Citrus Sinensis ID: 026949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccEEEEEccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccEEEEEccccEEEEcccHHHHHHHHHHHccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKlqvhppeiivdhhiylppgpghhnahgpscsggvvvasrdgkivCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Flexible Loop (DISEMBL)
mndadvskqIQQMVRFIRQEAEEKANeisvsaeeefnieklqlveAEKKKIRqeyerkekqveiRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Low Complexity Region (SEG)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLppgpghhnahgpSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Disordered region (IsUnstruct)
********************************************************************EYSMQLNASRIKVLQA***************VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI**********
Disordered Region (DISOPRED)
****D*SKQIQQMVRFIRQEAEEKANEISVSAE***********************************************VLQAQDDLVSNMMEAA***********NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ***
Disordered Region (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRK********
Disordered Region (DISPRO)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH****GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNxxxxxxxxxxxxxxxxxxxxxxxxVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9MB46	230	V-type proton ATPase subu	N/A	no	1.0	1.0	1.0	1e-130
Q9SWE7	230	V-type proton ATPase subu	N/A	no	1.0	1.0	0.995	1e-129
O23948	237	V-type proton ATPase subu	N/A	no	0.995	0.966	0.815	1e-102
Q41396	229	V-type proton ATPase subu	N/A	no	0.995	1.0	0.791	2e-98
Q39258	230	V-type proton ATPase subu	yes	no	1.0	1.0	0.756	3e-96
Q40272	226	V-type proton ATPase subu	N/A	no	0.978	0.995	0.769	3e-92
P0CAN7	237	V-type proton ATPase subu	no	no	1.0	0.970	0.724	5e-92
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.982	0.961	0.684	6e-85
O00780	233	V-type proton ATPase subu	yes	no	0.965	0.952	0.388	3e-42
P31402	226	V-type proton ATPase subu	N/A	no	0.939	0.955	0.440	4e-42

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  464 bits (1193), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus unshiu (taxid: 55188)

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus limon (taxid: 2708)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/238 (81%), Positives = 209/238 (87%), Gaps = 9/238 (3%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH- 179
           SL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD  ++LPPGP HH 
Sbjct: 121 SLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLPPGPSHHH 179

Query: 180 -------NAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
                   AHGP CSGGVV+ASRDGKIV ENTLDARLDV F KKLPEIRK L  QVAA
Sbjct: 180 GFFHHHAEAHGPFCSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRKWLFGQVAA 237

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  358 bits (919), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/230 (79%), Positives = 202/230 (87%), Gaps = 1/230 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEK
Sbjct: 1   MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQ
Sbjct: 61  QVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+LP GP HH 
Sbjct: 121 SLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHK 179

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
            HG  CSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +  AA
Sbjct: 180 EHGLHCSGGVVLASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFAVAAA 229

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  351 bits (900), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 174/230 (75%), Positives = 199/230 (86%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
            LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+LPP P  ++
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
            HG  CSGGVV+ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct: 181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  337 bits (865), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 174/226 (76%), Positives = 195/226 (86%), Gaps = 1/226 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK K
Sbjct: 1   MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQ
Sbjct: 61  QVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+LPP P  ++
Sbjct: 121 SLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYD 179

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 226
           +H  SCSGGVV+ASRDGKIV ENTLDARL+V FRKKLP+IRKQL +
Sbjct: 180 SHELSCSGGVVMASRDGKIVFENTLDARLEVAFRKKLPQIRKQLFA 225

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  337 bits (863), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 171/236 (72%), Positives = 197/236 (83%), Gaps = 6/236 (2%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSR------DHNSYKKLL 114
           QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct: 61  QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query: 115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 174
           K LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+LPP
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query: 175 GPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
            P   + H  SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct: 181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  313 bits (802), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 156/228 (68%), Positives = 195/228 (85%), Gaps = 2/228 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct: 61  QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY--LPPGPGH 178
           SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++   PP P  
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180

Query: 179 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 226
            ++H P CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV 
Sbjct: 181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLVG 228

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O00780|VATE_DICDI V-type proton ATPase subunit E OS=Dictyostelium discoideum GN=vatE PE=1 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 146/224 (65%), Gaps = 2/224 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           M+D  V+ Q+ QM  FI QEA++KANEI   A +EF  EK ++ + EK KI +EYE+K+K
Sbjct: 1   MDDTQVNAQLDQMKNFILQEAQDKANEIKTKATQEFTSEKGRIFQNEKIKIIKEYEKKQK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
            +E++KKI  S +LN SR+ VL+ +++ + ++++ A K++  +S D + Y+ +LK LI Q
Sbjct: 61  LIEVQKKINLSNELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDKYQTILKNLIYQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
             ++L E  + +  RK+D  L+E     A  +Y + +     ++ VD   +LP GP   +
Sbjct: 121 GFVKLNENKIQVVGRKEDAGLLEKATTEAAAQYKKNVG-KSIDVSVDKERFLPQGP-KSD 178

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
            +GP+C GGV++++ +G+I+C+NTLD+RL++ F +  P IR QL
Sbjct: 179 YNGPTCCGGVILSALEGRIICKNTLDSRLEICFDQLTPVIRTQL 222

