAYIW  200 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence            35677888886665 669999999999999987432  244688999999999999999998643

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.27  E-value=0.12  Score=41.53  Aligned_cols=79  Identities=29%  Similarity=0.284  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      .++......+.-....|+.++|...|+-|+.+++.      .+.++..+|...-.-++.-+|-.+|-+|+.+.      |
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis------P  181 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTIS------P  181 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC------C
Confidence            45556667777788899999999999999998877      78889999999888899999999999999885      7


Q ss_pred             cHHHHHHHHHH
Q 026948          195 GSTEAYGAIAD  205 (230)
Q Consensus       195 ~~~~~~~~lg~  205 (230)
                      +...++.|.++
T Consensus       182 ~nseALvnR~R  192 (472)
T KOG3824|consen  182 GNSEALVNRAR  192 (472)
T ss_pred             CchHHHhhhhc
Confidence            77777766544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.24  E-value=1.4  Score=32.13  Aligned_cols=87  Identities=18%  Similarity=0.069  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      -+..+......-...++.+++...+....-+.++      ....-..-|..+...|++.+|+..++....-      .+.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~   76 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEER------APG   76 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCC
Confidence            4445667777777888999888887765555455      5666677889999999999999999996332      355


Q ss_pred             HHHHHHHHHHHHHHcCCHH
Q 026948          196 STEAYGAIADCYTELGDLE  214 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~  214 (230)
                      .+.+--.++.|+..+||.+
T Consensus        77 ~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   77 FPYAKALLALCLYALGDPS   95 (160)
T ss_pred             ChHHHHHHHHHHHHcCChH
Confidence            6667777888888888864

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=94.21  E-value=0.097  Score=43.98  Aligned_cols=29  Identities=17%  Similarity=0.226  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ...++.+|.+|.-+++|.+|+..|...+-
T Consensus       164 is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  164 ISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.14  E-value=0.36  Score=39.42  Aligned_cols=109  Identities=17%  Similarity=0.054  Sum_probs=74.2

Q ss_pred             ccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          107 EVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       107 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      +...++-+.+..++..--..++.+|+.+.....+++.+.--  ..+.+-.....--++......|-|++|.+.-++++++
T Consensus       127 dklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi  204 (491)
T KOG2610|consen  127 DKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI  204 (491)
T ss_pred             HHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence            34455666666666666677777888877777777755421  2233333333333566677888888888888888888


Q ss_pred             HHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  223 (230)
Q Consensus       187 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  223 (230)
                      .      +....+.+..+.+.+-.|+++++.+...+-
T Consensus       205 N------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  205 N------RFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             C------CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            6      666777788888888888888888876654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.11  E-value=1.2  Score=35.60  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ...++..+...+...|+++.+++.+++.+...      |.....|..+-.+|...|+...|+..|++.-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELD------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            56778899999999999999999999998885      888889999999999999999999999987664

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.97  E-value=1.5  Score=37.73  Aligned_cols=118  Identities=20%  Similarity=0.177  Sum_probs=89.5

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+..-..|+..+...|..            .=.-+..++.-|..-..+.+.+.|...+..|+-.+++  +.     ..-.
T Consensus       382 ~ertr~vyq~~l~lIPHk------------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK--~K-----lFk~  442 (677)
T KOG1915|consen  382 VERTRQVYQACLDLIPHK------------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK--DK-----LFKG  442 (677)
T ss_pred             HHHHHHHHHHHHhhcCcc------------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc--hh-----HHHH
Confidence            344455688888888862            1112335666677777889999999999999886665  22     2222


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .-..-.+.++++.....|++.+...      |....+|...|..-..+|+.+.|...|+-|++
T Consensus       443 YIelElqL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  443 YIELELQLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            2234557789999999999999885      88889999999999999999999999998876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.93  E-value=1.8  Score=41.87  Aligned_cols=97  Identities=15%  Similarity=0.169  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .|...|..++.+.+-+.|-..+.+|++..++    ..+.......+..-++.|+.+.+...|+-.+.-+      |...+
T Consensus      1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay------PKRtD 1635 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY------PKRTD 1635 (1710)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC------ccchh
Confidence            4445555555555555555555555554433    2233344445555566666666666666555443      55556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .|.-..+.-.+.|+.+.++..|++++.
T Consensus      1636 lW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1636 LWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            666666666677777777777777765

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.90  E-value=1.9  Score=31.96  Aligned_cols=103  Identities=15%  Similarity=0.162  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+.+.+..|.+..+.|+...|+.+|.++-.-.+.  +....-.+...-+..+...|-|++-..-.+.   +.  .+..|.
T Consensus        93 pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~--P~~~rd~ARlraa~lLvD~gsy~dV~srvep---La--~d~n~m  165 (221)
T COG4649          93 PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI--PQIGRDLARLRAAYLLVDNGSYDDVSSRVEP---LA--GDGNPM  165 (221)
T ss_pred             hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC--cchhhHHHHHHHHHHHhccccHHHHHHHhhh---cc--CCCChh
Confidence            3447778899999999999999999886652221  1122223344456677788888875554433   11  223456


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ...+...||.+-++.|++.+|..+|.+..+
T Consensus       166 R~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            677888899999999999999999988754

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.83  E-value=0.41  Score=45.44  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCCcc
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER--EGEYS  194 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~--~~~~~  194 (230)
                      .+..++.++...|++++|+.+-.++..+..+.  .+.+.....+.+++...+..++...|+..+.++..+..-  .++.|
T Consensus       975 ~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP 1054 (1236)
T KOG1839|consen  975 KYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHP 1054 (1236)
T ss_pred             HHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCC
Confidence            45578889999999999999999999887764  367778888999999999999999999999998765433  23467


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+..-.+++.++...++++.|+.+.+.|+++.+
T Consensus      1055 ~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1055 PTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred             chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            7777788999999999999999999999998543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.66  E-value=1.4  Score=35.14  Aligned_cols=131  Identities=8%  Similarity=0.054  Sum_probs=80.1

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      ..+++..|++.++.-+..          +..  -..++-.+-.+++.+++|++-.+.|.+.+...++.--.-....+.++
T Consensus        43 p~~Al~sF~kVlelEgEK----------geW--GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~  110 (440)
T KOG1464|consen   43 PKEALSSFQKVLELEGEK----------GEW--GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINS  110 (440)
T ss_pred             HHHHHHHHHHHHhccccc----------chh--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            455666777777665431          111  23366778889999999999999999999876642111111122222


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      +-..-...++-+--.+.|+..++..+...+.......-..+|.+|...++|.+-....++.-.
T Consensus       111 IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~  173 (440)
T KOG1464|consen  111 ILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ  173 (440)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence            222222334444455566666666555555555555667789999999998877766665443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.53  E-value=2.2  Score=35.71  Aligned_cols=104  Identities=18%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLR---NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---------QGKYREAIKYHSMVLQI  186 (230)
Q Consensus       119 ~~~~~g~~~~~---~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---------~~~~~~Ai~~~~~al~~  186 (230)
                      .....|..+.+   .|+.++|++.+..++.-     .....+..+.-+|.+|-+         ....++|+++|.++.++
T Consensus       181 i~~~yafALnRrn~~gdre~Al~il~~~l~~-----~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~  255 (374)
T PF13281_consen  181 IKFQYAFALNRRNKPGDREKALQILLPVLES-----DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI  255 (374)
T ss_pred             HHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence            34455666666   89999999999886552     222245566677777653         33578899999998865


Q ss_pred             HHHh--------------C-------------------------CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          187 SERE--------------G-------------------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       187 ~~~~--------------~-------------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ....              .                         +.......+-.++.+....|++++|+.+++++.+..
T Consensus       256 ~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  256 EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            4220              0                         000111122235666777889999999999988754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.48  E-value=3.1  Score=33.44  Aligned_cols=101  Identities=23%  Similarity=0.217  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------VL  184 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~---------------al  184 (230)
                      .+..+.-....|++.+|...+..++...++      ...+...++.++...|+.+.|...+..               -+
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i  210 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI  210 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcc------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            344556777889999999999999997666      467778889999999998777776653               13


Q ss_pred             HHHHH-------------hCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          185 QISER-------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       185 ~~~~~-------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ++..+             ...+|++...-+.++..+...|+++.|.+.+-..+..
T Consensus       211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            33332             2234667788889999999999999999887665543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.39  E-value=0.42  Score=41.35  Aligned_cols=96  Identities=15%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..-|.--+..+....|+..|.+++...+.      ....+.+.+.+++++   |+---|+..+..|+++.      +...
T Consensus       378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln------~s~~  445 (758)
T KOG1310|consen  378 KTEGNDGLYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLN------PSIQ  445 (758)
T ss_pred             HhhccchhhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCC------hHHH
Confidence            34444444556677888889888885443      677788888887774   56666888888888775      7888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+++.|++++.+++++.+|+.+..-+...++
T Consensus       446 kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  446 KAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            9999999999999999999998776555444

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.37  E-value=3.7  Score=33.52  Aligned_cols=110  Identities=12%  Similarity=0.097  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ...++..+|..|.+-|+-+.|.+.+.+..+-.-..+...+..-+...+|..|....=..   +..++|=.+.++.+|=..
T Consensus       103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~liE~GgDWeR  179 (393)
T KOG0687|consen  103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSLIEEGGDWER  179 (393)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCChhh
Confidence            45578899999999999999999999988866667777777777778888876543333   333444445555554332


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ....-..-|.-.....++.+|...|-.++..+.
T Consensus       180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence            333334446666778889999888877766543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.30  E-value=0.14  Score=39.39  Aligned_cols=55  Identities=13%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          168 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       168 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.+|.+-|.+.|.+++.+.      |.....|..+|...++.|+++.|...|++.+++-+
T Consensus         6 ~~~~D~~aaaely~qal~la------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp   60 (287)
T COG4976           6 AESGDAEAAAELYNQALELA------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP   60 (287)
T ss_pred             cccCChHHHHHHHHHHhhcC------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence            34566666666666666664      55566666666666666666666666666665543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=93.27  E-value=0.32  Score=39.27  Aligned_cols=62  Identities=11%  Similarity=0.156  Sum_probs=53.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.+.-....|+.++|...|+.|+.+.      |..+.++..+|...+.-++.=+|..+|-+|+.+.+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlala------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP  181 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALA------PTNPQILIEMGQFREMHNEIVEADQCYVKALTISP  181 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcC------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence            334444567899999999999999997      88899999999999999999999999999987654

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.10  E-value=4.9  Score=34.10  Aligned_cols=106  Identities=12%  Similarity=0.124  Sum_probs=71.4

Q ss_pred             HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026948           80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEEL--LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  157 (230)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~  157 (230)
                      +..+..+...|+.+++...++...........++...+  ...-.+..||..+++.+.|+++-.+.+-+.+.      ..
T Consensus       189 qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~------~f  262 (569)
T PF15015_consen  189 QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS------YF  262 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc------hh
Confidence            34566677778888888766544333221112222222  23447899999999999999999999885444      44


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      .-+..-+.+++...+|.+|-+-+--+.-+.--.+
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455567889999999999888877765554433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.96  E-value=7.3  Score=36.07  Aligned_cols=90  Identities=16%  Similarity=0.078  Sum_probs=74.4

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  201 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  201 (230)
                      -.|.+....|++++|++..+.++...+...... ...++..+|.+..-+|++++|..+..++.++.++.+.......+.+
T Consensus       463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~  541 (894)
T COG2909         463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL  541 (894)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            467788889999999999999998666532222 4567889999999999999999999999999888777666677778


Q ss_pred             HHHHHHHHcCC
Q 026948          202 AIADCYTELGD  212 (230)
Q Consensus       202 ~lg~~y~~~g~  212 (230)
                      ..+.+...+|+
T Consensus       542 ~~s~il~~qGq  552 (894)
T COG2909         542 QQSEILEAQGQ  552 (894)
T ss_pred             HHHHHHHHhhH
Confidence            88899999993

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.94  E-value=5.7  Score=34.42  Aligned_cols=64  Identities=13%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      ..++...+|.+..+.|+.++|++.+...++..+.    .+......++-.++...+.|.++...+.+-
T Consensus       258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~----~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN----LDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc----cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            4556778999999999999999999998875432    234567899999999999999999888873

The molecular function of this protein is uncertain.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.94  E-value=1.4  Score=38.19  Aligned_cols=79  Identities=19%  Similarity=0.125  Sum_probs=63.5

Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYSGSTEAYGAIADCYTELGD-LERAARFYDKYISR  226 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~  226 (230)
                      +.+|.....--+.-+|.++...|+...|..+|..+++-..... +.-..+.+++.+|..|+.+|. .+++..+..+|-+.
T Consensus       441 ~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~  520 (546)
T KOG3783|consen  441 KIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY  520 (546)
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence            3445555666677789999999999999999999875543333 333577899999999999999 99999999999876


Q ss_pred             h
Q 026948          227 L  227 (230)
Q Consensus       227 ~  227 (230)
                      +
T Consensus       521 ~  521 (546)
T KOG3783|consen  521 A  521 (546)
T ss_pred             c
Confidence            6

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.78  E-value=8.1  Score=35.78  Aligned_cols=133  Identities=16%  Similarity=0.098  Sum_probs=86.1

Q ss_pred             HHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026948           84 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  163 (230)
Q Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l  163 (230)
                      +.++..-+.++...+.           ......+......|....-.|++++|..+...+.+.+..++.......+....
T Consensus       475 e~a~~lar~al~~L~~-----------~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~  543 (894)
T COG2909         475 EEAEDLARLALVQLPE-----------AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQ  543 (894)
T ss_pred             HHHHHHHHHHHHhccc-----------ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3444444455555554           33344565777889999999999999999999999999888887777787777


Q ss_pred             HHHHHHcCCH--HHHHHHHHHH--------------------------------------HHHHHHhCCcc-cHHHHHHH
Q 026948          164 GASLQRQGKY--REAIKYHSMV--------------------------------------LQISEREGEYS-GSTEAYGA  202 (230)
Q Consensus       164 g~~~~~~~~~--~~Ai~~~~~a--------------------------------------l~~~~~~~~~~-~~~~~~~~  202 (230)
                      +.+...+|+.  .+....|...                                      +.+.......+ ...-+++.
T Consensus       544 s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~  623 (894)
T COG2909         544 SEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSM  623 (894)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHH
Confidence            7777777732  2222222211                                      11110011111 11123457


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          203 IADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       203 lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++.++...|++++|....+......
T Consensus       624 LA~l~~~~Gdl~~A~~~l~~~~~l~  648 (894)
T COG2909         624 LAELEFLRGDLDKALAQLDELERLL  648 (894)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            8999999999999998888776544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.76  E-value=5.2  Score=33.53  Aligned_cols=102  Identities=16%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ...++=..|....+|+.-+...+..-.+ +.+ +........+..|.++.+   .|+.++|++.+..++.-.     ...
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~-p~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~  215 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEAL-PTC-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENP  215 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhcc-Ccc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCC
Confidence            4556666788888998888776644332 111 123345566777778878   899999999999975442     355


Q ss_pred             HHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhh
Q 026948          196 STEAYGAIADCYTE---------LGDLERAARFYDKYISRL  227 (230)
Q Consensus       196 ~~~~~~~lg~~y~~---------~g~~~~A~~~~~~al~~~  227 (230)
                      .++.+..+|.+|..         ....++|+.+|.++..+-
T Consensus       216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            67899999999864         224689999999987653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.56  E-value=2.7  Score=29.76  Aligned_cols=65  Identities=15%  Similarity=0.307  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~---~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.+++++......+.   .+.+..++..++    ..++.....+.+.|+..+.+.|+|+.|+.|....++..
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            556667776655443   455556666554    12444566788889999999999999999999988774

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.38  E-value=1.8  Score=36.98  Aligned_cols=61  Identities=23%  Similarity=0.297  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      .+..-.+.-|...+.+|+|.++..+-.=..+++|+       +.++.-+|.+....++|++|-+++..
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            34445556677788899999998876666665543       67899999999999999999999987

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.31  E-value=0.41  Score=38.02  Aligned_cols=62  Identities=16%  Similarity=0.163  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948          136 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  209 (230)
Q Consensus       136 A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  209 (230)
                      |..+|.+|..+.+.      .+..++.+|.++...|+.-+|+-+|-+++-..      ...+.+..|+...+.+
T Consensus         1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~------~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR------IPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS------B--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Confidence            67899999999888      67789999999999999999999999998553      3346788888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.18  E-value=1  Score=39.94  Aligned_cols=100  Identities=10%  Similarity=0.048  Sum_probs=75.5

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948          126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  205 (230)
Q Consensus       126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~  205 (230)
                      +-...|+..+-+..|.+|++-.+-....-........+|..|...|+.+.|...|++|.+..  .+.-...+.+|++.|.
T Consensus       356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y~~v~dLa~vw~~wae  433 (835)
T KOG2047|consen  356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP--YKTVEDLAEVWCAWAE  433 (835)
T ss_pred             hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--ccchHHHHHHHHHHHH
Confidence            33456888899999998887332111222245667889999999999999999999998764  1222345789999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhh
Q 026948          206 CYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       206 ~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .-....+++.|....++|....
T Consensus       434 mElrh~~~~~Al~lm~~A~~vP  455 (835)
T KOG2047|consen  434 MELRHENFEAALKLMRRATHVP  455 (835)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCC
Confidence            9999999999999999887543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.16  E-value=5.5  Score=32.63  Aligned_cols=104  Identities=19%  Similarity=0.097  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHh---------------------------cCChHHHHHHHHHHHHHHHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQN---------------------------VKDPIEEKKAARGLGASLQR  169 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~---------------------------~~~~~~~~~~~~~lg~~~~~  169 (230)
                      ...+..+......|+..+|+......+. ....                           .......+.++..+|.....
T Consensus       185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~  264 (352)
T PF02259_consen  185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE  264 (352)
T ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence            3566678888899999999998887777 2211                           11234456778888888878


Q ss_pred             c------CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHh
Q 026948          170 Q------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL-----------------ERAARFYDKYISR  226 (230)
Q Consensus       170 ~------~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-----------------~~A~~~~~~al~~  226 (230)
                      .      ++.++++..|++++.+.      +....+|+.+|..+...=+.                 ..|+.+|-+++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~a~~~~------~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~  338 (352)
T PF02259_consen  265 LYSKLSSESSDEILKYYKEATKLD------PSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSL  338 (352)
T ss_pred             hccccccccHHHHHHHHHHHHHhC------hhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhh
Confidence            7      99999999999999986      66677888888887654222                 2466777766655


Q ss_pred             h
Q 026948          227 L  227 (230)
Q Consensus       227 ~  227 (230)
                      -
T Consensus       339 ~  339 (352)
T PF02259_consen  339 G  339 (352)
T ss_pred             C
Confidence            4

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=92.16  E-value=2.8  Score=29.11  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=36.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc---------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS---------GSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .+|....+.+++-.|+-+|++|+.+.++.....         -...+..|||..++.+|+.+=.++|++-|-+
T Consensus         6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE   78 (140)
T PF10952_consen    6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE   78 (140)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence            445555555555555555555555554431000         1223466777778888887777777766544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.04  E-value=1.5  Score=30.95  Aligned_cols=68  Identities=18%  Similarity=0.166  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          156 EKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~---~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ...+.++++.+....   .+-++.+..++..++    ...+...-++.+.|+..+.++|+|++|+.|.+..++.-
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            445677888777655   456678888888765    12234456788899999999999999999999887753

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=92.03  E-value=7  Score=38.15  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+..+..+|...+.+++|.++++..++-+..      ....+...|..++++.+-+.|...+.+|+....+    .....
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~ 1601 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVE 1601 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHH
Confidence            5667888999999999999999988874443      5566777888888998889999999999888632    23566


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .....+....+.|+.+.+...|+--+..++
T Consensus      1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence            777788899999999999999988776553

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.00  E-value=3.7  Score=33.44  Aligned_cols=109  Identities=13%  Similarity=0.027  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ--NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      .-+.....+|.+|-..++|..|...+.. +....  ...+.......+..+|..|.+.++..+|..+-.++--......+
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N  179 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN  179 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence            3445677999999999999998775532 21111  11122334556888999999999999999998887433222222


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      +......-.--|++.-..++|=+|...|.+..
T Consensus       180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222223555666777766666665544

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=92.00  E-value=2.8  Score=29.10  Aligned_cols=67  Identities=13%  Similarity=0.227  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC--Ch-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--DP-------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--~~-------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      +..+|...++.+++-.++-+|++|+.+..+..  ..       ........||+..++.+|+.+-.++|++-|-+.
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~   79 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK   79 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence            34578888999999999999999999888752  11       112445899999999999999999999877543

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=91.92  E-value=6.2  Score=32.45  Aligned_cols=98  Identities=12%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHH-
Q 026948          127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA-  204 (230)
Q Consensus       127 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-~~~~~~~lg-  204 (230)
                      ..+.++.++|+.+.++...-.+....+.........+|.++...||.+++.+.+...-....+..+-+. ....++.++ 
T Consensus        85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss  164 (380)
T KOG2908|consen   85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS  164 (380)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence            344569999999999999888776666667778888999999999999999999887766555555444 444455564 


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 026948          205 DCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       205 ~~y~~~g~~~~A~~~~~~al  224 (230)
                      ..|...|++...-...-+.+
T Consensus       165 qYyk~~~d~a~yYr~~L~YL  184 (380)
T KOG2908|consen  165 QYYKKIGDFASYYRHALLYL  184 (380)
T ss_pred             HHHHHHHhHHHHHHHHHHHh
Confidence            44567888876544444433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.81  E-value=0.4  Score=36.23  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI  177 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai  177 (230)
                      .+...+.+|..|. ..|.++|+..+.+++++.+.  +....+..+..|+.++..+|+++.|-
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4446667777766 67999999999999998876  43446788999999999999999885

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.81  E-value=9.5  Score=34.35  Aligned_cols=135  Identities=8%  Similarity=0.005  Sum_probs=89.1

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      ..+.+-..+.+++.....          .+-.+....+..-++.++.+.+... |....++.++.++..+.........+
T Consensus        75 n~~~Ae~~L~k~~~l~~~----------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl  143 (608)
T PF10345_consen   75 NLDLAETYLEKAILLCER----------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL  143 (608)
T ss_pred             CHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence            344444455566555543          1222234445556788888887777 99999999998887554443332222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      -........+|+..|++.++.........++..-...+....+.+....+..+++++..+++....
T Consensus       144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~  209 (608)
T PF10345_consen  144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA  209 (608)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence            213333334899999999999999887666655555556666777888888888988888886544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.65  E-value=0.92  Score=24.04  Aligned_cols=20  Identities=40%  Similarity=0.718  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHH
Q 026948          160 ARGLGASLQRQGKYREAIKY  179 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~  179 (230)
                      .+.+|..+..+|+|++|++.
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            34445555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.49  E-value=1.5  Score=39.85  Aligned_cols=100  Identities=30%  Similarity=0.429  Sum_probs=57.6

Q ss_pred             HHHHHHhCCCHHHHHHHHHH------HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------
Q 026948          123 TGKNFLRNQDLEKAFTEFKA------ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV-------------  183 (230)
Q Consensus       123 ~g~~~~~~g~~~~A~~~~~~------al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a-------------  183 (230)
                      -|.+|.+..++++|+++|++      ++++++- .-+......-..-|.-.-..|+++-|+.+|-.+             
T Consensus       667 agdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a  745 (1636)
T KOG3616|consen  667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA  745 (1636)
T ss_pred             hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence            34455556678888887654      4444432 122222223333455666777788777776543             


Q ss_pred             ------HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          184 ------LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  223 (230)
Q Consensus       184 ------l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  223 (230)
                            +.+.....|..-....|-.++.-|...|+|+-|.+.|.++
T Consensus       746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~  791 (1636)
T KOG3616|consen  746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA  791 (1636)
T ss_pred             hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence                  2232223333323334556788899999999998887654

>PRK10941 hypothetical protein; Provisional

Probab=91.43  E-value=3.6  Score=32.89  Aligned_cols=63  Identities=13%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .+.++=.+|...++++.|+.+.+..+.+.+.      .+.-....|.+|.+.|.+..|...++..++..
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            4447788899999999999999999997766      44556678999999999999999999988776

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=91.30  E-value=3.9  Score=32.75  Aligned_cols=95  Identities=18%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 026948          118 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       118 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~  189 (230)
                      .....+|..|..    ..+..+|.++|..+..        .....+.+++|..|..    ..|+.+|..+|+++.+..  
T Consensus        74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g--  143 (292)
T COG0790          74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG--  143 (292)
T ss_pred             HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC--
Confidence            356677777764    3578899999985555        2255678889999887    569999999999997653  


Q ss_pred             hCCcccHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHH
Q 026948          190 EGEYSGSTEAYGAIADCYTELG-------DLERAARFYDKYIS  225 (230)
Q Consensus       190 ~~~~~~~~~~~~~lg~~y~~~g-------~~~~A~~~~~~al~  225 (230)
                        . +.-..+.+.+|..|..-+       +..+|..+|.++..
T Consensus       144 --~-~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~  183 (292)
T COG0790         144 --N-VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE  183 (292)
T ss_pred             --C-hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence              1 110344888888887642       23478888888754

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.23  E-value=0.52  Score=26.28  Aligned_cols=25  Identities=36%  Similarity=0.579  Sum_probs=19.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          201 GAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       201 ~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ++++.+|..+|+++.|.+..++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4677888888888888888777764

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=90.67  E-value=2.8  Score=36.69  Aligned_cols=84  Identities=14%  Similarity=0.106  Sum_probs=52.5

Q ss_pred             HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          119 SRLKTGKNFL--RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       119 ~~~~~g~~~~--~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ++-++|.+--  ....-+.++..|.+|+..++..-+.. +..-|..+|-.+++.++|.+|+.++-.|-+...+.+....+
T Consensus       279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reD  357 (618)
T PF05053_consen  279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSRED  357 (618)
T ss_dssp             HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGG
T ss_pred             hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccH
Confidence            4444454432  22334567888999999888754433 44456777888999999999999999998887766555555


Q ss_pred             HHHHHHH
Q 026948          197 TEAYGAI  203 (230)
Q Consensus       197 ~~~~~~l  203 (230)
                      .+.|-.+
T Consensus       358 eEiYKEf  364 (618)
T PF05053_consen  358 EEIYKEF  364 (618)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.52  E-value=9.7  Score=32.14  Aligned_cols=96  Identities=26%  Similarity=0.255  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..++.-++.-.-.|+++.|..-|+..+.      ++......+.+|-.--.+.|+++-|+.|-+++-...      |...
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A------p~l~  188 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA------PQLP  188 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc------cCCc
Confidence            3455567777788999999999988776      655555556666566678999999999999998776      6667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .+....-......|+++.|++..+....
T Consensus       189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         189 WAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            7777777778899999999998876654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=90.46  E-value=3.5  Score=26.92  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHH
Q 026948          138 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  217 (230)
Q Consensus       138 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  217 (230)
                      ..+++.+..      .+....+.+.++..+...|++++|++.+...++..+..+    ...+...+=.++..+|.-+.-.
T Consensus         9 ~al~~~~a~------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~----~~~ar~~ll~~f~~lg~~~plv   78 (90)
T PF14561_consen    9 AALEAALAA------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE----DDAARKRLLDIFELLGPGDPLV   78 (90)
T ss_dssp             HHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC----CCHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc----ccHHHHHHHHHHHHcCCCChHH
Confidence            345555553      233668889999999999999999999988876653322    2345555666677777755444


Q ss_pred             HHHHHHH
Q 026948          218 RFYDKYI  224 (230)
Q Consensus       218 ~~~~~al  224 (230)
                      .-|++-+
T Consensus        79 ~~~RRkL   85 (90)
T PF14561_consen   79 SEYRRKL   85 (90)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4454443

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.37  E-value=1  Score=27.68  Aligned_cols=28  Identities=14%  Similarity=0.232  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      .+...|.-.=..|+|++|+++|.+++..
T Consensus         7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    7 ELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3444455555556666666666665443

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.36  E-value=0.91  Score=28.57  Aligned_cols=26  Identities=15%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948          164 GASLQRQGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       164 g~~~~~~~~~~~Ai~~~~~al~~~~~  189 (230)
                      |.--=..|+|++|+++|..+++....
T Consensus        13 A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680          13 AFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            33444889999999999999988755

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.33  E-value=7.5  Score=32.81  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHhCCcc
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS----EREGEYS  194 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~----~~~~~~~  194 (230)
                      ++..+|.-|...|+++.|+..|-++...+-.   .......+.++-.+....|+|..-..+-.+|....    .....  
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~--  226 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE--  226 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh--
Confidence            6778999999999999999999997765543   22345567777778888899988888888776552    11111  


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKY  223 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  223 (230)
                      ..+...+.-|.+...+++|+.|..++-.+
T Consensus       227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  227 VPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            22335556666777788999999887543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.19  E-value=2.8  Score=33.74  Aligned_cols=61  Identities=25%  Similarity=0.361  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ...+..|...|.+.+|+.+.++++.+.      |.....+..+-.++..+||--.|+..|++.-+..
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltld------pL~e~~nk~lm~~la~~gD~is~~khyerya~vl  343 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLD------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVL  343 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence            334566889999999999999999986      7778889999999999999999999998876543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=89.96  E-value=2.4  Score=35.65  Aligned_cols=75  Identities=16%  Similarity=0.092  Sum_probs=56.1

Q ss_pred             ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948          112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  188 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~  188 (230)
                      +...++...+.+-..|...+-|++|...-.++.  ++........++..+.+|.+..-+++|..|.++|.+|+....
T Consensus       204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap  278 (493)
T KOG2581|consen  204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP  278 (493)
T ss_pred             cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence            455566556667778888888888877665543  122223335788899999999999999999999999987763

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.85  E-value=1.1  Score=28.11  Aligned_cols=28  Identities=11%  Similarity=0.151  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      .+...+.-+=..|++.+|+.+|+++++.
T Consensus         8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           8 KYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3444454555566666666666666554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=89.84  E-value=8.9  Score=30.99  Aligned_cols=80  Identities=9%  Similarity=0.066  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948          131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  210 (230)
                      ...++-++.+.+.++-....+.......+..++|..|++.+|-+.+.+++.+.+.-.-..+-.-+..-+-..+|.+|..+
T Consensus        89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~  168 (412)
T COG5187          89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR  168 (412)
T ss_pred             HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence            45566677777777766665667778899999999999999999999999998876665555545555566666666443

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.64  E-value=0.9  Score=28.91  Aligned_cols=26  Identities=35%  Similarity=0.314  Sum_probs=14.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          202 AIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       202 ~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +.|..+.+.|+.++|+.+|++++...
T Consensus        13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l   38 (79)
T cd02679          13 SKALRADEWGDKEQALAHYRKGLREL   38 (79)
T ss_pred             HHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence            34444445556666666666665544

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=89.58  E-value=0.17  Score=41.39  Aligned_cols=103  Identities=16%  Similarity=0.093  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC--------C-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--------D-----PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--------~-----~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      .-..|...+..++++.|..-|.+++.......        +     .........+++.+-...+.+..|+.....++..
T Consensus       225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~  304 (372)
T KOG0546|consen  225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD  304 (372)
T ss_pred             hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence            33577788999999999999999888665211        1     1112234667888888899999999888777662


Q ss_pred             HHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       187 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                            .+....+++..+..+..+.++++|+++++.+....+
T Consensus       305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p  340 (372)
T KOG0546|consen  305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP  340 (372)
T ss_pred             ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence                  366678999999999999999999999999866543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.08  E-value=3.8  Score=35.63  Aligned_cols=76  Identities=21%  Similarity=0.077  Sum_probs=62.6

Q ss_pred             ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 026948          112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL-AQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQIS  187 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~Ai~~~~~al~~~  187 (230)
                      +........+-+|.++...|+-..|..+|.-.++- .....+....+.+++.+|..+..++. ..++.+++.+|-+..
T Consensus       444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            44555666778999999999999999999877643 33455777789999999999999999 999999999986654

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.89  E-value=1.4  Score=27.75  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      +..+...+.-.=..|+|++|+.+|..+++.
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            334455555566678888888888887665

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.55  E-value=7.4  Score=28.06  Aligned_cols=84  Identities=24%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+......-...++.+++.......--+.++      ....-.--|.++...|++.+|+..++...+-      .+..+.
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~   79 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSS------AGAPPY   79 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchH
Confidence            4444455555578888888777655555555      4455566788899999999999999986432      234455


Q ss_pred             HHHHHHHHHHHcCCHH
Q 026948          199 AYGAIADCYTELGDLE  214 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~  214 (230)
                      +.-.++.|...+||.+
T Consensus        80 ~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        80 GKALLALCLNAKGDAE   95 (153)
T ss_pred             HHHHHHHHHHhcCChH
Confidence            6666788888888753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=88.47  E-value=11  Score=33.88  Aligned_cols=106  Identities=19%  Similarity=0.214  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hCC
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER------EGE  192 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~------~~~  192 (230)
                      .+...|..|...|+.+.|...++++.+.  ..+.-...+..+.+-|..-.+..+++.|++..++|..+...      .+.
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V--~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~  466 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKV--PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS  466 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcC--CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence            4557899999999999999999999984  23344446778888888999999999999999999865433      111


Q ss_pred             ccc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          193 YSG------STEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       193 ~~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .|-      ....|...++..+..|=++.-...|++.+++
T Consensus       467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL  506 (835)
T KOG2047|consen  467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL  506 (835)
T ss_pred             CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            121      2235666777788888888888888888763

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.98  E-value=2.7  Score=22.25  Aligned_cols=28  Identities=18%  Similarity=0.229  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHh
Q 026948          199 AYGAIADCYTELGDLERAARF--YDKYISR  226 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~--~~~al~~  226 (230)
                      .++.+|-.+...|++++|++.  |.-+..+
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l   32 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCAL   32 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            345556666666666666666  5544433

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=87.85  E-value=14  Score=30.51  Aligned_cols=76  Identities=16%  Similarity=0.149  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ....-...|+...|..+|...+..|...++..--++. .+..=..-|..+..-+||..|..||-.|++-....+++.
T Consensus       170 v~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v  246 (411)
T KOG1463|consen  170 VHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV  246 (411)
T ss_pred             ehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence            4455567788888999999988888887776544443 333333447888888999999999999987665555543

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.33  E-value=1.9  Score=27.25  Aligned_cols=27  Identities=15%  Similarity=0.313  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      +...|.-.=..|+|++|+.+|.++++.
T Consensus         9 l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           9 VLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344444455566666666666666555

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=87.23  E-value=14  Score=29.85  Aligned_cols=65  Identities=14%  Similarity=0.111  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      -..+...+++.|.|.+|+....-.+.-.++..|.+....+|..-..+|.+..+..++.....-|-
T Consensus       128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaAr  192 (421)
T COG5159         128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAAR  192 (421)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHH
Confidence            45567788899999999999999988888888888888888888999999988888877766553

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=87.09  E-value=1.2  Score=35.26  Aligned_cols=59  Identities=15%  Similarity=0.041  Sum_probs=47.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948          130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  188 (230)
Q Consensus       130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~  188 (230)
                      .-....|.+...+|+-.++..+|......+.+..|..|+..++|+-|..||.+|.++..
T Consensus        52 ~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~  110 (368)
T COG5091          52 DATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV  110 (368)
T ss_pred             ccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            34677888888888888888888887887888888888888888888888888888764

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=86.38  E-value=11  Score=28.43  Aligned_cols=105  Identities=21%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  201 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  201 (230)
                      ..+......|++++|...++++.+...+.+.......-.+.-|.+-..+..|.+|...|.-.-.-...+.+.-+.+...+
T Consensus        34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Y  113 (204)
T COG2178          34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAY  113 (204)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHH
Confidence            34555667789999999999988877765544434445566677777788899998776542211100111011111222


Q ss_pred             H--HHH----------HHHHcCCHHHHHHHHHHHHHh
Q 026948          202 A--IAD----------CYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       202 ~--lg~----------~y~~~g~~~~A~~~~~~al~~  226 (230)
                      -  +|+          .....|++++|...++=.-++
T Consensus       114 ilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l  150 (204)
T COG2178         114 ILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL  150 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            2  222          234578889998887654443

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=86.19  E-value=2.9  Score=33.17  Aligned_cols=58  Identities=16%  Similarity=0.092  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          172 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       172 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ....|.+...+|+-..+..+|...+..+-...+..|....+|+.|..||.+|.+.+..
T Consensus        54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~  111 (368)
T COG5091          54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD  111 (368)
T ss_pred             ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence            5667889999999999999999988888889999999999999999999999987754

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.04  E-value=14  Score=31.22  Aligned_cols=93  Identities=11%  Similarity=0.056  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948          131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  210 (230)
                      .++..-.+-++.-++-++....+....+++..+|.-|...|+.+.|++.|-++-+...+   .....+.+.|+-.+-..+
T Consensus       124 ~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~  200 (466)
T KOG0686|consen  124 KKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYM  200 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhh
Confidence            33444444555555555555556667889999999999999999999999997666532   124567788888888899


Q ss_pred             CCHHHHHHHHHHHHHh
Q 026948          211 GDLERAARFYDKYISR  226 (230)
Q Consensus       211 g~~~~A~~~~~~al~~  226 (230)
                      |+|..-..+-.+|...
T Consensus       201 ~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  201 GNWGHVLSYISKAEST  216 (466)
T ss_pred             cchhhhhhHHHHHHhC
Confidence            9998888877777654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=86.01  E-value=3.5  Score=26.88  Aligned_cols=45  Identities=24%  Similarity=0.227  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          176 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       176 Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .+..+++.++-.      |....+.+.+|..+...|++++|++.+-..+..
T Consensus         7 ~~~al~~~~a~~------P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~   51 (90)
T PF14561_consen    7 DIAALEAALAAN------PDDLDARYALADALLAAGDYEEALDQLLELVRR   51 (90)
T ss_dssp             HHHHHHHHHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHcC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            355566666654      778899999999999999999999988877754

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=85.96  E-value=1.8  Score=33.57  Aligned_cols=56  Identities=25%  Similarity=0.268  Sum_probs=49.3

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .....++.+.|.+.|.+++.+.+.      ....++.+|....+.|+.+.|...|++.+++.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld   59 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD   59 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence            345678999999999999997766      67778899999999999999999999999885

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=85.77  E-value=3.7  Score=25.13  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+..+...|...-..|++++|+++|.+++....
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            445666788888899999999999999988543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.56  E-value=2.1  Score=23.81  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=22.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQ  185 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~  185 (230)
                      .+++..|...|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5788999999999999999999874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=85.09  E-value=5  Score=31.92  Aligned_cols=72  Identities=15%  Similarity=0.164  Sum_probs=59.9

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +.....+...++=..+.+.++++.|..+-++.+.+.      |..+.-+..-|.+|.++|.+.-|++.++..++..++
T Consensus       176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~------P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~  247 (269)
T COG2912         176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLN------PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD  247 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhC------CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence            444466778888888999999999999999999886      666777888999999999999999999887765543

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=85.03  E-value=16  Score=32.32  Aligned_cols=87  Identities=9%  Similarity=0.001  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHH
Q 026948          140 FKAALELAQNVKDPIEEKKAARGLGASLQR--QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  217 (230)
Q Consensus       140 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~--~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  217 (230)
                      -++.+-+.-..+.-...+.++.+||.+---  ..+-..++..|.+|+...+..-+. ....-|..+|-.|.+.++|.+|+
T Consensus       260 qq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~  338 (618)
T PF05053_consen  260 QQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREAL  338 (618)
T ss_dssp             HHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHH
Confidence            344444444445555577888888877543  233456899999999988776553 24456888999999999999999


Q ss_pred             HHHHHHHHhh
Q 026948          218 RFYDKYISRL  227 (230)
Q Consensus       218 ~~~~~al~~~  227 (230)
                      .++-.|-+..
T Consensus       339 ~~Wa~aa~Vi  348 (618)
T PF05053_consen  339 RSWAEAADVI  348 (618)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887654

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.67  E-value=7.4  Score=29.00  Aligned_cols=84  Identities=12%  Similarity=0.026  Sum_probs=48.6

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHH
Q 026948          129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCY  207 (230)
Q Consensus       129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y  207 (230)
                      ..+..++|+..|...-+    .+.......+....|.+..+.|+-..|+.+|...-.-   ...+. ..-.+...-+..+
T Consensus        70 ~~~k~d~Alaaf~~lek----tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lL  142 (221)
T COG4649          70 QENKTDDALAAFTDLEK----TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLL  142 (221)
T ss_pred             HcCCchHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHH
Confidence            34555555554443222    2233334556778889999999999999999885332   22111 1122344445566


Q ss_pred             HHcCCHHHHHHH
Q 026948          208 TELGDLERAARF  219 (230)
Q Consensus       208 ~~~g~~~~A~~~  219 (230)
                      ...|.|++-..-
T Consensus       143 vD~gsy~dV~sr  154 (221)
T COG4649         143 VDNGSYDDVSSR  154 (221)
T ss_pred             hccccHHHHHHH
Confidence            677778765543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.97  E-value=32  Score=31.54  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------h-------CCcccHHHHHHHHHHHHHHcCCHHH
Q 026948          152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER---------E-------GEYSGSTEAYGAIADCYTELGDLER  215 (230)
Q Consensus       152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~---------~-------~~~~~~~~~~~~lg~~y~~~g~~~~  215 (230)
                      +......+..++|..+..+..+++|.++|.++-.....         .       ...|.....+-.+|+.+...|--++
T Consensus       791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q  870 (1189)
T KOG2041|consen  791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ  870 (1189)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence            44556778888888888888888888888765432211         0       0112333445556777777777777


Q ss_pred             HHHHHH
Q 026948          216 AARFYD  221 (230)
Q Consensus       216 A~~~~~  221 (230)
                      |.+.|-
T Consensus       871 AV~a~L  876 (1189)
T KOG2041|consen  871 AVEAYL  876 (1189)
T ss_pred             HHHHHH
Confidence            766653

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=83.40  E-value=9.1  Score=36.19  Aligned_cols=98  Identities=19%  Similarity=0.186  Sum_probs=65.0