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Dictyostelium discoideum (taxid: 44689)

>sp|P31402|VATE_MANSE V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1

 Score =  171 bits (433), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/227 (44%), Positives = 150/227 (66%), Gaps = 11/227 (4%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE++KKI+ S  LN +R+KVL+ ++D V N+++ A K +  V +D   Y  LL  LIVQ
Sbjct: 63  QVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLIVQ 122

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           +L +L EP V LR R+ D  LVES+L  A+++Y  K++     + +D+  +LPP      
Sbjct: 123 ALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIK-KDVVLKIDNENFLPPD----- 176

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 227
               +C G  ++A++ G+I   NTL++RL+++ ++ LPEIR  L  +
Sbjct: 177 ----TCGGIELIAAK-GRIKISNTLESRLELIAQQLLPEIRNALFGR 218

The vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. This subunit is essential for its assembly or catalytic function. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
12585474	230	RecName: Full=V-type proton ATPase subun	1.0	1.0	1.0	1e-128
12585492	230	RecName: Full=V-type proton ATPase subun	1.0	1.0	0.995	1e-127
255537687	230	vacuolar ATP synthase subunit E, putativ	1.0	1.0	0.869	1e-112
225426050	230	PREDICTED: V-type proton ATPase subunit	1.0	1.0	0.869	1e-110
118488420	229	unknown [Populus trichocarpa]	0.991	0.995	0.850	1e-106
224118820	229	predicted protein [Populus trichocarpa]	0.991	0.995	0.850	1e-106
224123646	229	predicted protein [Populus trichocarpa]	0.986	0.991	0.845	1e-104
449460539	229	PREDICTED: V-type proton ATPase subunit	0.995	1.0	0.847	1e-104
356513307	232	PREDICTED: V-type proton ATPase subunit	1.0	0.991	0.818	1e-103
356528948	232	PREDICTED: V-type proton ATPase subunit	1.0	0.991	0.823	1e-103

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
           AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Sbjct: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/230 (86%), Positives = 218/230 (94%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK+RQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKVRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDD+V+ M EAA+K++LNVSRDH+ Y+KLLK LIVQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDVVNAMKEAATKDLLNVSRDHHVYRKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDD HL+ESVL+SAKEEYA+K+ VH PEIIVD+H++LPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLLESVLDSAKEEYAEKVNVHAPEIIVDNHVFLPPAPSHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
            HGP CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRK+L SQVAA
Sbjct: 181 VHGPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKKLFSQVAA 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426050|ref|XP_002274995.1| PREDICTED: V-type proton ATPase subunit E [Vitis vinifera] gi|297742293|emb|CBI34442.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/230 (86%), Positives = 215/230 (93%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRKKIEYSMQLNASRIKVLQAQDDLVS+M EAASKE+L+VS DH+ YK+LL+ L+VQ
Sbjct: 61  QVDIRKKIEYSMQLNASRIKVLQAQDDLVSSMKEAASKELLHVSHDHHVYKRLLRDLVVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDD HLVES+L+SAK+EYA K  V+PPEIIVDH +YLPP P HH+
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLVESILDSAKDEYAGKANVYPPEIIVDHQVYLPPAPSHHH 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
           AHGP CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRK L  QVAA
Sbjct: 181 AHGPFCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKWLFGQVAA 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488420|gb|ABK96025.1| unknown [Populus trichocarpa]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/228 (85%), Positives = 210/228 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLNSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV 228
           AHGP CSGGVV+ASRDGKIV EN+LDARLDVVFRKKLPEIRK LV QV
Sbjct: 181 AHGPFCSGGVVLASRDGKIVFENSLDARLDVVFRKKLPEIRKLLVGQV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118820|ref|XP_002331357.1| predicted protein [Populus trichocarpa] gi|222874395|gb|EEF11526.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/228 (85%), Positives = 210/228 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLHSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV 228
           AHGP CSGGVV+ASRDGKIV EN+LDARLDVVFRKKLPEIRK LV QV
Sbjct: 181 AHGPFCSGGVVLASRDGKIVFENSLDARLDVVFRKKLPEIRKLLVGQV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123646|ref|XP_002319131.1| predicted protein [Populus trichocarpa] gi|118481235|gb|ABK92567.1| unknown [Populus trichocarpa] gi|118486319|gb|ABK95001.1| unknown [Populus trichocarpa] gi|222857507|gb|EEE95054.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/227 (84%), Positives = 208/227 (91%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A KE+LNVS++ + YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDMVNSMKDGAGKELLNVSQNQHHYKNLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDH+LVESVL SAK+EYA+K  V PPEIIVDH+IYLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHNLVESVLHSAKDEYAEKANVFPPEIIVDHNIYLPPAPSHHN 180

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 227
           AHG SCSGGVV+ASRDGKIV EN+LDARLDV FRKKLPEIRK LV Q
Sbjct: 181 AHGLSCSGGVVLASRDGKIVFENSLDARLDVAFRKKLPEIRKLLVGQ 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460539|ref|XP_004148003.1| PREDICTED: V-type proton ATPase subunit E-like [Cucumis sativus]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/230 (84%), Positives = 212/230 (92%), Gaps = 1/230 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V++M EAASKE+L++ ++ + YK LLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNDMKEAASKELLSIGQNEHVYKNLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRK D +LVESVL SA  EYA+K +VH PEIIVD H++LPPGP HH+
Sbjct: 121 SLLRLKEPAVLLRCRKSDVYLVESVLGSAAVEYAEKEKVHEPEIIVD-HVHLPPGPSHHH 179

Query: 181 AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
            HGPSCSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRK L SQVAA
Sbjct: 180 QHGPSCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKSLFSQVAA 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513307|ref|XP_003525355.1| PREDICTED: V-type proton ATPase subunit E-like [Glycine max]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/232 (81%), Positives = 208/232 (89%), Gaps = 2/232 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA+KKKIRQEYERKE+
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEADKKKIRQEYERKER 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNS--YKKLLKGLI 118
           QVEIRKKIEYSMQLNASRIKVLQAQDD++S+M EAASKE+L VS  H+   Y+ LLK LI
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLTVSHHHDDHVYRNLLKDLI 120

Query: 119 VQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH 178
           VQ LLRLKEP+VLLRCRKDD HLVE+VL+SA +EYA+K  V PPEIIVD+ +YLPPGP  
Sbjct: 121 VQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGPSR 180

Query: 179 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
           HN+H   CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  Q+ A
Sbjct: 181 HNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQIVA 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528948|ref|XP_003533059.1| PREDICTED: V-type proton ATPase subunit E-like [Glycine max]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/232 (82%), Positives = 208/232 (89%), Gaps = 2/232 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE+
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKER 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNS--YKKLLKGLI 118
           QVEIRKKIEYSMQLNASRIKVLQAQDD++S+M EAASKE+LNVS  H+   Y+ LLK LI
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLNVSHHHDDHVYRNLLKDLI 120

Query: 119 VQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH 178
           VQ LLRLKEP+VLLRCRKDD HLVE+VL+SA +EYA+K  V PPEIIVD+ +YLPPG  H
Sbjct: 121 VQCLLRLKEPSVLLRCRKDDLHLVENVLDSAAQEYAEKANVDPPEIIVDNQVYLPPGLTH 180

Query: 179 HNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
            N+H   CSGGVV+ASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  Q+ A
Sbjct: 181 QNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQIVA 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	1.0	1.0	0.734	3.6e-82
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	1.0	0.970	0.707	3.7e-80
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.978	0.957	0.669	5.7e-75
UNIPROTKB|F1S5M0	226	ATP6V1E2 "Uncharacterized prot	0.926	0.942	0.437	1.2e-42
UNIPROTKB|Q32LB7	226	ATP6V1E2 "V-type proton ATPase	0.926	0.942	0.437	3.2e-42
FB|FBgn0015324	226	Vha26 "Vacuolar H[+]-ATPase 26	0.921	0.938	0.44	4e-42
ZFIN|ZDB-GENE-041212-51	226	atp6v1e1a "ATPase, H+ transpor	0.926	0.942	0.401	4.6e-41
UNIPROTKB|P11019	226	ATP6V1E1 "V-type proton ATPase	0.917	0.933	0.420	7.5e-41
MGI|MGI:894326	226	Atp6v1e1 "ATPase, H+ transport	0.917	0.933	0.420	7.5e-41
UNIPROTKB|E2QUI3	226	ATP6V1E2 "Uncharacterized prot	0.926	0.942	0.433	9.6e-41

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 169/230 (73%), Positives = 192/230 (83%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct:     1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct:    61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
              LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+L        
Sbjct:   121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
                  CSGGVV+ASRDGKIVCENTLDARLDV FR KLP IRK L  QV A
Sbjct:   181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 167/236 (70%), Positives = 192/236 (81%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct:     1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLL 114
             QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct:    61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query:   115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXX 174
             K LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L  
Sbjct:   121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query:   175 XXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230
                       SC+GGVV+ASRDGKIVCENTLDARL+V FR KLPEIRK L  +V A
Sbjct:   181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 152/227 (66%), Positives = 189/227 (83%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct:    61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
             SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++L        
Sbjct:   121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180

Query:   181 XXXXS--CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 225
                    CSGGVV+AS+DGKIVCENTLDARLDV FR+KLP+IR +LV
Sbjct:   181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLV 227

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|F1S5M0 ATP6V1E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 98/224 (43%), Positives = 142/224 (63%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S   N +R+KVL+A++DL+S ++  A   +  +  D   Y+ LL  L++Q
Sbjct:    63 QIEQQKKIQMSTMRNQARLKVLRARNDLISELLNDAKLSLSRIVADQEVYQALLDKLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
              LLRL EP V++RCR  D  LV++ ++ A  +Y      H  E+ VD  + L        
Sbjct:   123 GLLRLLEPVVIIRCRPQDLFLVKAAVQKAIPQYTTISHKHV-EVQVDQEVQLAT------ 175