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      .+++++..|++.-...|.            .. +--.+.+..|.....+.+-..--..+.+|+......-+.+..+--|-
T Consensus       490 ~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (932)
T PRK13184        490 LYDQALIFYRRIRESFPG------------RK-EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL  556 (932)
T ss_pred             HHHHHHHHHHHHhhcCCC------------cc-cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence            456677778887777765            11 11225666666655332211111456666666666556666677788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      +.+.+|.+.|+|++-++++.-|++...+.+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            8899999999999999999999988754443

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=83.29  E-value=28  Score=29.75  Aligned_cols=108  Identities=16%  Similarity=0.004  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHh-
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-------REAIKYHSMVLQISERE-  190 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~-------~~Ai~~~~~al~~~~~~-  190 (230)
                      ....+|..++..|+|+.|...|+-..+-+..-+--...+-++.-.|.+..-.+..       ++...+++.|+....+. 
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            3457899999999999999999988886654222222344455556666655533       36777888887777662 


Q ss_pred             ----CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          191 ----GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       191 ----~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                          .....-..+....+.++...|.+.+|...+-+....
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence                112244556777788889999998888877666543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.15  E-value=9.1  Score=24.06  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      .+..+...|.-+-..|++.+|+.+|++++++.-.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4456678899999999999999999999986543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF12854 PPR_1: PPR repeat

Probab=83.05  E-value=3.9  Score=21.11  Aligned_cols=27  Identities=22%  Similarity=0.553  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDK  222 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~  222 (230)
                      +..+|..+-..|.+.|+.++|.+.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            456677777788888888888877764

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=82.80  E-value=3.7  Score=25.68  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +..+...|.-.-..|++++|+.+|.++++..
T Consensus         8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l   38 (77)
T smart00745        8 AKELISKALKADEAGDYEEALELYKKAIEYL   38 (77)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3444555655666777777777777776653

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.78  E-value=8.1  Score=32.80  Aligned_cols=72  Identities=18%  Similarity=0.163  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      +...+.+++.-.|||..|+...+. +++.+.   .....-....++.+|.+|+-+++|.+|++.|...+-...+..
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455677788899999999886542 111111   012333455699999999999999999999999986654433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.15  E-value=2.1  Score=37.79  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948          126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  205 (230)
Q Consensus       126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~  205 (230)
                      .++.+|+..+|+.++..++-..+.+    ..--++..+|.++.+.|...+|--.+..|+.-.      +....-++.+|.
T Consensus       222 YWR~~G~~~~A~~Ca~~a~hf~~~h----~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA------~~~t~n~y~l~~  291 (886)
T KOG4507|consen  222 YWRIKGEPYQAVECAMRALHFSSRH----NKDIALLSLATVLHRAGFSADAAVILHAALDDA------DFFTSNYYTLGN  291 (886)
T ss_pred             HHHHcCChhhhhHHHHHHhhhCCcc----cccchhhhHHHHHHHcccccchhheeehhccCC------ccccccceeHHH
Confidence            3456899999999999998876552    223457789999999999999887776664432      444555888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 026948          206 CYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       206 ~y~~~g~~~~A~~~~~~al~  225 (230)
                      ++..+|+|.....+|..+.+
T Consensus       292 i~aml~~~N~S~~~ydha~k  311 (886)
T KOG4507|consen  292 IYAMLGEYNHSVLCYDHALQ  311 (886)
T ss_pred             HHHHHhhhhhhhhhhhhhhc
Confidence            99999999888888887765

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.09  E-value=5.5  Score=25.14  Aligned_cols=33  Identities=12%  Similarity=0.218  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+..+...|...-..|+|++|+.+|.++++..-
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~   37 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM   37 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            444566778888889999999999999998654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=81.85  E-value=5.8  Score=29.77  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.++.+++.++...|+.++|....+++..+++
T Consensus       143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  143 DPNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            355566666666666666666666666655554

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=81.60  E-value=28  Score=28.67  Aligned_cols=76  Identities=13%  Similarity=0.045  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948          134 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  209 (230)
Q Consensus       134 ~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  209 (230)
                      ++-++-+++.++-+.+.........+..+.+..|++.||-+.|.+.+.+...-.-..+-.-+..-+...+|..|..
T Consensus        81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D  156 (393)
T KOG0687|consen   81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD  156 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc
Confidence            3445556666665555445666888999999999999999999999999877665555555666667777777653

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.56  E-value=11  Score=23.79  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      .+..+...|...-..|+|++|+.+|.+++++.-.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            4456667888899999999999999999986543

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=81.54  E-value=11  Score=30.40  Aligned_cols=106  Identities=7%  Similarity=-0.052  Sum_probs=78.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc-HHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAY  200 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-~~~~~  200 (230)
                      .+...+++.|.|.+|+......+...++..|.......+..-..+|...++..++..-+..|-......-.+|. .+..-
T Consensus       130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD  209 (421)
T COG5159         130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD  209 (421)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence            56788999999999999999999888888888877777777777888888888887777766555433333332 22222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          201 GAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       201 ~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..-|.....-.+|.-|-.||-.+++-+
T Consensus       210 L~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         210 LLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             HhccceeeccccchhHHHHHHHHHhcc
Confidence            333677778889999999998887644

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=81.15  E-value=35  Score=29.49  Aligned_cols=59  Identities=27%  Similarity=0.394  Sum_probs=47.2

Q ss_pred             HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          157 KKAARGLGA--SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  222 (230)
Q Consensus       157 ~~~~~~lg~--~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  222 (230)
                      ....+.++.  ..+.+|+|.++.-+..=..++.      | .+.+|..+|.|.....+|++|.+++.+
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~ia------P-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA------P-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC------C-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            334444544  4678999999999887777775      5 678999999999999999999998864

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=81.03  E-value=12  Score=32.86  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC---CCHHHHHHHHH
Q 026948           65 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---QDLEKAFTEFK  141 (230)
Q Consensus        65 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~A~~~~~  141 (230)
                      ..++....+.+.......-..++..|.+++...+.                ....+.+.+..++..   |+--.|+....
T Consensus       372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----------------~~~~l~nraa~lmkRkW~~d~~~AlrDch  435 (758)
T KOG1310|consen  372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD----------------AIYLLENRAAALMKRKWRGDSYLALRDCH  435 (758)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc----------------hhHHHHhHHHHHHhhhccccHHHHHHhHH
Confidence            44455555555555555667778888888888776                333444556666543   45666777777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          142 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  185 (230)
Q Consensus       142 ~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~  185 (230)
                      .++++      .+....+.+.|+.+....+++.+|+++...+..
T Consensus       436 ~Alrl------n~s~~kah~~la~aL~el~r~~eal~~~~alq~  473 (758)
T KOG1310|consen  436 VALRL------NPSIQKAHFRLARALNELTRYLEALSCHWALQM  473 (758)
T ss_pred             hhccC------ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence            78774      344778899999999999999999998766543

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.86  E-value=12  Score=23.82  Aligned_cols=32  Identities=13%  Similarity=-0.056  Sum_probs=19.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      .+.|..+-..|+.++|+.+|++++....+.-.
T Consensus        12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a   43 (79)
T cd02679          12 ISKALRADEWGDKEQALAHYRKGLRELEEGIA   43 (79)
T ss_pred             HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            33344444557777777777777776655433

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=80.71  E-value=31  Score=28.60  Aligned_cols=94  Identities=14%  Similarity=0.074  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948          131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  210 (230)
                      +.++.-+......++-+.+-+-.-.....-..+...|.+.++|.+|+......+.-.++..|.....+++..-..+|..+
T Consensus       102 ~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l  181 (411)
T KOG1463|consen  102 DGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHAL  181 (411)
T ss_pred             CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHH
Confidence            44555566666666655542222222333456778899999999999999999999999999888888888889999999


Q ss_pred             CCHHHHHHHHHHHH
Q 026948          211 GDLERAARFYDKYI  224 (230)
Q Consensus       211 g~~~~A~~~~~~al  224 (230)
                      .+..+|.....-|-
T Consensus       182 ~Nl~KakasLTsAR  195 (411)
T KOG1463|consen  182 RNLPKAKASLTSAR  195 (411)
T ss_pred             hcchhHHHHHHHHH
Confidence            99999988776553

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=80.59  E-value=2.1  Score=32.05  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=61.7

Q ss_pred             CCHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Q 026948          131 QDLEKAFT-EFKAALELAQNVKDPIEEKKAARGLGASLQ-----RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA  204 (230)
Q Consensus       131 g~~~~A~~-~~~~al~l~~~~~~~~~~~~~~~~lg~~~~-----~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg  204 (230)
                      |+|-+++. .|++|.++++..-+....+.+.+.+|..+.     ..++...|+++|+.+-+.        ..+.+..++|
T Consensus        41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--------n~~~aC~~~g  112 (248)
T KOG4014|consen   41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--------NIPQACRYLG  112 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--------CCHHHHhhhh
Confidence            45555554 467777777765565567778888887665     356899999999998543        3567777888


Q ss_pred             HHHHHc-----CC--HHHHHHHHHHHHHh
Q 026948          205 DCYTEL-----GD--LERAARFYDKYISR  226 (230)
Q Consensus       205 ~~y~~~-----g~--~~~A~~~~~~al~~  226 (230)
                      .+.+.-     ++  .++|.+++.++.+.
T Consensus       113 Ll~~~g~~~r~~dpd~~Ka~~y~traCdl  141 (248)
T KOG4014|consen  113 LLHWNGEKDRKADPDSEKAERYMTRACDL  141 (248)
T ss_pred             hhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence            877642     23  67899999988654

>PF12854 PPR_1: PPR repeat

Probab=80.49  E-value=4.8  Score=20.74  Aligned_cols=26  Identities=15%  Similarity=0.110  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      ...|.-+-..+++.|+.++|++.|++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            34566677788888888888888764

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.44  E-value=29  Score=27.97  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=59.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948          130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  209 (230)
Q Consensus       130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  209 (230)
                      ..+.++|+..|++.+++-..  ....--.++-.+-.+++++++|++-++.|.+.+...+..--......+.+++-+.-..
T Consensus        40 e~~p~~Al~sF~kVlelEgE--KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt  117 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGE--KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST  117 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccc--cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence            45899999999999997654  3334556788888999999999999999999887665421111122233333333233


Q ss_pred             cCCHHHHHHHHHHHHH
Q 026948          210 LGDLERAARFYDKYIS  225 (230)
Q Consensus       210 ~g~~~~A~~~~~~al~  225 (230)
                      ..+.+--.+.|+-.++
T Consensus       118 S~~m~LLQ~FYeTTL~  133 (440)
T KOG1464|consen  118 SKNMDLLQEFYETTLD  133 (440)
T ss_pred             hhhhHHHHHHHHHHHH
Confidence            3444444455554443

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.12  E-value=6.1  Score=24.59  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      +...|.-.-..|+|++|+.+|..+++.
T Consensus         9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~   35 (75)
T cd02656           9 LIKQAVKEDEDGNYEEALELYKEALDY   35 (75)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334444455666666666666666544

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-04
3sf4_A	406	Crystal Structure Of The Complex Between The Conser		1e-04
3ro3_A	164	Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length		3e-04
4g2v_A	340	Structure Complex Of Lgn Binding With Frmpd1 Length		4e-04
3ro2_A	338	Structures Of The LgnNUMA COMPLEX Length = 338		4e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 110 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 169
           +DP+  E    L  G  + +  D ++A   ++ ALEL     DP    +A   LG +  +
Sbjct: 30  LDPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYK 81
Query: 170 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           QG Y EAI+Y+   L++  R      S EA+  + + Y + GD + A  +Y K
Sbjct: 82  QGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQK 128

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  + +  D ++A   ++ ALEL  N        +A   LG +  +QG Y EAI+Y+   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           L++      Y  + EA+  + + Y + GD + A  +Y K
Sbjct: 70  LEL------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  + +  D ++A   ++ ALEL     DP    +A   LG +  +QG Y EAI+Y+   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 70  LELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQK 102

>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334

>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length = 164

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%)
Query: 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 172
           K  E ++    G  ++   + E A   +K  L LA+ +KD   E ++   LG +      
Sbjct: 45  KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 104
Query: 173 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           Y +AI YH   L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156

>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 232 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 291
Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 292 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 332

>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-13
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	9e-13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	7e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	4e-04

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 64  EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 19/91 (20%), Positives = 42/91 (46%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           +   A    +  L +A+   D   E+ A   LG +    G++  A +Y+   L ++ +  
Sbjct: 24  NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 84  DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 55.6 bits (135), Expect = 5e-10
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           LG +    G +R+A+  H   L I++  G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           D EKA       L +AQ +KD I E +A   LG +    G + +A+ +    L+IS   G
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 24/99 (24%), Positives = 43/99 (43%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
             NFL  +  E A + F+ A  +A+  K P    +    +G     Q +Y +AI Y    
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           + + E         +AY  I   + +LG +++A  ++ K
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G   L  ++   A   FK A      VKD IE+ +    +  S     +   ++ Y    
Sbjct: 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169

Query: 184 LQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDK 222
            +I +    Y+    + +   A  + +L   E A   + K
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQK 209

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYHSMVLQISE 188
               +    + A E+ +  +      +  +       +     +Y +AI +      ++E
Sbjct: 158 QTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215

Query: 189 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            E +          I  C       E A  ++ + I+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 35/136 (25%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G         E A   FK A+ + +         +A   +     + GK  +A +YHS  
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290

Query: 184 LQIS-----------------------------------EREGEYSGSTEAYGAIADCYT 208
           +  S                                   E +  Y+   +    +A  Y 
Sbjct: 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350

Query: 209 ELGDLERAARFYDKYI 224
           E  + ++A+ ++ K  
Sbjct: 351 ERKNFQKASAYFLKVE 366

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 10/91 (10%), Positives = 28/91 (30%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           + +   ++    ++  Q     + E       G     Q +Y  AIK+            
Sbjct: 78  EEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK 137

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +     E +  +++ Y  +     +  +  +
Sbjct: 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           D + A    +  L +A+   D   E++A   LG S    G++ +A +++   L ++   G
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           E     ++  ++ + YT L +   A  ++++
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 22/93 (23%), Positives = 45/93 (48%)

Query: 130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 189
            + L +A   ++  L+L +++ D   + +A   LG +    G ++ AI++H   L+I+  
Sbjct: 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255

Query: 190 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            G+ +    A   + + +  LG  E AA  Y +
Sbjct: 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           D       F+AA++     +D          LG +    G Y +A++YH   L +++   
Sbjct: 63  DCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +  G  ++ G + +    +G  + AA   ++
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 22/93 (23%), Positives = 47/93 (50%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
             E A   +K  L LA  + +   E ++   LG +     ++  AI+YH+  L I++  G
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           +  G   A  ++ + ++ +G  ERA ++ ++++
Sbjct: 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 22/98 (22%), Positives = 39/98 (39%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           D  KA    K  L LA+++ D + E K++  LG +L+  G++ EA       L ++ + G
Sbjct: 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229
           +      A   + + Y   G                E+
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 2/105 (1%)

Query: 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 177
           LS      + L                +                  G  L   G  R  +
Sbjct: 9   LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68

Query: 178 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            +    +Q      +    +  Y  + + Y  LGD  +A +++  
Sbjct: 69  AFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------- 173
           N L+     ++A    +  L LA+ + D + E +A   LG     +GK+           
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193

Query: 174 ------REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
                   A++++   L++    G+      A G + + Y  LGD + A   + +
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 11/72 (15%), Positives = 14/72 (19%)

Query: 159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 218
           +A     S    G        H    Q        S          +     GD      
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 219 FYDKYISRLESD 230
           F+   I     D
Sbjct: 70  FFQAAIQAGTED 81

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187
            +   A       L +AQ + D I E +A   LG +    G +  A+KY    LQ++
Sbjct: 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           QD EKA       L +AQ + D I E +A   LG +    G + +A+ +    L+IS   
Sbjct: 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228
           G+ SG   A   ++D    LG             + ++
Sbjct: 341 GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
             L+ A   ++  L L   + D   + +A   LG +    G +R+A+  H   L I++  
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           +   A    +  L +A+   D   E++A   LG +    G++  A +Y+   L ++ +  
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G+   ++ D     + F+AA+++    +D          LG +      Y +A++YH   
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           L ++   G+  G  +A G + +    LG+ + A     +
Sbjct: 74  LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 26/98 (26%), Positives = 36/98 (36%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           D  KA       L LA+ + D + E KA+  LG +L+  G + EAI      L IS    
Sbjct: 62  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229
           +  G   A   + + Y   G         D      E 
Sbjct: 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------------------- 172
           + ++A    +  L++++ + D + E +A   LG     +GK                   
Sbjct: 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161

Query: 173 -YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
             + A+ ++   L +    G+ +    A+G + + +  LG+   A   +++
Sbjct: 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            G  L + G  R  + +    +Q+     +    +  Y  + + Y  L D  +A  ++  
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 63.8 bits (156), Expect = 9e-13
 Identities = 14/88 (15%), Positives = 31/88 (35%)

Query: 135 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194
           +A     A  +    +  P     A   LG       ++ EA      + Q +++ G+++
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 195 GSTEAYGAIADCYTELGDLERAARFYDK 222
               A   +       G+ + A R + +
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLE 91

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
             ++A   F+A  + AQ   D   E +A   +G   +  G +  A +      ++     
Sbjct: 41  RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100

Query: 192 E-YSGSTEAYGAIADCYTELGDLERAARFYDK 222
           E    ++     +A      GDL  A + Y+K
Sbjct: 101 EDPLAASANAYEVATVALHFGDLAGARQEYEK 132

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 132 DLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           + + A   F    EL  ++ +DP+     A  +       G    A + +   L  +++ 
Sbjct: 81  NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            +      A+  + D   +  +L  A + + +
Sbjct: 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 18/81 (22%), Positives = 28/81 (34%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           DL  A  E++ +L  AQ   D +    A RGLG   Q++    EA ++      I     
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181

Query: 192 EYSGSTEAYGAIADCYTELGD 212
           +     E    +         
Sbjct: 182 DSEAVNELMTRLNGLEHHHHH 202

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 18/105 (17%), Positives = 32/105 (30%)

Query: 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 180
           L      +   DL KA   ++ A  + +N +   +  +        L RQ K+ EA    
Sbjct: 119 LDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL 178

Query: 181 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                + +    Y    +   A         D   A +   +  S
Sbjct: 179 QKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
              F   + LE+A   +    E   N +      KA    G  L+   +  EA++Y    
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
             +    G    +  A         E  DL +A   Y +  +  E++
Sbjct: 103 SVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENE 148

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 5/63 (7%), Positives = 19/63 (30%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
              + +   +  +A   +    +          + +A+        +L  +  A ++ +K
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101

Query: 223 YIS 225
              
Sbjct: 102 ASV 104

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 128 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187
           +R Q  ++A    +    + + +++     K           +  Y  A K       I 
Sbjct: 166 VRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

Query: 188 EREGEYSGSTEA--YGAIADCYTELGDLERAARFY-DKYISRLESD 230
                +SGS +      +   Y E  D E+  R      ++ +++D
Sbjct: 226 ----GFSGSEDCAALEDLLQAYDE-QDEEQLLRVCRSPLVTYMDND 266

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           D     + F+AA+++    +D          LG +      Y +A++YH   L ++   G
Sbjct: 20  DCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +  G  +A G + +    LG+ + A     +
Sbjct: 78  DQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 63.0 bits (154), Expect = 6e-12
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
             L+ A   ++  L L   + D   + +A   LG +    G +R+A+  H   L I++  
Sbjct: 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           +   A    +  L +A+   D   E++A   LG +    G++  A +Y+   L ++ +  
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 25/91 (27%), Positives = 35/91 (38%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           D  KA       L LA+ + D + E KA+  LG +L+  G + EAI      L IS    
Sbjct: 58  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +  G   A   + + Y   G         D 
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------------------- 172
           + ++A    +  L++++ + D + E +A   LG     +GK                   
Sbjct: 98  NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157

Query: 173 -YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
             + A+  +   L +    G+ +    A+G + + +  LG+   A   +++
Sbjct: 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           QD EKA       L +AQ +KD I E +A   LG +    G + +A+ +    L+IS   
Sbjct: 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

Query: 191 GE 192
           G+
Sbjct: 337 GD 338

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            G  L + G  R  + +    +Q+     +    +  Y  + + Y  L D  +A  ++  
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G      ++  +A   ++ A +    V D IE+ +    +  +     +   ++ +    
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167

Query: 184 LQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDKYI 224
           L I +    YS  T ++   IA  Y +    ++A    +  +
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 17/105 (16%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
             N+   +  +KA    +AALELA ++++      +   +  S  R G  + A+++    
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228
            ++S  +       +    ++    + G  ++A +F ++ +  + 
Sbjct: 249 AKVSREKVPDLLP-KVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYHSMVLQISE 188
               +      AL++ Q    P+   +  +    +  +      Y +A+ +    L+++ 
Sbjct: 156 QTHVSMYHILQALDIYQ--NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213

Query: 189 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                     +   IA+ Y   GD + A   + K   
Sbjct: 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA--RGLGASLQRQGKYREAIKYHS 181
                +    +KAF   +  L+          ++     + +      + K  + + Y  
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF- 326

Query: 182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
                 E++  ++       + A  +      E+AA FY K +
Sbjct: 327 ------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 14/97 (14%), Positives = 29/97 (29%)

Query: 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185
              +        TE    +E  Q     + +  +    G     Q +Y EAI Y+    +
Sbjct: 70  EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129

Query: 186 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
                 +     E +  +A+ Y  +     +     +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
             ++ R+ D + A   F+ A ++++         K   GL  +L + G+ ++A ++    
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287

Query: 184 LQISEREG--EYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           L          Y        A+     +   +     +++K
Sbjct: 288 LDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 110 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 169
           +     E L  L  G N  +    + A   F+A   L     D   + +   GLGA  Q 
Sbjct: 13  LSEDTLEQLYAL--GFNQYQAGKWDDAQKIFQALCML-----DH-YDARYFLGLGACRQS 64

Query: 170 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229
            G Y +A++ +S    +                 A+C+ +LGDL+ A   +    +   +
Sbjct: 65  LGLYEQALQSYSYGALMD------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

Query: 230 D 230
            
Sbjct: 119 Q 119

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYH 180
           G    +N + + A   F  ALE  + + + +   K       LG   ++  KY EA+ YH
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 181 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
              L +  +          Y AI   ++ +G+ E A  ++   + 
Sbjct: 260 RQALVLIPQNA------STYSAIGYIHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G +F    + ++A   +  A +L +    P+        +G         + A ++ S  
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPM------LYIGLEYGLTNNSKLAERFFSQA 185

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           L I+               +     + G+ + A +++   + ++++ 
Sbjct: 186 LSIA------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 19/135 (14%)

Query: 87  IESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 146
            + +  +L              +   K E LL+ L  G    + +   +A    + AL L
Sbjct: 213 EKWFLDALEKIK-----AIGNEVTVDKWEPLLNNL--GHVCRKLKKYAEALDYHRQALVL 265

Query: 147 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 206
                           +G      G +  A+ Y    L +          T +   +  C
Sbjct: 266 IPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGLR------RDDTFSVTMLGHC 313

Query: 207 YTELGDLERAARFYD 221
                    A    D
Sbjct: 314 IEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 12/93 (12%)

Query: 130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 189
               E A      A  L +          A    G S   + ++ +A+  +    Q+   
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGP------AWIAYGHSFAVESEHDQAMAAYFTAAQLM-- 155

Query: 190 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
                G       I   Y    + + A RF+ +
Sbjct: 156 ----KGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
            +    N D +  +      +E        +           +L    K  E       +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLP------VHIGTLVELNKANELFYLSHKL 82

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDK 222
           + +      Y  +  ++ A+   Y  +G   E A R+  K
Sbjct: 83  VDL------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR-GLGASLQRQGKYREAIKYHSM 182
           G       D++ A   F+ AL L +  +   +   A    LG + ++   Y  AI   + 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            L +S      +     + AIA  Y        A     + ++
Sbjct: 542 GLLLS------TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G   ++  ++  A    +++  L Q   DP+        LG     +   + AI +    
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQY--DPL----LLNELGVVAFNKSDMQTAINHFQNA 501

Query: 184 LQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           L + ++           +  +   Y +L   + A    ++ + 
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 12/99 (12%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
                               LE+     D            ASL   G+  +     + +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYP------LHLASLHESGEKNKLYLISNDL 365

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +        +      + A+   Y  +  +  A R++ K
Sbjct: 366 VDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 12/99 (12%)

Query: 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
           F    + ++A + +  A  L Q    P         LG    + G    A +Y      +
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQGTHLPY------LFLGMQHMQLGNILLANEYLQSSYAL 470

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                           +        D++ A   +   + 
Sbjct: 471 F------QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
             + +A   F  +  +            A  G   S   +G++ +AI  ++   ++    
Sbjct: 387 NKISEARRYFSKSSTMDPQFGP------AWIGFAHSFAIEGEHDQAISAYTTAARL---- 436

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             + G+   Y  +   + +LG++  A  +     +
Sbjct: 437 --FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 9/104 (8%), Positives = 33/104 (31%), Gaps = 12/104 (11%)

Query: 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 181
               N   ++D  +   ++ +++   +   D             +L  + ++ + +   +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSD------LLLCKADTLFVRSRFIDVLAITT 329

Query: 182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            +L+I         + + Y        E G+  +     +  + 
Sbjct: 330 KILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
            +  K +      ++       P E+      +G       K  EA +Y S    +    
Sbjct: 353 GEKNKLYLISNDLVDR-----HP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--- 403

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
                   A+   A  +   G+ ++A   Y  
Sbjct: 404 ---PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 110 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 169
           +     + +       +F     +E+A   F+          D         GL A  Q 
Sbjct: 31  IPDDMMDDIYSY--AYDFYNKGRIEEAEVFFRFLCIY-----DF-YNVDYIMGLAAIYQI 82

Query: 170 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226
           + ++++A   +++   + +                 C   L    +A   ++  I  
Sbjct: 83  KEQFQQAADLYAVAFALGK------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 6/92 (6%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
                      +   L      P +              +G+  EA  +   +       
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            +Y         +A  Y      ++AA  Y  
Sbjct: 70  VDY------IMGLAAIYQIKEQFQQAADLYAV 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-09
 Identities = 46/267 (17%), Positives = 79/267 (29%), Gaps = 88/267 (32%)

Query: 22  LTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVN-EQLRQINAA 80
           L    + L    E   +    P  L  ++I  ++   LA       + VN ++L  I   
Sbjct: 311 LDCRPQDLPR--EVLTT---NPRRL--SIIAESIRDGLATWDN--WKHVNCDKLTTI--- 358

Query: 81  LRRQAKIESYAP--------SLSYAPVGSRIPEDEVIV----DPKKEELLSRLKTGKNFL 128
              ++ +    P         LS  P  + IP   ++     D  K +++  +    N L
Sbjct: 359 --IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVV----NKL 411

Query: 129 RNQDL-EKAFTEFKAAL-ELAQNVKDPIEEKKAARGLGASLQRQ--GKYREA-------- 176
               L EK   E   ++  +   +K  +E + A       L R     Y           
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYA-------LHRSIVDHYNIPKTFDSDDL 464

Query: 177 ------------IKYHSMVLQISEREGEYS--------------GSTEAYGAIADCYTEL 210
                       I +H   ++  ER   +                 + A+ A       L
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 211 GDLERAARFYDKYI-------SRLESD 230
             L    +FY  YI        RL + 
Sbjct: 525 QQL----KFYKPYICDNDPKYERLVNA 547

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYRE 175
           +L   +++ +  +R+     A +++++ ++            ++   +     +  K  E
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 176 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           AI+  S VLQ+         +  A    A+ Y      + A + Y+      E+D
Sbjct: 314 AIRVCSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 22/163 (13%)

Query: 60  ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 119
           AR +RG L     +  +++ A       + +   L   P  +   E +  +  K +E+  
Sbjct: 96  ARLQRGHLLL---KQGKLDEA------EDDFKKVLKSNPSENEEKEAQSQLI-KSDEMQR 145

Query: 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 179
                 N   + D   A       LE+         + +          ++G+ R+AI  
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISD 199

Query: 180 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
                ++       + +TEA+  I+  Y +LGD E +     +
Sbjct: 200 LKAASKLK------NDNTEAFYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 12/105 (11%)

Query: 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 180
           L+ GK  L    L  A ++F AA++      DP +   A           GK + A+   
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDG-----DP-DNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 181 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           + V+Q+          T A         + G L+ A   + K + 
Sbjct: 84  TKVIQLK------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL------GASLQRQGKYREAI 177
              + +  D E + +E +  L+L Q+ K      K  + L         L R G+Y +A 
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277

Query: 178 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             +  V++      EY  +  +   I  C+++      A R   + + 
Sbjct: 278 SKYESVMKTEPSIAEY--TVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 51.3 bits (123), Expect = 8e-09
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G + L+  +L +A   F+A  +     ++      A R LG +     K   AI   +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREE------AWRSLGLTQAENEKDGLAIIALNHA 77

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             +  +          + A+A  +T   +   A      ++ 
Sbjct: 78  RMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLL 113

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 181
           +    +   ++L  A   F  A +  +   +  E            +  G    A+    
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101

Query: 182 MVLQISEREGEYSGSTEAYGAIADCY-TELGDLERAARFYDKYISRLESD 230
             +QI    G++         + +    +L D  +A   Y+        D
Sbjct: 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGKYREAIKYHSM 182
            K F    +   A    + A+++  +             LG  L      Y +AI  + +
Sbjct: 84  YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143

Query: 183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226
             +   ++   + S + +   AD     G    A+  Y K I  
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 1/96 (1%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK-YHSMVLQISER 189
            D  KA   ++ A E     +      K            G+Y EA   Y  ++      
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

Query: 190 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                   + +     C     D   AAR   +  S
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 19/121 (15%)

Query: 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALEL----------AQNVKDPIEEKKAARGLG 164
           +E+L +       +      +A + F+  + L              K+     K A  L 
Sbjct: 5   DEMLQK---VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 165 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
            + ++   Y +A  ++  +LQ          + +   A A+     G  + A R Y+K +
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115

Query: 225 S 225
            
Sbjct: 116 Q 116

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 15/116 (12%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
            P   + L      +  +     + A   ++  L+L     +  +   A   LG      
Sbjct: 84  APNNVDCLEAC--AEMQVCRGQEKDALRMYEKILQL-----EA-DNLAANIFLGNYYYLT 135

Query: 171 G-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             + ++ ++     L    +         A              E+A     K I 
Sbjct: 136 AEQEKKKLETDYKKLSSPTK------MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
              + +N++ +KA+  +K  L+ A N  D +E              +G+ ++A++ +  +
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLE------ACAEMQVCRGQEKDALRMYEKI 114

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYDKYIS 225
           LQ+       + +  A   + + Y    + E+       K +S
Sbjct: 115 LQLE------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 176
           L   +++ +  +R+     A +++++ ++            ++   +     +  K  EA
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291

Query: 177 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           I+  S VLQ+         +  A    A+ Y      + A + Y+    
Sbjct: 292 IRICSEVLQMEPD------NVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           GK  L    L  A ++F AA++      DP +   A           GK + A+   + V
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDG-----DP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           + +          T A         + G L+ A   + K + 
Sbjct: 64  IALK------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 172
           K +E+        +     D   A T     LE+         + +          ++G+
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW------DAELRELRAECFIKEGE 169

Query: 173 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            R+AI       ++       S +TEA+  I+  Y +LGD E +     +
Sbjct: 170 PRKAISDLKAASKLK------SDNTEAFYKISTLYYQLGDHELSLSEVRE 213

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 110 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 169
           +     E L  L    N  ++   E A   F+A   L     D   + +   GLGA  Q 
Sbjct: 16  ISSDTLEQLYSL--AFNQYQSGXYEDAHXVFQALCVL-----DH-YDSRFFLGLGACRQA 67

Query: 170 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            G+Y  AI  +S    +   E             A+C  + G+L  A         
Sbjct: 68  MGQYDLAIHSYSYGAVMDIXE------PRFPFHAAECLLQXGELAEAESGLFLAQE 117

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
            FL  Q   E+A+     A +     +      +    LG    +  K  +A +Y    L
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERS----RVFENLGLVSLQMKKPAQAKEYFEKSL 168

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +++               +AD   +  +   A ++YD +  
Sbjct: 169 RLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           + + A  E++ AL                   G  L  Q +Y EA +      Q +    
Sbjct: 86  EPKLADEEYRKALASDSRNAR------VLNNYGGFLYEQKRYEEAYQRLLEASQDT---- 135

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            Y   +  +  +     ++    +A  +++K + 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
            L+ +   +A   F+ +L L     +   +   A  +   L ++ +Y  A +Y+ +  Q 
Sbjct: 151 SLQMKKPAQAKEYFEKSLRL-----NR-NQPSVALEMADLLYKEREYVPARQYYDLFAQG 204

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226
                    +  +            D + AA +  +    
Sbjct: 205 G------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           LG    ++G   +A       L+I         S +A+ A+A  +    + + A   Y K
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEID------PSSADAHAALAVVFQTEMEPKLADEEYRK 96

Query: 223 YIS 225
            ++
Sbjct: 97  ALA 99

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 12/101 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  +L+  + E+A    + ALE+  +  D      A   L    Q + + + A + +   
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSAD------AHAALAVVFQTEMEPKLADEEYRKA 97

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           L         S +            E    E A +   +  
Sbjct: 98  LASD------SRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 17/118 (14%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKA---FTEFKAALELAQNVKDPIEEKKAARGLGASL 167
                 + +R      +      + A      + + +   +               G  L
Sbjct: 33  KYNSPYIYNRR--AVCYYELAKYDLAQKDIETYFSKVNATKAKSA------DFEYYGKIL 84

Query: 168 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            ++G+   AI+ +   +         +   + YG I   +   G+   A ++ +K I 
Sbjct: 85  MKKGQDSLAIQQYQAAVDRD------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           GK  ++      A  +++AA++      D          +G+    +G +  AI+Y    
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLD------MYGQIGSYFYNKGNFPLAIQYMEKQ 134

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           ++ +      +   + +  +   Y    +  +A   + K + 
Sbjct: 135 IRPT------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 12/102 (11%), Positives = 19/102 (18%), Gaps = 9/102 (8%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
                +N +  +A   F            P                  KY  A K     
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAK--KYNSP----YIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                     S     +        + G    A + Y   + 
Sbjct: 64  FSKVNATKAKS---ADFEYYGKILMKKGQDSLAIQQYQAAVD 102

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG-ASLQRQGKYREAIKYHSM 182
           G+ +  N++  KA + F   LEL  N+          R    A+     K   A  Y+  
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGY----LWRARANAAQDPDTKQGLAKPYYEK 204

Query: 183 VLQISEREGEYSGS--TEAYGAIADCYTELGDLERAARFYDKYIS 225
           ++++    G        EA   IA  YT   D  +A   +   ++
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
               L +   Y EAI+  + +            S   Y   A CY EL   + A +  + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 223 YISRLESD 230
           Y S++ + 
Sbjct: 63  YFSKVNAT 70

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 15/105 (14%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  F    +   A    +  +                  LG +     +Y +A      V
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPK------VFYELGQAYYYNKEYVKADSSFVKV 168

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLER---AARFYDKYIS 225
           L++             Y   A          +   A  +Y+K I 
Sbjct: 169 LEL------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.2 bits (121), Expect = 9e-08
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 123 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 182
           T     + ++ EK   + +A   +     +P E+ + AR  G     +  +  A+K ++ 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYV-----NP-EKAEEARLEGKEYFTKSDWPNAVKAYTE 164

Query: 183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +++ +            Y   A    +L     A    +K I 
Sbjct: 165 MIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  F + +  ++A   +  A EL +++              A+   +G+Y  AI   +  
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELHKDIT-------YLNNRAAAEYEKGEYETAISTLNDA 64

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           ++              Y  I+  +  +G+         K I
Sbjct: 65  VEQ------GREMRADYKVISKSFARIGNAYHKLGDLKKTI 99

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 13/103 (12%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
            K+F R  +      + K  +E  Q                  L +     + +K     
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSL-------TEHRTADILTKLRNAEKELKKAEAE 131

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226
             ++    E +   E        Y    D   A + Y + I R
Sbjct: 132 AYVNP---EKA---EEARLEGKEYFTKSDWPNAVKAYTEMIKR 168

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           + E A +    A+E         E +   + +  S  R G     +      ++      
Sbjct: 53  EYETAISTLNDAVEQ-----GR-EMRADYKVISKSFARIGNAYHKLGDLKKTIEY----- 101

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            Y  S   +   AD  T+L + E+  +  +    
Sbjct: 102 -YQKSLTEHR-TADILTKLRNAEKELKKAEAEAY 133

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           GK +    D   A   +   ++       P E+ +      A+L +   + EAI   +  
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKR-----AP-EDARGYSNRAAALAKLMSFPEAIADCNKA 199

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           ++    +  +     AY   A     + +   A    D   +
Sbjct: 200 IEK---DPNFV---RAYIRKATAQIAVKEYASALETLDAART 235

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 12/105 (11%)

Query: 126 NFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
            FL  +     ++   F  AL              A    G    +QG++  A  Y    
Sbjct: 84  WFLCGRLNRPAESMAYFDKALADPTYPTPY----IANLNKGICSAKQGQFGLAEAYLKRS 139

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228
           L              A+  +A      G L  A  ++ KY SR+E
Sbjct: 140 LAAQ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G + L+  +L +A   F+A  +       P E ++A R LG +     K   AI   +  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQA-----AP-EREEAWRSLGLTQAENEKDGLAIIALNHA 81

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             +             + A+A  +T   +   A      ++ 
Sbjct: 82  RMLD------PKDIAVHAALAVSHTNEHNANAALASLRAWLL 117

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
           +  + + + A    + A+EL     D     +    LGA+L    + +EA+  ++  L I
Sbjct: 182 YNLSNNYDSAAANLRRAVEL--RPDDA----QLWNKLGATLANGNRPQEALDAYNRALDI 235

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +       G       +A  Y+ +   + AA+   + I 
Sbjct: 236 N------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 16/108 (14%)

Query: 128 LRNQ-DLEKAFTEFKAALEL---------AQNVKDPIEEKKAARGLGASLQRQGKYREAI 177
             N+ +   A    +A L                D   +    +          +YRE  
Sbjct: 99  HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158

Query: 178 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                 L+++          + + ++   Y    + + AA    + + 
Sbjct: 159 TLLHAALEMN------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G   L+  DL       +AA+       DP  + +A + LG +       + AI      
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQ-----DP-GDAEAWQFLGITQAENENEQAAIVALQRC 125

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           L++         + +A  A+A  YT     + A      +I 
Sbjct: 126 LELQ------PNNLKALMALAVSYTNTSHQQDACEALKNWIK 161

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
           F  + +  +A   F AAL +    +D          LGA+L    +  EA++ ++  L+I
Sbjct: 223 FHLSGEFNRAIDAFNAALTV--RPEDY----SLWNRLGATLANGDRSEEAVEAYTRALEI 276

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                   G   +   +      LG    A   +   +S
Sbjct: 277 Q------PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 8/92 (8%)

Query: 134 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 193
           +   +  +          +P ++   A   G    ++G     I +    +         
Sbjct: 44  QVTVSASEKGYYFHTE--NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ------D 95

Query: 194 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            G  EA+  +     E  + + A     + + 
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLE 127

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 12/105 (11%)

Query: 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 180
           ++      +  D E A               +P +       L +   +  +   +  + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQ-----EP-DNTGVLLLLSSIHFQCRRLDRSAHFS 56

Query: 181 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           ++ ++            EAY  + + Y E G L+ A   Y   + 
Sbjct: 57  TLAIKQ------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 128 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
              Q ++  A   F+ A+ L  N  D      A   LG  L+    +  A+  +   L +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           S            +G +A  Y E G ++ A   Y + I 
Sbjct: 233 S------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
           N L+    LE+A   +  A+E   N         A   LG     QG+   AI +    +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAV------AWSNLGCVFNAQGEIWLAIHHFEKAV 196

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            +           +AY  + +   E    +RA   Y + +S
Sbjct: 197 TLD------PNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 128 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
           L+ +  + +A   +  AL L     D      +   L    + QG   EA++ +   L++
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHAD------SLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                       A+  +A    + G L+ A   Y + I 
Sbjct: 335 F------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
           +P   E  S L  G  +     L++A   ++ AL L  +  D          L A+L   
Sbjct: 63  NPLLAEAYSNL--GNVYKERGQLQEAIEHYRHALRLKPDFID------GYINLAAALVAA 114

Query: 171 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           G    A++ +   LQ +               + +    LG LE A   Y K I 
Sbjct: 115 GDMEGAVQAYVSALQYN------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
               +   D+E A   + +AL+   ++            LG  L+  G+  EA   +   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYC------VRSDLGNLLKALGRLEEAKACYLKA 161

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           ++             A+  +   +   G++  A   ++K ++
Sbjct: 162 IET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 128 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
              Q  ++ A   ++ A+EL      P     A   L  +L+ +G   EA   ++  L++
Sbjct: 247 YYEQGLIDLAIDTYRRAIEL-----QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                      ++   +A+   E G++E A R Y K + 
Sbjct: 301 C------PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
           +P    +L  L       + + L+++      A++      +P    +A   LG   + +
Sbjct: 29  EPDNTGVLLLL--SSIHFQCRRLDRSAHFSTLAIKQ-----NP-LLAEAYSNLGNVYKER 80

Query: 171 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           G+ +EAI+++   L++           + Y  +A      GD+E A + Y   + 
Sbjct: 81  GQLQEAIEHYRHALRL------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
           N L+     ++A   +  AL L+ N             L      QG    AI  +   +
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           ++           +AY  +A+   E G +  A   Y+  + 
Sbjct: 265 ELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G   L+  DL  A   F+AA++      +      A + LG +     +   AI      
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQDPKHME------AWQYLGTTQAENEQELLAISALRRC 124

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           L++         +  A  A+A  +T      +A      ++ 
Sbjct: 125 LELK------PDNQTALMALAVSFTNESLQRQACEILRDWLR 160

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 9/111 (8%)

Query: 112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG 171
            + EE+  R      +L + D +     +    +  +   +P+ +       G    ++G
Sbjct: 22  AELEEMAKRDAEAHPWLSDYD-DLTSATYDKGYQFEEE--NPLRDHPQPFEEGLRRLQEG 78