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
                   +GGV V S D +I   NTL++RLD++F++K+PEIRK L
Sbjct:   176 ----DAAGGVEVYSGDQRIKVSNTLESRLDLLFQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|Q32LB7 ATP6V1E2 "V-type proton ATPase subunit E 2" [Bos taurus (taxid:9913)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 98/224 (43%), Positives = 143/224 (63%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S   N +R+KVL+A++DL+S ++  A   +  +  D   Y+ LL  L++Q
Sbjct:    63 QIEQQKKIQMSTLRNQARLKVLRARNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
              LLRL EP V++RCR  DH LVE+ ++ A  +Y   +     E+ VD  + L        
Sbjct:   123 GLLRLLEPVVIVRCRPQDHFLVEAAVQRAIPQYTA-VSHRCVEVQVDKEVQLATDT---- 177

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
                   +GGV V S D +I+  NTL++RLD++ ++K+PEIRK L
Sbjct:   178 ------TGGVEVYSSDQRIMVSNTLESRLDLLSQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

FB|FBgn0015324 Vha26 "Vacuolar H[+]-ATPase 26kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 99/225 (44%), Positives = 152/225 (67%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QVE++KKI+ S  LN +R+KVL+ ++D VS++++ A K +  V+++ + Y+ +L  LIVQ
Sbjct:    63 QVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP-EIIVDHHIYLXXXXXXX 179
              L ++ EP V+LRCR+ D  LV +VL +A E+Y  K Q++   E+ +D   +L       
Sbjct:   123 GLFQIMEPKVILRCREVDVPLVRNVLPAAVEQY--KAQINQNVELFIDEKDFLSAD---- 176

Query:   180 XXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
                  +C GGV + + +G+I   NTL++RLD++ ++ +PEIR  L
Sbjct:   177 -----TC-GGVELLALNGRIKVPNTLESRLDLISQQLVPEIRNAL 215

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-041212-51 atp6v1e1a "ATPase, H+ transporting, lysosomal , V1 subunit E1a" [Danio rerio (taxid:7955)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 90/224 (40%), Positives = 149/224 (66%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DA V KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDAAVQKQIKHMMAFIDQEASEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DD++ +++  A + +  +++D N Y+ LL+GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLKARDDMIKDLLNDARERLATIAKDPNQYQTLLEGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
                +L EP V++RCRK+D  +V++ ++     Y + ++ +  E+ +D + +L        
Sbjct:   123 GFYQLLEPRVIIRCRKEDVAMVQTAVQKNIPIYKEAVKSNI-EVRIDENTFLSP------ 175

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
                   SGGV V + DG+I   NTL++RLD++ ++ +P+IR  L
Sbjct:   176 ----DISGGVEVYNADGRIKASNTLESRLDLLAQQMMPDIRVSL 215

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|P11019 ATP6V1E1 "V-type proton ATPase subunit E 1" [Bos taurus (taxid:9913)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 95/226 (42%), Positives = 146/226 (64%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 178
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYLPE---- 175

Query:   179 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
                     +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

MGI|MGI:894326 Atp6v1e1 "ATPase, H+ transporting, lysosomal V1 subunit E1" [Mus musculus (taxid:10090)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 95/226 (42%), Positives = 146/226 (64%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXX 178
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL      
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYLPE---- 175

Query:   179 XXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
                     +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   176 ------EIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IGI

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0015992 "proton transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|E2QUI3 ATP6V1E2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 97/224 (43%), Positives = 142/224 (63%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++D DV KQI+ M+ FI QEA EKA EI   +EEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDGDVQKQIKHMMAFIEQEANEKAEEIDAKSEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S   N +R+KVL+A+DDL+S ++  A   +  +  D   Y+ LL  L++Q
Sbjct:    63 QIEQQKKIQMSTMRNQARLKVLRARDDLISELLNDAKLRLSRIVADPEVYQGLLDKLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXX 180
              LLRL EP V++RCR  D  LVE+ +  A  EY   +     E+ VD  ++L        
Sbjct:   123 GLLRLLEPVVIIRCRPQDLLLVEAAVLKAIPEY-MAVSHKCVEVQVDQEVHLSM------ 175

Query:   181 XXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
                 + +GGV V S + +I   NTL++RLD++ ++K+PEIRK L
Sbjct:   176 ----NAAGGVEVYSGNQRIKVSNTLESRLDLLAQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00780	VATE_DICDI	No assigned EC number	0.3883	0.9652	0.9527	yes	no
Q40272	VATE_MESCR	No assigned EC number	0.7699	0.9782	0.9955	N/A	no
Q6PCU2	VATE1_RAT	No assigned EC number	0.4210	0.9260	0.9424	yes	no
P54611	VATE_DROME	No assigned EC number	0.4273	0.9391	0.9557	yes	no
P0CAN7	VATE3_ARATH	No assigned EC number	0.7245	1.0	0.9704	no	no
P11019	VATE1_BOVIN	No assigned EC number	0.4210	0.9260	0.9424	yes	no
O23948	VATE_GOSHI	No assigned EC number	0.8151	0.9956	0.9662	N/A	no
Q39258	VATE1_ARATH	No assigned EC number	0.7565	1.0	1.0	yes	no
P50518	VATE1_MOUSE	No assigned EC number	0.4210	0.9260	0.9424	yes	no
O13687	VATE_SCHPO	No assigned EC number	0.3215	0.9434	0.9559	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.9956	1.0	1.0	N/A	no
P22203	VATE_YEAST	No assigned EC number	0.3424	0.9130	0.9012	yes	no
Q41396	VATE_SPIOL	No assigned EC number	0.7913	0.9956	1.0	N/A	no
P36543	VATE1_HUMAN	No assigned EC number	0.4210	0.9260	0.9424	yes	no
Q9MB46	VATE_CITUN	No assigned EC number	1.0	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002474001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (230 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00029599001	SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (849 aa)						•			0.899
	GSVIVG00026188001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_37, whole genome shot [...] (222 aa)						•			0.899
	GSVIVG00024902001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)						•			0.899
	GSVIVG00022618001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (606 aa)						•			0.899
	GSVIVG00013522001	SubName- Full=Chromosome undetermined scaffold_495, whole genome shotgun sequence; (285 aa)						•			0.899
	VPP	SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (764 aa)						•			0.899
	GSVIVG00003295001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (767 aa)						•			0.899
	GSVIVG00000475001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (214 aa)						•			0.899
	GSVIVG00018828001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (261 aa)	•			•	•	•	•		0.768
	GSVIVG00015498001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (509 aa)	•			•	•	•	•		0.643

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	2e-70
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	3e-21
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	2e-08
PRK03963	198	PRK03963, PRK03963, V-type ATP synthase subunit E;	6e-07

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  213 bits (544), Expect = 2e-70
 Identities = 100/209 (47%), Positives = 135/209 (64%), Gaps = 15/209 (7%)

Query: 16  FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75
           FIRQEAEEKA EI   AEEEF IEK + VE  +KKI + YE+KEKQ E+ K+I  S   N
Sbjct: 1   FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60

Query: 76  ASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCR 135
            +R+KVL A+++L+ ++ E A + + N+S D + YK LLK LI Q+L++L EP V++R R
Sbjct: 61  EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120

Query: 136 KDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASR 195
           ++D  LV+S L+ AKEEY +K      E I D+                 C GGVV+ + 
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGDN---------------IDCIGGVVLETE 165

Query: 196 DGKIVCENTLDARLDVVFRKKLPEIRKQL 224
           DGKI  +NTL+ARL+ VF + LPEIRK L
Sbjct: 166 DGKIRVDNTLEARLERVFEQLLPEIRKAL 194

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 87.0 bits (216), Expect = 3e-21
 Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 27/215 (12%)

Query: 10  IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69
           ++++++ I +EAEE+A EI   A EE    K +     ++ I +   + EK+ E  ++  
Sbjct: 4   LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63

Query: 70  YSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPA 129
            S  L  +R K+L+A+++++ ++ EA  +++ N++ D     + L+ L++++L +L    
Sbjct: 64  ISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASD--PEYESLQELLIEALEKLLGGE 121

Query: 130 VLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGG 189
           +++   + D  LVE +L   K                          G     G    GG
Sbjct: 122 LVVYLNEKDKALVEQILRELK-------------------------IGVELGEGIDIIGG 156

Query: 190 VVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
           VVV SRDGKI  +NT ++ L+ V  + LPEI ++L
Sbjct: 157 VVVESRDGKIRLDNTFESILERVLEELLPEISEKL 191

Length = 194

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 38/214 (17%)

Query: 17  IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK-EKQVE-IRKKIEYSMQL 74
           IR EA  +A+EI   A+EE   E +   EA+ ++I ++ E + E+++E +R++   S +L
Sbjct: 10  IRDEARARASEIRAEADEEAE-EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKL 68

Query: 75  NASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRC 134
            A R + L A+ +++ ++      E+ ++  D    ++L K L+  +        V +  
Sbjct: 69  EAKRER-LNARKEVLEDVRNQVEDEIASLDGDKR--EELTKSLLDAA----DADGVRVYS 121

Query: 135 RKDDHHLVESVLESAKE-EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVA 193
           RKDD  LV+S+L      EYA  +                            C GGVVV 
Sbjct: 122 RKDDEDLVKSLLSDYDGLEYAGNID---------------------------CLGGVVVE 154

Query: 194 SRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 227
           S DG++   NT D+ L+ V+   L EI  +L  +
Sbjct: 155 SEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188

Length = 188

>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 28/203 (13%)

Query: 11  QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK--KIRQEYERKEK-QVEIRKK 67
           + +++ I +EAE+K   I   A++E   EK++  EA K+     +   RK K Q E+ K+
Sbjct: 5   ELIIQEINREAEQKIEYILEEAQKE--AEKIK-EEARKRAESKAEWILRKAKTQAELEKQ 61

Query: 68  IEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE 127
              +      R K L  Q++L+S ++EA  + +  +  D   Y + LK L  +++  L E
Sbjct: 62  RIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPEDE--YFETLKALTKEAVEELGE 119