Query: 172 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
               A+      +Q            EA+  +     E      A     +
Sbjct: 79  DLPNAVLLFEAAVQQ------DPKHMEAWQYLGTTQAENEQELLAISALRR 123

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 176
           L    +   + L +    +    F AA+ L     DP        GLG      G+Y +A
Sbjct: 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP----DVQCGLGVLFNLSGEYDKA 236

Query: 177 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +   +  L +             +  +          E A   Y + + 
Sbjct: 237 VDCFTAALSVR------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
           F  + + +KA   F AAL +      P  +      LGA+L    +  EA+  +   L++
Sbjct: 227 FNLSGEYDKAVDCFTAALSV-----RP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                   G   +   +      LG    A   + + ++
Sbjct: 281 Q------PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G    + +D EKA   +  A+EL  +  +            A    + K+ E +++    
Sbjct: 15  GNAAYKQKDFEKAHVHYDKAIEL--DPSNIT----FYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 184 LQI-SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +++  E   +Y    +A     + + +  DL  A +++ + +S
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
                  +      L+ + +         +  G        + EAIKY+   +++     
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAV--QLKNRGNHFFTAKNFNEAIKYYQYAIEL----- 54

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                   Y  I+ CY   GDLE+   F  K + 
Sbjct: 55  -DPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 22/202 (10%), Positives = 50/202 (24%), Gaps = 15/202 (7%)

Query: 26  FKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQA 85
              L+   + D +     L   +      V      +  G   +V      + +      
Sbjct: 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF----- 170

Query: 86  KIESYAPSLSYAPVGSRIPEDEVIVD-PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 144
               +   L  + V +    D          + L         + N  L K+   + + L
Sbjct: 171 -FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229

Query: 145 ELAQNVKDPIEEKKAA-RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 203
                     E    A    G     +    +A       + +            +Y  +
Sbjct: 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-------PNSYIFL 282

Query: 204 ADCYTELGDLERAARFYDKYIS 225
           A    +  + +   +F+ K + 
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD 304

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           QD + A  +F+ A  L     +P E       L   L +QGK+ E+  + +         
Sbjct: 324 QDYKNAKEDFQKAQSL-----NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK---- 373

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             +    E     A+  T+ GD + A + YD    
Sbjct: 374 --FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 15/115 (13%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
                  L     G       +L  A    + ++ L            +   L  +L  +
Sbjct: 239 RENAALALCYT--GIFHFLKNNLLDAQVLLQESINLHPTPN-------SYIFLALTLADK 289

Query: 171 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
              +E  K+    + ++            Y      Y  L D + A   + K  S
Sbjct: 290 ENSQEFFKFFQKAVDLN------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G +F   ++  +A   ++ A+EL     DP  E      + A     G   + I++ +  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIEL-----DP-NEPVFYSNISACYISTGDLEKVIEFTTKA 85

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           L+I          ++A    A     LG+   A      
Sbjct: 86  LEIK------PDHSKALLRRASANESLGNFTDAMFDLSV 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           ++ ++ F  F+ A++L     +P E        G        Y+ A +       ++   
Sbjct: 290 ENSQEFFKFFQKAVDL-----NP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--- 340

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226
                +   Y  +A    + G    +  F+++   +
Sbjct: 341 ---PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 16/105 (15%)

Query: 131 QDLEKAFTEFKAALELAQN----------VKDPIEEKKAARGLGASLQRQGKYREAIKYH 180
            D + A  ++  A  L +           +               +   + K+  AIK  
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451

Query: 181 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +   ++  R      S +A   +A    ++  ++ A   ++    
Sbjct: 452 TKACELDPR------SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 172
           K   L  +       L  +    A      A EL     DP   ++A  GL     +  K
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-----DP-RSEQAKIGLAQLKLQMEK 477

Query: 173 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228
             EAI+       ++          E   A    + E   +++  R      +++E
Sbjct: 478 IDEAIELFEDSAILARTMD------EKLQATT--FAEAAKIQKRLRADPIISAKME 525

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185
              +  D ++A    K   E +   +      +   G   ++  Q          +    
Sbjct: 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG---NISEQTLMERLKADATDNTS 209

Query: 186 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           ++E        +E    +   Y  LGDL+ A   +   ++
Sbjct: 210 LAEH------LSETNFYLGKYYLSLGDLDSATALFKLAVA 243

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)

Query: 105 EDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG 164
               + D ++ +LL     G  +        A  +F  AL +  ++ +          LG
Sbjct: 33  ASRALTDDERAQLLYER--GVLYDSLGLRALARNDFSQALAIRPDMPE------VFNYLG 84

Query: 165 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
             L + G +  A +    VL++            A+          G  + A      + 
Sbjct: 85  IYLTQAGNFDAAYEAFDSVLELD------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138

Query: 225 S 225
            
Sbjct: 139 Q 139

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 11/97 (11%), Positives = 26/97 (26%), Gaps = 12/97 (12%)

Query: 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185
           N      +E+   +      LA+++ +          LG      G    A     + + 
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSE------TNFYLGKYYLSLGDLDSATALFKLAVA 243

Query: 186 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            +        +   +       + LG  +      D+
Sbjct: 244 NN------VHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
              +A   ++ A+      KD  E      GLG++ +  G+YR+A    +  ++      
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAE---CYLGLGSTFRTLGEYRKAEAVLANGVKQ----- 56

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
            +          A     LG  E+      K I+    D
Sbjct: 57  -FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 170 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226
            G   +A+ Y+   +    +  + +   E Y  +   +  LG+  +A       + +
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLA---ECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK-KAARGLGASLQRQGKYREAIKYHSM 182
              +  N  L+K    F+  L+  + + D  E   K       +L    +Y E++   + 
Sbjct: 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221

Query: 183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 220
            ++IS R    +   + Y    +C  +L   E      
Sbjct: 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 15/119 (12%), Positives = 42/119 (35%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
               E             + +  ++ + +    L+  +   +  +  +    + A + ++
Sbjct: 69  YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK 128

Query: 171 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229
             Y   I     +L       +   +     AIA+ Y E G L++    +++ + +LE+
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA 187

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           Q+ ++A  +F  A EL     DP E       L     R+ K+ +     S   +     
Sbjct: 318 QNYDQAGKDFDKAKEL-----DP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE- 370

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226
                + E     A+  T+  D ++A + YD  I  
Sbjct: 371 -----APEVPNFFAEILTDKNDFDKALKQYDLAIEL 401

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 15/142 (10%)

Query: 84  QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 143
               ES+  +            ++  +  K    L     G       D   A  + K A
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT--GIFKFLKNDPLGAHEDIKKA 263

Query: 144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 203
           +EL   V        +   +   +  +    E   Y    L++       S     Y   
Sbjct: 264 IELFPRVN-------SYIYMALIMADRNDSTEYYNYFDKALKLDS---NNS---SVYYHR 310

Query: 204 ADCYTELGDLERAARFYDKYIS 225
                 L + ++A + +DK   
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE 332

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  F RN+  + A   +  ALEL ++             L A     G  ++ ++  +  
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           L++          ++     A     LG    A      
Sbjct: 66  LELK------PDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA---RGLGASL 167
            P+  E+ +     +      D +KA  ++  A+EL   +               L    
Sbjct: 368 FPEAPEVPNFF--AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425

Query: 168 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                + EA        ++  R      S +A   +A    +  D++ A   +++   
Sbjct: 426 PTVENFIEATNLLEKASKLDPR------SEQAKIGLAQMKLQQEDIDEAITLFEESAD 477

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            G    R  KY +AIKY++  L++ E           Y  ++ CY  +GDL++      K
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKEDP-------VFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 223 YIS 225
            + 
Sbjct: 65  ALE 67

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 11/115 (9%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
           DP+      +L       R    +   T F  A         P E  +        L  +
Sbjct: 334 DPENIFPYIQL--ACLAYRENKFDDCETLFSEAKRK-----FP-EAPEVPNFFAEILTDK 385

Query: 171 GKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDK 222
             + +A+K + + +++  +                +      + +   A    +K
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 220
           L    + Q KY+EA    +  L I E+  G+   +       +A  Y + G  + A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 221 DK 222
            +
Sbjct: 109 KR 110

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 220
           L    Q QGK  E   Y+   L+I     G    +  +    +A CY + G  + A   Y
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 221 DK 222
            +
Sbjct: 193 KE 194

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 220
           L     ++GKY+EA       L+I E+  G++     +    +A      G  E    +Y
Sbjct: 91  LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150

Query: 221 DK 222
            +
Sbjct: 151 RR 152

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYD 221
                + + K R++  Y        +     S +      ++   Y   G LE A    D
Sbjct: 218 AEEREESKDKRRDSAPYGEYGSWY-KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276

Query: 222 K 222
            
Sbjct: 277 C 277

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST-EAYGAIADCYTELGDLERAARF 219
           L +   +QGKY++A   +  +L  +  +  G  +G     +    +          +A +
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 220 YDK 222
            + 
Sbjct: 235 GEY 237

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
                +   L++A   +K A+ ++           A   +G +L+     + A++ ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPT--FA----DAYSNMGNTLKEMQDVQGALQCYTRA 103

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +QI+          +A+  +A  + + G++  A   Y   + 
Sbjct: 104 IQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
           N  R Q ++E+A   ++ ALE+            A   L + LQ+QGK +EA+ ++   +
Sbjct: 17  NIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +IS          +AY  + +   E+ D++ A + Y + I 
Sbjct: 71  RIS------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G      QD++ A   +  A+++     D      A   L +  +  G   EAI  +   
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQINPAFAD------AHSNLASIHKDSGNIPEAIASYRTA 137

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227
           L++           +AY  +A C   + D         K +S +
Sbjct: 138 LKLKPDFP------DAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           L    + QG   EA++ +   L++      +     A+  +A    + G L+ A   Y +
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKE 68

Query: 223 YIS 225
            I 
Sbjct: 69  AIR 71

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.8 bits (107), Expect = 8e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 220
           L      QG+Y  A+      L+  E+  G            +A  Y +    + AA   
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 221 DK 222
           + 
Sbjct: 93  ND 94

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 220
           L    + Q KY++A    +  L I E+  G+   +       +A  Y + G  + A    
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134

Query: 221 DK 222
            +
Sbjct: 135 KR 136

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 220
           L     ++GKY+EA       L+I E+  G+      +    +A      G  E    +Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176

Query: 221 DK 222
            +
Sbjct: 177 QR 178

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 220
           L    Q QGKY E   Y+   L+I + + G    +  +    +A CY + G  ++A   Y
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 221 DK 222
            +
Sbjct: 219 KE 220

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST-EAYGAIADCYTELGDLERAARF 219
           L +   +QGK+++A   +  +L  +     G         +    +     G  +    F
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260

Query: 220 YDK 222
            + 
Sbjct: 261 GEY 263

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYD 221
                + +GK ++   +        +     S +       +   Y   G  E A    +
Sbjct: 244 AEEREECKGKQKDGTSFGEYGGWY-KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302

Query: 222 K 222
            
Sbjct: 303 A 303

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.4 bits (101), Expect = 9e-06
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 128 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186
             +  +  ++   F+ A++L     DP EE K     G +L    +Y EA+  ++ V+ +
Sbjct: 16  QYDAGNYTESIDLFEKAIQL-----DP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV 69

Query: 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            E       + + + A AD    +   E  A   +    
Sbjct: 70  IED----EYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            G      G Y E+I      +Q+   + E S   + +         L   E A   Y+ 
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQL---DPEES---KYWLMKGKALYNLERYEEAVDCYNY 65

Query: 223 YIS 225
            I+
Sbjct: 66  VIN 68

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 12/94 (12%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
           D  +   + +AA+        P ++  A   L  +    G            L +     
Sbjct: 4   DGPRELLQLRAAVRH-----RP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL----- 52

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            + G  EA   +            AA    +   
Sbjct: 53  -HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 14/119 (11%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
            P   E ++RL  G+     Q   +A    + A + A            A  LG +L+  
Sbjct: 53  HPGHPEAVARL--GRVRWTQQRHAEAAVLLQQASDAAPEHPG------IALWLGHALEDA 104

Query: 171 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229
           G+   A   ++   Q+                + +    L D         +  + +  
Sbjct: 105 GQAEAAAAAYTRAHQLLP------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
             L      + A    + A+EL     +   + +A    G  L  +G   EA+   + V 
Sbjct: 133 TVLVKLEQPKLALPYLQRAVEL-----NE-NDTEARFQFGMCLANEGMLDEALSQFAAVT 186

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +         G  +A+      Y    + E+A    DK I 
Sbjct: 187 EQD------PGHADAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 12/102 (11%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
                   D EKA   F  A+E  +                  L    +   A+ ++   
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAI------PYINFANLLSSVNELERALAFYDKA 83

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           L++       S +  AY    + Y      + A   ++K + 
Sbjct: 84  LELD------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
           N    +   ++A   F+ AL          E       LG  L +  + + A+ Y    +
Sbjct: 99  NVYVVKEMYKEAKDMFEKALRA-----GM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +++         TEA      C    G L+ A   +     
Sbjct: 153 ELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
           N L +  +LE+A   +  ALEL     D      A  G G     +  Y+EA       L
Sbjct: 65  NLLSSVNELERALAFYDKALEL-----DS-SAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +          + + +  +     +L   + A  +  + + 
Sbjct: 119 RAG------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 133 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192
           +  +      +  L    +                   G Y +A +  +  ++       
Sbjct: 1   MGSSHHHHHHSSGL--VPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------ 52

Query: 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                  Y   A+  + + +LERA  FYDK + 
Sbjct: 53  NKEDAIPYINFANLLSSVNELERALAFYDKALE 85

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
            +  L++ +  +A   F+  +E      DP +       LG   +R  +  +AI  ++  
Sbjct: 14  AQEHLKHDNASRALALFEELVET-----DP-DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 220
           ++++  EG      +    + D   +   LE     +
Sbjct: 68  IEVAREEGT----QKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 6/64 (9%)

Query: 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 221
            L     +      A+     +++      +Y      Y  +   Y  L   + A   Y 
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDP---DYV---GTYYHLGKLYERLDRTDDAIDTYA 65

Query: 222 KYIS 225
           + I 
Sbjct: 66  QGIE 69

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 110 VDPKKEELLSRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQ 168
             PK  E  S L      L N    + A    + A+ L  N  +   +   A  L    +
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMRE 224

Query: 169 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
              +  E  K     L+ +       G T+   + A  Y    + ++A     K + 
Sbjct: 225 EGEEEGEGEKLVEEALEKA------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 24/134 (17%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
           +     + S L            E+A   F+           P+ ++      G     Q
Sbjct: 330 NDNLFRVCSIL--ASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLYQ 384

Query: 171 GK-YREAIKYHSMVLQISEREGEYSGS------------------TEAYGAIADCYTELG 211
            K   +AI +    ++I+++  E                      +EA   +A       
Sbjct: 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444

Query: 212 DLERAARFYDKYIS 225
            +++A    ++ + 
Sbjct: 445 KMQQADEDSERGLE 458

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 21/128 (16%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------------VKDPIEEK 157
            P   ++L      K + R  + +KA    K ALE   N              K      
Sbjct: 243 APGVTDVLRSA--AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300

Query: 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 217
               G+    +       A+ +     +                 +A  +      E A 
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEA------NDNLFRVCSILASLHALADQYEEAE 354

Query: 218 RFYDKYIS 225
            ++ K  S
Sbjct: 355 YYFQKEFS 362

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 25/107 (23%)

Query: 126 NFLRNQ-DLEKAFTEFKAALEL------AQNVKDPIEEKKAARGLGASLQRQGKYREAIK 178
           N    Q D ++A   ++ ALEL      A               LG +  +QG Y EAI+
Sbjct: 9   NAYYKQGDYDEAIEYYQKALELDPRSAEAWY------------NLGNAYYKQGDYDEAIE 56

Query: 179 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           Y+   L++         S EA+  + + Y + GD + A  +Y K + 
Sbjct: 57  YYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 5e-05
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
           N    Q D ++A   ++ ALEL     +      A   LG +  +QG Y EAI+Y+   L
Sbjct: 43  NAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIEYYQKAL 96

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           ++         S EA+  + + Y + GD + A  +Y K + 
Sbjct: 97  ELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           LG +  +QG Y EAI+Y+   L++         S EA+  + + Y + GD + A  +Y K
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 223 YIS 225
            + 
Sbjct: 61  ALE 63

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 125 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMV 183
           K     +++EK   + +  L  AQ       E +A    G +L     Y  EA    S  
Sbjct: 76  KQQDVQEEMEKTLQQMEEVLGSAQV------EAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           +++           EA+  + + Y + GD+  A   +   ++
Sbjct: 130 VKL------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 9/92 (9%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           +  ++A + +  A ++ +      +            + +  Y EA++  S    +    
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPD---LHLNRATLHKYEESYGEALEGFSQAAALD--- 288

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
                  E           L  L        K
Sbjct: 289 ---PAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 13/117 (11%), Positives = 42/117 (35%), Gaps = 17/117 (14%)

Query: 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL--------Q 168
           +L +L+T      ++ +  +  + K A+++  +V D     ++   LG +         Q
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDG----RSWYILGNAYLSLYFNTGQ 232

Query: 169 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                ++A+  ++   ++  +        + +   A  +        A   + +  +
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNP---DLHLNRATLHKYEESYGEALEGFSQAAA 286

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 25/107 (23%)

Query: 126 NFLRNQ-DLEKAFTEFKAALEL------AQNVKDPIEEKKAARGLGASLQRQGKYREAIK 178
           N    Q D ++A   ++ ALEL      A               LG +  +QG Y EAI+
Sbjct: 17  NAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIE 64

Query: 179 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           Y+   L++         + EA+  + + Y + GD + A  +Y K + 
Sbjct: 65  YYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           LG +  +QG Y EAI+Y+   L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 223 YIS 225
            + 
Sbjct: 69  ALE 71

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
               L  QG    A++     LQ      E  G  EAY  + + Y +LGD ++A   Y  
Sbjct: 6   TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60

Query: 223 YIS 225
            I 
Sbjct: 61  AIE 63

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 13/69 (18%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 177
           + +LKT K  +   D+E A    +  L+      +P+ + +A   +G + ++ G +++A+
Sbjct: 1   MDQLKTIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKAL 55

Query: 178 KYHSMVLQI 186
             +   +++
Sbjct: 56  NNYQSAIEL 64

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 10/101 (9%), Positives = 23/101 (22%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
                     +A    +   +      D       A  LG +  + G      +     L
Sbjct: 16  ISHAKAGRYSQAVMLLEQVYDADAFDVD------VALHLGIAYVKTGAVDRGTELLERSL 69

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
             +        + +    +   Y ++   + A     K   
Sbjct: 70  ADA------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 8e-05
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
                    + A        E      +P         LG +L   G++ EAI    + L
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEA-----NP-INFNVRFRLGVALDNLGRFDEAIDSFKIAL 137

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
            +           + + AIA  Y ++G  E A   + K   
Sbjct: 138 GLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 13/101 (12%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
                   +++     + +L  A +          A  LG +  +  KY  A+     V 
Sbjct: 50  IAYVKTGAVDRGTELLERSLADAPDNVK------VATVLGLTYVQVQKYDLAVPLLIKVA 103

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           + +        +      +      LG  + A   +   + 
Sbjct: 104 EAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            G S  + G+Y +A+     V          +   +    +   Y + G ++R     ++
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 223 YIS 225
            ++
Sbjct: 68  SLA 70

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 133 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192
           ++      +A L    +  + +        LG +     ++  A+ +    L        
Sbjct: 1   MQAITERLEAMLAQGTD--NML----LRFTLGKTYAEHEQFDAALPHLRAALDFDP---T 51

Query: 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           YS    A+  +       GD   A + ++  ++
Sbjct: 52  YS---VAWKWLGKTLQGQGDRAGARQAWESGLA 81

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           LG +  +QG Y EAI+Y+   L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 223 YIS 225
            + 
Sbjct: 69  ALE 71

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
            LE+A +  K A  +     +P          G      G+  +A       L + +   
Sbjct: 99  YLEQALSVLKDAERV-----NP-RYAPLHLQRGLVYALLGERDKAEASLKQALALED--- 149

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
               + E   A+A+ Y  +G L+ A   Y K + 
Sbjct: 150 ----TPEIRSALAELYLSMGRLDEALAQYAKALE 179

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 14/98 (14%)

Query: 126 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184
                  + +KA    K AL L    +           L       G+  EA+  ++  L
Sbjct: 126 LVYALLGERDKAEASLKQALALEDTPE-------IRSALAELYLSMGRLDEALAQYAKAL 178

Query: 185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           + +          +     A      G  E AAR    
Sbjct: 179 EQA------PKDLDLRVRYASALLLKGKAEEAARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           LG  L   G+Y  A+      L+ +          EA   +A    +LG +  A      
Sbjct: 11  LGVQLYALGRYDAALTLFERALKEN------PQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 223 YIS 225
            ++
Sbjct: 65  LVA 67

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 139 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198
           ++K AL+    V+DP    +    +G          EA K  +  +   +          
Sbjct: 21  DWKGALDAFSAVQDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAV 72

Query: 199 AYGAIADCYTELGDLERAARFYDKYISRLESD 230
           AY      Y +    + A +   + + +L  +
Sbjct: 73  AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G  +   +++ +A   F  ++   +++        A    G    +  KY  AIK     
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAV------AYFQRGMLYYQTEKYDLAIKDLKEA 97

Query: 184 LQISER----------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           L                     + E    IA  Y +  + ++A        S
Sbjct: 98  LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 2/100 (2%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-E 190
           +L ++    +   ++A+          +       L  QG  + A +      Q+     
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 191 GEYSGSTE-AYGAIADCYTELGDLERAARFYDKYISRLES 229
            E     E      A        L+ A       I  L S
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
           G +  + +D + A   +  A EL     DP           A    +G Y +  +     
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKEL-----DP-TNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 184 LQI-SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           +++  E   +Y    +AY  I + Y +    + A  FY+K
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 10/94 (10%), Positives = 22/94 (23%), Gaps = 12/94 (12%)

Query: 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191
            +++       A  L      P E+  A    G   Q     +  +        ++    
Sbjct: 359 TVQRLLPVLCQAHGL-----TP-EQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 408

Query: 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                  A  +       L  ++R      +   
Sbjct: 409 --PEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 9/95 (9%), Positives = 23/95 (24%), Gaps = 12/95 (12%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           + +++       A  L      P ++  A    G   Q     +  +        ++   
Sbjct: 290 ETVQRLLPVLCQAHGL-----TP-QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--- 340

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                   A  +       L  ++R      +   
Sbjct: 341 ---PQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 12/95 (12%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           + +++       A  L      P ++  A        Q     +  +        ++   
Sbjct: 256 ETVQRLLPVLCQAHGL-----TP-QQVVAIASNSGGKQALETVQRLLPVLCQAHGLT--- 306

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                   A  +       L  ++R      +   
Sbjct: 307 ---PQQVVAIASNGGGKQALETVQRLLPVLCQAHG 338

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 12/95 (12%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
           + +++       A  L      P ++  A        Q     +  +        ++   
Sbjct: 324 ETVQRLLPVLCQAHGL-----TP-QQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--- 374

Query: 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
                   A  +       L  ++R      +   
Sbjct: 375 ---PEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 11/106 (10%)

Query: 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 176
           L+  ++  ++ L  + L    TE    + L +     I      +    S   +GK  E+
Sbjct: 241 LVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI----IYQIKAVSALVKGKTDES 296

Query: 177 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
            +  +  + +         S   Y  +   Y   G    AA  Y  
Sbjct: 297 YQAINTGIDLEM-------SWLNYVLLGKVYEMKGMNREAADAYLT 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.74
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.73
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.71
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.71
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.68
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.68
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.67
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.66
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.65
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.65
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.64
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.63
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.63
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.63
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.62
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.62
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.59
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.57
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.57
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.56
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.56
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.54
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.53
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.52
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.52
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.51
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.48
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.47
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.46
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.46
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.45
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.45
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.45
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.43
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.42
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.41
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.41
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.41
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.4
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.39
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.39
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.39
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.38
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.38
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.37
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.37
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.37
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.34
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.33
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.33
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.33
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.33
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.32
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.32
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.31
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.31
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.3
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.3
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.3
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.3
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.28
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.27
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.26
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.26
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.26
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.24
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.24
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.23
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.21
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.2
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.2
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.19
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.18
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.18
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.17
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.16
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.15
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.13
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.1
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.1
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.1
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.1
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.09
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.06
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.03
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.03
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.03
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.02
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.02
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.01
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.01
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.01
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.0
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.0
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.99
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.99
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.99
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.97
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.95
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.88
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.85
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.81
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.74
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.64
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.64
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.54
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.54
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.53
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.46
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.44
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.36
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.34
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.33
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.31
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.29
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.28
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.27
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.22
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.2
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.19
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.15
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.03
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.01
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.0
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.92
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.88
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.86
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.83
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.47
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.18
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.18
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.02
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.93
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.88
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.71
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.58
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.49
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.35
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.24
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.16
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.08
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.93
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.91
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.9
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.82
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.8
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.5
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.41
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.1
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.51
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.37
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.32
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.26
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	92.26
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	91.89
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.8
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.08
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	89.99
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.48
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	89.15
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	87.76
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	87.52
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.37
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	86.99
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.93
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.64
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.51
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.17
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.08
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	85.4
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	85.2
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	83.87
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	83.51
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	82.6
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	81.78
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.45
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	80.99
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.22

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.75  E-value=3.5e-17  Score=114.56  Aligned_cols=104  Identities=15%  Similarity=0.258  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      +..+.++.++|..|+..|+|++|+.+|++++++.+.      ...++.++|.++..+|++++|+.+|++++++.      
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------   77 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLD------   77 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh------
Confidence            346678889999999999999999999999997655      67899999999999999999999999999985      


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      |..+.+|+++|.+|..+|++++|+.+|++++++.++
T Consensus        78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~  113 (126)
T 4gco_A           78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS  113 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence            778899999999999999999999999999998654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.74  E-value=5e-17  Score=117.35  Aligned_cols=102  Identities=13%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ....+++.+|..++..|++++|+.+|++++++.+.      .+.++.++|.++...|+|++|+++|++++.+.      |
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~------P  101 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG------K  101 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------S
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------C
Confidence            37778999999999999999999999999997665      67899999999999999999999999999996      7


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+.+|+++|.+|..+|++++|+.+|++++++.+
T Consensus       102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7889999999999999999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.73  E-value=1.4e-16  Score=111.50  Aligned_cols=108  Identities=16%  Similarity=0.334  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-c
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-Y  193 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~-~  193 (230)
                      ..+.++.++|..++..|+|++|+.+|++++++.+.      ...++.++|.++..+|+|++|+++|++++++.+.... .
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            45667889999999999999999999999997665      5788999999999999999999999999999866443 3


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +..+.+|.++|.++..+|++++|+.+|++++...+
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            34567999999999999999999999999998643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.73  E-value=7.7e-16  Score=110.29  Aligned_cols=141  Identities=23%  Similarity=0.288  Sum_probs=124.0

Q ss_pred             HHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948           79 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK  158 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~  158 (230)
                      ...+.+.++..+.+++...+.          .++....+.++..+|.++...|++++|+.++++++++.+..++......
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           21 LLGNFRDAVIAHEQRLLIAKE----------FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHH----------hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            334566677777777777665          2445556678889999999999999999999999999999889888899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++.++|.++...|++++|++++++++++.+..++.+....++.++|.++...|++++|..++++++++.++
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888887888899999999999999999999999999998753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.72  E-value=2.7e-16  Score=113.28  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-H
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI-S  187 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~------~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~-~  187 (230)
                      ..+..+..+|..++..|+|++|+..|++++++.+..      ...+....++.++|.++..+|+|++|+.+|++++++ .
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            356678899999999999999999999999999874      223345669999999999999999999999999998 2


Q ss_pred             HHhCCcccHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 026948          188 EREGEYSGSTEAY----GAIADCYTELGDLERAARFYDKYISRLESD  230 (230)
Q Consensus       188 ~~~~~~~~~~~~~----~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  230 (230)
                      +...-.|+...+|    +++|.++..+|++++|+.+|++++++.++|
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            2222237888999    999999999999999999999999987654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.71  E-value=9.4e-16  Score=122.09  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=118.2

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAA  160 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~~  160 (230)
                      ..+.++..+.+++.....          ..+....+.++..+|.+|...|++++|+.+|+++++..+.. .+......++
T Consensus       130 ~~~~Ai~~~~~al~~~~~----------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLT----------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCC----------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcc----------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            346666667777765443          13334566678999999999999999999999999999887 6777788899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  228 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~  228 (230)
                      +++|.+|..+|+|++|++++++++++.++.++....+.+++++|.+|..+| ++++|+.+|++|+.+++
T Consensus       200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888888999999999999999 57999999999999875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.71  E-value=9.4e-16  Score=122.20  Aligned_cols=143  Identities=15%  Similarity=0.108  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH
Q 026948           76 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  155 (230)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  155 (230)
                      ......+.+.++..|.+++...+.          .++....+.++.++|.+|..+|++++|+.+|++++++.+..++...
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~  115 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            333344678888888888888765          3555566778999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 EKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.++.++|.+|... |++++|+.+|++++++.+..++......++.++|.++..+|+|++|+.+|++++++.+
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  189 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            899999999999996 9999999999999999877665555578899999999999999999999999998754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.70  E-value=1.7e-15  Score=124.74  Aligned_cols=137  Identities=13%  Similarity=0.117  Sum_probs=107.1

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKA  159 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~  159 (230)
                      .+.+.++..+.+++.....          .+++...+.++..+|.+|...|++++|+.++.+++++.+..++ .+..+.+
T Consensus       117 g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  186 (383)
T 3ulq_A          117 REYLSAIKFFKKAESKLIF----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC  186 (383)
T ss_dssp             TCHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence            3556677777777766554          3455556777888888888888888888888888888887766 6667778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +.++|.++...|+|++|+++|++++++.++.++.+..+.++.++|.+|..+|++++|+.+|++++++.
T Consensus       187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888887777777777788888888888888888888888888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.70  E-value=2.8e-15  Score=123.46  Aligned_cols=149  Identities=17%  Similarity=0.204  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCc-cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      +...+.......+.+.++..+.+++...+.          .++ ....+.++..+|.+|...|++++|+.++.+++++.+
T Consensus       146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  215 (383)
T 3ulq_A          146 FFKMSESYYYMKQTYFSMDYARQAYEIYKE----------HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE  215 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            333344444444678888888888888776          233 556677889999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..++......++.++|.++..+|++++|+++|++++++.++..+.+..+.++.++|.+|..+|++++|+.++++++++.+
T Consensus       216 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988887677899999999999999999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.69  E-value=2.3e-16  Score=113.65  Aligned_cols=120  Identities=12%  Similarity=0.108  Sum_probs=102.8

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      ..+.++..+++++...|.                ....++.+|.+|+..|+|++|+.+|++++++.++      ...++.
T Consensus        12 ~~e~ai~~~~~a~~~~p~----------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~   69 (150)
T 4ga2_A           12 DVERYIASVQGSTPSPRQ----------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHR   69 (150)
T ss_dssp             HHHHHHHHHHHHSCSHHH----------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             hHHHHHHHHHHhcccCcc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            445566666666655544                5567889999999999999999999999997665      678999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF-YDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~-~~~al~~~~~  229 (230)
                      ++|.++...|++++|+.+|++++++.      |..+.++.++|.+|...|++++|... +++++++.+.
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~  132 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELN------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG  132 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence            99999999999999999999999996      77899999999999999999887765 5999987654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.68  E-value=2.9e-15  Score=119.24  Aligned_cols=136  Identities=17%  Similarity=0.114  Sum_probs=113.0

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH-HHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE-KKAAR  161 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~-~~~~~  161 (230)
                      .+.++..+.+++...+.          ..+....+.+++.+|.+|...|++++|+.+|++++++.+..++.... ..+++
T Consensus       131 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~  200 (293)
T 2qfc_A          131 YEYCILELKKLLNQQLT----------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHHHHHHHHTTCCC----------SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence            44555555555554443          13333456688999999999999999999999999998877655543 38999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRLE  228 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~~  228 (230)
                      ++|.+|..+|+|++|++++++++++....++....+.+++++|.+|..+|++++| ..+|++|+.+++
T Consensus       201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999877777777899999999999999999999 888999998774

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.68  E-value=3.2e-15  Score=123.04  Aligned_cols=137  Identities=15%  Similarity=0.127  Sum_probs=110.6

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAA  160 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~~  160 (230)
                      +.+.++..+.+++.....          .+++...+.+++.+|.+|...|++++|+.++.+++++.+..++ ....+.++
T Consensus       116 ~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPF----------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            456677777777766654          3455667778888888888889999999999888888887765 55678888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++|.++...|+|++|+++|++++++.++.++.+..+.++.++|.+|..+|++++|+.+|++++++.+
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  253 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR  253 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            88888888888999999999888888887777777788888888888888888888888888888553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.67  E-value=8.9e-15  Score=109.27  Aligned_cols=141  Identities=13%  Similarity=0.058  Sum_probs=122.5

Q ss_pred             HHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHH
Q 026948           78 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEE  156 (230)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~  156 (230)
                      ....+.+.++..+.+++.....          .++....+.++..+|.++...|++++|+.++.+++++.+..++ ....
T Consensus        37 ~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           37 AFMDRFDEARASFQALQQQAQK----------SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence            3334566677777777777665          3556667788999999999999999999999999999998884 4478


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..++.++|.++...|++++|+.++++++++.+..++......++.++|.++...|++++|..++++++++.+
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999888887777788899999999999999999999999999875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.67  E-value=2.3e-15  Score=120.76  Aligned_cols=114  Identities=16%  Similarity=0.073  Sum_probs=68.6

Q ss_pred             cCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948          110 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       110 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~  189 (230)
                      .++....+.++.++|.+|.. |++++|+.+|++++++.+..++......++.++|.++..+|+|++|+.+|++++.+...
T Consensus       109 ~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          109 NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34444445555566666665 66666666666666666665555555566666666666666666666666666666655


Q ss_pred             hCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          190 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       190 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      .+..+....++.++|.++..+|++++|+.+|++++
T Consensus       188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            55444444456666666666666666666666665

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.66  E-value=9.7e-16  Score=136.08  Aligned_cols=133  Identities=14%  Similarity=0.195  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      +.+++.+..+...++.++++..|++++...|.                ...+++++|.+|..+|++++|+.+|++++++.
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~   73 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS   73 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44555555666666777777777777777665                34567777777777777777777777777765


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +.      ...+++++|.++..+|++++|+++|++++++.      |..+.+|.++|.+|..+|++++|+.+|++++++.
T Consensus        74 P~------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~  141 (723)
T 4gyw_A           74 PT------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK  141 (723)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44      56677777777777777777777777777774      6667777777777777777777777777777754


Q ss_pred             h
Q 026948          228 E  228 (230)
Q Consensus       228 ~  228 (230)
                      +
T Consensus       142 P  142 (723)
T 4gyw_A          142 P  142 (723)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.66  E-value=1.1e-14  Score=119.82  Aligned_cols=146  Identities=13%  Similarity=0.120  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCc-cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 026948           72 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  150 (230)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  150 (230)
                      ..+.......+...++..+.+++...+.          .++ ....+.++..+|.+|...|++++|+.+|.+++++.+..
T Consensus       146 ~lg~~y~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  215 (378)
T 3q15_A          146 KVAEAYYHMKQTHVSMYHILQALDIYQN----------HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI  215 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHT----------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHh----------CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence            3333344444677888888888887765          122 34567788899999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++......++.++|.++..+|++++|+++|++++++.+...++. .+.++.++|.+|..+|++++|+.++++++++.+
T Consensus       216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99998999999999999999999999999999999988776644 489999999999999999999999999999764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.65  E-value=2.3e-15  Score=108.12  Aligned_cols=102  Identities=22%  Similarity=0.155  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      .....++.+|..++..|++++|+..|.+++.+.+.      ...+++++|.++...|++++|+.+|++++.+.      |
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p   86 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD------I   86 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------T
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------C
Confidence            36778899999999999999999999999997655      67888999999999999999999999999986      7


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+.+++++|.+|..+|++++|+.+|++++++.+
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            7788999999999999999999999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.65  E-value=1.4e-14  Score=103.66  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=109.0

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      ++....+.++..+|.++...|++++|+.++.+++++.+..++......++.++|.++...|++++|++++++++++.+..
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            45566777899999999999999999999999999999988888888999999999999999999999999999999888


Q ss_pred             CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       191 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++.+....++.++|.++...|++++|+.++++++++.+
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            88777888999999999999999999999999998754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.64  E-value=1.2e-14  Score=115.77  Aligned_cols=152  Identities=13%  Similarity=0.025  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 026948           67 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  146 (230)
Q Consensus        67 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  146 (230)
                      ...+...+.......+.+.++..+.+.+...+.          ...........+.+|..+...|++++|+.++++++++
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  144 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ  144 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC----------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            344555555555555677777777777765543          1222234445668999999999999999999999988


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          147 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       147 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~-~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .....+......+++++|.+|...|+|++|+.+|++++++.+..++.+... .+++++|.+|..+|+|++|+.+++++++
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          145 QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             CCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            776666666788999999999999999999999999999887766544333 7999999999999999999999999998


Q ss_pred             hhh
Q 026948          226 RLE  228 (230)
Q Consensus       226 ~~~  228 (230)
                      +.+
T Consensus       225 ~~~  227 (293)
T 2qfc_A          225 ISC  227 (293)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.63  E-value=6.7e-15  Score=107.06  Aligned_cols=106  Identities=15%  Similarity=0.176  Sum_probs=96.6

Q ss_pred             ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      .+...+..++.+|.+++..|++++|+.+|++++++.+.      ...++.++|.++...|+|++|+.+|++++++.    
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----   75 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD----   75 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence            34457778999999999999999999999999997665      57889999999999999999999999999995    


Q ss_pred             CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       192 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                        |....+|+++|.+|..+|++++|+.+|++++++.+.
T Consensus        76 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           76 --PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence              777899999999999999999999999999987654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.63  E-value=5.4e-15  Score=105.17  Aligned_cols=103  Identities=22%  Similarity=0.209  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ......++.+|..++..|++++|+..|++++...+.      ...++.++|.++...|+|++|+.+|++++.+.      
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------   82 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSYGALMD------   82 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            336678889999999999999999999999996554      67889999999999999999999999999986      


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      |..+.+++++|.+|..+|++++|+.+|++++++.+
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            77788999999999999999999999999998765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=7.2e-15  Score=102.07  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..+..+|..++..|++++|+.+|++++++.+.      ...++.++|.++...|++++|+.+|++++++.      |.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~   70 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------PN   70 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CC
Confidence            4557889999999999999999999999997655      57889999999999999999999999999985      77


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ...+++++|.++..+|++++|+.+|++++++.
T Consensus        71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           71 FVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            78999999999999999999999999999886

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.63  E-value=6e-15  Score=107.12  Aligned_cols=109  Identities=14%  Similarity=0.112  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------------PIEEKKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      ..+..+..+|..++..|+|++|+..|.+++.+.+....            .+....++.++|.++...|+|++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            46668889999999999999999999999998544211            444678899999999999999999999999


Q ss_pred             HHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       183 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++.+.      |..+.+|+++|.+|..+|++++|+.+|++++.+.+.
T Consensus        89 al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           89 VLKRE------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHhcC------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            99995      778999999999999999999999999999988654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.63  E-value=2e-14  Score=115.27  Aligned_cols=144  Identities=13%  Similarity=0.043  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +.......+.+.++..|.+++...+.          .++....+.++.++|.+|..+|++++|+.+|++++++....++.
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~  112 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHAN----------NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP  112 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            44444555666677777777777776          46667788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .....++.++|.+|.. |++++|+.+|++++++.+..++......++.++|.+|..+|+|++|+.+|++++.+.+
T Consensus       113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9899999999999999 9999999999999999999999999999999999999999999999999999999764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.62  E-value=1.5e-14  Score=115.21  Aligned_cols=150  Identities=14%  Similarity=0.050  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-QDLEKAFTEFKAALELA  147 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~  147 (230)
                      .+.+.+..+...++.+.++..|.+++...+.          .++....+.++.++|.+|... |++++|+.+|++++++.
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~----------~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~  148 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTH----------RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY  148 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            3444444444545778888999999988876          355556677888999999996 99999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      +..++......++.++|.++..+|+|++|+.+|++++++........ ....++.++|.++..+|++++|+.+|++++++
T Consensus       149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            98777777788899999999999999999999999998864332221 33457899999999999999999999999875


Q ss_pred             hh
Q 026948          227 LE  228 (230)
Q Consensus       227 ~~  228 (230)
                      .+
T Consensus       229 ~p  230 (292)
T 1qqe_A          229 DP  230 (292)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.62  E-value=2.2e-14  Score=114.13  Aligned_cols=151  Identities=13%  Similarity=0.056  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 026948           67 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEE-LLSRLKTGKNFLRNQDLEKAFTEFKAALE  145 (230)
Q Consensus        67 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~  145 (230)
                      ...+.+.+.......+.+.++..+.+.+...+.           .+.... ...+..+|..+...+++++|+.+++++++
T Consensus        75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~  143 (293)
T 3u3w_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-----------CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC-----------ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            344555555555555677777777777764433           222222 33444689999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          146 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       146 l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      +....++......++.++|.+|...|+|++|+.+|+++++..++. .+.+..+.+++++|.+|..+|+|++|+.++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             TCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            776666666677889999999999999999999999999988877 5566778899999999999999999999999999


Q ss_pred             Hhhh
Q 026948          225 SRLE  228 (230)
Q Consensus       225 ~~~~  228 (230)
                      ++.+
T Consensus       224 ~~~~  227 (293)
T 3u3w_A          224 EISC  227 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.60  E-value=1.5e-14  Score=110.25  Aligned_cols=95  Identities=11%  Similarity=0.021  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQIS  187 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~Ai~~~~~al~~~  187 (230)
                      ++..+|.++...|++++|+..+++++++.+.      ...++.++|.++...           |++++|+..|++++++.
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  114 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVARTPR------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN  114 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence            4555555555555555555555555554333      334444555555555           55555555555554443