Query: 128 PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS 187
             V++R  +    L++S LE  ++E          EI +   I                 
Sbjct: 120 DKVVVRSNERTLKLIDSRLEEIRDELGDV------EIELGEPI--------------ETI 159

Query: 188 GGVVVASRDGKIVCENTLDARLD 210
           GGV+V ++DG I  +NT +AR++
Sbjct: 160 GGVIVETKDGTIRVDNTFEARME 182

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PRK03963	198	V-type ATP synthase subunit E; Provisional	100.0
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	100.0
PRK02292	188	V-type ATP synthase subunit E; Provisional	100.0
PRK01194	185	V-type ATP synthase subunit E; Provisional	99.98
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.97
PRK01558	198	V-type ATP synthase subunit E; Provisional	99.94
PRK01005	207	V-type ATP synthase subunit E; Provisional	99.9
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	99.61
PRK09098	233	type III secretion system protein HrpB; Validated	99.56
PRK06937	204	type III secretion system protein; Reviewed	99.54
PRK06669	281	fliH flagellar assembly protein H; Validated	99.48
PRK06328	223	type III secretion system protein; Validated	99.46
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	99.25
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	99.22
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	99.04
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	98.95
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.87
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	98.83
PRK05687	246	fliH flagellar assembly protein H; Validated	98.81
PRK06032	199	fliH flagellar assembly protein H; Validated	98.57
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	98.49
PRK08475	167	F0F1 ATP synthase subunit B; Validated	98.28
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	98.24
PRK01005	207	V-type ATP synthase subunit E; Provisional	97.5
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	97.16
PRK08404	103	V-type ATP synthase subunit H; Validated	97.09
PRK07352	174	F0F1 ATP synthase subunit B; Validated	97.0
PRK01558	198	V-type ATP synthase subunit E; Provisional	96.98
PRK03963	198	V-type ATP synthase subunit E; Provisional	96.95
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	96.87
PRK06231	205	F0F1 ATP synthase subunit B; Validated	96.87
PRK01194	185	V-type ATP synthase subunit E; Provisional	96.84
CHL00019	184	atpF ATP synthase CF0 B subunit	96.81
PRK02292	188	V-type ATP synthase subunit E; Provisional	96.81
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	96.77
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	96.69
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	96.68
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	96.64
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	96.58
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	96.51
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	96.46
PRK05759	156	F0F1 ATP synthase subunit B; Validated	96.44
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	96.35
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	96.32
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	96.32
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	96.26
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	96.22
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	96.16
PRK15354	224	type III secretion system protein SsaK; Provisiona	96.14
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	96.08
PRK06568	154	F0F1 ATP synthase subunit B; Validated	95.99
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	95.97
PRK09098	233	type III secretion system protein HrpB; Validated	95.92
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	95.67
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	95.66
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	95.66
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	95.59
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	95.53
PRK15322	210	invasion protein OrgB; Provisional	95.44
PRK09173	159	F0F1 ATP synthase subunit B; Validated	95.41
PRK09173	159	F0F1 ATP synthase subunit B; Validated	95.4
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	95.33
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	95.28
PRK06231	205	F0F1 ATP synthase subunit B; Validated	95.12
PRK08475	167	F0F1 ATP synthase subunit B; Validated	95.12
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	95.07
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	94.99
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	94.89
PRK08404	103	V-type ATP synthase subunit H; Validated	94.84
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	94.79
CHL00019	184	atpF ATP synthase CF0 B subunit	94.68
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	94.65
PRK00106	535	hypothetical protein; Provisional	94.61
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	94.56
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	94.42
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	94.42
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	94.39
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	94.39
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	94.14
PRK06669	281	fliH flagellar assembly protein H; Validated	94.14
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	94.1
PRK07352	174	F0F1 ATP synthase subunit B; Validated	94.07
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	93.98
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	93.93
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	93.7
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	93.55
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	93.53
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	93.47
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	93.4
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	92.87
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	92.62
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	92.39
PRK06568	154	F0F1 ATP synthase subunit B; Validated	92.38
PRK12704	520	phosphodiesterase; Provisional	92.35
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	92.15
PRK12704	520	phosphodiesterase; Provisional	92.12
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	91.9
PRK05759	156	F0F1 ATP synthase subunit B; Validated	91.8
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	91.38
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	90.72
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	90.62
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	89.86
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	89.57
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	89.47
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	88.18
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	88.03
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	87.47
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	86.41
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	85.44
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	84.88
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	82.89
KOG1662	210	consensus Mitochondrial F1F0-ATP synthase, subunit	81.18
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	80.5

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=1.1e-54  Score=352.10  Aligned_cols=219  Identities=55%  Similarity=0.811  Sum_probs=214.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (230)
Q Consensus         1 ~~~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~   80 (230)
                      |||+||+++|.+|++||++||++||+||-..|++||++||.+|+++++.+|++.|++++++++.++.+..|+.+|++|++
T Consensus         1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK   80 (220)
T KOG1664|consen    1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK   80 (220)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCC
Q 026949           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (230)
Q Consensus        81 ~l~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~  160 (230)
                      +|.+|+++|+.+|++|+.+|...+.+++.|+.+|.+||.||+..|.+|.++|+|++.|.++|+..++++...|....|. 
T Consensus        81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~-  159 (220)
T KOG1664|consen   81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGV-  159 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcC-
Confidence            9999999999999999999999999988999999999999999999999999999999999999999999999999998 


Q ss_pred             CCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCCCCC
Q 026949          161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA  230 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~~~~  230 (230)
                      ++++.+|.+.|||+          +|.|||+|+|.||+|.|+|||++||+.++++.+|+|++.|||+++.
T Consensus       160 ~~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~n  219 (220)
T KOG1664|consen  160 GVEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANPN  219 (220)
T ss_pred             CceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCCC
Confidence            48999999999986          8999999999999999999999999999999999999999999873

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=100.00  E-value=4.6e-35  Score=244.08  Aligned_cols=191  Identities=27%  Similarity=0.404  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY----ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~----~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar   85 (230)
                      |+++++.|+++|+.++++|+.+|+.+++    +++++...++..+.    ++...+++..+++.+|...+..|+.+|.+|
T Consensus         4 l~~i~~~il~~A~~ea~~il~~A~~~a~----~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar   79 (198)
T PRK03963          4 AELIIQEINREAEQKIEYILEEAQKEAE----KIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQ   79 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999988    66666655555433    344556777788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 026949           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  165 (230)
Q Consensus        86 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~  165 (230)
                      +++++++|..|+++|.+++.+  .|+.||.+||.+++..+++++++|+|+|.|..++.++++.+...+    |  ++++.
T Consensus        80 ~el~~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~~----~--~~~i~  151 (198)
T PRK03963         80 EELISEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDEL----G--DVEIE  151 (198)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHHh----C--CeEEE
Confidence            999999999999999999876  799999999999999999899999999999999999888766543    2  34566


Q ss_pred             eccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcC
Q 026949          166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  226 (230)
Q Consensus       166 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~  226 (230)
                      ++.       |       .+|.|||||+|++|+|+|||||++||+.+|++++|+|++.|||
T Consensus       152 ~~~-------~-------~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~  198 (198)
T PRK03963        152 LGE-------P-------IETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG  198 (198)
T ss_pred             ECC-------C-------CCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence            552       1       4789999999999999999999999999999999999999997

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=1.2e-34  Score=240.65  Aligned_cols=198  Identities=33%  Similarity=0.447  Sum_probs=170.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (230)
Q Consensus        16 ~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~   95 (230)
                      +|+++|+.+|++|+.+|+++++..+..+..+....+...+++..++++..+.+..|......|+.+|.+|+++|+++|++
T Consensus         1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~   80 (198)
T PF01991_consen    1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE   80 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999997666676666666767777778889999999999999999999999999999999999


Q ss_pred             HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCC
Q 026949           96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG  175 (230)
Q Consensus        96 a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L~~~  175 (230)
                      ++++|.+++.+++.|+.+|.+||.+++..+++++++|+|+|+|.++++.+++.+...|+...|+.++.+..++ .+|   
T Consensus        81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~---  156 (198)
T PF01991_consen   81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYL---  156 (198)
T ss_dssp             HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-ccc---
Confidence            9999999999866799999999999999999899999999999999999877666667654444233444442 222   


Q ss_pred             CCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhc
Q 026949          176 PGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV  225 (230)
Q Consensus       176 ~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF  225 (230)
                              .+|+|||+++++||+|+|||||++||+.+++.+.|+|++.||
T Consensus       157 --------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF  198 (198)
T PF01991_consen  157 --------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF  198 (198)
T ss_dssp             --------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred             --------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence                    379999999999999999999999999999999999999999

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=100.00  E-value=8.9e-32  Score=222.70  Aligned_cols=182  Identities=29%  Similarity=0.458  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~----~~~~~~~k~~~~S~~~~~~R~~~l~ar   85 (230)
                      |+++++.|+++|+.++++|+.+|+.+++    .++.+++.++.+.....    .+++....++..|...+..|+.+|.+|
T Consensus         3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r   78 (188)
T PRK02292          3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR   78 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999988    88888877755544333    344455556778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 026949           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  165 (230)
Q Consensus        86 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~  165 (230)
                      +++|+++|..|+++|.+++.+  .|..+|.+||.++    ++++++|+|+|.|..+++.++..    ++      .+++ 
T Consensus        79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~----~~------~~~~-  141 (188)
T PRK02292         79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSD----YD------GLEY-  141 (188)
T ss_pred             HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHh----cc------cCee-
Confidence            999999999999999999976  7999999999998    45788999999999999988764    22      1222 


Q ss_pred             eccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCC
Q 026949          166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  227 (230)
Q Consensus       166 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~  227 (230)
                       .      +.        .+|.|||||+|++|+|+|||||++||+.++++++|+|++.|||.
T Consensus       142 -~------~~--------~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~  188 (188)
T PRK02292        142 -A------GN--------IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE  188 (188)
T ss_pred             -C------CC--------CCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence             1      11        37899999999999999999999999999999999999999984