Q ss_pred             HHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          188 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       188 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                            |....++.++|.++..+|++++|+..|+++++
T Consensus       115 ------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  146 (217)
T 2pl2_A          115 ------PRYAPLHLQRGLVYALLGERDKAEASLKQALA  146 (217)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence                  33444444555555555555555555554444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.59  E-value=1.8e-14  Score=109.15  Aligned_cols=132  Identities=14%  Similarity=0.169  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHH----------------HHHHHHhCCC
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLK----------------TGKNFLRNQD  132 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~  132 (230)
                      .+..++......++.+.++..+.+++...|.                ...+++.                +|.+|...|+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~   69 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID----------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRN   69 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC
Confidence            3444455555556677777777777776654                3334444                9999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH-----
Q 026948          133 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY-----  207 (230)
Q Consensus       133 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-----  207 (230)
                      +++|+..|++++++.+.      ...++.++|.++...|++++|+.+|++++++.      |..+.+++++|.+|     
T Consensus        70 ~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           70 YDKAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE------ADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHhH
Confidence            99999999999997665      67889999999999999999999999999885      55566666666555     


Q ss_pred             ------------------------------HHcCCHHHHHHHHHHHHHhhh
Q 026948          208 ------------------------------TELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       208 ------------------------------~~~g~~~~A~~~~~~al~~~~  228 (230)
                                                    ...|+|++|+.+|++++++.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence                                          344678899999999988765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.9e-13  Score=112.16  Aligned_cols=143  Identities=22%  Similarity=0.267  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH
Q 026948           76 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  155 (230)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  155 (230)
                      ......+.+.++..+.+++...+.          .++....+.++..+|.+|...|++++|+.++++++++.+..++...
T Consensus       196 ~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  265 (406)
T 3sf4_A          196 THYLLGNFRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV  265 (406)
T ss_dssp             HHHHHTBHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence            333334667777788888877665          3445556678889999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++.++|.++...|++++|+.++++++++....++.+....++..+|.+|..+|++++|+.+|++++++.+
T Consensus       266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999988888788889999999999999999999999999998754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.58  E-value=4.8e-14  Score=104.07  Aligned_cols=100  Identities=20%  Similarity=0.248  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ..++..+|.++...++++.|...+.+++.+.+.      ...++..+|.++...|++++|+++|++++++.      |..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------p~~  140 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGF  140 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------chh
Confidence            345667788888888888888888888876544      56788999999999999999999999999985      778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +.++.++|.+|..+|++++|+.+|++++++.+
T Consensus       141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence            89999999999999999999999999998765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.58  E-value=1.5e-13  Score=102.49  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-  194 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-  194 (230)
                      .+.++..+|.++...|++++|+.++++++.+....++.+....++.++|.++...|++++|++++++++.+.+..++.+ 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            5668889999999999999999999999999999999999999999999999999999999999999999998877544 


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ....++.++|.++..+|++++|..++++++++.+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.57  E-value=2.3e-13  Score=108.35  Aligned_cols=139  Identities=23%  Similarity=0.286  Sum_probs=121.1

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+.+.++..+.+++...+.          .++....+.++..+|.++...|++++|+.++++++++.+..++......++
T Consensus       197 ~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  266 (338)
T 3ro2_A          197 GNFRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC  266 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence            3566777777777776655          244555667888999999999999999999999999999988888889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ..+|.++...|++++|+.++++++.+....++.+....++..+|.+|...|++++|..++++++++.++
T Consensus       267 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999888887788889999999999999999999999999988753

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=5.3e-14  Score=106.08  Aligned_cols=133  Identities=13%  Similarity=0.004  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 026948           71 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  150 (230)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  150 (230)
                      ...+.......+.+.++..+.+++..                   ...+++.+|.+|...|++++|+.+|++++++.+. 
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~~~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-   69 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQDP-------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-   69 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSSSC-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcCC-------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence            33344444444566666666666411                   1347889999999999999999999999997544 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----------CcccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG----------EYSGSTEAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~----------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                           ...+++++|.++...|++++|+.+|+++++......          ..+....+++++|.+|..+|++++|+.+|
T Consensus        70 -----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  144 (213)
T 1hh8_A           70 -----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL  144 (213)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence                 568899999999999999999999999998764433          34567799999999999999999999999


Q ss_pred             HHHHHhhh
Q 026948          221 DKYISRLE  228 (230)
Q Consensus       221 ~~al~~~~  228 (230)
                      ++++++.+
T Consensus       145 ~~al~~~p  152 (213)
T 1hh8_A          145 ALATSMKS  152 (213)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHcCc
Confidence            99998754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.57  E-value=2.4e-13  Score=112.28  Aligned_cols=137  Identities=22%  Similarity=0.300  Sum_probs=121.3

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+++...+.          ..+....+.++..+|.+|...|++++|+.++++++.+.+..++......++.
T Consensus       238 ~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  307 (411)
T 4a1s_A          238 DFQAAIEHHQERLRIARE----------FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY  307 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            556677777777776654          2444556668889999999999999999999999999999888888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+|.++...|++++|+.++++++.+....++.+....++..+|.+|..+|++++|..+|++++++.+
T Consensus       308 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988888788888999999999999999999999999999764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.57  E-value=2.9e-13  Score=105.48  Aligned_cols=152  Identities=17%  Similarity=0.161  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+...+.......+.+.++..+.+++......        ...+......++..+|.+|...|++++|+.++.+++.+.+
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  116 (283)
T 3edt_B           45 MLNILALVYRDQNKYKEAAHLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE  116 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--------cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34444444444456777777777777665320        0023445677889999999999999999999999999887


Q ss_pred             hc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          149 NV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       149 ~~--~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      ..  .+.+....++.++|.++...|++++|++++++++++.+..  ++.+....++.++|.+|..+|++++|+.++++++
T Consensus       117 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            64  3457788999999999999999999999999999996665  3456778899999999999999999999999999


Q ss_pred             Hhhh
Q 026948          225 SRLE  228 (230)
Q Consensus       225 ~~~~  228 (230)
                      ++.+
T Consensus       197 ~~~~  200 (283)
T 3edt_B          197 TRAH  200 (283)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8743

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.57  E-value=4.9e-14  Score=107.68  Aligned_cols=132  Identities=15%  Similarity=0.145  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhcccc-ccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAP-VGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      .+...+.......+.+.++..|.+++...+ .                ....++.+|.++...|++++|+.++++++++.
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ----------------DSVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCC----------------CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            344556666666678888888998888776 3                22467779999999999999999999999854


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH-------HHHHHHHHHHHHcCCHHHHHHHH
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-------EAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~-------~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                      +.      ...++..+|.++...|++++|+.+|++++++.      |...       .++.++|.++...|++++|+.+|
T Consensus        73 p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~  140 (228)
T 4i17_A           73 YN------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY  140 (228)
T ss_dssp             CS------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cc------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence            44      78899999999999999999999999999886      4444       67999999999999999999999


Q ss_pred             HHHHHhhh
Q 026948          221 DKYISRLE  228 (230)
Q Consensus       221 ~~al~~~~  228 (230)
                      ++++++.+
T Consensus       141 ~~al~~~p  148 (228)
T 4i17_A          141 KHATDVTS  148 (228)
T ss_dssp             HHHTTSSC
T ss_pred             HHHHhcCC
Confidence            99997643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.56  E-value=5e-13  Score=109.71  Aligned_cols=136  Identities=18%  Similarity=0.242  Sum_probs=121.1

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+.++..+.+++.....          .++....+.++..+|.+|...|++++|+.++++++++.+..++......++.+
T Consensus       163 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  232 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTA----------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  232 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            66777777777766554          34555667788899999999999999999999999999998888888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +|.++...|++++|+.++++++.+....++.+....++.++|.+|...|++++|+.+|++++++.+
T Consensus       233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887777789999999999999999999999999998754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.56  E-value=5.6e-13  Score=110.11  Aligned_cols=136  Identities=17%  Similarity=0.249  Sum_probs=119.6

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+.++..+.+++...+.          .++....+.++..+|.+|...|++++|+.++++++++.+..++......++.+
T Consensus       199 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  268 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRD----------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN  268 (411)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            66666667776666544          24445567788899999999999999999999999999998888888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +|.++...|++++|+.+|++++.+....++......++..+|.+|...|++++|+.++++++.+.+
T Consensus       269 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988777777789999999999999999999999999998754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.55  E-value=3.4e-14  Score=126.22  Aligned_cols=132  Identities=17%  Similarity=0.213  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+.+.+..+...++.++++..|++++...|.                .+.+++++|.++..+|++++|+.+|++++++.+
T Consensus        45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P  108 (723)
T 4gyw_A           45 AHSNLASVLQQQGKLQEALMHYKEAIRISPT----------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP  108 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3445555566666888999999999988776                456899999999999999999999999999766


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .      ...++.++|.++..+|++++|+++|++++++.      |....++.++|.++..+|++++|.+.|++++++..
T Consensus       109 ~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          109 A------FADAHSNLASIHKDSGNIPEAIASYRTALKLK------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence            5      67899999999999999999999999999996      88899999999999999999999999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.55  E-value=8e-13  Score=105.21  Aligned_cols=136  Identities=18%  Similarity=0.244  Sum_probs=119.3

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+.++..+.+++.....          .++......++..+|.++...|++++|+.++++++++.+..++......++.+
T Consensus       159 ~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  228 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTA----------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  228 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            56666666666665544          24455567788899999999999999999999999999998888888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +|.++...|++++|+.++++++.+....++.+....++..+|.++...|++++|..++++++++.+
T Consensus       229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988877777789999999999999999999999999998754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.54  E-value=7.6e-14  Score=106.35  Aligned_cols=128  Identities=17%  Similarity=0.141  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHH
Q 026948           73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-----------QDLEKAFTEFK  141 (230)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------g~~~~A~~~~~  141 (230)
                      .+.......+.+.++..+.+++...|.                ...++..+|.++...           |++++|+..++
T Consensus        45 lg~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~  108 (217)
T 2pl2_A           45 LARTQLKLGLVNPALENGKTLVARTPR----------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK  108 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHH
Confidence            334444445677788888888887776                455788899999999           99999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          142 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       142 ~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      +++++.+.      ...++.++|.++...|++++|+..|++++++.       ..+.++.++|.+|..+|++++|+..|+
T Consensus       109 ~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~  175 (217)
T 2pl2_A          109 DAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYA  175 (217)
T ss_dssp             HHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99997655      66788999999999999999999999998883       356789999999999999999999999


Q ss_pred             HHHHhhhc
Q 026948          222 KYISRLES  229 (230)
Q Consensus       222 ~al~~~~~  229 (230)
                      ++++..+.
T Consensus       176 ~al~~~P~  183 (217)
T 2pl2_A          176 KALEQAPK  183 (217)
T ss_dssp             HHHHHSTT
T ss_pred             HHHHhCCC
Confidence            99987653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.54  E-value=1.4e-13  Score=96.46  Aligned_cols=102  Identities=11%  Similarity=0.069  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..+..+|..++..|++++|+.+|.+++.+.+.      ...++.++|.++...|++++|+.++++++.+.      |.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~   75 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQ   75 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------ch
Confidence            3557889999999999999999999999997655      56789999999999999999999999999985      67


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ...+++++|.++..+|++++|+.+|++++.+.++
T Consensus        76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            7899999999999999999999999999987654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.54  E-value=5.1e-14  Score=97.56  Aligned_cols=99  Identities=17%  Similarity=0.148  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .++.+|..+...|++++|+..++++++..+.      ...+++.+|.++...|++++|+.+|++++++.      |....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~   86 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIA   86 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Confidence            4678899999999999999999999997665      67899999999999999999999999999996      77889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++.++|.+|...|++++|+.+|+++++..+.
T Consensus        87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           87 VHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999987643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=2.2e-13  Score=100.48  Aligned_cols=131  Identities=19%  Similarity=0.200  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 026948           71 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  150 (230)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  150 (230)
                      .+.+......++.+.++..|++++...|.                ...++..+|.+|...|++++|+..+.+++...+. 
T Consensus         9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-   71 (184)
T 3vtx_A            9 MDIGDKKRTKGDFDGAIRAYKKVLKADPN----------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-   71 (184)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-
Confidence            34455556666888899999999988776                4567899999999999999999999999986554 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                           ...++..+|.++...+++++|++.+++++.+.      |....++..+|.+|..+|++++|+.+|++++++.+.
T Consensus        72 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~  139 (184)
T 3vtx_A           72 -----SAEAYYILGSANFMIDEKQAAIDALQRAIALN------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG  139 (184)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             -----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence                 56788999999999999999999999999885      777899999999999999999999999999987653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.53  E-value=5.2e-13  Score=105.67  Aligned_cols=146  Identities=14%  Similarity=0.141  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--C
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--K  151 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~  151 (230)
                      +.......+.+.++..+.+++......        ...+......++..+|.+|...|++++|+.++++++.+.+..  +
T Consensus        34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           34 VIQYASQGRYEVAVPLCKQALEDLEKT--------SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHH--------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            333444445566666666666654320        001334466788899999999999999999999999998776  6


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +.+....++.++|.++...|++++|+++|++++++.+..  ++.+....++.++|.++...|++++|+.+|++++++.
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            677789999999999999999999999999999998776  6667788999999999999999999999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.52  E-value=3.8e-13  Score=104.82  Aligned_cols=114  Identities=16%  Similarity=0.169  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-  190 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~-  190 (230)
                      ...+.++..+|.+|...|++++|+.++++++++....  ++.+....++.++|.++...|++++|+++|++++++.++. 
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            4567788899999999999999999999999998776  6778889999999999999999999999999999997765 


Q ss_pred             -CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          191 -GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       191 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                       ++.+....++.++|.+|...|++++|+.+|++++++.
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             3447788999999999999999999999999999873

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.52  E-value=1.8e-13  Score=95.52  Aligned_cols=116  Identities=12%  Similarity=0.141  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 026948           64 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA  143 (230)
Q Consensus        64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  143 (230)
                      +...+.+.+.+......++++.++..|.+++...|.                ...++.++|.+|..+|++++|+..++++
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----------------NAILYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence            334456777788888888999999999999988876                4568889999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 026948          144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  207 (230)
Q Consensus       144 l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  207 (230)
                      +++.+.      ...+++++|.++..+|++++|+++|++++++.      |....++.+++.++
T Consensus        74 l~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~------P~~~~a~~~l~~~l  125 (126)
T 4gco_A           74 IRLDSK------FIKGYIRKAACLVAMREWSKAQRAYEDALQVD------PSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHC
T ss_pred             HHhhhh------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------cCCHHHHHHHHHhc
Confidence            997655      67889999999999999999999999999996      88889999998874

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.51  E-value=2.3e-14  Score=103.08  Aligned_cols=96  Identities=13%  Similarity=0.145  Sum_probs=84.1

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  201 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  201 (230)
                      .+|.++...|++++|+..+++++.      ..+.....++++|.+|...|+|++|+++|++++++.      |..+.+|.
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------p~~~~a~~   69 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------ERDPKAHR   69 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence            368888999999999999999988      445588889999999999999999999999999996      78899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          202 AIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       202 ~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++|.+|..+|++++|+.+|++++++.++
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~   97 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPT   97 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999997654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.51  E-value=1.4e-12  Score=103.26  Aligned_cols=140  Identities=19%  Similarity=0.248  Sum_probs=116.1

Q ss_pred             HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHH
Q 026948           80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEK  157 (230)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~  157 (230)
                      ..+.+.++..+.+++......        ...+......++..+|.+|...|++++|+.++++++++....  ++.+...
T Consensus        82 ~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (311)
T 3nf1_A           82 QNKYKDAANLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA  153 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            335666777777777664320        002334567788899999999999999999999999988765  6677788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .++.++|.++...|++++|++++++++++.++.  ++.+....++..+|.+|...|++++|+.++++++++.
T Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997765  4457778899999999999999999999999999864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=6e-14  Score=116.01  Aligned_cols=120  Identities=8%  Similarity=0.024  Sum_probs=87.5

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKA  159 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~~~~  159 (230)
                      .+.+.++..+.+++...|.                ...+++.+|.++...|+ +++|+.+|++++++.++      ...+
T Consensus       111 g~~~~Al~~~~~al~l~P~----------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a  168 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAA----------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQV  168 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred             CChHHHHHHHHHHHHhCcc----------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHH
Confidence            3566677777777776665                44567777777777775 77777777777776555      5667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++++|.++...|++++|+.+|++++++.      |....+|+++|.++..+|++++|+.+|++++++.+
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P  231 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV  231 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            7777777777777777777777777774      66677777777777777777777777777776543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.50  E-value=2.3e-13  Score=103.88  Aligned_cols=134  Identities=7%  Similarity=0.026  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-  152 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-  152 (230)
                      +.......+.+.++..+.+++...|.                ...++..+|.+|..+|++++|+.++++++++.+.... 
T Consensus        49 ~~~~~~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           49 GVCADNIKKYKEAADYFDIAIKKNYN----------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCS----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHhhcHHHHHHHHHHHHHhCcc----------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            34444444677788888888876665                5668899999999999999999999999998765211 


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc--HHHHHHHHHHHHHHcCCH-----------------
Q 026948          153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDL-----------------  213 (230)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~--~~~~~~~lg~~y~~~g~~-----------------  213 (230)
                      ......++.++|.++...|++++|+++|++++++.      |.  .+.++.++|.+|...|+.                 
T Consensus       113 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~  186 (228)
T 4i17_A          113 EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT------SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYA  186 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC------CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            11234679999999999999999999999998874      77  789999999999999998                 


Q ss_pred             ----------HHHHHHHHHHHHhhhc
Q 026948          214 ----------ERAARFYDKYISRLES  229 (230)
Q Consensus       214 ----------~~A~~~~~~al~~~~~  229 (230)
                                ++|+.+|++++++.++
T Consensus       187 ~~~~~~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          187 SEKAKADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence                      9999999999987654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=5.5e-13  Score=100.88  Aligned_cols=100  Identities=16%  Similarity=0.199  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG----------------LGASLQRQGKYREAIKYHS  181 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~----------------lg~~~~~~~~~~~Ai~~~~  181 (230)
                      ..++..|..+...|++++|+.+|++++++.+.      ...+++.                +|.++...|++++|+.+|+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            36778999999999999999999999996554      6677777                9999999999999999999


Q ss_pred             HHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       182 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +++++.      |..+.++.++|.+|...|++++|+.+|++++++.+.
T Consensus        79 ~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~  120 (208)
T 3urz_A           79 ELLQKA------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD  120 (208)
T ss_dssp             HHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            999986      778999999999999999999999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.49  E-value=6.2e-13  Score=90.04  Aligned_cols=101  Identities=16%  Similarity=0.259  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..++.+|..+...|++++|+..+++++...+.      ...++.++|.++...|++++|+.+++++++..      |.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~   70 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PD   70 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------cc
Confidence            3557889999999999999999999999996554      46789999999999999999999999999885      66


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++.++|.++...|++++|..+|+++++..+
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            788999999999999999999999999998754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.49  E-value=4.5e-13  Score=100.34  Aligned_cols=111  Identities=21%  Similarity=0.250  Sum_probs=95.4

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------IEEKKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~----------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      ....+..+..+|..++..|+|++|+.+|.+++++.+...+.          .....++.++|.++...|+|++|+.++++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34466678899999999999999999999999976653311          11247899999999999999999999999


Q ss_pred             HHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       183 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++++.      |....+++++|.+|..+|++++|+.+|++++.+.+.
T Consensus       114 al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A          114 VLKID------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhC------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            99985      677899999999999999999999999999987643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.49  E-value=8.4e-13  Score=91.06  Aligned_cols=107  Identities=18%  Similarity=0.360  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-Ccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYS  194 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~-~~~  194 (230)
                      .+..++.+|..+...|++++|+.++.++++..+.      ...++.++|.++...|++++|+.++++++....... +.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            4557889999999999999999999999997544      467889999999999999999999999999875432 222


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ....++.++|.++...|++++|+.+|+++++..+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            2378999999999999999999999999998653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=1e-12  Score=90.50  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=93.8

Q ss_pred             ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      .+......+..+|..+...|++++|+.++++++...+.      ...++..+|.++...|++++|+.++++++...    
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----   76 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID----   76 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----
Confidence            34556778899999999999999999999999986544      46789999999999999999999999999874    


Q ss_pred             CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       192 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                        |....++..+|.++...|++++|+.+|++++...+
T Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           77 --PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             --ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence              66688999999999999999999999999998764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.49  E-value=2.9e-13  Score=110.02  Aligned_cols=111  Identities=13%  Similarity=0.168  Sum_probs=97.5

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---------DPIEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---------~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      ....+.++..+|..++..|++++|+.+|++++++.+...         ..+....++.++|.++...|+|++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445677888999999999999999999999999887642         12333688999999999999999999999999


Q ss_pred             HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +++.      |....+++++|.+|..+|++++|+.+|++++++.+.
T Consensus       223 l~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  262 (336)
T 1p5q_A          223 LELD------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  262 (336)
T ss_dssp             HHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            9985      778899999999999999999999999999987653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.48  E-value=5.2e-13  Score=92.53  Aligned_cols=105  Identities=14%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +++.+|..++..|++++|+..|+++++..+.   ......+++.+|.++...|+|++|+.+|+++++..   ++.+..+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHH
Confidence            4678899999999999999999999986554   22244789999999999999999999999998875   12222378


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +++.+|.++..+|++++|+.+|+++++..+.
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999987653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.48  E-value=8.6e-13  Score=95.09  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ...+..+..+|..++..|++++|+.+|.++++..+.      ...++.++|.++...|++++|+.++++++++.      
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------   77 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD------   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            346667889999999999999999999999986554      46788999999999999999999999999885      


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      |....++.++|.++..+|++++|+.+|++++...+.
T Consensus        78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  113 (166)
T 1a17_A           78 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  113 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            667889999999999999999999999999987643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.48  E-value=2.1e-12  Score=99.43  Aligned_cols=133  Identities=15%  Similarity=0.122  Sum_probs=93.6

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-----------
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----------  149 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----------  149 (230)
                      .+.+.++..+.+++...+..         ..+......++..+|.++...|++++|+.++++++++.+.           
T Consensus        52 ~~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  122 (258)
T 3uq3_A           52 GEYETAISTLNDAVEQGREM---------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE  122 (258)
T ss_dssp             TCHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCccc---------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHH
Confidence            35566666666666665541         0123333677778888888888888888888888874322           


Q ss_pred             ---------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948          150 ---------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       150 ---------~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                               ....+....++..+|.++...|++++|+.+|++++...      |....++.++|.++...|++++|+.++
T Consensus       123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA------PEDARGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                     11456677778888888888888888888888887774      555677888888888888888888888


Q ss_pred             HHHHHhhh
Q 026948          221 DKYISRLE  228 (230)
Q Consensus       221 ~~al~~~~  228 (230)
                      +++++..+
T Consensus       197 ~~al~~~~  204 (258)
T 3uq3_A          197 NKAIEKDP  204 (258)
T ss_dssp             HHHHHHCT
T ss_pred             HHHHHhCH
Confidence            88877654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.48  E-value=2.9e-13  Score=99.36  Aligned_cols=102  Identities=13%  Similarity=0.147  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHHhCC
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS-LQRQGKY--REAIKYHSMVLQISEREGE  192 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~-~~~~~~~--~~Ai~~~~~al~~~~~~~~  192 (230)
                      ...++..+|.+|...|++++|+.+|.+++++.+.      ...++.++|.+ +...|++  ++|+.+|+++++..     
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-----  111 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALALD-----  111 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-----
Confidence            3457889999999999999999999999998765      46788999999 8899999  99999999999985     


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                       |....++.++|.+|...|++++|+.+|+++++..+.
T Consensus       112 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          112 -SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             -CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence             667889999999999999999999999999987653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.47  E-value=2.6e-13  Score=94.08  Aligned_cols=103  Identities=16%  Similarity=0.214  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      .....+++.+|..+...|++++|+.+++++++..+.      ...++.++|.++...|++++|+.+++++++..      
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------   80 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE------   80 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC------
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------
Confidence            345668999999999999999999999999985443      47789999999999999999999999999885      


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +....++.++|.++...|++++|+.+|+++++..+
T Consensus        81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            66788999999999999999999999999998754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.47  E-value=1.2e-12  Score=101.92  Aligned_cols=124  Identities=14%  Similarity=0.038  Sum_probs=103.3

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+++...+            .++.....++..+|.++...|++++|+.+|++++++.+.      ...++.
T Consensus        20 ~~~~A~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~   81 (275)
T 1xnf_A           20 QQEVILARMEQILASRA------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFN   81 (275)
T ss_dssp             HHHHHHHHHHHHHTSSC------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHH
T ss_pred             hHHHHHHHHHHHHhccc------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHH
Confidence            44556666666665532            123446778899999999999999999999999997544      567899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|.++...|++++|+++|++++++.      |....++.++|.+|...|++++|+.+|+++++..+.
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLELD------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcC------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999985      666789999999999999999999999999987543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.46  E-value=1.1e-12  Score=102.39  Aligned_cols=143  Identities=15%  Similarity=0.121  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      +.+...+.......+.+.++..|.+.+...|.           .+  ....+++.+|.+|+..|++++|+..|+++++..
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-----------~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-----------HE--WAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-----------ST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----------Cc--chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            34555566666667888899999999887765           11  125578999999999999999999999999976


Q ss_pred             HhcCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhCCcccHHHHH--------------HHHHH
Q 026948          148 QNVKDPIEEKKAARGLGASLQR--------QGKYREAIKYHSMVLQISEREGEYSGSTEAY--------------GAIAD  205 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~--------~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~--------------~~lg~  205 (230)
                      +..   +....+++.+|.++..        .|++++|+..|+++++...   +.+....++              +.+|.
T Consensus        83 p~~---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~~~~~~~~~~~~~~~la~  156 (261)
T 3qky_A           83 QID---PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP---NHELVDDATQKIRELRAKLARKQYEAAR  156 (261)
T ss_dssp             TTC---TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT---TCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC---chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc---CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            542   2356889999999999        9999999999999988752   222333344              89999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          206 CYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       206 ~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +|...|++++|+..|+++++..+.
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHccCHHHHHHHHHHHHHHCCC
Confidence            999999999999999999987653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.46  E-value=4.4e-12  Score=107.85  Aligned_cols=147  Identities=10%  Similarity=-0.049  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--
Q 026948           73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--  150 (230)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--  150 (230)
                      ....+..+++++.++..+.+++......        ...+....+.++.++|.+|..+|+|++|+.++++++++..+.  
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~--------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPV--------FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTT--------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence            3344444455667777777777665431        123455677788999999999999999999999999998863  


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+++..+..+++||.+|..+|+|++|+.+|++|+++.+..  .+.|.......+++.++.+++.|++|...|.++.+.+
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999999999999998884  5778889999999999999999999999999997754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.45  E-value=4.1e-12  Score=92.68  Aligned_cols=120  Identities=22%  Similarity=0.225  Sum_probs=90.6

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|..+++++++..+.      ...++.
T Consensus        57 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  114 (186)
T 3as5_A           57 AVDRGTELLERSLADAPD----------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRF  114 (186)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHH
Confidence            455555666666555443                2346677888888888888888888888876443      456778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|.++...|++++|+++++++++..      +....++..+|.++...|++++|..+++++++..++
T Consensus       115 ~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          115 RLGVALDNLGRFDEAIDSFKIALGLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            88888888888888888888888774      555778888888888888888888888888877653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.45  E-value=2.6e-12  Score=98.87  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ....++..+|.++...|++++|+.+++++++..+.      ...++.++|.++...|++++|+.+|+++++..      |
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~  204 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------P  204 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------H
Confidence            35667889999999999999999999999997654      46789999999999999999999999999885      6


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..+.++..+|.++..+|++++|..+|++++++.
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            678999999999999999999999999999987

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=7.9e-13  Score=93.46  Aligned_cols=105  Identities=19%  Similarity=0.240  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+..++.+|..++..|++++|+.+|++++++.+   +......++.++|.++...|++++|+.++++++++.      |.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~   97 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------GG   97 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------SC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------cc
Confidence            456788999999999999999999999998432   333347889999999999999999999999999885      66


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ...+++++|.++..+|++++|+.+|++++.+.+.
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            6899999999999999999999999999987643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.45  E-value=9.4e-13  Score=111.36  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=96.8

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      ....+..+..+|..++..|+|++|+.+|.+++++.+....         ......++.++|.++..+|+|++|+.+|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3456778889999999999999999999999998877421         2334688999999999999999999999999


Q ss_pred             HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +++.      |....+|+++|.+|..+|++++|+.+|++++++.+
T Consensus       344 l~~~------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P  382 (457)
T 1kt0_A          344 LGLD------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  382 (457)
T ss_dssp             HHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HhcC------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            9986      77889999999999999999999999999998754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.45  E-value=3.2e-13  Score=92.65  Aligned_cols=92  Identities=16%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948          129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  208 (230)
Q Consensus       129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  208 (230)
                      .+|++++|+.+|++++++.   .+.+....++.++|.++...|+|++|+.+|++++++.      |..+.++.++|.++.
T Consensus         2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------PNHQALRVFYAMVLY   72 (117)
T ss_dssp             -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHH
Confidence            3689999999999999841   1145588999999999999999999999999999985      777899999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhhhc
Q 026948          209 ELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       209 ~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|++++|+.++++++...+.
T Consensus        73 ~~g~~~~A~~~~~~al~~~p~   93 (117)
T 3k9i_A           73 NLGRYEQGVELLLKIIAETSD   93 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999987643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.45  E-value=1.6e-12  Score=105.65  Aligned_cols=148  Identities=20%  Similarity=0.193  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 026948           67 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  146 (230)
Q Consensus        67 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  146 (230)
                      ...+...+..+....+.+.++..|.+++...+....... +.........+.+++++|.+|..+|++++|+.+|++++++
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345566667777777889999999999998876321111 0000112233568889999999999999999999999997


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 026948          147 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYIS  225 (230)
Q Consensus       147 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~  225 (230)
                      .+.      ...+++++|.++...|++++|+.+|++++++.      |....++.++|.++..+|++++| ...|++++.
T Consensus       226 ~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          226 DSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY------PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655      67899999999999999999999999999995      77789999999999999999999 567888876


Q ss_pred             hh
Q 026948          226 RL  227 (230)
Q Consensus       226 ~~  227 (230)
                      .+
T Consensus       294 ~~  295 (336)
T 1p5q_A          294 RL  295 (336)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.44  E-value=2.6e-12  Score=92.57  Aligned_cols=132  Identities=18%  Similarity=0.167  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+...+.......+.+.++..+.+++...+.                ...++..+|.++...|++++|+.++.+++++.+
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   78 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK   78 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            4444555555555777788888888877665                345788999999999999999999999999755


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY--GAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~--~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .      ...++.++|.++...|++++|+.+|++++.+.      |....++  ..++..+...|++++|+..++++..+
T Consensus        79 ~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           79 K------YIKGYYRRAASNMALGKFRAALRDYETVVKVK------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            4      56789999999999999999999999999885      4445555  45555588999999999999998877


Q ss_pred             hh
Q 026948          227 LE  228 (230)
Q Consensus       227 ~~  228 (230)
                      ++
T Consensus       147 ~~  148 (166)
T 1a17_A          147 VD  148 (166)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.44  E-value=3e-12  Score=88.35  Aligned_cols=120  Identities=27%  Similarity=0.446  Sum_probs=98.2

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+.+...+.                ....+..+|.++...|++++|+.++++++...+.      ...++.
T Consensus        16 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~   73 (136)
T 2fo7_A           16 DYDEAIEYYQKALELDPR----------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWY   73 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCc----------------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHH
Confidence            445555556666554443                2346778999999999999999999999986443      456788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|.++...|++++|+.++++++...      +....++..+|.++...|++++|..++++++...+.
T Consensus        74 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           74 NLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999998874      556788999999999999999999999999987653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.44  E-value=1.8e-12  Score=106.73  Aligned_cols=109  Identities=16%  Similarity=0.157  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVL  184 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----------~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al  184 (230)
                      ..+..+..+|..++..|++++|+.+|++++++.+...          ..+....++.++|.++..+|+|++|++++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4556788999999999999999999999999765531          445578899999999999999999999999999


Q ss_pred             HHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          185 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++.      |..+.+++++|.+|..+|++++|+.+|++++++.+.
T Consensus       301 ~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          301 EID------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             TTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhC------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            875      778899999999999999999999999999987653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=3e-12  Score=93.42  Aligned_cols=129  Identities=13%  Similarity=0.111  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC
Q 026948           72 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  151 (230)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  151 (230)
                      ..+.......+.+.++..+.+++...+.                ...++..+|.++...|++++|+.+++++++..+.  
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--   74 (186)
T 3as5_A           13 DKGISHAKAGRYSQAVMLLEQVYDADAF----------------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--   74 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTCCTTSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcc----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Confidence            3344444555677788888888876654                2457889999999999999999999999986443  


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                          ...++..+|.++...|++++|++++++++...      |....++..+|.++...|++++|+.+++++++..+
T Consensus        75 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  141 (186)
T 3as5_A           75 ----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP  141 (186)
T ss_dssp             ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence                46788999999999999999999999999885      56678999999999999999999999999998654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.43  E-value=2.3e-11  Score=99.36  Aligned_cols=113  Identities=12%  Similarity=-0.004  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc--
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY--  193 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~--  193 (230)
                      ...++..+|.++...|++++|..++.+++.+.+..++......++.++|.++...|++++|++++++++.+.+..++.  
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            444566677777777777777777777777777766666666667777777777777777777777777776655443  


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +....++.++|.++...|++++|..++++++.+.+
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            44556667777777777777777777777776543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.43  E-value=3.5e-12  Score=87.05  Aligned_cols=101  Identities=27%  Similarity=0.473  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....++.+|.++...|++++|+..+.++++..+.      ...++..+|.++...|++++|+.++++++...      +.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~   75 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PN   75 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------Cc
Confidence            3557889999999999999999999999986443      45688999999999999999999999998874      55


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++..+|.++...|++++|..+|+++++..+
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            678999999999999999999999999998754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.42  E-value=4.5e-13  Score=89.96  Aligned_cols=99  Identities=17%  Similarity=0.177  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc--H
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--S  196 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~--~  196 (230)
                      .+..+|.++...|++++|+.++++++++.+.      ...++.++|.++...|++++|+.+|+++++..      +.  .
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------~~~~~   75 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVI------EDEYN   75 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS------CCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------cccch
Confidence            5677899999999999999999999997544      45788999999999999999999999999875      55  7


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhc
Q 026948          197 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES  229 (230)
Q Consensus       197 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~  229 (230)
                      ..++.++|.++..+ |++++|+.++++++...+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            88999999999999 9999999999999887653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.41  E-value=9.8e-12  Score=105.71  Aligned_cols=110  Identities=13%  Similarity=-0.012  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcc
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYS  194 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~  194 (230)
                      .....+..+..+|+|++|+..+++++++..+.  .+++....++.+||.+|..+|+|++|+.++++++++.++.  .+.|
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            34455666889999999999999999998863  4677889999999999999999999999999999998874  5678


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+..+++||.+|..+|+|++|...|++|+++.+
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.41  E-value=6.4e-12  Score=94.67  Aligned_cols=122  Identities=21%  Similarity=0.195  Sum_probs=100.2

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-QDLEKAFTEFKAALELAQNVKDPIEEKKA  159 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~~~~~~~~~~~  159 (230)
                      .+.+.++..+.+++...+.                ...++..+|.++... |++++|+.+++++++    .+..+....+
T Consensus        56 ~~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~  115 (225)
T 2vq2_A           56 KVNDKAQESFRQALSIKPD----------------SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIA  115 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHH
T ss_pred             CChHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHH
Confidence            3566677777777766554                244678899999999 999999999999987    2233335678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +..+|.++...|++++|+.+++++++..      |....++..+|.++...|++++|+.++++++...+
T Consensus       116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          116 NLNKGICSAKQGQFGLAEAYLKRSLAAQ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            8999999999999999999999998875      66688999999999999999999999999998765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.41  E-value=3.2e-12  Score=97.68  Aligned_cols=125  Identities=15%  Similarity=0.186  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH
Q 026948           76 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  155 (230)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~  155 (230)
                      ......+.+.++..+.+++...+.                ...++..+|.++...|++++|+.+++++++..+.      
T Consensus        66 ~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------  123 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKALELDSS----------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------  123 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCc----------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------
Confidence            333334556666666666665543                3446777888888888888888888888876544      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++..+|.++...|++++|+.+++++++..      +....++..+|.++...|++++|+.+++++++..+
T Consensus       124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  190 (243)
T 2q7f_A          124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP  190 (243)
T ss_dssp             SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            35567788888888888888888888888774      55667888888888888888888888888887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.40  E-value=2.1e-12  Score=103.05  Aligned_cols=106  Identities=21%  Similarity=0.287  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~---~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ..++..+|.++...|++++|+.++++++++.+..++.   +....++.++|.++...|++++|+.+|++++++.      
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------  266 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI------  266 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC------
Confidence            4567889999999999999999999999987654443   3345688899999999999999999999998885      


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      |....++.++|.++..+|++++|..+|++++++.+
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence            55678899999999999999999999999887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.39  E-value=5.5e-12  Score=102.67  Aligned_cols=135  Identities=14%  Similarity=0.168  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC
Q 026948           72 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  151 (230)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  151 (230)
                      ..+.......+.+.++..+.+++...|.                ...++..+|.+|...|++++|+.++++++++.+...
T Consensus       104 ~lg~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A          104 FLGITQAENENEQAAIVALQRCLELQPN----------------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccch
Confidence            3334444444667777777777776654                344677888888888888888888888887655421


Q ss_pred             ChHH----------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          152 DPIE----------------------------------------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       152 ~~~~----------------------------------------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      ....                                        ...++.++|.++...|++++|+++|++++++.    
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----  243 (365)
T 4eqf_A          168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR----  243 (365)
T ss_dssp             CC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred             HHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence            1110                                        35678888999999999999999999988875    


Q ss_pred             CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       192 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                        |..+.++.++|.+|...|++++|+.+|++++++.+
T Consensus       244 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  278 (365)
T 4eqf_A          244 --PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP  278 (365)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence              66678888899999999999999999988887654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=7.6e-12  Score=86.55  Aligned_cols=121  Identities=10%  Similarity=0.048  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      +.+...+.......+.+.++..|.+++...|.                ...++..+|.++...|++++|+.++++++++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   68 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD   68 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34555566666667888899999999988776                34578899999999999999999999999976


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  210 (230)
                      +.      ...+++++|.++...|++++|+.+|++++++.....+.|....++..++.+...+
T Consensus        69 p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           69 PN------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             CC------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            55      5788999999999999999999999999999877666677888888888887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.39  E-value=7.7e-13  Score=103.10  Aligned_cols=98  Identities=13%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ++..+|.+|...|++++|+.+++++++ .+  .+......++..+|.++...|++++|+++|++++++.      |....
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~~~  109 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD------TTRLD  109 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------cccHH
Confidence            344555555555555555555555554 11  1222234445555555555555555555555555543      33445


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      ++.++|.+|...|++++|+.+|+++++
T Consensus       110 ~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A          110 MYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            555555555555555555555555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.39  E-value=1.5e-11  Score=103.02  Aligned_cols=105  Identities=10%  Similarity=0.038  Sum_probs=94.0

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHH
Q 026948          124 GKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEA  199 (230)
Q Consensus       124 g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~  199 (230)
                      +......|+|++|+..+++++++..+.  .+++....++.++|.+|..+|+|++|+.++++++++.++.  .+.|..+..
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  384 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM  384 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            333445789999999999999998763  4678889999999999999999999999999999998884  567889999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +++||.+|..+|+|++|...|++|+++.+
T Consensus       385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          385 WLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999874

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=3.7e-12  Score=108.13  Aligned_cols=127  Identities=7%  Similarity=-0.060  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHH
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---------QDLEKAFTEFKAAL  144 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al  144 (230)
                      +..+....+.+.++..|.+++...|.                 ..++..+|.++...         |++++|+.+|++++
T Consensus       144 g~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al  206 (474)
T 4abn_A          144 GEVYWKKGDVTSAHTCFSGALTHCKN-----------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV  206 (474)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTCCC-----------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-----------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence            33344444666777777777765442                 25788999999999         99999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhCCcc---cHHHHHHHHHHHHHHcCCH
Q 026948          145 ELAQNVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDL  213 (230)
Q Consensus       145 ~l~~~~~~~~~~~~~~~~lg~~~~~~--------~~~~~Ai~~~~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~  213 (230)
                      ++.+.      ...+++++|.++...        |++++|+.+|++++++.      |   ..+.+++++|.+|..+|++
T Consensus       207 ~~~p~------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~lg~~~~~~g~~  274 (474)
T 4abn_A          207 QMDVL------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD------RKASSNPDLHLNRATLHKYEESY  274 (474)
T ss_dssp             HHCTT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC------GGGGGCHHHHHHHHHHHHHTTCH
T ss_pred             HhCCC------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHHHcCCH
Confidence            97655      577899999999999        99999999999999985      6   7889999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 026948          214 ERAARFYDKYISRLES  229 (230)
Q Consensus       214 ~~A~~~~~~al~~~~~  229 (230)
                      ++|+.+|++++++.+.
T Consensus       275 ~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          275 GEALEGFSQAAALDPA  290 (474)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999987543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.38  E-value=5.8e-12  Score=96.26  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=102.2

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|+.+++++++..+.      ...++.
T Consensus       106 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  163 (243)
T 2q7f_A          106 MYKEAKDMFEKALRAGME----------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARF  163 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCC----------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHH
Confidence            556666677777766554                2346788999999999999999999999986554      456889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|.++...|++++|+++++++++..      +....++..+|.+|...|++++|..+|++++++.++
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          164 QFGMCLANEGMLDEALSQFAAVTEQD------PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            99999999999999999999999885      566789999999999999999999999999987654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.38  E-value=9e-12  Score=101.37  Aligned_cols=137  Identities=13%  Similarity=0.083  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +...+.......+.+.++..+.+++...|.                ...+++.+|.+|...|++++|+.+|++++++.+.
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  131 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG----------------DAEAWQFLGITQAENENEQAAIVALQRCLELQPN  131 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            444455555666777888888888877765                3557889999999999999999999999997554


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc------------------------------------
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY------------------------------------  193 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~------------------------------------  193 (230)
                            ...++.++|.++...|++++|+.+|++++++.......                                    
T Consensus       132 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  205 (365)
T 4eqf_A          132 ------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH  205 (365)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence                  57789999999999999999999999999876542211                                    


Q ss_pred             --cc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          194 --SG--STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       194 --~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                        |.  .+.++.++|.+|...|++++|+.+|+++++..+
T Consensus       206 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  244 (365)
T 4eqf_A          206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP  244 (365)
T ss_dssp             HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence              11  567899999999999999999999999988754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.38  E-value=3e-12  Score=101.38  Aligned_cols=100  Identities=11%  Similarity=0.069  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      +..+..+|..++..|++++|+.+|.++++..+.      ...++.++|.++...|++++|+.++++++++.      |..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC
Confidence            346788999999999999999999999997554      57889999999999999999999999999874      777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+++++|.+|..+|++++|+.+|++++++.+
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            89999999999999999999999999998765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.38  E-value=2.9e-11  Score=98.76  Aligned_cols=140  Identities=13%  Similarity=0.059  Sum_probs=115.4

Q ss_pred             HHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HH
Q 026948           78 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IE  155 (230)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~--~~  155 (230)
                      ...++.+.+...+.+++...+.          .++....+.+...+|.++...|++++|+.++++++++.+..++.  +.
T Consensus        64 ~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           64 HCKGELTRSLALMQQTEQMARQ----------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence            3334566667777777777665          24445566778899999999999999999999999999876665  56


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++.++|.++...|++++|..++++++.+.+..++. ....++.++|.++...|++++|..++++++.+..
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            77889999999999999999999999999987654432 3567899999999999999999999999988753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.37  E-value=9.5e-13  Score=108.82  Aligned_cols=132  Identities=8%  Similarity=0.030  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHH-HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           70 VNEQLRQINAALR-RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        70 l~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      ....+..+....+ .+.++..+.+++...|.                ...+++++|.++...|++++|+.+|++++++.+
T Consensus       134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP  197 (382)
T 2h6f_A          134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA  197 (382)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            3344444444455 78888889999988776                566899999999999999999999999999776


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH-cCCHHHH-----HHHHHH
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-LGDLERA-----ARFYDK  222 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A-----~~~~~~  222 (230)
                      +      ...+++++|.++...|++++|+.+|++++++.      |....+|+++|.++.. .|.+++|     +.+|++
T Consensus       198 ~------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~  265 (382)
T 2h6f_A          198 K------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE  265 (382)
T ss_dssp             T------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred             c------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence            6      78899999999999999999999999999996      8889999999999999 5554888     599999


Q ss_pred             HHHhhhc
Q 026948          223 YISRLES  229 (230)
Q Consensus       223 al~~~~~  229 (230)
                      ++.+.+.
T Consensus       266 Al~l~P~  272 (382)
T 2h6f_A          266 MIKLVPH  272 (382)
T ss_dssp             HHHHSTT
T ss_pred             HHHHCCC
Confidence            9987653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.37  E-value=3.2e-11  Score=83.95  Aligned_cols=103  Identities=12%  Similarity=0.125  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      ...+.+.......+++.++..|.+++...|.                .+.++.++|.+|..+|++++|+.++++++++.+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            3455567777777889999999999988776                455788999999999999999999999999998


Q ss_pred             hcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          149 NVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       149 ~~~-~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ... +....+.++.++|.++...|++++|+++|++++...
T Consensus        74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            754 455577899999999999999999999999999874

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.37  E-value=1.6e-11  Score=99.70  Aligned_cols=125  Identities=18%  Similarity=0.166  Sum_probs=106.1

Q ss_pred             HHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948           79 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK  158 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~  158 (230)
                      ...+.+.++..+.+++...|.           ..   ...++..+|.++...|++++|+.++++++++.+.      ...
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~-----------~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~  252 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPT-----------SI---DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYL  252 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTT-----------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred             hcccHHHHHHHHHHHHHhCcC-----------cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHH
Confidence            444667777777777776654           10   2446789999999999999999999999997544      467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++.++|.++...|++++|+.+|++++++.      |....++.++|.+|...|++++|+.+|++++++.++
T Consensus       253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          253 LWNKLGATLANGNQSEEAVAAYRRALELQ------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  317 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            89999999999999999999999999885      677899999999999999999999999999987653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=1.7e-11  Score=92.38  Aligned_cols=102  Identities=13%  Similarity=0.058  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-  194 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-  194 (230)
                      ....+..+|.++...|++++|+.++.++++..+.      ...++..+|.++...|++++|+++++++++..      | 
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~  179 (225)
T 2vq2_A          112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELARTKMLAGQLGDADYYFKKYQSRV------EV  179 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------CS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC
Confidence            4557888999999999999999999999986544      46788899999999999999999999998876      5 


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .....+..++.++...|++++|..+++.+....+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~  214 (225)
T 2vq2_A          180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY  214 (225)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence            66778888899999999999999999988876543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.37  E-value=1.3e-11  Score=106.82  Aligned_cols=129  Identities=13%  Similarity=0.013  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC
Q 026948           72 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  151 (230)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  151 (230)
                      ..+.......+.+.++..+++++...+.                ...++..+|.+|..+|++++|+.+|++++++.+.  
T Consensus        28 ~lg~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--   89 (568)
T 2vsy_A           28 MLADAELGMGDTTAGEMAVQRGLALHPG----------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--   89 (568)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTTSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--
Confidence            3344444445677788888888887765                3557889999999999999999999999997654  


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhh
Q 026948          152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL---GDLERAARFYDKYISRLE  228 (230)
Q Consensus       152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~  228 (230)
                          ...++.++|.++...|++++|+++|++++++.      |....++.++|.++..+   |++++|...|+++++..+
T Consensus        90 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A           90 ----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL------PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence                57789999999999999999999999999985      66788999999999999   999999999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.36  E-value=9.7e-12  Score=99.12  Aligned_cols=126  Identities=13%  Similarity=0.142  Sum_probs=101.6

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+.+.++..+.+++...+.                ....+..+|.++...|++++|+.+++++++..+.      ...++
T Consensus       139 ~~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~  196 (330)
T 3hym_B          139 SEHDQAMAAYFTAAQLMKG----------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVM  196 (330)
T ss_dssp             TCHHHHHHHHHHHHHHTTT----------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHH
T ss_pred             cCHHHHHHHHHHHHHhccc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------ChHHH
Confidence            3556666666666665543                2235667899999999999999999999985443      56789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEY---SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+|.++...|++++|+.++++++++.+..++.   +....++.++|.++...|++++|+.+|+++++..+
T Consensus       197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  267 (330)
T 3hym_B          197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP  267 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence            999999999999999999999999987654443   44467999999999999999999999999998754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=1.8e-11  Score=94.29  Aligned_cols=121  Identities=16%  Similarity=0.137  Sum_probs=94.0

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+++...+.                ...++..+|.++...|++++|+.+++++++    .+..+....++.
T Consensus        86 ~~~~A~~~~~~a~~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~  145 (252)
T 2ho1_A           86 EPKLADEEYRKALASDSR----------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFE  145 (252)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCcC----------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHH
Confidence            556666666666665443                234677888899999999999999988877    122333667888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+|.++...|++++|+.+++++++..      +....++..+|.++...|++++|..+++++++..+
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  206 (252)
T 2ho1_A          146 NLGLVSLQMKKPAQAKEYFEKSLRLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG  206 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            89999999999999999999988874      55678888999999999999999999998887543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=1.6e-11  Score=95.59  Aligned_cols=144  Identities=13%  Similarity=0.133  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHh--------CCCHHHHHHHHH
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR--------NQDLEKAFTEFK  141 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~g~~~~A~~~~~  141 (230)
                      +...+.......+.+.++..+.+.+...|.           .+  ....+++.+|.++..        .|++++|+..|+
T Consensus        55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-----------~~--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~  121 (261)
T 3qky_A           55 QFYLARAYYQNKEYLLAASEYERFIQIYQI-----------DP--RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQ  121 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------CT--THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-----------Cc--hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence            444445555556788888889999888775           11  134578899999999        999999999999


Q ss_pred             HHHHHHHhcCChHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948          142 AALELAQNVKDPIEE-----------KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       142 ~al~l~~~~~~~~~~-----------~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  210 (230)
                      ++++..+........           ...++.+|.++...|+|++|+..|+++++..   ++.+....+++.+|.+|..+
T Consensus       122 ~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          122 LFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHh
Confidence            999977653322211           1123899999999999999999999998874   23334778999999999987


Q ss_pred             ----------CCHHHHHHHHHHHHHhhhc
Q 026948          211 ----------GDLERAARFYDKYISRLES  229 (230)
Q Consensus       211 ----------g~~~~A~~~~~~al~~~~~  229 (230)
                                |++++|+..|+++++..++
T Consensus       199 g~~~~~~~~~~~~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          199 AEQSVRARQPERYRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred             cccchhhcccchHHHHHHHHHHHHHHCCC
Confidence                      9999999999999987654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.35  E-value=4.1e-12  Score=109.99  Aligned_cols=119  Identities=15%  Similarity=0.105  Sum_probs=92.8

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+.++..+++++...+.                ...+++.+|.++...|++++|+.+|++++++.+.      ...++.+
T Consensus         5 ~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~   62 (568)
T 2vsy_A            5 GPRELLQLRAAVRHRPQ----------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVAR   62 (568)
T ss_dssp             ----------------C----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence            34455556666655544                3457889999999999999999999999996544      5788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +|.++...|++++|+++|++++++.      |....++.++|.+|..+|++++|+.+|+++++..+.
T Consensus        63 lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A           63 LGRVRWTQQRHAEAAVLLQQASDAA------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999985      667899999999999999999999999999987543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.35  E-value=1.1e-12  Score=116.27  Aligned_cols=126  Identities=17%  Similarity=0.078  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +..+....+.+.++..+.+++...|.                ...+++.+|.++...|++++|+..|++++++.+.    
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~----  499 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVGW----------------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG----  499 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCcc----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence            34444445677888888888877765                4558889999999999999999999999997765    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                        ...++.++|.++...|++++ +++|++++++.      |....+++++|.++..+|++++|+.+|++++++.+
T Consensus       500 --~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  565 (681)
T 2pzi_A          500 --ELAPKLALAATAELAGNTDE-HKFYQTVWSTN------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR  565 (681)
T ss_dssp             --CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred             --ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence              57788999999999999999 99999999986      77889999999999999999999999999987543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=1.1e-11  Score=93.20  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      +...++.+|..+...|++++|+.+|++++.      .   ...+++++|.++...|++++|+++|++++.+.      |.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~   69 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KH   69 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cc
Confidence            455678999999999999999999998852      2   35689999999999999999999999999985      66


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...+++++|.+|..+|++++|+.+|+++++..+
T Consensus        70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence            789999999999999999999999999998654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.34  E-value=8.1e-12  Score=93.40  Aligned_cols=150  Identities=15%  Similarity=0.165  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 026948           63 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  142 (230)
Q Consensus        63 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  142 (230)
                      .......+...+.......+.+.++..|.+++...+....................++.++|.++...|++++|+.++.+
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            33444556666677777778888999999999877652110000000000111235788999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHH-HHHH
Q 026948          143 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYD  221 (230)
Q Consensus       143 al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~-~~~~  221 (230)
                      ++++.+.      ...+++++|.++...|++++|+.+|++++.+.      |....++..++.++..+++++++. ..|.
T Consensus       114 al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~  181 (198)
T 2fbn_A          114 VLKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASLN------PNNLDIRNSYELCVNKLKEARKKDKLTFG  181 (198)
T ss_dssp             HHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHhCcc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997554      57889999999999999999999999999985      777899999999999999998887 4444


Q ss_pred             HHH
Q 026948          222 KYI  224 (230)
Q Consensus       222 ~al  224 (230)
                      +..
T Consensus       182 ~~f  184 (198)
T 2fbn_A          182 GMF  184 (198)
T ss_dssp             ---
T ss_pred             HHh
Confidence            443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.33  E-value=2.9e-11  Score=96.20  Aligned_cols=120  Identities=18%  Similarity=0.210  Sum_probs=102.0

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+++...+.                ....+..+|.++...|++++|+.++.++++..+.      ...++.
T Consensus       153 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  210 (327)
T 3cv0_A          153 EYRECRTLLHAALEMNPN----------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWN  210 (327)
T ss_dssp             HHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHH
Confidence            455666666666655543                3457889999999999999999999999986544      467899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|.++...|++++|+.+|+++++..      |....++..+|.+|...|++++|+.+|++++...+.
T Consensus       211 ~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          211 KLGATLANGNRPQEALDAYNRALDIN------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999885      667889999999999999999999999999987653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=1.4e-11  Score=103.55  Aligned_cols=114  Identities=15%  Similarity=0.018  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      .+..++.+|.++..+|++++|+.+|++++++.+....   .+....++.++|.+|..+|++++|+.++++++++.+...+
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3446778999999999999999999999998875432   3345678999999999999999999999999999887654


Q ss_pred             --cccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhhc
Q 026948          193 --YSGSTEAYGAIADCYTEL--GDLERAARFYDKYISRLES  229 (230)
Q Consensus       193 --~~~~~~~~~~lg~~y~~~--g~~~~A~~~~~~al~~~~~  229 (230)
                        .+..+.++.++|.++...  ++|++|+.+|++++.+-++
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~  170 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK  170 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence              345678899999888765  4799999999999987543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.33  E-value=1.1e-11  Score=101.72  Aligned_cols=97  Identities=20%  Similarity=0.300  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ++..+|.++...|++++|+..|++++++.+.      ...++.++|.++...|++++|+++|+++++..      |....
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~  306 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTHAD  306 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHH
Confidence            4445555555555555555555555553222      33455556666666666666666666665553      44455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++.++|.++...|++++|+..|+++++..
T Consensus       307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          307 SLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            56666666666666666666666655543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.33  E-value=3.2e-11  Score=93.83  Aligned_cols=133  Identities=17%  Similarity=0.148  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +.......+.+.++..+.+++...|.                ...++..+|.++...|++++|+.++++++++.+.    
T Consensus        50 ~~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----  109 (275)
T 1xnf_A           50 GVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT----  109 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHcccHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc----
Confidence            33334444556666666666665543                2335666777777777777777777777775443    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------------------------------------------
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG------------------------------------------  191 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~------------------------------------------  191 (230)
                        ...++.++|.++...|++++|+++|++++++.....                                          
T Consensus       110 --~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  187 (275)
T 1xnf_A          110 --YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY  187 (275)
T ss_dssp             --CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHH
T ss_pred             --ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence              345667777777777777777777777665431100                                          


Q ss_pred             ------------------Ccc----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          192 ------------------EYS----GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       192 ------------------~~~----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                                        ..+    ....++..+|.+|...|++++|+.+|++++...+
T Consensus       188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  246 (275)
T ss_dssp             TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence                              000    1257888899999999999999999999987654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.33  E-value=2.7e-11  Score=93.30  Aligned_cols=102  Identities=16%  Similarity=0.079  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....+..+|.++...|++++|+.+++++++..+.      ...++..+|.++...|++++|+.+++++++..      +.
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~  207 (252)
T 2ho1_A          140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSVALEMADLLYKEREYVPARQYYDLFAQGG------GQ  207 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------CC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cC
Confidence            4557888999999999999999999999886544      46778899999999999999999999987764      56


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ...++..++.++...|++++|..+++++++..+.
T Consensus       208 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            6788999999999999999999999999887654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.33  E-value=3.7e-11  Score=103.85  Aligned_cols=107  Identities=19%  Similarity=0.161  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE-KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ..++..+|.+|...|++++|+..|+++++..++.+..+.. ..++..+|.++...|++++|++.|+++++..      |.
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~  548 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS------TN  548 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------SC
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CC
Confidence            3467789999999999999999999999987765544443 6789999999999999999999999998875      66


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ...++..+|.+|...|++++|..+|++++++.++
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            7789999999999999999999999999987654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.32  E-value=8.9e-12  Score=101.15  Aligned_cols=127  Identities=20%  Similarity=0.243  Sum_probs=104.7

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+.+.++..+.+++...|.                ...++..+|.++...|++++|+.+|++++++.+.      ...++
T Consensus       231 g~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~  288 (368)
T 1fch_A          231 GEYDKAVDCFTAALSVRPN----------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSR  288 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Confidence            3566677777777766554                3457889999999999999999999999997544      56789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGE-----YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~-----~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .++|.++...|++++|+.+|++++.+.....+     .+....+|..+|.+|..+|++++|...++++++.+.+
T Consensus       289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  362 (368)
T 1fch_A          289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT  362 (368)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence            99999999999999999999999998754321     1223789999999999999999999999999987653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.32  E-value=8.9e-12  Score=102.32  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ++..+|.++...|++++|+..|++++++.+.      ...++.++|.++...|++++|+++|+++++..      |....
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~  340 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFAA  340 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC------TTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHH
Confidence            4555666666666666666666666654332      34455566666666666666666666665542      44455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++.++|.+|...|++++|+.+|++++++.
T Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          341 AHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            66666666666666666666666665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.31  E-value=4.5e-12  Score=103.09  Aligned_cols=110  Identities=18%  Similarity=0.210  Sum_probs=91.2

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---C--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---D--------PIEEKKAARGLGASLQRQGKYREAIKYHS  181 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~--------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~  181 (230)
                      ....+..+..+|..++..|+|++|+.+|.+++.+.+...   .        ......++.++|.++...|+|++|+.+|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345677888999999999999999999999998754410   0        00011489999999999999999999999


Q ss_pred             HHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       182 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +++++.      |....+|+++|.+|..+|++++|+.+|++++++.+
T Consensus       255 ~al~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p  295 (338)
T 2if4_A          255 IVLTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP  295 (338)
T ss_dssp             HHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred             HHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            999985      77789999999999999999999999999987654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.31  E-value=8.3e-11  Score=97.77  Aligned_cols=149  Identities=11%  Similarity=0.045  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +...+..+...++.+.++..+.+.+...+.          .............+|.++...|++++|+.++++++...+.
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  127 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQ----------FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR  127 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHT----------SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            444444445555777777778777776654          2333344456678899999999999999999999999998


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++......++.++|.++...|+|++|+.++++++.......+.+....++..+|.+|..+|++++|..+|++++.+..
T Consensus       128 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          128 EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            8888888899999999999999999999999999999888888888999999999999999999999999999998753

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.30  E-value=1.6e-11  Score=97.77  Aligned_cols=126  Identities=10%  Similarity=0.130  Sum_probs=102.0

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..+.+++...+.                ...++..+|.++...|++++|+.+++++++..+.      ...++.
T Consensus       187 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~  244 (327)
T 3cv0_A          187 NYDSAAANLRRAVELRPD----------------DAQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMY  244 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHH
Confidence            456666666666665543                3447889999999999999999999999996544      567889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSG------STEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|.++...|++++|+++|++++.+.....+...      ...++..+|.++..+|++++|...++++++.+++
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence            9999999999999999999999998732211111      6889999999999999999999999998887653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.30  E-value=2.8e-11  Score=94.22  Aligned_cols=127  Identities=17%  Similarity=0.088  Sum_probs=100.8

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+.+.++..+.+++...+.                ...++..+|...+..+++++|+.++++++++.+.      ...++
T Consensus       122 ~~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~  179 (272)
T 3u4t_A          122 GNFPLAIQYMEKQIRPTTT----------------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN------IYIGY  179 (272)
T ss_dssp             TCHHHHHHHHGGGCCSSCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHH
T ss_pred             cCHHHHHHHHHHHhhcCCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------chHHH
Confidence            3556666666666665443                3457888994444566999999999999997655      46788


Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          161 RGLGASLQRQGK---YREAIKYHSMVLQISEREGEY--SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       161 ~~lg~~~~~~~~---~~~Ai~~~~~al~~~~~~~~~--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ..+|.++...|+   +++|+.+|++++++....++.  .....++..+|.+|...|++++|+.+|++++++.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  253 (272)
T 3u4t_A          180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT  253 (272)
T ss_dssp             HHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            999999999999   999999999999987554442  234578999999999999999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.30  E-value=3.5e-11  Score=96.76  Aligned_cols=132  Identities=20%  Similarity=0.180  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+...+.......+.+.++..+.+++...|.                ...++..+|.++...|++++|+..+++++++.+
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   68 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKM   68 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3444455555556778888888888877665                345788999999999999999999999999754


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc---cHHHHHHHH------------HHHHHHcCCH
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAI------------ADCYTELGDL  213 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~---~~~~~~~~l------------g~~y~~~g~~  213 (230)
                      .      ...++..+|.++...|++++|+.+|+++++..      |   ....++..+            |.++...|++
T Consensus        69 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           69 D------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY  136 (359)
T ss_dssp             T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             C------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence            4      45789999999999999999999999998774      5   566677666            7999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 026948          214 ERAARFYDKYISRLE  228 (230)
Q Consensus       214 ~~A~~~~~~al~~~~  228 (230)
                      ++|+..++++++..+
T Consensus       137 ~~A~~~~~~~~~~~~  151 (359)
T 3ieg_A          137 TAAITFLDKILEVCV  151 (359)
T ss_dssp             HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999988654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.30  E-value=1.3e-10  Score=96.65  Aligned_cols=156  Identities=12%  Similarity=0.055  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccC-ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 026948           72 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVD-PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  150 (230)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  150 (230)
                      ++.+.+...++++.++..|.+.+...+............. .......++..+|.+|...|++++|.+++.++++..+..
T Consensus         9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~   88 (434)
T 4b4t_Q            9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF   88 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            3455566666788888889888888776544333222111 222344567899999999999999999999999999988


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ++......+...+|.++...|++++|+.++++++.+..+.++......++.++|.+|...|+|++|..++++++...
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            77777777888999999999999999999999999999988888899999999999999999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.30  E-value=9.5e-11  Score=94.21  Aligned_cols=102  Identities=16%  Similarity=0.211  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      ...+|.++...|++++|+..++++++..+.  +......++..+|.++...|++++|+++|+++++..      |..+.+
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~  308 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME------PDNVNA  308 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------cccHHH
Confidence            346699999999999999999999997655  555566778899999999999999999999999884      667889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +..+|.++...|++++|..+|++++++.++
T Consensus       309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.1e-12  Score=88.27  Aligned_cols=101  Identities=10%  Similarity=0.133  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+.++..+|..++..|++++|+..|++++++.+.      ...++.++|.++...|++++|+++|++++++.....+...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            3457889999999999999999999999997655      5678999999999999999999999999988522111112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDK  222 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~  222 (230)
                      ...++..+|.++..+|+++.|+..+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            388999999999999998888766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.29  E-value=4.4e-11  Score=91.35  Aligned_cols=141  Identities=14%  Similarity=0.062  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +...+.......+.+.++..|.+.+...|.           .+.  ...+++.+|.+|+..|++++|+..|+++++..+.
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-----------~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~   73 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPF-----------GPY--SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT   73 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------STT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------ChH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            344455566666788888888888887664           111  2347889999999999999999999999997665


Q ss_pred             cCChHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhCCcccHH--------------
Q 026948          150 VKDPIEEKKAARGLGASLQR------------------QGKYREAIKYHSMVLQISEREGEYSGST--------------  197 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~------------------~~~~~~Ai~~~~~al~~~~~~~~~~~~~--------------  197 (230)
                      ..   ....+++.+|.++..                  .|++++|+..|+++++....   .+...              
T Consensus        74 ~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~---~~~a~~a~~~l~~~~~~~~  147 (225)
T 2yhc_A           74 HP---NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN---SQYTTDATKRLVFLKDRLA  147 (225)
T ss_dssp             CT---THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT---CTTHHHHHHHHHHHHHHHH
T ss_pred             CC---cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC---ChhHHHHHHHHHHHHHHHH
Confidence            22   244678888888876                  67999999999999876522   22111              


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .....+|.+|...|++++|+..|+++++.++.
T Consensus       148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  179 (225)
T 2yhc_A          148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD  179 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence            12367899999999999999999999987653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.29  E-value=2.4e-11  Score=87.90  Aligned_cols=137  Identities=12%  Similarity=0.081  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCC--CCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 026948           66 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRI--PEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA  143 (230)
Q Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a  143 (230)
                      ....+.+.+.......+++.++..|.+++...+.....  ...............++.++|.+|...|++++|+.++.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34566777777777778899999999998874321000  0000000003335668889999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH-HHHHHHHHHHHHcCCHH
Q 026948          144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLE  214 (230)
Q Consensus       144 l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~-~~~~~lg~~y~~~g~~~  214 (230)
                      +++.+.      ...+++.+|.++...|++++|+.+|++++.+.      |... .+...++.+....++++
T Consensus        90 l~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           90 LKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH------PAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------GGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHH
Confidence            997655      67899999999999999999999999999995      6655 66777888877665544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.28  E-value=5.1e-11  Score=82.02  Aligned_cols=98  Identities=28%  Similarity=0.486  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +++.+|..+...|++++|+..++++++..+.      ...++..+|.++...|++++|+.++++++...      +....
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~   70 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSAE   70 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC------CCchH
Confidence            5678899999999999999999999986433      45678899999999999999999999998874      55678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++..+|.++...|++++|+.++++++...+
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            899999999999999999999999988654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.28  E-value=5.2e-11  Score=81.77  Aligned_cols=116  Identities=13%  Similarity=0.153  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +...+.......+.+.++..+.+++...+.                ...++..+|.++...|++++|+.++.+++...+.
T Consensus        15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A           15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA----------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            333444444444667777778777776654                2447889999999999999999999999996544


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCH
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL  213 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~  213 (230)
                            ...++..+|.++...|++++|+.+|++++.+.      |....++..+|.++..+|++
T Consensus        79 ------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 ------YSKAYGRMGLALSSLNKHVEAVAYYKKALELD------PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTTC
T ss_pred             ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHHhcC
Confidence                  46789999999999999999999999999885      66778999999999999876

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.28  E-value=3.1e-12  Score=108.72  Aligned_cols=101  Identities=16%  Similarity=0.196  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+.++..+|..+...|++++|+.+|++++++.+.      ...++.++|.++..+|+|++|+++|++++++.      |.
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~   72 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD------KK   72 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CC
Confidence            3445667788889999999999999999997555      57889999999999999999999999999885      67


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.+++++|.+|..+|++++|+.+|++++++.+
T Consensus        73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p  105 (477)
T 1wao_1           73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKP  105 (477)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            788999999999999999999999999998754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=4.7e-12  Score=107.52  Aligned_cols=116  Identities=15%  Similarity=0.186  Sum_probs=95.8

Q ss_pred             HHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026948           84 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  163 (230)
Q Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l  163 (230)
                      +.++..|.+++...|.                ...+++.+|.+|...|++++|+.+|++++++.+.       ..++.++
T Consensus       120 ~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~l  176 (474)
T 4abn_A          120 PEAEVLLSKAVKLEPE----------------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------KVSLQNL  176 (474)
T ss_dssp             HHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------HHHHHHH
T ss_pred             HHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------HHHHHHH
Confidence            5555555555555443                3457889999999999999999999999985322       3789999


Q ss_pred             HHHHHHc---------CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 026948          164 GASLQRQ---------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------GDLERAARFYDKYISR  226 (230)
Q Consensus       164 g~~~~~~---------~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--------g~~~~A~~~~~~al~~  226 (230)
                      |.++...         |++++|+++|++++++.      |....+|+++|.+|..+        |++++|+.+|++++++
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            9999999         99999999999999885      77788999999999999        9999999999999987


Q ss_pred             hh
Q 026948          227 LE  228 (230)
Q Consensus       227 ~~  228 (230)
                      .+
T Consensus       251 ~p  252 (474)
T 4abn_A          251 DR  252 (474)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.27  E-value=3.5e-12  Score=91.57  Aligned_cols=88  Identities=17%  Similarity=0.249  Sum_probs=78.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------REAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~----------~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      .+.|++|+..+++++++.+.      .+.++.++|.++...+++          ++|+..|++|+++.      |....+
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------P~~~~A   82 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------PKKDEA   82 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC------cCcHHH
Confidence            35689999999999997766      788999999999998875          59999999999996      888999


Q ss_pred             HHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhhc
Q 026948          200 YGAIADCYTELG-----------DLERAARFYDKYISRLES  229 (230)
Q Consensus       200 ~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~  229 (230)
                      |+++|.+|..+|           ++++|+.+|++|+++-++
T Consensus        83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            999999999885           899999999999997653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.27  E-value=5.6e-11  Score=82.09  Aligned_cols=116  Identities=13%  Similarity=0.163  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+...+.......+.+.++..+.+++...+.                ...++..+|.++...|++++|+.++++++++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~   81 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP   81 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            3444444455555667777778888776654                345788999999999999999999999999754


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCC
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  212 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~  212 (230)
                      .      ...++.++|.++...|++++|+.+|++++...      |....++..++.++..+|+
T Consensus        82 ~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           82 T------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD------SSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------GGGTHHHHHHHHHHHHHTC
T ss_pred             C------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHhcC
Confidence            4      56789999999999999999999999999885      6677899999999988775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.26  E-value=1.1e-10  Score=97.82  Aligned_cols=108  Identities=12%  Similarity=0.022  Sum_probs=95.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccH
Q 026948          121 LKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGS  196 (230)
Q Consensus       121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~  196 (230)
                      ......+..+|+|++|+..+++++++..+.  .+++....++.++|.+|..+|+|++|+.++++++++.++.  ++.|..
T Consensus       291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~  370 (429)
T 3qwp_A          291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR  370 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence            333445668899999999999999876543  4677789999999999999999999999999999998874  567889


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +..+++||.+|..+|++++|..+|++|+++.+
T Consensus       371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.26  E-value=3.2e-11  Score=101.99  Aligned_cols=146  Identities=16%  Similarity=0.142  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 026948           66 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  145 (230)
Q Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  145 (230)
                      ....+...+..+....+++.++..|.+++...+....... +...........+++++|.+|..+|+|++|+.+|+++++
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE-KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            3345666677777777889999999999988776211000 000011222356788999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHH-HHHHH
Q 026948          146 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF-YDKYI  224 (230)
Q Consensus       146 l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~-~~~al  224 (230)
                      +.+.      ...+++++|.++..+|+|++|+.+|++++++.      |....++.+++.++..++++++|... |++.+
T Consensus       346 ~~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          346 LDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cCCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665      67899999999999999999999999999885      67778999999999999999988753 44433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.26  E-value=7.6e-11  Score=84.72  Aligned_cols=103  Identities=12%  Similarity=0.047  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 026948           63 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  142 (230)
Q Consensus        63 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  142 (230)
                      .+...+.+...+..+...++.+.++..|++++...|.                ....++.+|.+|...|++++|+.+|++
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----------------NVDYIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            3455556667777777777899999999999998886                456899999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          143 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       143 al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ++++.+.      .+.+++++|.++...|++++|+.+|++++++.
T Consensus        96 al~l~P~------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           96 AFALGKN------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHSSS------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9998766      56789999999999999999999999999985

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.25  E-value=2e-10  Score=82.60  Aligned_cols=121  Identities=12%  Similarity=0.032  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 026948           66 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  145 (230)
Q Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  145 (230)
                      +...+.+.+......++++.++..|.+++...|.-...   + ........+.++.++|.++..+|+|++|+.+|+++++
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~---~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE---E-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT---S-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch---h-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34567777888888889999999999999998862111   0 1122223455899999999999999999999999999


Q ss_pred             HHHh-cCChHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948          146 LAQN-VKDPIEEKKAA----RGLGASLQRQGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       146 l~~~-~~~~~~~~~~~----~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      ++++ ..-.+....++    +++|.++..+|++++|+.+|++++++....
T Consensus        86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            8332 12233366777    999999999999999999999999998553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.24  E-value=1.3e-11  Score=109.24  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ...+++.+|.++..+|++++|+..|++++++.+.      ...+++++|.++...|++++|++.|++++++.      |.
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~  499 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF------PG  499 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TT
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC
Confidence            3447889999999999999999999999997766      67899999999999999999999999999996      77


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++.++|.++..+|++++ +.+|++++++.+
T Consensus       500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P  531 (681)
T 2pzi_A          500 ELAPKLALAATAELAGNTDE-HKFYQTVWSTND  531 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred             ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence            78999999999999999999 999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.24  E-value=1.3e-10  Score=96.83  Aligned_cols=101  Identities=16%  Similarity=0.218  Sum_probs=89.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 026948          121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  200 (230)
Q Consensus       121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  200 (230)
                      ..+|..+...|++++|+.+|++++++.+.  +.......+..+|.++...|++++|+.++++++++.      |....++
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~  332 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME------PDNVNAL  332 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHH
Confidence            45599999999999999999999986554  444456789999999999999999999999999885      6678999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          201 GAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       201 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ..+|.++...|++++|+.+|++++++.+.
T Consensus       333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          333 KDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999999987543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.24  E-value=1.9e-10  Score=99.39  Aligned_cols=106  Identities=13%  Similarity=0.135  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ..++..+|..|...|++++|+.+|+++++..+.      ...++..+|.++...|++++|+++|+++++...+.+..|..
T Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~  514 (597)
T 2xpi_A          441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP  514 (597)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence            346778899999999999999999999886443      45678999999999999999999999999987765555653


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          197 -TEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       197 -~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                       ..++..+|.+|...|++++|+..|+++++..+
T Consensus       515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence             78999999999999999999999999988654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.23  E-value=2.4e-11  Score=89.19  Aligned_cols=66  Identities=20%  Similarity=0.267  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ...+++++|.++...|++++|+..|+++++..      |.  ...++.++|.++..+|++++|...|++++...
T Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~~  174 (176)
T 2r5s_A          107 NFELACELAVQYNQVGRDEEALELLWNILKVN------LGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYSI  174 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            46778899999999999999999999988774      33  35689999999999999999999999998753

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.23  E-value=1.2e-10  Score=75.23  Aligned_cols=84  Identities=26%  Similarity=0.442  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....++.+|.++...|++++|+.++++++++.+.      ...++.++|.++...|++++|+.+|++++++.      |.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~   75 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CC
Confidence            4567889999999999999999999999986544      46788999999999999999999999999885      67


Q ss_pred             HHHHHHHHHHHHHHcC
Q 026948          196 STEAYGAIADCYTELG  211 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g  211 (230)
                      ...++.++|.++..+|
T Consensus        76 ~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           76 NAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            7889999999988765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.22  E-value=9e-11  Score=99.92  Aligned_cols=105  Identities=15%  Similarity=0.164  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISE  188 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~Ai~~~~~al~~~~  188 (230)
                      .+..+|.++...|++++|+.+|++++++.+...........+..+|.++...          |++++|+.+|+++++.. 
T Consensus       380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-  458 (537)
T 3fp2_A          380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-  458 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence            5667788888888888888888888887766444433444466777778777          88888888888888774 


Q ss_pred             HhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          189 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       189 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                           |....++..+|.+|...|++++|+.+|++++++.+.
T Consensus       459 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          459 -----PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence                 667789999999999999999999999999987643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.22  E-value=1.2e-10  Score=84.35  Aligned_cols=111  Identities=15%  Similarity=0.087  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      ..+...+.......+.+.++..|.+++...+.                ...+++.+|.+|...|++++|+.+|++++++.
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   75 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD   75 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            44555566666666788888999999988776                35578899999999999999999999999976


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  206 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~  206 (230)
                      +.      ...+++++|.++...|++++|+.+|++++++.      |....++.+.+..
T Consensus        76 p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~l~  122 (164)
T 3sz7_A           76 PK------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE------GNGGSDAMKRGLE  122 (164)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------SSSCCHHHHHHHH
T ss_pred             CC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCchHHHHHHHHH
Confidence            55      57889999999999999999999999999987      4444444444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.21  E-value=1.9e-10  Score=95.89  Aligned_cols=134  Identities=20%  Similarity=0.203  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 026948           67 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  146 (230)
Q Consensus        67 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  146 (230)
                      ...+...+.......+.+.++..|.+++...|.                ...+++.+|.++...|++++|+..+.+++++
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            344555555566666778888888888876654                3557889999999999999999999999997


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH---HHHH------------HHHHHHHHcC
Q 026948          147 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST---EAYG------------AIADCYTELG  211 (230)
Q Consensus       147 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~---~~~~------------~lg~~y~~~g  211 (230)
                      .+.      ...++..+|.++...|++++|+.+|+++++..      |...   .++.            .+|.++...|
T Consensus        90 ~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  157 (450)
T 2y4t_A           90 KMD------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG  157 (450)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            554      57889999999999999999999999998764      4444   4444            4577899999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 026948          212 DLERAARFYDKYISRLE  228 (230)
Q Consensus       212 ~~~~A~~~~~~al~~~~  228 (230)
                      ++++|+.+|++++...+
T Consensus       158 ~~~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A          158 DYTAAIAFLDKILEVCV  174 (450)
T ss_dssp             CHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHhCC
Confidence            99999999999988654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.20  E-value=1.2e-10  Score=95.93  Aligned_cols=139  Identities=15%  Similarity=0.128  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      .+...+.......+.+.++..|.+++...+........+...........+++++|.+|..+|++++|+.++++++++.+
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            45555566666667788888888888754331000000001113344667888999999999999999999999999544


Q ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHH
Q 026948          149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF  219 (230)
Q Consensus       149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  219 (230)
                      .      ...+++++|.++...|++++|+++|++++++.      |....++..++.++..+++++++...
T Consensus       305 ~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~------P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          305 S------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA------PEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             h------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3      67899999999999999999999999999985      66788999999999999999888653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.20  E-value=4.6e-10  Score=87.73  Aligned_cols=94  Identities=18%  Similarity=0.300  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 026948          117 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISE  188 (230)
Q Consensus       117 ~~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~  188 (230)
                      ..+++.+|.+|..    .+++++|+.+|+++++.        ....++.++|.++..    .+++++|+++|+++++.. 
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-  144 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-  144 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence            3467788888888    88888888888888773        145678888888888    888888888888887642 


Q ss_pred             HhCCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948          189 REGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  226 (230)
Q Consensus       189 ~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  226 (230)
                             ...++.++|.+|..    .+++++|+.+|+++++.
T Consensus       145 -------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          145 -------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence                   35678888888888    88888888888888765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.19  E-value=1.4e-10  Score=82.01  Aligned_cols=101  Identities=10%  Similarity=-0.044  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 026948           66 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  145 (230)
Q Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  145 (230)
                      ....+...+.......+.+.++..+.+++...|.                ....++.+|.++...|++++|+.+|++++.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----------------DARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3344555556666666788888889888887775                455788999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948          146 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  188 (230)
Q Consensus       146 l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~  188 (230)
                      +.+.      ...+++++|.++...|++++|+.+|++++++..
T Consensus        81 ~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           81 MDIN------EPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7655      567889999999999999999999999999873

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.19  E-value=3.2e-10  Score=86.50  Aligned_cols=106  Identities=8%  Similarity=-0.049  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..++.+|..++..|++++|+..|+++++..+.   .+....+++.+|.++...|+|++|+..|+++++..   ++.+...
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---P~~~~~~   78 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNID   78 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCcHH
Confidence            36888999999999999999999999986543   23346789999999999999999999999998875   2334455


Q ss_pred             HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhhhc
Q 026948          198 EAYGAIADCYTE------------------LGDLERAARFYDKYISRLES  229 (230)
Q Consensus       198 ~~~~~lg~~y~~------------------~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+++.+|.++..                  .|++++|+..|+++++..+.
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~  128 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN  128 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence            689999999986                  57999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.18  E-value=1.8e-10  Score=98.03  Aligned_cols=100  Identities=22%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ..++..+|.++...|++++|+..+++++++.+.      ...++..+|.++...|++++|+.+|+++++..      |..
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~  377 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF------PTL  377 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence            446778888888889999999999888886544      34678888889999999999999999988874      556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..++..+|.++...|++++|+.+|+++++..+
T Consensus       378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            77888889999999999999999999887654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.18  E-value=9.1e-11  Score=93.07  Aligned_cols=135  Identities=14%  Similarity=0.097  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ-  148 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-  148 (230)
                      +..........++.+.++..|++++...|.                ...+++.+|.++..+|++++|+..+++++...+ 
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~  183 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ----------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD  183 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence            444455555556778888888888888776                445788899999999999999887776543111 


Q ss_pred             --------------h-------------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH--HHH
Q 026948          149 --------------N-------------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS--TEA  199 (230)
Q Consensus       149 --------------~-------------~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~--~~~  199 (230)
                                    .             ....+....+++++|.++...|++++|++.|+++++..      |..  ..+
T Consensus       184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~------p~~~~~~a  257 (287)
T 3qou_A          184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD------LTAADGQT  257 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTGGGGHH
T ss_pred             hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------cccccchH
Confidence                          0             00122245678888888888888888888888888875      444  678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      +.++|.++..+|+.++|...|++++..
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            888888888888888888888888764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.18  E-value=6.9e-11  Score=99.93  Aligned_cols=105  Identities=15%  Similarity=0.173  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ..+..+|.++...|++++|+.+++++++..+..........++.++|.++..   .|++++|+.+|++++...      |
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~------~  446 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD------P  446 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC------c
Confidence            3677889999999999999999999999887744333234588999999999   999999999999999885      6


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ....++..+|.+|...|++++|..+|++++++.+
T Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            6788999999999999999999999999998764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.18  E-value=1.1e-10  Score=79.31  Aligned_cols=82  Identities=12%  Similarity=0.158  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH
Q 026948          135 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  214 (230)
Q Consensus       135 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  214 (230)
                      +|+..|+++++..+.      ...+++++|.++...|++++|+.+|++++++.      |....+++++|.+|..+|+++
T Consensus         3 ~a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            3 AITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD------PTYSVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CHHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHcCCHH
Confidence            456677777764333      45677788888888888888888888887774      556777888888888888888


Q ss_pred             HHHHHHHHHHHhhh
Q 026948          215 RAARFYDKYISRLE  228 (230)
Q Consensus       215 ~A~~~~~~al~~~~  228 (230)
                      +|+.+|++++++.+
T Consensus        71 ~A~~~~~~al~~~~   84 (115)
T 2kat_A           71 GARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            88888888877653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.18  E-value=3.4e-10  Score=90.04  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=67.3

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 026948          128 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  207 (230)
Q Consensus       128 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  207 (230)
                      ...|++++|+..|+++++..+.      ...+++++|.++...|++++|+..|+++++..      |..+.++.++|.++
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~------p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSP------TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD------SGHPETLINLVVLS  244 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence            3456777777777777764332      45677888888888888888888888888875      77778888888888


Q ss_pred             HHcCCHHH-HHHHHHHHHHhhhc
Q 026948          208 TELGDLER-AARFYDKYISRLES  229 (230)
Q Consensus       208 ~~~g~~~~-A~~~~~~al~~~~~  229 (230)
                      ..+|++++ +..++++++++.++
T Consensus       245 ~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          245 QHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHcCCCHHHHHHHHHHHHHhCCC
Confidence            88888865 46777888776543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.17  E-value=1.3e-10  Score=83.02  Aligned_cols=100  Identities=9%  Similarity=-0.019  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 026948           66 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  145 (230)
Q Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  145 (230)
                      ....+...+.......+.+.++..|.+++...|.                ....++.+|.++...|++++|+.+|++++.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----------------DSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3444555566666667888888899998887776                455788999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          146 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       146 l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.+.      ...+++++|.++...|++++|+.+|++++++.
T Consensus        84 l~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           84 MDIX------EPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            7665      56789999999999999999999999999986

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.16  E-value=1.8e-11  Score=99.47  Aligned_cols=148  Identities=9%  Similarity=0.047  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCccccc-CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIV-DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      .+...+.......+++.++..|.+++...+............ ........+++++|.+|..+|+|++|+.++++++++.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            344444444444466778888888887765411000000000 0000011367899999999999999999999999976


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC-YTELGDLERAARFYDKYISR  226 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~-y~~~g~~~~A~~~~~~al~~  226 (230)
                      +.      ...+++++|.++..+|+|++|+.+|++++++.      |....++.+++.+ ....++.+++...|.+++..
T Consensus       261 p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          261 EK------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA------PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             TT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            54      67899999999999999999999999999886      6678889999998 45667888999999999876


Q ss_pred             hh
Q 026948          227 LE  228 (230)
Q Consensus       227 ~~  228 (230)
                      .+
T Consensus       329 ~p  330 (338)
T 2if4_A          329 KD  330 (338)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.15  E-value=1.3e-11  Score=104.99  Aligned_cols=112  Identities=20%  Similarity=0.238  Sum_probs=92.0

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..|++++...|.                ...++..+|.+|..+|++++|+.++++++++.+.      ...+++
T Consensus        21 ~~~~A~~~~~~Al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~   78 (477)
T 1wao_1           21 DYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYY   78 (477)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            456677778888877665                3567889999999999999999999999996443      678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC--YTELGDLERAARFYD  221 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~--y~~~g~~~~A~~~~~  221 (230)
                      ++|.++..+|++++|+++|++++++.      |....++.+++.+  +...|++++|+..++
T Consensus        79 ~lg~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           79 RRAASNMALGKFRAALRDYETVVKVK------PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHS------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999985      5566788888888  889999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=5.6e-10  Score=94.31  Aligned_cols=102  Identities=18%  Similarity=0.222  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ...+..+..+|..++..|++++|+..|+++++..+       ...++.++|.++...|++++|+.+|+++++..      
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------   69 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-------DPVFYSNLSACYVSVGDLKKVVEMSTKALELK------   69 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC------
Confidence            34667899999999999999999999999999652       26789999999999999999999999999885      


Q ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      |....++..+|.+|..+|++++|+..|++++...+
T Consensus        70 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  104 (514)
T 2gw1_A           70 PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD  104 (514)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            77889999999999999999999999999987653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=1.5e-10  Score=97.21  Aligned_cols=142  Identities=10%  Similarity=-0.010  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +......++.+.++..|+++++..+....       .......+.++.++|.+|..+|++++|+.++++++++.+.....
T Consensus        58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~-------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           58 AYLKHLKGQNEAALECLRKAEELIQQEHA-------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSG-------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcCc-------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            33444445778888888888877543100       01122245577899999999999999999999999998875432


Q ss_pred             --HHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh
Q 026948          154 --IEEKKAARGLGASLQRQ--GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT---ELGDLERAARFYDKYISR  226 (230)
Q Consensus       154 --~~~~~~~~~lg~~~~~~--~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~---~~g~~~~A~~~~~~al~~  226 (230)
                        ...+.++.++|.++...  ++|++|+++|++++++.      |..+.++..+|.++.   ..+++++|++.|++++++
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~------p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l  204 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK------PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL  204 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence              23466788888777654  57999999999999985      777888888888754   467788999999999886


Q ss_pred             hh
Q 026948          227 LE  228 (230)
Q Consensus       227 ~~  228 (230)
                      .+
T Consensus       205 ~p  206 (472)
T 4g1t_A          205 NP  206 (472)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.13  E-value=2.1e-09  Score=89.99  Aligned_cols=130  Identities=13%  Similarity=0.067  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--
Q 026948           73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--  150 (230)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--  150 (230)
                      .+......++.+.++..+++++.....        ....+....+.++.++|.+|..+|+|++|+.++++++.+....  
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~--------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg  364 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSE--------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP  364 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSC--------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccC--------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence            344444444555666666666654332        1224455677788899999999999999999999999998863  


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHc
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~  210 (230)
                      .+++..+..+++||.+|..+|+|++|+.++++|+++.+..  ++.|....++.+|+.+..++
T Consensus       365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999999999999999999884  56788888999999988665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.13  E-value=1.9e-10  Score=76.47  Aligned_cols=66  Identities=12%  Similarity=0.160  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ...+++++|.++...|+|++|+++|++++++.      |....+|.++|.+|..+|++++|+.+|++++++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            34556666666666666666666666666654      4455566666666666666666666666666554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.12  E-value=2.1e-10  Score=78.31  Aligned_cols=87  Identities=13%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..|.+++...+             ++.....++..+|.+|...|++++|+.++++++++.+.      ...+++
T Consensus         5 ~~~~A~~~~~~al~~~~-------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~   65 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGL-------------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRV   65 (117)
T ss_dssp             --CCCHHHHHHHHSSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHHcCC-------------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHH
Confidence            34445556666665421             12336678999999999999999999999999997665      578899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ++|.++...|++++|+.+|++++...
T Consensus        66 ~l~~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           66 FYAMVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999886

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.10  E-value=1.2e-09  Score=86.85  Aligned_cols=103  Identities=16%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ..++..+|.++..+|++++|+..++++++..+.   .. ...........+...|++++|+..|+++++..      |..
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~---~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~------p~~  199 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDED---AT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC------SPT  199 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS------CCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---cH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC------CCc
Confidence            346788999999999999999999999986433   11 11111111123334589999999999999875      677


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +.+++++|.++..+|++++|...|++++...+.
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            899999999999999999999999999987653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.10  E-value=2.1e-09  Score=73.61  Aligned_cols=115  Identities=15%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CC
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KD  152 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~  152 (230)
                      +.......+.+.++..+.+++...+.                ....+..+|.++...|++++|+.++++++++.+.. .+
T Consensus        11 ~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   74 (131)
T 1elr_A           11 GNDAYKKKDFDTALKHYDKAKELDPT----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence            33344444666777777777776654                24478899999999999999999999999998864 34


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948          153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  211 (230)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  211 (230)
                      ......+++++|.++...|++++|+++|++++++.      + .......++.+...++
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH------R-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------C-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------C-CHHHHHHHHHHHHHHH
Confidence            44448899999999999999999999999999874      3 3677788888776554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.10  E-value=1.9e-09  Score=73.11  Aligned_cols=103  Identities=26%  Similarity=0.418  Sum_probs=83.7

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+.+.++..+.+++...+.                ....+..+|.++...|++++|+.+++++++..+.      ...++
T Consensus        23 ~~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~   80 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPN----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAW   80 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcC----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHH
Confidence            3555666666666665543                2346788999999999999999999999986443      45678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  211 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  211 (230)
                      ..+|.++...|++++|+.+++++++..      |....++.++|.++...|
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhcc
Confidence            899999999999999999999999885      667889999999987765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.10  E-value=1.2e-09  Score=85.41  Aligned_cols=93  Identities=17%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 026948          118 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       118 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~  189 (230)
                      .+++.+|.+|..    .+++++|+.+|+++++..        ...+++++|.++..    .+++++|+++|+++++.   
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---  107 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---  107 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence            456667777777    777777777777776631        35667777777777    77777777777777654   


Q ss_pred             hCCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948          190 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  226 (230)
Q Consensus       190 ~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  226 (230)
                           ..+.++.++|.+|..    .+++++|+.+|+++++.
T Consensus       108 -----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A          108 -----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             -----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             -----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence                 145677777777777    77777777777777764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.09  E-value=8.8e-10  Score=76.77  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +...+.......+.+.++..|.+++...|.                ...++..+|.++...|++++|+.++++++++.+.
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            344445555555777788888888887765                3457889999999999999999999999997655


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  211 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  211 (230)
                            ...+++++|.++...|++++|+.+|++++.+...... .....+...+..+.....
T Consensus        76 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           76 ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-NFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCTTHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHH-HHHHHHHHHHHHHHHHHH
Confidence                  5778999999999999999999999999999855221 124556666666655443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=1e-09  Score=83.07  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q 026948          119 SRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       119 ~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      +++.+|.+|..    .+++++|+.+|+++.+.    ++....+.++++||.+|..    .+++++|+.+|+++++.    
T Consensus        87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----  158 (212)
T 3rjv_A           87 GEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL----  158 (212)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc----
Confidence            55666666665    66666666666666651    1222446667777777777    66677777777776544    


Q ss_pred             CCcccHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 026948          191 GEYSGSTEAYGAIADCYTEL-G-----DLERAARFYDKYISR  226 (230)
Q Consensus       191 ~~~~~~~~~~~~lg~~y~~~-g-----~~~~A~~~~~~al~~  226 (230)
                         +..+.+++++|.+|..- |     ++++|+.+|+++.+.
T Consensus       159 ---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          159 ---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             ---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence               45566667777766653 2     677777777766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.07  E-value=7e-10  Score=81.26  Aligned_cols=103  Identities=13%  Similarity=0.085  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS------------  187 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~------------  187 (230)
                      .+.+|..+...|++++|+..|+++++..+.      ...++.++|.++...|++++|+..+++++...            
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~   82 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL   82 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence            455666666666666666666666665544      45666666666666666666666665542211            


Q ss_pred             ---HHhC-------------CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          188 ---EREG-------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       188 ---~~~~-------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                         ....             ..|....+++++|.++...|++++|+..|+++++..+
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  139 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL  139 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence               1001             1366788999999999999999999999999998653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.06  E-value=1.4e-09  Score=73.10  Aligned_cols=110  Identities=12%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +...+.......+.+.++..+.+++...|.                ....+..+|.++...|++++|+.+++++++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            333444444445667777778888776664                3447889999999999999999999999997544


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  207 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  207 (230)
                            ...++.++|.++...|++++|+++++++++..      |....++..++.+.
T Consensus        71 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~  116 (118)
T 1elw_A           71 ------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE------ANNPQLKEGLQNME  116 (118)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTCHHHHHHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC------CCCHHHHHHHHHhh
Confidence                  56789999999999999999999999998874      66678888888764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=2.9e-09  Score=75.08  Aligned_cols=88  Identities=16%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          123 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       123 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +|.+|...+..++|+.+|+++.+.        ..+.+++++|.+|..    .+++++|+++|+++.+.        ..+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--------g~~~   94 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------NDQD   94 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------TCHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--------CCHH
Confidence            899999999999999999999883        256889999999999    89999999999999754        3578


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948          199 AYGAIADCYTE----LGDLERAARFYDKYISR  226 (230)
Q Consensus       199 ~~~~lg~~y~~----~g~~~~A~~~~~~al~~  226 (230)
                      +++++|.+|..    .+|+++|+.+|++|.+.
T Consensus        95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            99999999999    99999999999999875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.8e-09  Score=74.88  Aligned_cols=115  Identities=14%  Similarity=0.160  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +...+.......+.+.++..|.+++...+.             +......+..+|.+|...|++++|+.++++++++.+.
T Consensus        31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           31 LRKEGNELFKCGDYGGALAAYTQALGLDAT-------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHccc-------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence            333344444445667777778888776654             1123567889999999999999999999999997554


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  209 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  209 (230)
                            ...+++++|.++...|++++|+.+|++++.+.      |....++..++.+...
T Consensus        98 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           98 ------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE------PKNKVFQEALRNISGP  145 (148)
T ss_dssp             ------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHCS
T ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHhh
Confidence                  46788999999999999999999999999885      6667778777776543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.03  E-value=3.4e-10  Score=89.54  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      +...+.......+.+.++..|.+++...|.                ....+.++|.+|...|++++|+..+++++++.+.
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~   70 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            444455556666778888889988887775                3557889999999999999999999999985443


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948          150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~  190 (230)
                            ...+++++|.++...|++++|+.+|++++++....
T Consensus        71 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           71 ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence                  67889999999999999999999999999987653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.03  E-value=1.9e-09  Score=85.40  Aligned_cols=67  Identities=9%  Similarity=-0.012  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      ...+++.+|..+...|++++|+..|.++++..+..    ....++.++|.++...|+.++|+..|++++..
T Consensus       218 ~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          218 DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----ADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            45578899999999999999999999999965541    13678999999999999999999999999764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.02  E-value=3e-09  Score=72.10  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....++.+|.+|...|++++|+.+|++++++.+.      ...+++++|.++...|++++|+.+|++++++....++   
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---   88 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD---   88 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc---
Confidence            3457889999999999999999999999997654      5678899999999999999999999999998754332   


Q ss_pred             HHHHHHHHHHHHHHcC
Q 026948          196 STEAYGAIADCYTELG  211 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g  211 (230)
                       ......+......++
T Consensus        89 -~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           89 -QQVVKELQVFLRRLA  103 (115)
T ss_dssp             -HHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhc
Confidence             334444544444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.02  E-value=6.6e-10  Score=79.72  Aligned_cols=85  Identities=14%  Similarity=0.208  Sum_probs=73.8

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHHHhc
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL----------EKAFTEFKAALELAQNV  150 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~----------~~A~~~~~~al~l~~~~  150 (230)
                      .+++.++..+.+++...|.                .+.++.++|.++...+++          ++|+..|++++++.++ 
T Consensus        16 ~~feeA~~~~~~Ai~l~P~----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-   78 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             hHHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-
Confidence            3667788888889988887                566888999999988775          5999999999998776 


Q ss_pred             CChHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHH
Q 026948          151 KDPIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQIS  187 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~-----------~~~~Ai~~~~~al~~~  187 (230)
                           ...+++++|.+|..+|           ++++|+.+|++|+++.
T Consensus        79 -----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           79 -----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence                 7889999999999885           8999999999999996

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.01  E-value=9.5e-09  Score=86.05  Aligned_cols=114  Identities=15%  Similarity=-0.028  Sum_probs=90.3

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAA  160 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~~  160 (230)
                      +++++..+++++.....        ....+....+.++.++|.+|..+|+|++|+.++++++.+..+.  .+++..+..+
T Consensus       314 ~~eA~~~~~~~L~i~~~--------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  385 (433)
T 3qww_A          314 PSELLEICELSQEKMSS--------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW  385 (433)
T ss_dssp             HHHHHHHHHHHHHHHTT--------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhC--------ccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            35555666666655433        1123455677788999999999999999999999999999863  4788899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHH
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIA  204 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg  204 (230)
                      ++||.+|..+|+|++|+.+|++|+++.+..  ++.|....+..+|.
T Consensus       386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            999999999999999999999999998874  45566666665553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=5.2e-09  Score=79.13  Aligned_cols=114  Identities=15%  Similarity=0.007  Sum_probs=97.4

Q ss_pred             HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHhcCChHH
Q 026948           80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ----DLEKAFTEFKAALELAQNVKDPIE  155 (230)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~l~~~~~~~~~  155 (230)
                      ..+.+.++..|+++...-                  ...+++.+|.+|.. +    ++++|+.+|+++.+.        .
T Consensus        31 ~~~~~~A~~~~~~a~~~g------------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--------g   83 (212)
T 3rjv_A           31 SGDYQKAEYWAQKAAAQG------------------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--------G   83 (212)
T ss_dssp             HTCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--------T
T ss_pred             CCCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--------C
Confidence            346677788888876532                  23478899999998 7    999999999999762        2


Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 026948          156 EKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYS--GSTEAYGAIADCYTE----LGDLERAARFYDKYIS  225 (230)
Q Consensus       156 ~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~--~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~  225 (230)
                      .+.+++++|.+|..    .+++++|+++|+++.+..      +  ..+.++++||.+|..    .+++++|+.+|+++++
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            56789999999998    999999999999999985      4  468899999999999    9999999999999988


Q ss_pred             h
Q 026948          226 R  226 (230)
Q Consensus       226 ~  226 (230)
                      .
T Consensus       158 ~  158 (212)
T 3rjv_A          158 L  158 (212)
T ss_dssp             T
T ss_pred             c
Confidence            6

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.01  E-value=2.7e-09  Score=68.70  Aligned_cols=69  Identities=28%  Similarity=0.466  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +....+++.+|.++...|++++|+.+|+++++..      |....++.++|.++...|++++|+.+|+++++..+
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3467789999999999999999999999999885      66788999999999999999999999999998754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.00  E-value=7.4e-09  Score=81.48  Aligned_cols=127  Identities=10%  Similarity=-0.007  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026948           77 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE  156 (230)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~  156 (230)
                      +....+++.+...+...+...|.                .. ..+.+|.+++..+++++|+.+++++...    .++...
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~----------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~  170 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSE----------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLA  170 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCH----------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCc----------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccH
Confidence            33334566666655555543322                45 7899999999999999999999866541    233334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..+++++|.++...|++++|+.+|++++.-    +..|. ..++++++|.++.++|+.++|...|++++...+
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            568999999999999999999999998632    12133 678999999999999999999999999987643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.00  E-value=5.5e-09  Score=71.86  Aligned_cols=112  Identities=15%  Similarity=0.057  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH
Q 026948           75 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  154 (230)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~  154 (230)
                      .......+.+.++..+.+.+...|.           ..  ....+++.+|.++...|++++|+.+|+++++..+..   .
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~-----------~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~   73 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPN-----------GV--YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---D   73 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSS-----------ST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---T
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCC-----------Cc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---c
Confidence            3344444666777777777776654           11  123478899999999999999999999999965542   2


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948          155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  208 (230)
Q Consensus       155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  208 (230)
                      ....+++.+|.++...|++++|+.+|+++++..      |....+......+..
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY------PGSDAARVAQERLQS  121 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCChHHHHHHHHHHH
Confidence            236789999999999999999999999998875      444444444444433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.00  E-value=6.4e-10  Score=73.27  Aligned_cols=89  Identities=19%  Similarity=0.284  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+..|..+...|++++|+..|+++++..+.      ... +++++|.++...|++++|+.+|++++++.      |....
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~   70 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN------PDSPA   70 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTSTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHH
Confidence            356789999999999999999999996544      456 89999999999999999999999999885      55555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++.+        +.+.+|..+|++++...+
T Consensus        71 ~~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           71 LQAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             HHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             HHHH--------HHHHHHHHHHHHHhccCc
Confidence            5533        556777777777665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.99  E-value=1e-09  Score=75.58  Aligned_cols=92  Identities=11%  Similarity=-0.023  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +.......+.+.++..+++++...|.                ...+++.+|.++...|++++|+..|++++++.+.    
T Consensus        24 g~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~----   83 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAVCQKEPE----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----   83 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence            34444445677788888888888776                4568899999999999999999999999997665    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                        ...++.++|.++...|++++|+.+|++++++.
T Consensus        84 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           84 --DIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence              56789999999999999999999999998875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.99  E-value=2.1e-09  Score=71.92  Aligned_cols=68  Identities=21%  Similarity=0.324  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ...++.++|.++...|+|++|+++|++++++.      |..+.++.++|.++..+|++++|+.+|++++++.++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            35678999999999999999999999999985      667899999999999999999999999999987653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.99  E-value=3.1e-09  Score=70.51  Aligned_cols=87  Identities=15%  Similarity=0.260  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ...+++.+|.+|...|++++|+.+|++++++.+.      ...++.++|.++...|++++|++.|++++++....++   
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~---   76 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT---   76 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC---
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc---
Confidence            3457889999999999999999999999997665      5668999999999999999999999999999865443   


Q ss_pred             HHHHHHHHHHHHHHcCC
Q 026948          196 STEAYGAIADCYTELGD  212 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~  212 (230)
                       ......+...+...+.
T Consensus        77 -~~~~~~l~~~l~~~~~   92 (100)
T 3ma5_A           77 -QKDLSELQDAKLKAEG   92 (100)
T ss_dssp             -HHHHHHHHHHHHHHHT
T ss_pred             -hhHHHHHHHHHHHccc
Confidence             3444555555544433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.97  E-value=6.6e-10  Score=81.18  Aligned_cols=91  Identities=18%  Similarity=0.247  Sum_probs=76.5

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Q 026948          127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  206 (230)
Q Consensus       127 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~  206 (230)
                      +...|++++|+..+.++++..+.      ...++..+|.++...|++++|+.+|++++.+.      |....++.++|.+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~   87 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------GENAELYAALATV   87 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------CSCHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHH
Confidence            34578999999999999986544      56789999999999999999999999999986      6678899999999


Q ss_pred             -HHHcCCH--HHHHHHHHHHHHhhhc
Q 026948          207 -YTELGDL--ERAARFYDKYISRLES  229 (230)
Q Consensus       207 -y~~~g~~--~~A~~~~~~al~~~~~  229 (230)
                       +...|++  ++|+.+++++++..+.
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~p~  113 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALDSN  113 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhCCC
Confidence             8899999  9999999999987543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.95  E-value=5.1e-09  Score=83.58  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=36.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          170 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       170 ~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .|++++|+..|+++++..      |..+.++.++|..+...|++++|+..|++++..
T Consensus       182 ~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            466666666666666654      555677777788777788888888888888774

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=3.5e-09  Score=84.52  Aligned_cols=100  Identities=9%  Similarity=-0.001  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ....+..+|..+...|++++|...|++++++.+.      ... ++.++|.++.+.|++++|+..|+++++..      |
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------p  165 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------R  165 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------T
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------C
Confidence            3334445555555555555555555555543221      111 44455555555555555555555554432      2


Q ss_pred             cHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q 026948          195 GSTEAYGAIADCYTE-LGDLERAARFYDKYISRL  227 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~  227 (230)
                      ....+|...+..... .|++++|+..|+++++..
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~  199 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY  199 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            223334333333221 455555555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.88  E-value=3.1e-08  Score=66.27  Aligned_cols=83  Identities=16%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      +..++.+|..++..|+|..|+.+|++|++..+.... ......++.++|.++.++|++++|+.++++++++.      |.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~------P~   78 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------PE   78 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CC
Confidence            556788999999999999999999999987766432 34578889999999999999999999999998885      66


Q ss_pred             HHHHHHHHHH
Q 026948          196 STEAYGAIAD  205 (230)
Q Consensus       196 ~~~~~~~lg~  205 (230)
                      ...+..|++.
T Consensus        79 ~~~~~~n~~~   88 (104)
T 2v5f_A           79 HQRANGNLKY   88 (104)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHhhHHH
Confidence            6777777763

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.85  E-value=4.7e-08  Score=65.34  Aligned_cols=71  Identities=13%  Similarity=0.110  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      -++.+|..++..|+|..|+.+|++|++....... ......++.++|.+|.++|++++|+.++++++.+.+.
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999876542 3467889999999999999999999999999987653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.81  E-value=2.7e-08  Score=65.29  Aligned_cols=63  Identities=24%  Similarity=0.285  Sum_probs=57.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE-AYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~-~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++.|..+...|++++|+..|+++++..      |.... ++.++|.+|..+|++++|+.+|++++++.+.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            568899999999999999999999885      66778 9999999999999999999999999987653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.74  E-value=1.1e-07  Score=80.60  Aligned_cols=94  Identities=20%  Similarity=0.218  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q 026948          118 LSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       118 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      .+++.+|.+|...|   ++++|+.+|+++.+.        ..+.+++++|.+|..    .+++++|+++|+++++.    
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----  396 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----  396 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----
Confidence            36778899888866   788999999998873        146789999999999    89999999999998764    


Q ss_pred             CCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 026948          191 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL  227 (230)
Q Consensus       191 ~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~  227 (230)
                          ..+.+++++|.+|..    .+++++|..+|+++++.-
T Consensus       397 ----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          397 ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence                247899999999999    899999999999999865

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.72  E-value=1.7e-07  Score=79.41  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q 026948          119 SRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE  190 (230)
Q Consensus       119 ~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~  190 (230)
                      +++.+|.+|..    .+++++|+.+|+++.+.        ....+++++|.+|..    .+++++|+++|+++++.    
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----  180 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----  180 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----
Confidence            45556666665    56666666666665541        134556666666666    56666666666666542    


Q ss_pred             CCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948          191 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  226 (230)
Q Consensus       191 ~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  226 (230)
                          +.+.+++++|.+|..    .+++++|+.+|+++.+.
T Consensus       181 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  216 (490)
T 2xm6_A          181 ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS  216 (490)
T ss_dssp             ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence                235566666776666    66777777777666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.65  E-value=1.5e-07  Score=81.54  Aligned_cols=118  Identities=9%  Similarity=0.016  Sum_probs=102.9

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHhcCC
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKD  152 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~~~~  152 (230)
                      .++++..+.+++..-|.                ...+++.++.++...|+          +++++..+.++++..++   
T Consensus        45 ~eeal~~~~~~l~~nP~----------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---  105 (567)
T 1dce_A           45 DESVLELTSQILGANPD----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---  105 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             CHHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---
Confidence            45667777788877776                56689999999998888          99999999999996665   


Q ss_pred             hHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 026948          153 PIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  228 (230)
Q Consensus       153 ~~~~~~~~~~lg~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~  228 (230)
                         ...++++.+.+....+  +++++++++.+++++.      +....+|...+.+....| .+++++++++++++...
T Consensus       106 ---~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p  175 (567)
T 1dce_A          106 ---SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (567)
T ss_dssp             ---CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             ---CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence               7889999999999999  7799999999999986      778999999999999999 99999999999987654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.64  E-value=1.8e-07  Score=80.99  Aligned_cols=119  Identities=8%  Similarity=-0.018  Sum_probs=103.2

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+.++..+.+++...|+                ...+++.++.+....+  +++++++++.+++++.++      ...++
T Consensus        89 ~~~eL~~~~~~l~~~pK----------------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW  146 (567)
T 1dce_A           89 VKAELGFLESCLRVNPK----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCW  146 (567)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc------cccHH
Confidence            56677777778777766                5668999999999999  779999999999997666      77889


Q ss_pred             HHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHH
Q 026948          161 RGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------------GDLERAARFYDKYIS  225 (230)
Q Consensus       161 ~~lg~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~  225 (230)
                      .+.|.+....| .++++++++.++++..      +....+|++.|.++..+              +.+++|++++++|+.
T Consensus       147 ~~R~~~l~~l~~~~~~el~~~~~~I~~~------p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          147 DYRRFVAAQAAVAPAEELAFTDSLITRN------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHTTTTTT------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHC------CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence            99999999999 9999999999998875      88899999999999885              668999999999998


Q ss_pred             hhhc
Q 026948          226 RLES  229 (230)
Q Consensus       226 ~~~~  229 (230)
                      +.+.
T Consensus       221 ~~P~  224 (567)
T 1dce_A          221 TDPN  224 (567)
T ss_dssp             HCSS
T ss_pred             hCCC
Confidence            7654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.64  E-value=6.7e-08  Score=64.08  Aligned_cols=66  Identities=18%  Similarity=0.224  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ..++..+|.++...|++++|+.+|+++++..      +....++.++|.++...|++++|+.+|+++++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            4567889999999999999999999999885      66788999999999999999999999999998754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.54  E-value=1e-06  Score=70.36  Aligned_cols=131  Identities=6%  Similarity=-0.099  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHH-HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH
Q 026948           70 VNEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALEL  146 (230)
Q Consensus        70 l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l  146 (230)
                      +.+.++...... ..+.++..+.+++...|.                ...+++.+|.+....|  ++++++..+.+++..
T Consensus        35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~----------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~   98 (306)
T 3dra_A           35 IMGLLLALMKAEEYSERALHITELGINELAS----------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD   98 (306)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH----------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence            333333333333 446677777888887776                5668999999999999  999999999999997


Q ss_pred             HHhcCChHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH--HHH
Q 026948          147 AQNVKDPIEEKKAARGLGASL----QRQ---GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE--RAA  217 (230)
Q Consensus       147 ~~~~~~~~~~~~~~~~lg~~~----~~~---~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~--~A~  217 (230)
                      .++      ...+.+..+.+.    ...   ++++++++.+.++++..      |....+|+..+.+...+|.++  +++
T Consensus        99 nPk------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~------pkny~aW~~R~~vl~~l~~~~~~~EL  166 (306)
T 3dra_A           99 NEK------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD------PKNHHVWSYRKWLVDTFDLHNDAKEL  166 (306)
T ss_dssp             CTT------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             Ccc------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcccChHHHH
Confidence            666      566677777777    666   79999999999999885      778999999999999999999  999


Q ss_pred             HHHHHHHHhhh
Q 026948          218 RFYDKYISRLE  228 (230)
Q Consensus       218 ~~~~~al~~~~  228 (230)
                      ++++++++.-.
T Consensus       167 ~~~~~~i~~d~  177 (306)
T 3dra_A          167 SFVDKVIDTDL  177 (306)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHHHhCC
Confidence            99999998644

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.54  E-value=4.8e-06  Score=59.57  Aligned_cols=104  Identities=19%  Similarity=0.172  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG----  191 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~----  191 (230)
                      ++..-....+..|.|+.|+-....++.+.+...+   ......++..+|++++..++|..|..+|++|++..+...    
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4555666778899999999999999998876444   566788999999999999999999999999998876421    


Q ss_pred             ---------------CcccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          192 ---------------EYSGSTEAYGAIADCYTELGDLERAARFYDK  222 (230)
Q Consensus       192 ---------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  222 (230)
                                     +.+...++.+.++.||.++|++++|+...+.
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                           1223457889999999999999999998764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.53  E-value=5.4e-07  Score=75.86  Aligned_cols=90  Identities=12%  Similarity=0.057  Sum_probs=62.0

Q ss_pred             HHHHHHHHH-H--HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH
Q 026948          118 LSRLKTGKN-F--LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQISER  189 (230)
Q Consensus       118 ~~~~~~g~~-~--~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-----~~~~Ai~~~~~al~~~~~  189 (230)
                      .+++.+|.+ +  ...+++++|+.+|+++.+.        ..+.+++++|.+|. .|     ++++|+.+|+++.     
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----  314 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----  314 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----
Confidence            356667776 3  4567777777777777651        14567777777776 44     7788888877765     


Q ss_pred             hCCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 026948          190 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYIS  225 (230)
Q Consensus       190 ~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~  225 (230)
                          ++.+.+++++|.+|..    ..++++|..+|+++.+
T Consensus       315 ----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          315 ----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             ----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             ----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence                2345777888877766    4478888888887765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.52  E-value=4.8e-07  Score=77.41  Aligned_cols=99  Identities=14%  Similarity=0.119  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---------------------------
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---------------------------  169 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---------------------------  169 (230)
                      ...+...|..+...|++++|...|++++++.+.  +.   ..++.++|..+.+                           
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--Cc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            345667777777888888888888887774322  11   1244444444444                           


Q ss_pred             --------cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          170 --------QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       170 --------~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                              .|++++|...|+++++..      |..+.++..++..+...|+.++|...|++++..
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence                    455555555555555443      444556666666666666666666666666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.47  E-value=7.6e-07  Score=74.94  Aligned_cols=109  Identities=13%  Similarity=0.096  Sum_probs=73.4

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN----QDLEKAFTEFKAALELAQNVKDPIEEK  157 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~l~~~~~~~~~~~  157 (230)
                      +.+.++..|+++....+.                .+..++.+|.+|...    +++++|+.+|+++.   +.      .+
T Consensus       194 ~~~~A~~~~~~aa~~g~~----------------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g------~~  248 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTV----------------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG------YP  248 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCS----------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG------ST
T ss_pred             cHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC------CH
Confidence            666777777777765544                233446677777554    67777777777765   22      45


Q ss_pred             HHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 026948          158 KAARGLGAS-L--QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-----DLERAARFYDKYI  224 (230)
Q Consensus       158 ~~~~~lg~~-~--~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-----~~~~A~~~~~~al  224 (230)
                      .+++++|.+ +  ...+++++|+++|+++.+.        +.+.+++++|.+|. .|     ++++|+.+|+++.
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            667777777 3  4567777788877777532        35667777777777 55     7777777777765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=3.3e-07  Score=72.10  Aligned_cols=138  Identities=11%  Similarity=-0.029  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhccccccCCCCCc--ccc--c-CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 026948           76 QINAALRRQAKIESYAPSLSYAPVGSRIPED--EVI--V-DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  150 (230)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~--~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  150 (230)
                      .+....+...++..+++.+...|........  -.+  + -+-...-...+..+..+...|+|++|.+.+...+.     
T Consensus        56 ~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----  130 (282)
T 4f3v_A           56 TLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----  130 (282)
T ss_dssp             HHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----
Confidence            3333345566667777777776653211111  000  0 00111222456678999999999999999987765     


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                       ..+... ..+.+|.++.+.+++++|+.+|+++....     ++. ...+++++|.++..+|++++|+.+|++++.
T Consensus       131 -~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          131 -AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-----DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             -TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence             223345 88999999999999999999999764431     122 246899999999999999999999999973

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.44  E-value=5.1e-07  Score=77.26  Aligned_cols=98  Identities=11%  Similarity=0.073  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          117 LLSRLKTGKNFLR-------NQDLE-------KAFTEFKAALE-LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS  181 (230)
Q Consensus       117 ~~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~  181 (230)
                      ...++..|..+..       .|+++       +|...|+++++ +.+.      ....+..+|..+...|++++|...|+
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~------~~~l~~~~~~~~~~~g~~~~A~~~~~  345 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK------NMLLYFAYADYEESRMKYEKVHSIYN  345 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4567788888875       79987       88999999986 4333      56788899999999999999999999


Q ss_pred             HHHHHHHHhCCcccH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          182 MVLQISEREGEYSGS-TEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       182 ~al~~~~~~~~~~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      +++++.      |.. ..+|.+.|.++...|++++|+..|++|++.
T Consensus       346 ~al~~~------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          346 RLLAIE------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             HHHHSS------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhCcc------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999863      433 368999999888888888888888888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.36  E-value=1.2e-05  Score=64.69  Aligned_cols=120  Identities=8%  Similarity=-0.008  Sum_probs=100.2

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+..+..+...+...|+                ...++..++.+....+  ++++++.++.++++..++      +..+.
T Consensus        90 l~~EL~~~~~~L~~~PK----------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW  147 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCW  147 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHH
Confidence            34455556666666665                4568999999999988  499999999999997666      77888


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHH
Q 026948          161 RGLGASLQRQGK-YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------------GDLERAARFYDKYIS  225 (230)
Q Consensus       161 ~~lg~~~~~~~~-~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~  225 (230)
                      ++.+.+....|. ++++++++.++++..      |.+..+|++.+.+...+              +.++++++++++++.
T Consensus       148 ~~R~~vl~~l~~~~~eel~~~~~~I~~~------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~  221 (331)
T 3dss_A          148 DYRRFVAAQAAVAPAEELAFTDSLITRN------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  221 (331)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence            899999999998 699999999999885      88899999999999887              568999999999998


Q ss_pred             hhhcC
Q 026948          226 RLESD  230 (230)
Q Consensus       226 ~~~~~  230 (230)
                      ..+.|
T Consensus       222 ~~P~d  226 (331)
T 3dss_A          222 TDPND  226 (331)
T ss_dssp             HSTTC
T ss_pred             hCCCC
Confidence            76653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.34  E-value=5.7e-06  Score=77.27  Aligned_cols=97  Identities=12%  Similarity=0.124  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE------  190 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~------  190 (230)
                      ..+++.+|..+...|++++|+++|.++-           ....+..+|.++.+.|+|++|+++|+.|.+..+..      
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKAd-----------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKAD-----------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence            3478899999999999999999998761           46678889999999999999999998877544110      


Q ss_pred             ----------------CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          191 ----------------GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       191 ----------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                                      -..+ ....+.++|..+...|+|++|..+|+++-.
T Consensus      1174 afaYAKl~rleele~fI~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~n 1223 (1630)
T 1xi4_A         1174 IFALAKTNRLAELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN 1223 (1630)
T ss_pred             HHHHHhhcCHHHHHHHHhCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhhH
Confidence                            0112 223566799999999999999999988754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.33  E-value=3.5e-06  Score=59.80  Aligned_cols=69  Identities=14%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~---~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...+.+++|.++.+.+   +.++++..++..++..    .+....++++++|..|.++|+|++|+.++++++++-+
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            5577888888888877   6668998888887752    1125678888999999999999999999998888654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.31  E-value=3.1e-06  Score=55.18  Aligned_cols=64  Identities=14%  Similarity=-0.003  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          157 KKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~---~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      +..+..+|.+++..++   .++|...+++++++.      |..+.++..+|..+...|+|++|+.+|+++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455556666654444   566777777766664      666666666677777777777777777666653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.29  E-value=4.4e-06  Score=66.66  Aligned_cols=101  Identities=8%  Similarity=-0.029  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHH----HhC---CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHH
Q 026948          117 LLSRLKTGKNF----LRN---QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--EAIKYHSMVLQIS  187 (230)
Q Consensus       117 ~~~~~~~g~~~----~~~---g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~Ai~~~~~al~~~  187 (230)
                      ..+++.++.+.    ...   +++++++..+.++++..++      ...+.++.+.+....|.++  ++++++.++++..
T Consensus       103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A          103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence            44678888887    666   7899999999999996665      7788899999999999998  9999999999885


Q ss_pred             HHhCCcccHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhhc
Q 026948          188 EREGEYSGSTEAYGAIADCYTELGD------LERAARFYDKYISRLES  229 (230)
Q Consensus       188 ~~~~~~~~~~~~~~~lg~~y~~~g~------~~~A~~~~~~al~~~~~  229 (230)
                            +.+..+|++.+.+....++      ++++++++++++...+.
T Consensus       177 ------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~  218 (306)
T 3dra_A          177 ------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ  218 (306)
T ss_dssp             ------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS
T ss_pred             ------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC
Confidence                  7788999999999999888      99999999999986554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.28  E-value=1.4e-05  Score=64.44  Aligned_cols=102  Identities=9%  Similarity=-0.013  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMV  183 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~Ai~~~~~a  183 (230)
                      ...+++.++.+....++          +++++.++.+++...++      ...+.++.+.+....+  +++++++++.++
T Consensus        63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~  136 (331)
T 3dss_A           63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARF  136 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence            45578888888776655          67888999999886555      7788899999999988  499999999999


Q ss_pred             HHHHHHhCCcccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhc
Q 026948          184 LQISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISRLES  229 (230)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~  229 (230)
                      ++..      |.+..+|...+.+....|. +++++++++++++..+.
T Consensus       137 l~~d------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~  177 (331)
T 3dss_A          137 LEAD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  177 (331)
T ss_dssp             HHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred             HHhC------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence            9985      8889999999999999999 69999999999986543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.27  E-value=1.8e-06  Score=60.58  Aligned_cols=78  Identities=27%  Similarity=0.339  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH-
Q 026948          131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-  209 (230)
Q Consensus       131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-  209 (230)
                      +++++|+.+|+++.+.-        .+.+.  +|.+|...+.+++|+++|+++.+.        +.+.+++++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~g--------~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--------EMFGC--LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--------CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcCC--------CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcC
Confidence            47899999999998732        12233  999999999999999999999764        357899999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHHh
Q 026948          210 ---LGDLERAARFYDKYISR  226 (230)
Q Consensus       210 ---~g~~~~A~~~~~~al~~  226 (230)
                         .+|+++|+.+|+++.+.
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHHHHcC
Confidence               99999999999999864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.22  E-value=1.3e-05  Score=65.06  Aligned_cols=124  Identities=13%  Similarity=0.023  Sum_probs=85.0

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEK  157 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~  157 (230)
                      ....++..+.+++...|.                .+.++-.++.+|..    ...-.........++.........+..+
T Consensus       214 ~~~~A~~l~e~Al~lDP~----------------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a  277 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPE----------------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS  277 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred             HHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence            345667778888887775                23333333444321    1111222233344444333333444567


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .++..++..+...|++++|+.++++|+.+.      + ...+|..+|.++...|++++|++.|++|+.+-+
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln------~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLE------M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            788889988988999999999999999994      3 356788999999999999999999999998754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.20  E-value=4.4e-06  Score=67.72  Aligned_cols=119  Identities=9%  Similarity=0.005  Sum_probs=101.2

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      ..+.++..+.+++...|.                ...+++.++.+....| ++++++..+.+++...++      ...+.
T Consensus        69 ~se~AL~lt~~~L~~nP~----------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW  126 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPA----------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVW  126 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHH
T ss_pred             CCHHHHHHHHHHHHhCch----------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHH
Confidence            445677777778877776                5568999999999999 599999999999985554      77888


Q ss_pred             HHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhh
Q 026948          161 RGLGASLQRQ-G-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE--------RAARFYDKYISRLE  228 (230)
Q Consensus       161 ~~lg~~~~~~-~-~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~--------~A~~~~~~al~~~~  228 (230)
                      +..+.+.... + +++++++++.++++..      |.+..+|...+.+....|.++        +++++++++++.-.
T Consensus       127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~d------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp  198 (349)
T 3q7a_A          127 HHRLLLLDRISPQDPVSEIEYIHGSLLPD------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG  198 (349)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHTSSC------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence            9999999887 7 9999999999998764      778899999999999999888        99999999998654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.19  E-value=2.1e-05  Score=73.56  Aligned_cols=94  Identities=17%  Similarity=0.142  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-------------CChHH--------HHHHHHHHHHHHHHcCCHHHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------------KDPIE--------EKKAARGLGASLQRQGKYREA  176 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------------~~~~~--------~~~~~~~lg~~~~~~~~~~~A  176 (230)
                      ..+...|.++...|+|++|+++|..+.+..+..             +....        ....+.++|..+...|+|++|
T Consensus      1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A         1135 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHH
Confidence            367789999999999999999998877543110             11011        122467899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          177 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       177 i~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      +.+|.++              ..|..+|.++.++|++++|++.+++|.+
T Consensus      1215 ~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1215 KLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            9999995              3688999999999999999999999854

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.15  E-value=1.1e-05  Score=52.48  Aligned_cols=80  Identities=11%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          117 LLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ...+..+|..++..++   .++|...+++++++.+.      ..+++..+|..++..|+|++|+.+++++++....   .
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~---~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP---N   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT---T
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C
Confidence            3456777888876555   79999999999997766      8899999999999999999999999998776422   3


Q ss_pred             ccHHHHHHHHHH
Q 026948          194 SGSTEAYGAIAD  205 (230)
Q Consensus       194 ~~~~~~~~~lg~  205 (230)
                      +.....-..+..
T Consensus        77 ~~~~~i~~~I~~   88 (93)
T 3bee_A           77 LDRVTIIESINK   88 (93)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH
Confidence            344444444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.03  E-value=9.4e-06  Score=65.76  Aligned_cols=119  Identities=8%  Similarity=-0.054  Sum_probs=96.9

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-Q-DLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g-~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      .+.++..+.+.+...|+                ...+++.++.+.... + ++++++.++.++++..++      ...+.
T Consensus       105 l~eEL~~~~~~L~~nPK----------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk------Ny~AW  162 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLK----------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK------NYHTW  162 (349)
T ss_dssp             HHHHHHHHHHHHHTTCC----------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------CHHHH
Confidence            34455555555555554                455788999998887 7 899999999999985444      67788


Q ss_pred             HHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHH
Q 026948          161 RGLGASLQRQGKYR--------EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYIS  225 (230)
Q Consensus       161 ~~lg~~~~~~~~~~--------~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-------~~~A~~~~~~al~  225 (230)
                      +..+.+....|.++        +++++++++++..      +.+..+|++.+.+...+++       ++++++++++++.
T Consensus       163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~  236 (349)
T 3q7a_A          163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH  236 (349)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence            88888888888887        9999999999985      7889999999999999987       7999999999998


Q ss_pred             hhhc
Q 026948          226 RLES  229 (230)
Q Consensus       226 ~~~~  229 (230)
                      ..+.
T Consensus       237 ~~P~  240 (349)
T 3q7a_A          237 LIPH  240 (349)
T ss_dssp             HCTT
T ss_pred             hCCC
Confidence            7654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.01  E-value=3.2e-05  Score=60.66  Aligned_cols=103  Identities=13%  Similarity=0.061  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHh---C--CC------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 026948          116 ELLSRLKTGKNFLR---N--QD------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----GKYREAIKY  179 (230)
Q Consensus       116 ~~~~~~~~g~~~~~---~--g~------~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-----~~~~~Ai~~  179 (230)
                      .+..+++.|.....   .  |.      .+.|...+++++++.++    .....++..+|..|...     |+.++|..+
T Consensus       151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            45566666665532   2  32      56778888899987544    44677899999999995     999999999


Q ss_pred             HHHHHHHHHHhCCccc-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhh
Q 026948          180 HSMVLQISEREGEYSG-STEAYGAIADCYTE-LGDLERAARFYDKYISRLE  228 (230)
Q Consensus       180 ~~~al~~~~~~~~~~~-~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~  228 (230)
                      |++|+++.      |+ ...+++..|..+.. .|+++.|..+++++++.-.
T Consensus       227 ferAL~Ln------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          227 FEHLTRYC------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP  271 (301)
T ss_dssp             HHHHHHHC------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHhC------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence            99999996      64 48899999999987 5999999999999998643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.00  E-value=0.00011  Score=52.14  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          117 LLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      ..+.++.|+++....   +.++++..++..++..    .+.....+++++|..+++.|+|++|.+++++++++.      
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie------  101 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE------  101 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------
Confidence            347888899999988   6679999999988832    133578899999999999999999999999999996      


Q ss_pred             ccHHHHHHH
Q 026948          194 SGSTEAYGA  202 (230)
Q Consensus       194 ~~~~~~~~~  202 (230)
                      |....+...
T Consensus       102 P~n~QA~~L  110 (152)
T 1pc2_A          102 PQNNQAKEL  110 (152)
T ss_dssp             TTCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            655554443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.92  E-value=7.4e-06  Score=68.25  Aligned_cols=94  Identities=11%  Similarity=0.155  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH-------
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS--ER-------  189 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~--~~-------  189 (230)
                      ++..+|..++..|+|++|..+|.++              ..+..+|.++.+.|+|++|++.++++....  +.       
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD  189 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            7888999999999999999999865              357788999999999999999999983221  00       


Q ss_pred             hC----------CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          190 EG----------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       190 ~~----------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .+          .-...++-...+...|...|++++|+.++++++..
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            00          00011122233557899999999999999998753

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.88  E-value=0.00059  Score=56.13  Aligned_cols=108  Identities=6%  Similarity=-0.105  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcccHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTE  198 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~-~~~~~~~~  198 (230)
                      ...+|..|+..|+|.+|...+.+.++..++..+.......+..-..+|...+++.++...+.+|....... .++.-.+.
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            34789999999999999999999999998888888888889999999999999999999999998887655 33334555


Q ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYT-ELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~-~~g~~~~A~~~~~~al~~~  227 (230)
                      ....-|..+. ..++|..|..+|-++..-+
T Consensus       182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          182 LDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            6677789999 8999999999998887654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.86  E-value=0.00027  Score=56.19  Aligned_cols=123  Identities=10%  Similarity=-0.040  Sum_probs=80.5

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      ++.+.++..+.+.+...+.              .....+....+.++..+|+.+.|...+++..+..+..-.........
T Consensus       114 g~~eeAL~~l~~~i~~~~~--------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEA--------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCC--------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            3556666666665544331              12455677889999999999999999998776422000001122233


Q ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCccc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          161 RGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       161 ~~lg~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ..-|.+....|  ++++|...|++..+..      |.  ....+++   ++..+|++++|...+++.++.
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~------p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTF------PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTS------CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhC------CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence            33354566666  9999999999964432      32  2344555   899999999999999977665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.83  E-value=0.00042  Score=49.56  Aligned_cols=89  Identities=10%  Similarity=0.160  Sum_probs=66.7

Q ss_pred             ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-------------------HHHHHHHHHHHHHHHcCC
Q 026948          112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-------------------EEKKAARGLGASLQRQGK  172 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~-------------------~~~~~~~~lg~~~~~~~~  172 (230)
                      .....+.++...|..++.+++|.+|...|++++++.+.....+                   ...+..+.++.|+...++
T Consensus        58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~  137 (167)
T 3ffl_A           58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ  137 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC
Confidence            3455777888999999999999999999999999887543222                   123678899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 026948          173 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  207 (230)
Q Consensus       173 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  207 (230)
                      +++|+..++..   .    .....+.+...||..|
T Consensus       138 ~~~Ai~~Le~I---p----~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          138 DKDAIAILDGI---P----SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHHHTS---C----GGGCCHHHHHHHHHHC
T ss_pred             HHHHHHHHhcC---C----chhcCHHHHHHHHHHh
Confidence            99999998762   1    1123455666677665

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.78  E-value=0.00023  Score=56.67  Aligned_cols=100  Identities=6%  Similarity=-0.064  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc---
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG---  195 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~---  195 (230)
                      ++..+|.++...|++++|+.++.+++...+    ......++.-++.++...|+++.|.+.+++..+..      ++   
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~------~d~~~  171 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI------EDTVS  171 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------ccccc
Confidence            456899999999999999999999876211    12467788888999999999999999999986663      31   


Q ss_pred             -HHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHhhh
Q 026948          196 -STEAYGAI--ADCYTELG--DLERAARFYDKYISRLE  228 (230)
Q Consensus       196 -~~~~~~~l--g~~y~~~g--~~~~A~~~~~~al~~~~  228 (230)
                       .-....++  |++....|  ++++|...|++..+.++
T Consensus       172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred             cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence             22344455  44466667  99999999999876553

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.47  E-value=1.9e-05  Score=65.79  Aligned_cols=81  Identities=15%  Similarity=0.107  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ....++.+|.+.|++.++.++++.           + ...++.++|..+...|+|++|+.+|.++              .
T Consensus        96 i~~~Li~~Y~Klg~l~e~e~f~~~-----------p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~  149 (449)
T 1b89_A           96 VETELIFALAKTNRLAELEEFING-----------P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------S  149 (449)
T ss_dssp             -------------CHHHHTTTTTC-----------C-----------------CTTTHHHHHHHT--------------T
T ss_pred             hHHHHHHHHHHhCCHHHHHHHHcC-----------C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------------h
Confidence            455667777777888777766642           1 2238999999999999999999999975              3


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .|..+|.++..+|+|++|.+.|+++.+
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~~  176 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKANS  176 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcCC
Confidence            688999999999999999999999843

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.18  E-value=0.0012  Score=45.04  Aligned_cols=69  Identities=13%  Similarity=0.050  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 EKKAARGLGASLQRQGKYRE---AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~---Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...+.+++|.++.+..+...   +|..++..++-.    ++...-++++.+|..+.++|+|++|..+.+..|++-+
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP  105 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  105 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            44667777777777766665   777776654321    1124667788888888888888888888888777543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.022  Score=47.66  Aligned_cols=113  Identities=10%  Similarity=0.002  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ..+.....++.+|...|++.+|.........-.....+.......+......+...+|+.+|...++++..........+
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            34555678999999999999999999887765555567777888888889999999999999999999854333333323


Q ss_pred             -cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          195 -GSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       195 -~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                       .....+...|..+...++|.+|-.+|..+...+
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence             345667788999999999999999999887654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.03  E-value=0.0015  Score=51.25  Aligned_cols=74  Identities=15%  Similarity=0.008  Sum_probs=61.5

Q ss_pred             ccCccHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 026948          109 IVDPKKEELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSM  182 (230)
Q Consensus       109 ~~~~~~~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~Ai~~~~~  182 (230)
                      .+++...+..++..+|..|...     |+.++|..+|++++++.+..     ....++..|..++. .|++++|.+++++
T Consensus       191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----~id~~v~YA~~l~~~~gd~~~a~~~L~k  265 (301)
T 3u64_A          191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----DPDHHITYADALCIPLNNRAGFDEALDR  265 (301)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----CSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred             HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            4466666777888999999985     99999999999999987651     25667788888887 5999999999999


Q ss_pred             HHHHH
Q 026948          183 VLQIS  187 (230)
Q Consensus       183 al~~~  187 (230)
                      ++...
T Consensus       266 AL~a~  270 (301)
T 3u64_A          266 ALAID  270 (301)
T ss_dssp             HHHCC
T ss_pred             HHcCC
Confidence            99875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.02  E-value=0.0036  Score=50.88  Aligned_cols=106  Identities=11%  Similarity=0.008  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----GKYREAIKYHSMVLQISE  188 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----~~~~~Ai~~~~~al~~~~  188 (230)
                      .++.++..|..+...++   +.+|+.+|++++++.+.      .+.++..++.++...    ........-..+++....
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            44556666766665544   57999999999997766      556666666665421    111223333444444333


Q ss_pred             HhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          189 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       189 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .....+..+.++..+|..+...|++++|+.++++|+.+.
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln  307 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE  307 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            333446678899999999999999999999999999874

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.0063  Score=50.74  Aligned_cols=106  Identities=9%  Similarity=0.048  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      +...+|..|...|++++|...|.+........+.   ....+...-.++...+++..+..+..++-.+....++......
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            4567999999999999999999998876544322   4566777778889999999999999999887766665555556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ....-|..+...++|..|..+|-.+...+
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            66777888999999999999998876544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.88  E-value=0.051  Score=37.00  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhCCCHHH---HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEK---AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~---A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.++.|+.+....+...   ++..++..++   . ..+.....+++.+|..+++.|+|++|..+++..+++.
T Consensus        37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLP---K-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---T-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            67788888888877665   6666666554   1 1234678899999999999999999999999999985

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.71  E-value=0.19  Score=41.20  Aligned_cols=98  Identities=15%  Similarity=0.087  Sum_probs=79.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948          130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  209 (230)
Q Consensus       130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  209 (230)
                      -+..+.-++...+.++-+++-.-.......-..+|..|+..|+|.+|.+.+.+.++-.++.++.....+++......|..
T Consensus        72 ~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~  151 (394)
T 3txn_A           72 DAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA  151 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            35666667777777776665333333444566899999999999999999999988887777777888899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhh
Q 026948          210 LGDLERAARFYDKYISRL  227 (230)
Q Consensus       210 ~g~~~~A~~~~~~al~~~  227 (230)
                      ++++.++...|.+|....
T Consensus       152 ~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A          152 LSNLPKARAALTSARTTA  169 (394)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhh
Confidence            999999999999997765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.58  E-value=0.034  Score=49.10  Aligned_cols=106  Identities=8%  Similarity=0.002  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh--------cCC--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN--------VKD--------PIEEKKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--------~~~--------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      .++..+......|++++|...|++++.....        .+.        .......+...+....+.|+.+.|...|.+
T Consensus       380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~  459 (679)
T 4e6h_A          380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK  459 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556677778899999999999999985421        111        011333555666666778888899999998


Q ss_pred             HHHHHHHhCCcccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhc
Q 026948          183 VLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLES  229 (230)
Q Consensus       183 al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~  229 (230)
                      |++..     .+.....|...+......+ +++.|...|+++++.++.
T Consensus       460 A~~~~-----~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          460 CRRLK-----KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHTG-----GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHhc-----CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            87651     1222345555566555544 478888888888876653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.49  E-value=0.032  Score=38.23  Aligned_cols=66  Identities=15%  Similarity=0.123  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          157 KKAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~---~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..+.++++.++.+..+.   .++|..++..++..     +...-++++.+|..+.++|+|++|..+.+..+++-
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            45666666666665543   35777776655432     23466778888888888888888888888777654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.35  E-value=0.05  Score=37.78  Aligned_cols=65  Identities=14%  Similarity=0.111  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          157 KKAARGLGASLQRQGKYR---EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~---~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      ..+.++++.++.+..+..   ++|..++..++.     ++...-++++.+|..+.++|+|++|..+.+..|++
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            344555555555544332   355555554432     11234556666666666666666666666665554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.24  E-value=0.12  Score=37.16  Aligned_cols=96  Identities=14%  Similarity=0.114  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH--------
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL--QISER--------  189 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al--~~~~~--------  189 (230)
                      .+.++...+-.|.|..++..+.+.-           .+.+.+.-..|+...++|..|+..+++.+  ++.+.        
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~~lN-----------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLHKLN-----------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCC-----------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             HhhhhhhhhhcchHhHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            3446778888999988877654322           24455666779999999999999999987  22211        


Q ss_pred             --hCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          190 --EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       190 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                        .-++.+..--+..+|......|+.++|+.+|.+...+
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence              1122344456778899999999999999999887654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.16  E-value=0.038  Score=48.78  Aligned_cols=103  Identities=11%  Similarity=0.004  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Q 026948          118 LSRLKTGKNFLRNQDLEKAF-TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-------  189 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~-~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~-------  189 (230)
                      ..++..+......|+.++|. ..|.+|+...+.      ....+...+......|++++|.+.|++++.....       
T Consensus       344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~  417 (679)
T 4e6h_A          344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME  417 (679)
T ss_dssp             HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            35667777777888888997 999999985543      3345666778888899999999999999976311       


Q ss_pred             -hCC--------cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          190 -EGE--------YSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       190 -~~~--------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                       .+.        ......+|...+......|+.+.|...|.+|++.
T Consensus       418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             010        0024557888888888999999999999999875

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.08  E-value=0.021  Score=48.37  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      .+++..+|++.+....++.|..+|.+|..+.      |.....|+.||.+....|+.-+|..+|-+++..
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhC------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            3567889999999999999999999999986      778889999999999999999999999998753

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.93  E-value=0.095  Score=42.94  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-----cCC-hH----------HHHHHHHHHHHHHHHcCCHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----VKD-PI----------EEKKAARGLGASLQRQGKYREAIKY  179 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----~~~-~~----------~~~~~~~~lg~~~~~~~~~~~Ai~~  179 (230)
                      ........|......|+.+.|...+.+++.++..     ..+ .+          ....+...++..+...|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3444455566666789999999999999987642     111 11          1123455677788899999999999


Q ss_pred             HHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          180 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       180 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      +.+.+...      |.....+..+..++...|+..+|+..|++.-+..
T Consensus       194 l~~~~~~~------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L  235 (388)
T 2ff4_A          194 LEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  235 (388)
T ss_dssp             HHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99998885      7788899999999999999999999999987654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.91  E-value=0.094  Score=44.53  Aligned_cols=97  Identities=9%  Similarity=0.058  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ++..+-..|...|++++|...+.+..+.    +-.+ ....|..+-..+.+.|+.++|.+.|++-.+.    +-.| ...
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----G~~P-d~~  176 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVES----EVVP-EEP  176 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCCC-CHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC-CHH
Confidence            5666777888899999999999886651    1111 3456777778899999999999999985432    2333 567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      +|..+-.+|.+.|+.++|.+.+++.-+
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            899999999999999999999988754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.90  E-value=0.028  Score=47.69  Aligned_cols=79  Identities=11%  Similarity=0.099  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+..+|.+.+....++.|..+|.+|..+.+.      ....++.||.+....|+.-+|+-+|-+++...      ...+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~------~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~------~Pf~~  221 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK------FPFPA  221 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS------BCCHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC------CCchHHHHHHHHhcccccHHHHHHHHHHHhcC------CCChh
Confidence            4558999999999999999999999998877      77889999999999999999999999998653      33566


Q ss_pred             HHHHHHHHHHH
Q 026948          199 AYGAIADCYTE  209 (230)
Q Consensus       199 ~~~~lg~~y~~  209 (230)
                      +..|+...+..
T Consensus       222 a~~nL~~~f~~  232 (497)
T 1ya0_A          222 ASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            67777666654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.1  Score=46.49  Aligned_cols=57  Identities=18%  Similarity=0.185  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      .+..-+..+..+|+|+-|+++.++|+...      |....+|+.|+.+|..+|+|+.|+-..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a------PseF~tW~~La~vYi~l~d~e~ALLtLN  395 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELA------LDSFESWYNLARCHIKKEEYEKALFAIN  395 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcC------chhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence            45555677778999999999999999996      8899999999999999999999997654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.80  E-value=0.2  Score=34.28  Aligned_cols=64  Identities=13%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~---~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.++.|+.+....+.   .+++..++..++.     ++.....+++.++..+.+.|+|++|.++.+..+++.
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            566777777766554   4677777766652     233478899999999999999999999999998875

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.50  E-value=0.24  Score=34.39  Aligned_cols=64  Identities=13%  Similarity=0.218  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhCCCHH---HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLE---KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~---~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      +.++.|+++....+.+   +++..++..+.   .  ++.....+++.++..+++.|+|++|.++.+..+++.
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---H--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            6777788887776554   56667776665   2  222467889999999999999999999999999885

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.41  E-value=0.11  Score=36.44  Aligned_cols=102  Identities=14%  Similarity=0.082  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhCCCH------HHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          120 RLKTGKNFLRNQDL------EKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       120 ~~~~g~~~~~~g~~------~~A~~~~~~al~l~~~~~--~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      +..........|+.      ++-.+.|++|+.-.+-..  .-......+...+. +...+|.++|.+.|+.++.+.    
T Consensus        16 W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~h----   90 (161)
T 4h7y_A           16 WLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANC----   90 (161)
T ss_dssp             HHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHh----
Confidence            44333444444777      788888999887554321  11112223333332 356689999999999999873    


Q ss_pred             CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       192 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                        ...+.+|...|.--..+|+.++|...+.+|+.+..
T Consensus        91 --KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           91 --KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             --TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence              23488999999999999999999999999998654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.10  E-value=1.2  Score=37.04  Aligned_cols=83  Identities=14%  Similarity=0.028  Sum_probs=66.5

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~  189 (230)
                      .+....+..++.....|...+|+.+|...+.++.... ....++......+...|..+...++|.+|-.+|..++.....
T Consensus       171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            4455667777888899999999999999999986544 444455667888888999999999999999999999887655


Q ss_pred             hCCc
Q 026948          190 EGEY  193 (230)
Q Consensus       190 ~~~~  193 (230)
                      .++.
T Consensus       251 ~~d~  254 (445)
T 4b4t_P          251 KSDE  254 (445)
T ss_dssp             HSCH
T ss_pred             cCCH
Confidence            4443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.51  E-value=1.3  Score=35.03  Aligned_cols=102  Identities=12%  Similarity=-0.014  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCC-cccH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGE-YSGS  196 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~Ai~~~~~al~~~~~~~~-~~~~  196 (230)
                      .++.-+..+.+.|++..|.+...-.++.+.+.+.... ......+..++..... -.+=.+..+++++...+.++ ..+.
T Consensus        55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gd  133 (312)
T 2wpv_A           55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGD  133 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCC
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCC
Confidence            3445566677788888888876666776666443332 2234445555444221 12346777888888877655 5578


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          197 TEAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      +..+..+|..|.+.|++.+|..+|-
T Consensus       134 p~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          134 PYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            8999999999999999999999884

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.37  E-value=0.62  Score=39.36  Aligned_cols=104  Identities=7%  Similarity=-0.157  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh----------------------------------HHHHHHHHH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------------------------------IEEKKAARG  162 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~----------------------------------~~~~~~~~~  162 (230)
                      ...++..+..+...|+.++|...|++|+.. +....-                                  ......+..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            335666777788899999999999999987 542100                                  001112233


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  228 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~  228 (230)
                      .+....+.++.+.|...|++| ..      ++.....|...+......+ +.+.|...|+++++.++
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GN------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TT------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hC------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence            333344567788888888888 21      1223456666666655555 69999999999987654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.32  E-value=0.091  Score=44.53  Aligned_cols=108  Identities=9%  Similarity=-0.027  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhCCCHHHHH----------HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAF----------TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  188 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~----------~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~  188 (230)
                      .++..+..+...|+.....          ..+..+++.+--..|....+..+..+-..|...+.|++|.....++. +.+
T Consensus       183 ~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~  261 (523)
T 4b4t_S          183 LWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-YPH  261 (523)
T ss_dssp             --------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCT
T ss_pred             HHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCc
Confidence            3444455555556554422          12333443333334566677778888899999999999999999873 211


Q ss_pred             HhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          189 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       189 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ...........++.+|.++.-+++|.+|.+++..|+...
T Consensus       262 ~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          262 TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            111122346668889999999999999999999998754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.85  E-value=0.21  Score=41.49  Aligned_cols=70  Identities=17%  Similarity=0.021  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++..+|..|.+.|++++|.+.|.+......   ......+.+..+-.++...+|+..+..+++++-....
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~  199 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE  199 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence            456788999999999999999999999866542   2345678899999999999999999999999977654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.26  E-value=4.4  Score=35.74  Aligned_cols=96  Identities=10%  Similarity=-0.033  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH------HHHHhcCChHHHHHH---------HHHHHHHHHHcCCHHHHHHHHH--
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAAL------ELAQNVKDPIEEKKA---------ARGLGASLQRQGKYREAIKYHS--  181 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al------~l~~~~~~~~~~~~~---------~~~lg~~~~~~~~~~~Ai~~~~--  181 (230)
                      .+..+|..+...++++.|+.+|.++-      .++...++.......         +.....++...|++++|++.|.  
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence            67789999999999999999987753      233333333321111         1112335666788888887765  


Q ss_pred             ----HHHHHHHHhCCccc--HHHHHHHHHHHHHHcCCHHH
Q 026948          182 ----MVLQISEREGEYSG--STEAYGAIADCYTELGDLER  215 (230)
Q Consensus       182 ----~al~~~~~~~~~~~--~~~~~~~lg~~y~~~g~~~~  215 (230)
                          +|+.+.++.+. ..  ........+.-....|+++.
T Consensus       763 ~~~~~A~~lA~~~~~-~~~~i~~~~~~~~~~L~~~~~~~~  801 (814)
T 3mkq_A          763 QRFSEAAFLGSTYGL-GDNEVNDIVTKWKENLILNGKNTV  801 (814)
T ss_dssp             TCHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             CChHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHhccchhH
Confidence                34555544433 22  44555556666666666543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=92.26  E-value=3.6  Score=32.82  Aligned_cols=101  Identities=13%  Similarity=0.113  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC-CcccH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREG-EYSGS  196 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~Ai~~~~~al~~~~~~~-~~~~~  196 (230)
                      .++.=+..+.+.|++..|.+...-.++.+.+.+..... .....+..++..... -.+=.++.+++++...+.+ .+.+.
T Consensus        57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gd  135 (336)
T 3lpz_A           57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGD  135 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCC
Confidence            34445556666677777766655555555543322211 233344444443332 1123567778888887754 35678


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH
Q 026948          197 TEAYGAIADCYTELGDLERAARFY  220 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~  220 (230)
                      +..+..+|..|++.+++.+|..+|
T Consensus       136 p~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          136 PELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHH
Confidence            899999999999999999999887

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=91.89  E-value=1.3  Score=41.05  Aligned_cols=100  Identities=17%  Similarity=0.093  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQ-NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      .+++.+=..|.+.|+.++|...+.+..+... ....   ....|+-+-..+++.|+.++|.+.|++-.    ..+-.| +
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G~~P-D  199 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL---TLDMYNAVMLGWARQGAFKELVYVLFMVK----DAGLTP-D  199 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTTCCC-C
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCC-c
Confidence            3566777788899999999999976554221 1111   34567788889999999999999999843    333434 5


Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 026948          197 TEAYGAIADCYTELGD-LERAARFYDKYIS  225 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~-~~~A~~~~~~al~  225 (230)
                      ..+|..+-.++.+.|+ .++|.+.+++..+
T Consensus       200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            6788888889999998 4788899888765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.80  E-value=2.5  Score=35.77  Aligned_cols=84  Identities=13%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948          132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  211 (230)
Q Consensus       132 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  211 (230)
                      +.++|.+.|.+...  ..  -.+ ...+|..+-..+.+.|++++|.+.|++-.+.    +-.| ...+|..+-..|...|
T Consensus        85 ~l~~A~~lf~~M~~--~G--~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~~tyn~lI~~~~~~g  154 (501)
T 4g26_A           85 GLSRGFDIFKQMIV--DK--VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQP-RLRSYGPALFGFCRKG  154 (501)
T ss_dssp             HHHHHHHHHHHHHH--TT--CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCC-CHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHH--hC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ccceehHHHHHHHHCC
Confidence            46778777776554  11  111 3456778888999999999999999985432    2223 5678999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 026948          212 DLERAARFYDKYIS  225 (230)
Q Consensus       212 ~~~~A~~~~~~al~  225 (230)
                      +.++|.+.|++..+
T Consensus       155 ~~~~A~~l~~~M~~  168 (501)
T 4g26_A          155 DADKAYEVDAHMVE  168 (501)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.08  E-value=3.2  Score=29.88  Aligned_cols=70  Identities=20%  Similarity=0.186  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HH----------HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALE--LA----------QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL  184 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~----------~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al  184 (230)
                      +.+.+..+.+|...++|.+|+...++.++  +.          .-.-++.+....+..+|..+.+.|+-++||.++..+.
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            44677889999999999999999999883  11          1111334455667889999999999999999999987


Q ss_pred             HH
Q 026948          185 QI  186 (230)
Q Consensus       185 ~~  186 (230)
                      ..
T Consensus       142 ~~  143 (242)
T 3kae_A          142 GK  143 (242)
T ss_dssp             HH
T ss_pred             CC
Confidence            65

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.18  E-value=3.9  Score=29.38  Aligned_cols=47  Identities=19%  Similarity=0.063  Sum_probs=33.9

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          128 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  185 (230)
Q Consensus       128 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~  185 (230)
                      ...|+++.|.+..++.       +    ....+..+|......|+++-|.++|+++-+
T Consensus        16 L~lg~l~~A~e~a~~l-------~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-------N----DSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HhcCCHHHHHHHHHHh-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            3567888877765432       1    245677889999999999999999887643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=89.99  E-value=0.91  Score=38.33  Aligned_cols=90  Identities=13%  Similarity=-0.007  Sum_probs=56.3

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      ...+......++.+.|...|.++ . .+.  .   ....+...+..-...+ +++.|...|+++++..      +..+..
T Consensus       290 ~~y~~~~~r~~~~~~AR~i~~~A-~-~~~--~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~------~~~~~~  356 (493)
T 2uy1_A          290 INHLNYVLKKRGLELFRKLFIEL-G-NEG--V---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH------PDSTLL  356 (493)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHH-T-TSC--C---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-h-CCC--C---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------CCCHHH
Confidence            33444444567788898888888 2 111  1   1223444444444444 6999999999998764      333344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          200 YGAIADCYTELGDLERAARFYDKY  223 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~a  223 (230)
                      +...+......|+.++|...|+++
T Consensus       357 ~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          357 KEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555566666778888887777765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.48  E-value=4.7  Score=35.55  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          158 KAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       158 ~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      ..+..+|..+.+.++++.|+++|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            46778999999999999999999986

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=89.15  E-value=2.7  Score=29.49  Aligned_cols=85  Identities=9%  Similarity=0.045  Sum_probs=61.3

Q ss_pred             hhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 026948           88 ESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL  167 (230)
Q Consensus        88 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~  167 (230)
                      +.|.+++...|..     .   ....+..++.+..-|.. ...+|.++|.+.|+.++++.++      .+..+...+..-
T Consensus        40 d~YerAia~~Pp~-----k---~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk------FAKiwi~~AqFE  104 (161)
T 4h7y_A           40 GRYSQAIEALPPD-----K---YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK------FAFVHISFAQFE  104 (161)
T ss_dssp             HHHHHHHHHSCGG-----G---GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT------BHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcc-----c---cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH------HHHHHHHHHHHH
Confidence            3466666666552     0   13455566666666644 4558999999999999997333      266667777778


Q ss_pred             HHcCCHHHHHHHHHHHHHHH
Q 026948          168 QRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       168 ~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .++|+.+.|.+.+.+|+.+.
T Consensus       105 iRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A          105 LSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHTT
T ss_pred             HHcccHHHHHHHHHHHhccC
Confidence            89999999999999999875

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=87.76  E-value=1.3  Score=28.03  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      ..+..+.-.+..+...|+|++||++.+++...
T Consensus        13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~y   44 (97)
T 2crb_A           13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTY   44 (97)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            34555666777777777777777777777555

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=87.52  E-value=1.7  Score=27.18  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=27.6

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      +|....+..+...|...-..|+|++|+.+|..+++..
T Consensus        10 ~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l   46 (86)
T 4a5x_A           10 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLL   46 (86)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3445566667777888888888888888888888754

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.37  E-value=1.4  Score=37.37  Aligned_cols=75  Identities=13%  Similarity=0.030  Sum_probs=59.0

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      .+...++..++-+=..|...+.|++|.....++.  .+.. ......++.++.+|.++.-+++|.+|.+++..|+...
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            3455667677788889999999999999888774  2321 2344567889999999999999999999999987643

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=86.99  E-value=4.2  Score=25.71  Aligned_cols=35  Identities=11%  Similarity=0.088  Sum_probs=27.8

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      +...+...-.++..+...|+|++|+++..++....
T Consensus        11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL   45 (97)
T 2crb_A           11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYL   45 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            33455555678888999999999999999988854

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.93  E-value=2.6  Score=39.57  Aligned_cols=102  Identities=13%  Similarity=0.061  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHH-----------------HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELA-----------------QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS  181 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~  181 (230)
                      ..+.+|.++...|++++|.++|.++-.-.                 ............|..+...+.+.+.++.+++..+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35789999999999999999998763211                 1111111123457777788889999999999999


Q ss_pred             HHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948          182 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  221 (230)
Q Consensus       182 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  221 (230)
                      .|++.... ++.......|.++=..+..+|+|++|.....
T Consensus       924 lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          924 LADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            99876421 1112233467888888899999999976553

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.64  E-value=1.6  Score=27.16  Aligned_cols=26  Identities=15%  Similarity=0.129  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQ  185 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~  185 (230)
                      +...|.-.=..|+|++|+.+|.++++
T Consensus        22 lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           22 YAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33334344445555555555555544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.51  E-value=2.2  Score=38.10  Aligned_cols=58  Identities=17%  Similarity=0.108  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      +..-+..+...|+|+-|+...++|...++.      .-.+++.|+.+|..+|+|+.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs------eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALD------SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCch------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            334566667889999999999999998776      6788999999999999999999887765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.17  E-value=2.3  Score=30.59  Aligned_cols=47  Identities=11%  Similarity=0.114  Sum_probs=39.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          167 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       167 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      ..+.|+++.|.+..+..           +....|..+|+.....|+++-|..+|+++-
T Consensus        15 AL~lg~l~~A~e~a~~l-----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----------NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHhcCCHHHHHHHHHHh-----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            35779999999887652           235789999999999999999999998863

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.08  E-value=4.7  Score=32.80  Aligned_cols=71  Identities=10%  Similarity=-0.047  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCcc
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYS  194 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~-~~~~~~  194 (230)
                      .+...++..+...|++.+++....+.+...+-      ...++..+-.++...|+..+|++.|+++-+... +.+-.|
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~------~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34456777888999999999999998875433      456778888899999999999999999877543 344444

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=85.40  E-value=0.92  Score=27.87  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=12.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          202 AIADCYTELGDLERAARFYDKYIS  225 (230)
Q Consensus       202 ~lg~~y~~~g~~~~A~~~~~~al~  225 (230)
                      .+|+=|...|+|+.|+.||+.+++
T Consensus        17 k~ARe~Al~GnYdta~~yY~g~~~   40 (78)
T 2rpa_A           17 KLAREYALLGNYDSAMVYYQGVLD   40 (78)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHH
Confidence            345555555555555555555544

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=85.20  E-value=2  Score=26.62  Aligned_cols=19  Identities=32%  Similarity=0.503  Sum_probs=8.9

Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 026948          208 TELGDLERAARFYDKYISR  226 (230)
Q Consensus       208 ~~~g~~~~A~~~~~~al~~  226 (230)
                      ...|+|++|+.+|.++++.
T Consensus        22 D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           22 DKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHH
Confidence            3444444444444444443

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=83.87  E-value=4.2  Score=32.75  Aligned_cols=68  Identities=22%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948          135 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  203 (230)
Q Consensus       135 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  203 (230)
                      .++..|.+++..++..-... ...-|..+|-.+++.+++.+|++.+-.+-...++.+....+.+.|..+
T Consensus       275 ~~l~L~~~AI~sa~~yY~n~-HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf  342 (472)
T 3re2_A          275 PAEELFKEAITVAKREYSDH-HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEF  342 (472)
T ss_dssp             CHHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccC-CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence            37788999998887643322 233466677799999999999999999988887776666666665544

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=83.51  E-value=3.6  Score=25.52  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      ..+..+...|...-..|+|++|+.+|.++++..
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   49 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVL   49 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            455566677888888899999999998888854

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.60  E-value=17  Score=29.57  Aligned_cols=102  Identities=8%  Similarity=0.032  Sum_probs=69.8

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHh----c-------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          126 NFLRNQDLEKAFTEFKAALELAQN----V-------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       126 ~~~~~g~~~~A~~~~~~al~l~~~----~-------~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      +.....+.++|+++.++.......    .       ........+...++..|...++.++|..+.+++-......++..
T Consensus        85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~  164 (393)
T 4b4t_O           85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP  164 (393)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence            445667888998888765332111    0       01122345566778899999999999999999987776665543


Q ss_pred             --cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          195 --GSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       195 --~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                        .....|...+..|...++|..+..+.-.++..+
T Consensus       165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence              344456667888889999998877777766543

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=81.78  E-value=5.5  Score=32.76  Aligned_cols=68  Identities=13%  Similarity=0.071  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948          135 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  203 (230)
Q Consensus       135 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  203 (230)
                      .++..|.+++..++..-... +..-|..+|-.+++.++|.+|+..+-.+-...++.+....+.+.|..+
T Consensus       297 ~~~~L~~~AI~sa~~~Y~n~-HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf  364 (550)
T 3u84_A          297 DPLTLYHKGIASAKTYYRDE-HIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEF  364 (550)
T ss_dssp             CHHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccC-CccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence            36778889998877643222 233466677799999999999999999988887777666666666543

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.45  E-value=4.7  Score=24.94  Aligned_cols=32  Identities=19%  Similarity=0.118  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      .+..+...|...-..|+|++|+.+|..+++..
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   41 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIEVL   41 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            34445556666666777777777777766643

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=80.99  E-value=17  Score=29.31  Aligned_cols=87  Identities=13%  Similarity=-0.011  Sum_probs=60.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHH
Q 026948          141 KAALELAQNVKDPIEEKKAARGLGASLQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  218 (230)
Q Consensus       141 ~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~--~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  218 (230)
                      ++.+=+.=..+.-...+.++.+||..--..--.  ..++..|.+|+...+..-... ...-|..+|-.+.+.+++.+|+.
T Consensus       239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~-HvYPYtylgGy~yR~~~~reAl~  317 (472)
T 3re2_A          239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDH-HIYPYTYLGGYYYRKKKYYEAIA  317 (472)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC-CccchhhhhhhhhhcchHHHHHH
Confidence            444444444455555677888888775543222  238999999999887754433 34457778899999999999999


Q ss_pred             HHHHHHHhhh
Q 026948          219 FYDKYISRLE  228 (230)
Q Consensus       219 ~~~~al~~~~  228 (230)
                      ++-.|-+...
T Consensus       318 ~WA~Aa~Vi~  327 (472)
T 3re2_A          318 SWVDAGYVAG  327 (472)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9988876543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.22  E-value=4  Score=25.49  Aligned_cols=31  Identities=10%  Similarity=0.169  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQI  186 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~  186 (230)
                      .+..+...+.-.-..|+|++|+.+|..+++.
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4555666666666778888888888887655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	8e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	8e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	8e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
                   ++E+A   ++ ALE+            A   L + LQ+QGK +EA+ ++   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEA 365

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGD 212
           ++I           +AY  + +   E+ D
Sbjct: 366 IRI------SPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 14/115 (12%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
            P   +    L           + +A   +  AL L     D +        L    + Q
Sbjct: 267 QPHFPDAYCNL--ANALKEKGSVAEAEDCYNTALRLCPTHADSL------NNLANIKREQ 318

Query: 171 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225
           G   EA++ +   L++      +     A+  +A    + G L+ A   Y + I 
Sbjct: 319 GNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
           L     + G +  A ++   + +          +T     ++  + +   L+R+A F   
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQ------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 223 YIS 225
            I 
Sbjct: 59  AIK 61

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 170
           DP   +    L  G      +  ++A   +  AL L+ N             L      Q
Sbjct: 199 DPNFLDAYINL--GNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQ 250

Query: 171 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
           G    AI  +   +++           +AY  +A+   E G +  A   Y+  +
Sbjct: 251 GLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 12/87 (13%)

Query: 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 180
           ++      +  D E A            +             L +   +  +   +  + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTG------VLLLLSSIHFQCRRLDRSAHFS 56

Query: 181 SMVLQISEREGEYSGSTEAYGAIADCY 207
           ++ ++            EAY  + + Y
Sbjct: 57  TLAIKQ------NPLLAEAYSNLGNVY 77

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 16/107 (14%), Positives = 37/107 (34%)

Query: 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183
            +  +   + E A    +   E A++++   +  +    L     + G+  +A +     
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317

Query: 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230
           L+++ R G  S       A+A    +L  L            R+  +
Sbjct: 318 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 364

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 128 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187
           + + + ++A    K ALE             A   LG  L  +G+   ++       Q++
Sbjct: 23  INDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81

Query: 188 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224
            +   +  +  +    ++     G L+ A    +K  
Sbjct: 82  RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 118

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 147 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 206
            +++++     +            G   EA +   + L+     G +     A   + + 
Sbjct: 2   IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE-LPPGWFYSRIVATSVLGEV 60

Query: 207 YTELGDLERAARFYDKYIS 225
               G+L R+     +   
Sbjct: 61  LHCKGELTRSLALMQQTEQ 79

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 6e-06
 Identities = 19/167 (11%), Positives = 42/167 (25%), Gaps = 14/167 (8%)

Query: 60  ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 119
               R  LQ + +++   +       K+E    + ++    + +         K     +
Sbjct: 29  VWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQA-----KNRANPN 83

Query: 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 179
           R +   N     +    F   +   EL       +  +  +  LG    +Q      +K 
Sbjct: 84  RSEVQANLSLFLEAASGFYT-QLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKP 142

Query: 180 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226
            S                     + D         +A  +Y      
Sbjct: 143 QSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 8/86 (9%)

Query: 140 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199
           +    +  +   +P+ +       G    ++G    A+      +Q            EA
Sbjct: 4   YDKGYQFEEE--NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEA 55

Query: 200 YGAIADCYTELGDLERAARFYDKYIS 225
           +  +     E      A     + + 
Sbjct: 56  WQYLGTTQAENEQELLAISALRRCLE 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-----STEAYGAIADCYTELGD 212
           ++   LG S    G +REA+++    L +  +     G     S   +  +    + LG 
Sbjct: 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300

Query: 213 LERAARFYDKYISRLE 228
            +       + +S L 
Sbjct: 301 SDAYGAADARDLSTLL 316

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190
            D  KA   ++ A E     +      K            G+Y EA   +S +++ S   
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

Query: 191 GEYSGS-TEAYGAIADCYTELGDLERAARFYDKYIS 225
                S  + +     C     D   AAR   +  S
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 7/66 (10%), Positives = 16/66 (24%)

Query: 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222
                + + +   A           ++ G    +   Y     C+   G+   A    + 
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 223 YISRLE 228
            I    
Sbjct: 103 AIQIFT 108

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 6/76 (7%)

Query: 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE------REGEYSGSTEAYGAIADCY 207
           +     A          G+Y EA       ++IS                  +  +A+  
Sbjct: 6   VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65

Query: 208 TELGDLERAARFYDKY 223
             L   + A    DK 
Sbjct: 66  AGLRSFDEALHSADKA 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.65
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.64
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.58
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.57
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.52
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.51
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.51
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.49
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.48
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.46
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.45
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.42
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.41
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.4
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.38
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.34
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.28
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.27
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.27
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.26
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.21
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.13
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.0
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.6
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.44
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.34
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.24
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.2
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.18
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.09
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.04
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.98
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.67
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.44
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.55
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	92.29
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	87.6
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	86.41

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.2e-16  Score=105.97  Aligned_cols=101  Identities=16%  Similarity=0.256  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      +..+...|..++..|+|++|+..|+++++..+.      .+.++.++|.++..+|++++|+..|++++.+.      |..
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~   70 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PDW   70 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------chhhhhcccccccccccccccchhhhhHHHhc------cch
Confidence            445678999999999999999999999997665      67899999999999999999999999999996      778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +.+|+++|.++..+|++++|+..|++++++.++
T Consensus        71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            899999999999999999999999999987654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4e-16  Score=115.25  Aligned_cols=99  Identities=11%  Similarity=0.074  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      ..+...|..++..|+|++|+.+|++++++.+.      .+.++.++|.+|...|+|++|+.+|++|+.+.      |..+
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~------p~~~   72 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQSV   72 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC------CCcH
Confidence            35678999999999999999999999997665      67899999999999999999999999999885      7889


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+|+++|.+|..+|++++|+.+|++++.+.+
T Consensus        73 ~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999998764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.8e-15  Score=115.85  Aligned_cols=105  Identities=15%  Similarity=0.037  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948          113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  192 (230)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~  192 (230)
                      +...+.+++.+|.+|...|++++|+.+|++++++.++      .+.+++++|.++...|++++|+++|++++++.     
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----  101 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----  101 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-----
Confidence            3446778999999999999999999999999998666      67889999999999999999999999999985     


Q ss_pred             cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                       |..+.++.++|.+|..+|++++|+..|+++++..++
T Consensus       102 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_         102 -PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             -hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence             677889999999999999999999999999987653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.7e-15  Score=108.61  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=96.8

Q ss_pred             ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948          112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSM  182 (230)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~  182 (230)
                      +....+..+...|..++..|+|++|+..|++++++.+....         ......++.++|.+|..+|+|++|+.++++
T Consensus         8 ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~   87 (170)
T d1p5qa1           8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK   87 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhh
Confidence            33445667779999999999999999999999998765332         223456788999999999999999999999


Q ss_pred             HHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       183 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++.+.      |..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus        88 al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          88 ALELD------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             hhhcc------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            99995      778999999999999999999999999999997653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.64  E-value=7.8e-15  Score=104.59  Aligned_cols=114  Identities=18%  Similarity=0.178  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~  189 (230)
                      .+...+..|..++..|+|++|+..|++++++.++.++      ....+.++.++|.+|..+|+|++|+..+++++.+.++
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            3445556699999999999999999999999988654      3345778999999999999999999999999999876


Q ss_pred             hCCc-----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          190 EGEY-----SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       190 ~~~~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ....     +....+++++|.+|..+|++++|+.+|++|+++.++
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            5432     234568999999999999999999999999998763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.6e-14  Score=113.02  Aligned_cols=149  Identities=14%  Similarity=0.093  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948           70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~  149 (230)
                      ....++........+.++..|.++++....          .++....+.++.++|.+|..+|++++|+.+|++++++.+.
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~----------~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~  109 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH  109 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhh
Confidence            333333333334677888888888887665          3555566778889999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          150 VKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~-~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      .+.......++.++|.++.. .|++++|+++|++++++.+..++.+....++.++|.+|..+|+|++|+.+|++++....
T Consensus       110 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~  189 (290)
T d1qqea_         110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             cccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence            99999899999999999865 69999999999999999988888777888999999999999999999999999988653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.7e-15  Score=107.30  Aligned_cols=103  Identities=16%  Similarity=0.195  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      ..+..+...|..|+..|+|++|+.+|.+++++.+.      ...++.++|.++...|++++|+..|++++++.      |
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~------p   75 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD------K   75 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHHc------c
Confidence            46667889999999999999999999999997665      78899999999999999999999999999996      7


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ....+|.++|.++..+|++++|+.+|++++.+.+.
T Consensus        76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          76 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            78899999999999999999999999999987643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.5e-15  Score=101.53  Aligned_cols=106  Identities=18%  Similarity=0.332  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-c
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-S  194 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-~  194 (230)
                      ++.....+|..++..|+|++|+.+|++++++.+.      ...++.++|.+|..+|+|++|+++|++++++.+..... .
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            4556778999999999999999999999997655      67799999999999999999999999999998765543 3


Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..+.+|.++|.++..++++++|+.+|++++...
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            456789999999999999999999999998753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.8e-15  Score=110.68  Aligned_cols=104  Identities=16%  Similarity=0.026  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG------  191 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~------  191 (230)
                      .+++++|.+|..+|++++|+.+|++++++.++      .+.+++++|.++..+|+|++|++.|++++...+...      
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh------hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            36889999999999999999999999997666      788999999999999999999999999987643321      


Q ss_pred             ----CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          192 ----EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       192 ----~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                          .......+++++|.+|..+|++++|.+.+++|+.+.
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence                112346789999999999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.59  E-value=4.9e-15  Score=99.75  Aligned_cols=94  Identities=18%  Similarity=0.170  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      ..+.+|..++..|++++|+..|+++++..+.      ...++..+|.++...|++++|+.+|++++++.      |....
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~   85 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIA   85 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccc------cchhhhhhhhhhhhhhhHHHhhcccccccccc------ccccc
Confidence            3577899999999999999999999997655      68899999999999999999999999999996      88899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYI  224 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al  224 (230)
                      ++.++|.+|..+|++++|++++++.|
T Consensus        86 a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          86 VHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999986

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.58  E-value=2.1e-14  Score=101.98  Aligned_cols=110  Identities=20%  Similarity=0.243  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------IEEKKAARGLGASLQRQGKYREAIKYHSMV  183 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~----------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a  183 (230)
                      ...+..+...|..++..|+|.+|+..|.+++.+.+.....          .....++.|+|.+|..+|+|++|+++++++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            3455567789999999999999999999999876643311          112456889999999999999999999999


Q ss_pred             HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       184 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +.+.      |....+|+++|.+|..+|++++|+.+|++++++.+.
T Consensus        94 l~~~------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  133 (153)
T d2fbna1          94 LKID------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  133 (153)
T ss_dssp             HHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             cccc------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9985      778899999999999999999999999999998764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.57  E-value=4.4e-14  Score=101.84  Aligned_cols=109  Identities=11%  Similarity=0.111  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948          115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  185 (230)
Q Consensus       115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---------~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~  185 (230)
                      ..+..+...|..++..|+|++|+..|.+++.+.+...         .......++.|+|.+|..+|+|++|+.++++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            4566778899999999999999999999998775432         2222456688999999999999999999999999


Q ss_pred             HHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          186 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       186 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +.      |....+++++|.+|..+|++++|+.+|++++.+.++
T Consensus        93 l~------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~  130 (168)
T d1kt1a1          93 LD------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  130 (168)
T ss_dssp             HC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred             cc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            85      788999999999999999999999999999987653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.9e-14  Score=110.26  Aligned_cols=122  Identities=18%  Similarity=0.172  Sum_probs=102.1

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      ....++..+.+++...|.              ......+..+|.++...|++++|+.++++++...+.      ...++.
T Consensus       151 ~~~~a~~~~~~al~~~p~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~  210 (323)
T d1fcha_         151 LFLEVKELFLAAVRLDPT--------------SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWN  210 (323)
T ss_dssp             HHHHHHHHHHHHHHHSTT--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhc--------------ccccccchhhHHHHHHHHHHhhhhcccccccccccc------cccchh
Confidence            444555566666655443              112346788999999999999999999999986554      577899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ++|.++...|++++|+++|++++++.      |..+.+++++|.+|..+|++++|+.+|++|+++.++
T Consensus       211 ~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         211 KLGATLANGNQSEEAVAAYRRALELQ------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             hhhhcccccccchhHHHHHHHHHHHh------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999985      778899999999999999999999999999997653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4e-14  Score=104.34  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ++..+++.|..+...|+|++|++.|.++..      .   .+.+++++|.+|..+|+|++|+++|++|+++.      |.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~------~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------p~   68 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQD------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KH   68 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC------C---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh------hh
Confidence            445677889999999999999999876321      2   34678999999999999999999999999996      78


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+.+|+++|.+|..+|+|++|+..|++++...
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            89999999999999999999999999999754

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=1.4e-13  Score=99.18  Aligned_cols=106  Identities=17%  Similarity=0.187  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV----------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~----------~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ......|..++..|+|++|+..|.+++++.+..          ...+....++.++|.++.+.|+|++|+.+|++++++.
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence            345678999999999999999999999865431          1234567789999999999999999999999999885


Q ss_pred             HHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          188 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       188 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                            |..+.+|+++|.+|..+|++++|+..|++++++-+.
T Consensus       108 ------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~  143 (169)
T d1ihga1         108 ------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  143 (169)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence                  788999999999999999999999999999997653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.51  E-value=8.2e-14  Score=98.88  Aligned_cols=139  Identities=16%  Similarity=0.178  Sum_probs=108.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 026948           62 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK  141 (230)
Q Consensus        62 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~  141 (230)
                      .+..+...+.+.+.......+++.++..|.+++...+..................+..+.++|.+|+.+|++++|+.+++
T Consensus        12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~   91 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS   91 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence            34445557778888888888999999999999988765322222111111122234567789999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCC
Q 026948          142 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  212 (230)
Q Consensus       142 ~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~  212 (230)
                      +++++.+.      ...+++++|.++..+|++++|+.+|++++++.      |....+...++.+..++++
T Consensus        92 ~al~~~p~------~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          92 KVLKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASLN------PNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccch------hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHH
Confidence            99997655      67899999999999999999999999999996      7788888889888776543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.3e-13  Score=96.25  Aligned_cols=156  Identities=17%  Similarity=0.185  Sum_probs=119.1

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHH
Q 026948           57 GLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKA  136 (230)
Q Consensus        57 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A  136 (230)
                      -+++..+......+.+.+.......+++.++..|.+++...+.......... ..........+.++|.+|+.+|+|++|
T Consensus         3 ~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~y~k~~~~~~A   81 (170)
T d1p5qa1           3 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA-QKAQALRLASHLNLAMCHLKLQAFSAA   81 (170)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH-HHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHH-hhhchhHHHHHHHHHHHHHhhhhcccc
Confidence            3444445555667788888899988999999999999988775322221110 011222344567899999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHH
Q 026948          137 FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA  216 (230)
Q Consensus       137 ~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  216 (230)
                      +.++++++++.+.      ...+++.+|.++..+|+|++|+.+|++++++.      |....+...++.+....++..+.
T Consensus        82 ~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          82 IESCNKALELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY------PNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhcccc------chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999997655      68899999999999999999999999999996      77888999999998887777655


Q ss_pred             HH-HHHHHHH
Q 026948          217 AR-FYDKYIS  225 (230)
Q Consensus       217 ~~-~~~~al~  225 (230)
                      .. .|.+.++
T Consensus       150 e~~~~~~~f~  159 (170)
T d1p5qa1         150 EKKLYANMFE  159 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            43 3444443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.5e-13  Score=104.91  Aligned_cols=141  Identities=17%  Similarity=0.133  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 026948           66 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  145 (230)
Q Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  145 (230)
                      ....+...+..+...++.+.++..|.+++...|.                .+.+++.+|.+|...|++++|+.+|+++++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----------------CHHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            3345566677777777889999999999998876                456889999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------hC----
Q 026948          146 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER------------------------------EG----  191 (230)
Q Consensus       146 l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~------------------------------~~----  191 (230)
                      +.+.      ...++.++|.++...|++++|+++|++++++...                              ..    
T Consensus       100 ~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (259)
T d1xnfa_         100 LDPT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW  173 (259)
T ss_dssp             HCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred             HHhh------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence            7665      5678999999999999999999999999854311                              00    


Q ss_pred             ------------------------------CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          192 ------------------------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       192 ------------------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                                                    ..+....+++++|.+|..+|++++|+.+|++++...+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         174 GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence                                          0122344677799999999999999999999997654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1e-12  Score=102.65  Aligned_cols=112  Identities=13%  Similarity=0.103  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      +..+...|.+|..+|+|++|+++|.+++++....++.+..+.++.++|.+|...|++++|+++|++++++....++....
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            44566889999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhh
Q 026948          197 TEAYGAIADCYTE-LGDLERAARFYDKYISRLE  228 (230)
Q Consensus       197 ~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~  228 (230)
                      ..++.++|.+|.. .|++++|+.+|++++++.+
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999865 6999999999999998764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.9e-13  Score=92.51  Aligned_cols=113  Identities=12%  Similarity=0.161  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 026948           67 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  146 (230)
Q Consensus        67 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l  146 (230)
                      +..+.+++......++++.++..|.+++...|.                ....+..+|.+|..+|++++|+..+.+++++
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------------chhhhhcccccccccccccccchhhhhHHHh
Confidence            456778888888888999999999999998887                4568899999999999999999999999997


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 026948          147 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  207 (230)
Q Consensus       147 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  207 (230)
                      .+.      ...+++++|.++..+|++++|+..|++++++.      |..+.++..++.+.
T Consensus        67 ~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~l~  115 (117)
T d1elwa_          67 KPD------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE------ANNPQLKEGLQNME  115 (117)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTCHHHHHHHHHHH
T ss_pred             ccc------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHh
Confidence            665      67889999999999999999999999999885      77788888888764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.3e-13  Score=94.68  Aligned_cols=131  Identities=18%  Similarity=0.199  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 026948           66 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  145 (230)
Q Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~  145 (230)
                      +.+++..+++......+++.++..|.+++...|.                ....+..+|.+|...|++++|+..|+++++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~   72 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIE   72 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh----------------hhhhhhhhHHHHHhccccchHHHHHHHHHH
Confidence            3456778888888888999999999999998876                566889999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 026948          146 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT--ELGDLERAARFYDKY  223 (230)
Q Consensus       146 l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~a  223 (230)
                      +.+.      ...++.++|.++...|++++|+.+|++++.+.      |....++..++.+..  ..+.+++|+...+..
T Consensus        73 ~~p~------~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~  140 (159)
T d1a17a_          73 LDKK------YIKGYYRRAASNMALGKFRAALRDYETVVKVK------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  140 (159)
T ss_dssp             HCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hccc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            7665      77889999999999999999999999999985      666777777777653  455577777655444


Q ss_pred             H
Q 026948          224 I  224 (230)
Q Consensus       224 l  224 (230)
                      .
T Consensus       141 ~  141 (159)
T d1a17a_         141 R  141 (159)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.45  E-value=8.2e-13  Score=95.03  Aligned_cols=157  Identities=16%  Similarity=0.159  Sum_probs=119.2

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHH
Q 026948           57 GLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKA  136 (230)
Q Consensus        57 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A  136 (230)
                      -++...+....+.+.+.+..+.....+..++..|.+++...+.......... ..........+.++|.+|+.+|++++|
T Consensus         5 ~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~Nla~~~~~l~~~~~A   83 (168)
T d1kt1a1           5 EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKES-KASESFLLAAFLNLAMCYLKLREYTKA   83 (168)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH-HHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhh-hhcchhHHHHHHhHHHHHHHhhhcccc
Confidence            3334444455567888888888888899999999999988765322222111 112223444667899999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH-H
Q 026948          137 FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE-R  215 (230)
Q Consensus       137 ~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~-~  215 (230)
                      +.++++++++.+.      ...+++++|.++..+|+|++|+.+|++++.+.      |....++..++.+....+++. +
T Consensus        84 i~~~~~al~l~p~------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~~~~~~~e~  151 (168)
T d1kt1a1          84 VECCDKALGLDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQIFMCQKKAKEHNER  151 (168)
T ss_dssp             HHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcccc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHhHHHH
Confidence            9999999997665      67899999999999999999999999999885      777889999999988877665 3


Q ss_pred             HHHHHHHHHHh
Q 026948          216 AARFYDKYISR  226 (230)
Q Consensus       216 A~~~~~~al~~  226 (230)
                      ....|.+..+.
T Consensus       152 ~kk~~~~~f~~  162 (168)
T d1kt1a1         152 DRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            45555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=85.21  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      .++.+|.+++.+|+|++|+.+|++|+++.+... .......++.++|.++.+.|++++|+++|++++++.      |...
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~------P~~~   80 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------PEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC------cCCH
Confidence            578999999999999999999999999988643 233467889999999999999999999999999996      8888


Q ss_pred             HHHHHHHHHHHHc
Q 026948          198 EAYGAIADCYTEL  210 (230)
Q Consensus       198 ~~~~~lg~~y~~~  210 (230)
                      .++.|++.+...+
T Consensus        81 ~a~~Nl~~~~~~l   93 (95)
T d1tjca_          81 RANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998876554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.5e-13  Score=107.42  Aligned_cols=120  Identities=17%  Similarity=0.210  Sum_probs=100.3

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  161 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  161 (230)
                      +.+.++..|.+++...|.                ...++..+|.++...|++++|+..+++++...+.      ....+.
T Consensus       252 ~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  309 (388)
T d1w3ba_         252 LIDLAIDTYRRAIELQPH----------------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLN  309 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSS----------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhhh
Confidence            556666777777766554                3446788899999999999999999988885444      567788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+|.++...|++++|+++|++++++.      |..+.++.++|.+|..+|++++|+.+|++++++.++
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999998874      777899999999999999999999999999987653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.2e-13  Score=105.68  Aligned_cols=117  Identities=9%  Similarity=0.061  Sum_probs=67.6

Q ss_pred             HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948           82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAA  160 (230)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~~  160 (230)
                      +.+.++..+.+++..-|.                ...+++.+|.++...| ++++|+.++++++++.++      ...++
T Consensus        58 ~~~~Al~~~~~ai~lnP~----------------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~------~~~a~  115 (315)
T d2h6fa1          58 RSERAFKLTRDAIELNAA----------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVW  115 (315)
T ss_dssp             CCHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             chHHHHHHHHHHHHHCCC----------------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh------hhhHH
Confidence            345555555556555554                3445556666655544 356666666666664433      45556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948          161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  226 (230)
Q Consensus       161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  226 (230)
                      +++|.++...|++++|++++++++++.      |....+|.++|.++..+|++++|+.+|++++++
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~d------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhh------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            666666666666666666666666553      455556666666666666666666666666554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.9e-13  Score=93.15  Aligned_cols=98  Identities=14%  Similarity=0.094  Sum_probs=81.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .++..+...+++++|.+.|++++.+.+.      ...+++++|.++...   +++++|+..|++++...    ..+....
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~----~~~~~~~   73 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc----CCchHHH
Confidence            4566777889999999999999997665      778999999999864   45667999999988653    1133467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          199 AYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +++++|.+|..+|++++|+.+|++++++-+.
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999997654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.38  E-value=1.2e-12  Score=94.09  Aligned_cols=135  Identities=16%  Similarity=0.127  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 026948           71 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  150 (230)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~  150 (230)
                      ...+.......+++.++..|.+++...+..................+..+.++|.+|...|++++|+.++++++++.+. 
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-  109 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-  109 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-
Confidence            3334444444456666677776665544321111111111223345667889999999999999999999999996544 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHH
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  217 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  217 (230)
                           .+.+++++|.++..+|+|++|+..|++++++.      |....++..++.++.....+.++.
T Consensus       110 -----~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~------p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         110 -----NTKALYRRAQGWQGLKEYDQALADLKKAQEIA------PEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence                 78899999999999999999999999999995      777888999999988877666654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=4.1e-13  Score=98.69  Aligned_cols=102  Identities=21%  Similarity=0.251  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      +.+.+++..+...++++.++..|.+++...|.                .+.++.++|.+|...|++++|+.+|.+++++.
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~----------------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            45778888899989999999999999998886                46688999999999999999999999999965


Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948          148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  191 (230)
Q Consensus       148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~  191 (230)
                      +.      ...+++++|.++..+|+|++|+.+|++++.+.....
T Consensus        69 p~------~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          69 GQ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            54      678899999999999999999999999999886543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.29  E-value=2.2e-10  Score=80.90  Aligned_cols=135  Identities=11%  Similarity=0.051  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC
Q 026948           72 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  151 (230)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~  151 (230)
                      ..+......++++.++..|.+++...+...+...    .......+.++.++|.+|..+|++++|+..+++++.+.++..
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~----~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA----FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC----CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh----cccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            3355555666788899999999998776321111    122334566788999999999999999999999999988643


Q ss_pred             C-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHc
Q 026948          152 D-----PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTEL  210 (230)
Q Consensus       152 ~-----~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~  210 (230)
                      .     .+....+++++|.++..+|++++|+++|++++++.++..+.. ........++..+..+
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHc
Confidence            2     344566899999999999999999999999999998766554 3344444455555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.4e-11  Score=78.76  Aligned_cols=73  Identities=12%  Similarity=0.114  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      +.-++.+|.++.+.|+|++|+.+|++|+++...... .+..+.++.++|.++..+|++++|+.+|++++++-++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence            345789999999999999999999999998866433 3456889999999999999999999999999998654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-11  Score=96.48  Aligned_cols=97  Identities=20%  Similarity=0.199  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948          120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  199 (230)
Q Consensus       120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  199 (230)
                      .+..|..++..|++++|+..|+++++..+.      ...++..+|.++...|++++|+.+|++++++.      |.....
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~   89 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELK------PDNQTA   89 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc------cccccc
Confidence            567899999999999999999999995444      68899999999999999999999999999985      777899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          200 YGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +.++|.+|...|++++|+..+++++.+.+
T Consensus        90 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_          90 LMALAVSFTNESLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             cccccccccccccccccccchhhHHHhcc
Confidence            99999999999999999999999988654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=5e-10  Score=87.59  Aligned_cols=139  Identities=11%  Similarity=-0.044  Sum_probs=120.5

Q ss_pred             HHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948           79 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK  158 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~  158 (230)
                      ..++.+.++..+++++...|.           .+....+.++..+|.+|...|++++|+.+|.+++++.+..++......
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~-----------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPP-----------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCT-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcC-----------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            334678888889989888775           445556678889999999999999999999999999999889999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEY--SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ++.+++.++...|++..|+..+.+++.+.......  +.....+..+|.++...|+++.|..++++++...+
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            99999999999999999999999999988775443  34556788899999999999999999999987654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.9e-12  Score=98.74  Aligned_cols=119  Identities=9%  Similarity=0.048  Sum_probs=105.4

Q ss_pred             HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948           83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  162 (230)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  162 (230)
                      .+.++..+.+++...|.                ...++..+|.++..+|++++|+..+.+++++.++      ...++.+
T Consensus        94 ~~eal~~~~~al~~~p~----------------~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~------n~~a~~~  151 (315)
T d2h6fa1          94 LHEEMNYITAIIEEQPK----------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQH  151 (315)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------------hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc------chHHHHH
Confidence            56677777778777766                5668999999999999999999999999997666      7789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhhc
Q 026948          163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD------LERAARFYDKYISRLES  229 (230)
Q Consensus       163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~------~~~A~~~~~~al~~~~~  229 (230)
                      +|.++...|++++|+++|++++++.      |....+|+++|.++...++      +++|+.++.+++...+.
T Consensus       152 ~~~~~~~~~~~~~Al~~~~~al~~~------p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~  218 (315)
T d2h6fa1         152 RQWVIQEFKLWDNELQYVDQLLKED------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  218 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHC------CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC
Confidence            9999999999999999999999996      7788999999999998887      68999999999987654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-11  Score=97.86  Aligned_cols=101  Identities=19%  Similarity=0.289  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      ...+..+|.++...|++++|+..|++++++.+.      ...++.++|.++...|++++|++.+++++...      |..
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~  304 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTH  304 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC------Ccc
Confidence            345778899999999999999999999986544      56788999999999999999999999988775      667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          197 TEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ...+..+|.++...|++++|+.+|++++++.++
T Consensus       305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  337 (388)
T d1w3ba_         305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred             chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            889999999999999999999999999886543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-10  Score=79.65  Aligned_cols=104  Identities=15%  Similarity=0.207  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  147 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~  147 (230)
                      ....+.+.......+++.++..|.+++...|.                ...++.++|.+|..+|+|++|+..+++++++.
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~   68 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG   68 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC
Confidence            34556677777778889999999999998776                45588899999999999999999999999999


Q ss_pred             HhcCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          148 QNVKD-PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       148 ~~~~~-~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ++... ....+.++..+|.++...+++++|+++|++++...
T Consensus        69 ~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            87544 45567899999999999999999999999998763

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.21  E-value=8.1e-12  Score=87.51  Aligned_cols=90  Identities=19%  Similarity=0.208  Sum_probs=77.0

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948          127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISEREGEYSGS  196 (230)
Q Consensus       127 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~Ai~~~~~al~~~~~~~~~~~~  196 (230)
                      +.+.+.|++|+..|++++++.|+      .+.+++++|.++...          +++++|+..|++++++.      |..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~------P~~   74 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------PKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc------chh
Confidence            45567799999999999997766      788999999998854          55689999999999996      888


Q ss_pred             HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhh
Q 026948          197 TEAYGAIADCYTELGD-----------LERAARFYDKYISRLE  228 (230)
Q Consensus       197 ~~~~~~lg~~y~~~g~-----------~~~A~~~~~~al~~~~  228 (230)
                      +.+|+++|.+|..+|+           |++|..+|++++++-+
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            9999999999988764           6889999999988754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.8e-10  Score=77.01  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhc
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNV  150 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~  150 (230)
                      +..+......+.+...|++++...|.                ...+++++|.++...+   ++++|+..+++++...   
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~----------------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~---   66 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSV----------------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---   66 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCC----------------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc---
Confidence            33444445666777789999998876                4558899999998755   4557898898888621   


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948          151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  210 (230)
Q Consensus       151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  210 (230)
                       ..+....+++++|.+|...|+|++|+++|++++++.      |....+...++.+....
T Consensus        67 -~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~------P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          67 -SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE------PQNNQAKELERLIDKAM  119 (122)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHH
Confidence             234456789999999999999999999999999996      87888888888776554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7.7e-11  Score=98.63  Aligned_cols=98  Identities=12%  Similarity=0.084  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      ....+..+|..+...|++++|+..+.+++...        ...++.++|.++..+|+|++|+.+|++|+.+.      |.
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~------P~  184 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV------PS  184 (497)
T ss_dssp             ------------------------CCHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------CC
Confidence            44567789999999999999999999998854        34688999999999999999999999999996      88


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .+.+|+++|.++...|++.+|+.+|.+++..-
T Consensus       185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            88999999999999999999999999999754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=7e-10  Score=86.71  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948          116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  195 (230)
Q Consensus       116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~  195 (230)
                      .+......|.++...|++++|+..++++++..+. ++......++..+|.++...|++++|+.+|++++.+....++.+.
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3445556799999999999999999999987655 244446778999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          196 STEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++.+++.++...|++..|...+.+++.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            888999999999999999999999999988653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=1.3e-10  Score=81.21  Aligned_cols=108  Identities=13%  Similarity=0.118  Sum_probs=87.0

Q ss_pred             HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHh
Q 026948           80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN----------QDLEKAFTEFKAALELAQN  149 (230)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------g~~~~A~~~~~~al~l~~~  149 (230)
                      ...++.++..|++++...|.                .+.+++++|.++...          +.+++|+..|++++++.++
T Consensus        10 ~~~fe~A~~~~e~al~~~P~----------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~   73 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   73 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HccHHHHHHHHHHHHhhCCc----------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence            34678888999999998887                566888999988754          4568899999999997666


Q ss_pred             cCChHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHH
Q 026948          150 VKDPIEEKKAARGLGASLQRQGK-----------YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  215 (230)
Q Consensus       150 ~~~~~~~~~~~~~lg~~~~~~~~-----------~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~  215 (230)
                            ...+++++|.+|..+|+           |++|+++|++++++.      |.....+..++.+....+.+.+
T Consensus        74 ------~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~------P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          74 ------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ------PDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHTHHHHHHH
T ss_pred             ------hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC------CCHHHHHHHHHHHHHHHHHHHH
Confidence                  77899999999988754           799999999999996      7788888888888655444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.05  E-value=2.9e-10  Score=75.77  Aligned_cols=89  Identities=11%  Similarity=-0.012  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +......++...++..+++++...|.                ...++..+|.++...|++++|+.+|++++++.+.    
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----   82 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----   82 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc----------------cchhhhhhhhhhhhhhhHHHhhcccccccccccc----
Confidence            44455556677788888888888776                4568899999999999999999999999997666    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948          154 IEEKKAARGLGASLQRQGKYREAIKYHSMVL  184 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al  184 (230)
                        ...++.++|.+|...|++++|++++++.|
T Consensus        83 --~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 --DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence              67899999999999999999999999975

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=5e-09  Score=75.51  Aligned_cols=108  Identities=13%  Similarity=0.064  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----CC-----------hHHHHHHHHHHHHHHHHcCCHHHHH
Q 026948          114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-----------PIEEKKAARGLGASLQRQGKYREAI  177 (230)
Q Consensus       114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~~-----------~~~~~~~~~~lg~~~~~~~~~~~Ai  177 (230)
                      -.....+...|......|++++|+..|.+++.+.+..     .+           ......++.+++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            3466678899999999999999999999999976421     11           1223467899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          178 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       178 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      .++++++.+.      |....+|.+++.++...|++++|+..|+++.+..
T Consensus        88 ~~~~~al~~~------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          88 AELEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             HHHHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9999999996      8889999999999999999999999999987654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.8e-08  Score=82.73  Aligned_cols=83  Identities=11%  Similarity=0.075  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      .++..+|.++...|++++|+.+|.+|+++.+.      .+.+++++|.++...|++.+|+.+|.+|+.+.      +..+
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~------~~~~  220 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK------FPFP  220 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS------BCCH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCH
Confidence            46778999999999999999999999998766      77889999999999999999999999999875      6678


Q ss_pred             HHHHHHHHHHHHcCC
Q 026948          198 EAYGAIADCYTELGD  212 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~  212 (230)
                      .++.||+.++....+
T Consensus       221 ~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         221 AASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhh
Confidence            899999998876543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=1e-08  Score=80.71  Aligned_cols=119  Identities=8%  Similarity=-0.052  Sum_probs=93.3

Q ss_pred             HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948           81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKK  158 (230)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~~~~~~~~  158 (230)
                      .+.+.++..+.+++...|.                ...++..+|.++...+  ++++|+..+.+++++.++      ...
T Consensus        87 ~~~~~al~~~~~~l~~~pk----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~------~~~  144 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPK----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFH  144 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHH
T ss_pred             HHHHHHHHHHHHHHHhCCC----------------cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch------hhh
Confidence            3455667777777776665                3446777887776655  589999999999997544      333


Q ss_pred             H-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          159 A-ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       159 ~-~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      + ...+|.++...+++++|+.++++++.+.      |....+|+++|.++..+|++++|...+++++++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~------p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~  208 (334)
T d1dcea1         145 CWDYRRFVAAQAAVAPAEELAFTDSLITRN------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL  208 (334)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHTTTTTT------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred             hhhhHHHHHHHhccccHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH
Confidence            3 4678899999999999999999998885      7889999999999999999988877766665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.44  E-value=8.1e-07  Score=60.30  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      +++.+|.  ....++++|+.+++++.+.        ..+.+++.+|..|..    ..|+++|+++|+++.+.        
T Consensus        27 a~~~l~~--~~~~~~~~a~~~~~~aa~~--------g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--------   88 (133)
T d1klxa_          27 GCLSLVS--NSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------   88 (133)
T ss_dssp             HHHHHHT--CTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------
T ss_pred             hhhhhcc--ccccCHHHHHHHHhhhhcc--------cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--------
Confidence            4555554  3457899999999998762        145778999999987    67899999999999654        


Q ss_pred             cHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948          195 GSTEAYGAIADCYTE----LGDLERAARFYDKYISR  226 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  226 (230)
                      ..+.+.+++|.+|..    ..|+++|..+|++|.+.
T Consensus        89 g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          89 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            357889999999987    67999999999999865

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.34  E-value=8.6e-08  Score=73.17  Aligned_cols=122  Identities=10%  Similarity=-0.030  Sum_probs=84.2

Q ss_pred             HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026948           80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  159 (230)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~  159 (230)
                      .++.+.++..+++++...|.                +......+|.++...|++++|+..+++++++.+.      ...+
T Consensus         9 ~G~l~eAl~~l~~al~~~P~----------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------~~~~   66 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPK----------------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------YLPG   66 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------GHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------cHHH
Confidence            34556677777777777766                4556777788888888888888888888876554      5556


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      ...++.++...+..+++...+.+...     ...+.....+...+.++...|++++|...++++.+..+
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~-----~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKV-----LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEEC-----CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhc-----ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            66666666655555544443332211     12345566777889999999999999999999988654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=4.5e-06  Score=65.07  Aligned_cols=117  Identities=9%  Similarity=-0.057  Sum_probs=87.6

Q ss_pred             HHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHH----------HHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948           84 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTG----------KNFLRNQDLEKAFTEFKAALELAQNVKDP  153 (230)
Q Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~~~~g~~~~A~~~~~~al~l~~~~~~~  153 (230)
                      +.++..+.+.+...|.                ...+++.++          ..+...|++++|+.+++++++..++    
T Consensus        46 ~~al~~~~~~l~~~P~----------------~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk----  105 (334)
T d1dcea1          46 ESVLELTSQILGANPD----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----  105 (334)
T ss_dssp             HHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC----
Confidence            5667777778776665                222333333          3444556688999999999986554    


Q ss_pred             HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCcccHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          154 IEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEA-YGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       154 ~~~~~~~~~lg~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~~~~~-~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                        ...++..+|.++...+  ++++|+..+++++...      |....+ +...|.++...+++++|+.++++++.+-+
T Consensus       106 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p  175 (334)
T d1dcea1         106 --SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (334)
T ss_dssp             --CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             --cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC------chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence              6677888888877765  5899999999999985      444555 56789999999999999999999987654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.24  E-value=6.7e-06  Score=61.84  Aligned_cols=93  Identities=15%  Similarity=0.263  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCc
Q 026948          118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEY  193 (230)
Q Consensus       118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~  193 (230)
                      .+++.+|..++..+|+++|+.+|+++.+.        ....++++||.+|..    ..++..|..+++++...       
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-------   67 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------   67 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-------
Confidence            47889999999999999999999999762        145789999999998    78999999999997643       


Q ss_pred             ccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948          194 SGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  226 (230)
Q Consensus       194 ~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  226 (230)
                       ..+.+..++|..+..    .++.++|..+++++...
T Consensus        68 -~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~  103 (265)
T d1ouva_          68 -NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  103 (265)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -cccchhhccccccccccccchhhHHHHHHHhhhhhh
Confidence             356778889988875    57889999999988753

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=7.6e-06  Score=58.34  Aligned_cols=122  Identities=10%  Similarity=-0.073  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCC--CC--cc--cccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 026948           68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRI--PE--DE--VIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK  141 (230)
Q Consensus        68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~--~~--~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~  141 (230)
                      +.+...+......++.+.++..|.+++...+...-.  ..  ..  ....-......++..++..+...|++++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            456666777777778888888999999887642100  00  00  0001122344567789999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCccc
Q 026948          142 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYSG  195 (230)
Q Consensus       142 ~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~  195 (230)
                      +++.+.+.      ...++..++.++...|++.+|++.|+++.+...+ .+..|.
T Consensus        92 ~al~~~P~------~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          92 ALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            99997665      7789999999999999999999999999776543 454454

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.18  E-value=2.9e-06  Score=64.43  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=70.0

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948          124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  203 (230)
Q Consensus       124 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  203 (230)
                      +...+..|++++|+..++++++..+.      ...++.++|.+++..|++++|+..|++++++.      |.....+..+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~------P~~~~~~~~l   70 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKLF------PEYLPGASQL   70 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------GGGHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCcHHHHHHH
Confidence            34567889999999999999995444      88999999999999999999999999999986      7788889889


Q ss_pred             HHHHHHcCCHHHHH
Q 026948          204 ADCYTELGDLERAA  217 (230)
Q Consensus       204 g~~y~~~g~~~~A~  217 (230)
                      +.++...+..+++.
T Consensus        71 ~~ll~a~~~~~~a~   84 (264)
T d1zbpa1          71 RHLVKAAQARKDFA   84 (264)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHhccccHHHH
Confidence            98887766665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=3.3e-05  Score=50.99  Aligned_cols=68  Identities=15%  Similarity=0.118  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948          157 KKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       157 ~~~~~~lg~~~~~~~---~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  229 (230)
                      ..+.++.|.+..+..   +.++|+..++++++..     +....++++++|..|.++|+|++|..++++++++-+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-----p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            467778888877654   4568999999887642     2345689999999999999999999999999987653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.04  E-value=1.7e-05  Score=59.49  Aligned_cols=93  Identities=14%  Similarity=0.148  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 026948          118 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       118 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~  189 (230)
                      .....+|..|..    ..+...+..+++.+.+.        ....+++++|.++..    .+++++|+.+|+++.+.   
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--------g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~---  211 (265)
T d1ouva_         143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---  211 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT---
T ss_pred             chhhhhhhhhccCCCcccccccchhhhhccccc--------cccccccchhhhcccCcccccchhhhhhhHhhhhcc---
Confidence            356678888875    46677777777777651        146788999999987    78999999999998654   


Q ss_pred             hCCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948          190 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  226 (230)
Q Consensus       190 ~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  226 (230)
                           +.+.++++||.+|..    ..++++|..+|++|.+.
T Consensus       212 -----g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         212 -----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             -----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             -----cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                 346899999999986    45899999999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=2.8e-05  Score=59.84  Aligned_cols=97  Identities=14%  Similarity=0.050  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGKYREAIKYHSMVLQISEREGEYSGST  197 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  197 (230)
                      .+...+......|+++.|...|.++++..+.      ....+...+... ...|+.+.|...|++++...      |...
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~------p~~~  203 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY------GDIP  203 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH------TTCH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh------hhhH
Confidence            3455566666777888888888887764433      233444555443 33577888888888887765      5566


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948          198 EAYGAIADCYTELGDLERAARFYDKYISRL  227 (230)
Q Consensus       198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  227 (230)
                      ..+...+......|++++|+..|++++...
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            777778888888888888888888887643

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=0.00014  Score=55.70  Aligned_cols=100  Identities=9%  Similarity=-0.028  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948          119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  198 (230)
Q Consensus       119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  198 (230)
                      .+...+.....+|+++.|...|+++++..+.  +   ....+...+....+.|++++|.+.|+++++..      |....
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~--~---~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~------~~~~~  169 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHH  169 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--C---THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------TCCTH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHhcC--C---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCcHH
Confidence            5667788889999999999999999974332  1   23456677788889999999999999998764      55667


Q ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhc
Q 026948          199 AYGAIADCYT-ELGDLERAARFYDKYISRLES  229 (230)
Q Consensus       199 ~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~  229 (230)
                      .+...|.... ..|+.+.|...|++++...+.
T Consensus       170 ~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            7888887654 468999999999999987653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=0.00061  Score=44.71  Aligned_cols=78  Identities=10%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948          118 LSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  194 (230)
Q Consensus       118 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  194 (230)
                      .+.++.|+++....   +.++++..+++.++.     ++.....+++++|..|.+.|+|++|..++++++++.      |
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie------P  104 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE------R  104 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------T
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC------C
Confidence            36677777777554   456888888887763     333356899999999999999999999999999996      6


Q ss_pred             cHHHHHHHHHHH
Q 026948          195 GSTEAYGAIADC  206 (230)
Q Consensus       195 ~~~~~~~~lg~~  206 (230)
                      ....+....-.+
T Consensus       105 ~n~qA~~L~~~I  116 (124)
T d2pqrb1         105 NNKQVGALKSMV  116 (124)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            655555444333

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.44  E-value=0.00013  Score=48.81  Aligned_cols=78  Identities=27%  Similarity=0.339  Sum_probs=61.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH-
Q 026948          131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-  209 (230)
Q Consensus       131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-  209 (230)
                      .|+++|+.+|+++.+.-        ...+++++|.  ....++++|+++++++.+.        +.+.+.+++|..|.. 
T Consensus         7 kd~~~A~~~~~kaa~~g--------~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--------g~~~a~~~Lg~~y~~g   68 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--------EMFGCLSLVS--NSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG   68 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--------CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHCC--------Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--------cchhhhhhHHHhhhhc
Confidence            37889999999987631        2345566664  3567999999999998653        357889999999987 


Q ss_pred             ---cCCHHHHHHHHHHHHHh
Q 026948          210 ---LGDLERAARFYDKYISR  226 (230)
Q Consensus       210 ---~g~~~~A~~~~~~al~~  226 (230)
                         ..|+++|..+|+++.+.
T Consensus        69 ~~~~~d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          69 KYVKKDLRKAAQYYSKACGL   88 (133)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHHHHHhhhhcc
Confidence               67899999999999764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.55  E-value=0.24  Score=29.06  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948          156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER  189 (230)
Q Consensus       156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~  189 (230)
                      .+..+.-.+..+...|+|++||++.++|......
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3444555666777777777777777777665444

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.29  E-value=0.14  Score=30.11  Aligned_cols=34  Identities=21%  Similarity=0.107  Sum_probs=29.7

Q ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948          195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  228 (230)
Q Consensus       195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  228 (230)
                      +.+..+-..++-+...|.|++|++++++|.....
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4667788899999999999999999999988654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.60  E-value=0.52  Score=28.52  Aligned_cols=33  Identities=12%  Similarity=0.159  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948          155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  187 (230)
Q Consensus       155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~  187 (230)
                      ..+..+...+.-+-..|+|++|+.+|.++++..
T Consensus        13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l   45 (93)
T d1wfda_          13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDML   45 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            345556666777777888888888888877663

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.41  E-value=2.1  Score=25.60  Aligned_cols=38  Identities=11%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948          111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  148 (230)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~  148 (230)
                      ++....+..+...|..+-..|+|++|+.+|.+++++.-
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            45566777888999999999999999999999998654