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=99.98  E-value=2.4e-30  Score=213.61  Aligned_cols=176  Identities=17%  Similarity=0.288  Sum_probs=151.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER----KEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~----~~~~~~~~k~~~~S~~~~~~R~~~l~ar   85 (230)
                      ++++++.|+++|+.+|++|+.+|+.+++    .|+.++..++....+.    ...++...+++.+|.+...+|+.+|.+|
T Consensus         3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~ar   78 (185)
T PRK01194          3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKR   78 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7899999999999999999999999988    8888887666655433    3456777888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 026949           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  165 (230)
Q Consensus        86 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~  165 (230)
                      +++|+++|+.|.++|.++++++ .|+++|.+||.+++..+ +++++|+|++.|..++++.                 +++
T Consensus        79 ee~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~-----------------~l~  139 (185)
T PRK01194         79 REILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA-----------------KIK  139 (185)
T ss_pred             HHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC-----------------cee
Confidence            9999999999999999999876 89999999999999995 5789999999999988651                 223


Q ss_pred             eccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCC
Q 026949          166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  227 (230)
Q Consensus       166 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~  227 (230)
                      +.     +          .+|.|||||+|.||+|.+||||+++++    +++|.|+..||..
T Consensus       140 ~~-----~----------~~~~GGvil~s~dG~I~ld~~l~~~~~----~~~~~iR~~lf~~  182 (185)
T PRK01194        140 FA-----D----------IDPYGGILAYSRDGKRELDLRLSSIFE----NILEDLKVYFYEN  182 (185)
T ss_pred             eC-----C----------ccccccEEEEeCCCcEEehhhHHHHHH----HhHHHHHHHHHhh
Confidence            22     1          379999999999999999999999775    8889999999963

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.97  E-value=1.7e-29  Score=209.27  Aligned_cols=192  Identities=30%  Similarity=0.452  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL   88 (230)
Q Consensus         9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~   88 (230)
                      .++.++++|.++|+++|++|...|.++++..+......+...++..+.+..++++..+++++|++...+|.++|++++++
T Consensus         3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~   82 (194)
T COG1390           3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI   82 (194)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999666666666666666666777889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEecc
Q 026949           89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH  168 (230)
Q Consensus        89 i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~  168 (230)
                      |+.+|+.+.++|.+++.+| +|.. |..|+.+++..+.+++++|++++.|..++.+++.+.        +   ....+  
T Consensus        83 l~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~~--------~---~~~~~--  147 (194)
T COG1390          83 LESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILREL--------K---IGVEL--  147 (194)
T ss_pred             HHHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhhc--------c---cchhc--
Confidence            9999999999999999998 6666 999999999999999999999999999988776530        1   11112  


Q ss_pred             ccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCC
Q 026949          169 HIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  227 (230)
Q Consensus       169 ~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~  227 (230)
                          ++.        .+|.|||+++++||++.+||||++||+.+++.+.|.|++.||++
T Consensus       148 ----~~~--------~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~  194 (194)
T COG1390         148 ----GEG--------IDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV  194 (194)
T ss_pred             ----ccc--------CCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence                111        47999999999999999999999999999999999999999984

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=99.94  E-value=1.5e-24  Score=180.96  Aligned_cols=194  Identities=21%  Similarity=0.266  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (230)
Q Consensus         3 ~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l   82 (230)
                      +++++.=+++|.+.|..+|+.+|++|+.+|+++|+    .|+.+++.+...-..+..++++..+++..|+.....|+.++
T Consensus         2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll   77 (198)
T PRK01558          2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI   77 (198)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788889999999999999999999999999998    99999998888777777888888888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 026949           83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (230)
Q Consensus        83 ~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~  162 (230)
                      .+++.+++.+...+.+.+.+.. +++.|..++.+|+..++   +++++.|+++++|...+++.+.+   .++...|.   
T Consensus        78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~---  147 (198)
T PRK01558         78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA---ALGNKLKK---  147 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC---
Confidence            9999999865444444445433 44589999999999875   45678999999999998876543   33333332   


Q ss_pred             eEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHh
Q 026949          163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  224 (230)
Q Consensus       163 ~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~L  224 (230)
                      .+++..      .        .+|.|||+|.+.||++.+||||+++.+.+++.+.|.++++|
T Consensus       148 gi~i~~------~--------~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l  195 (198)
T PRK01558        148 GIELKP------F--------KGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI  195 (198)
T ss_pred             CeEEcc------c--------CCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence            234432      1        37999999999999999999999999999999999999987

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=99.90  E-value=2.1e-21  Score=162.45  Aligned_cols=192  Identities=13%  Similarity=0.149  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ   83 (230)
Q Consensus         4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~   83 (230)
                      +.+++=+++|...|+.+|+.+|.+|+.+|+++++    .|+.+++.+...-.+...++++..+++..|+.....|..+|.
T Consensus         8 ~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~   83 (207)
T PRK01005          8 DKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLES   83 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455557888888999999999999999999987    799999988888888888888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC--------cEEEEecccchHHHHHHHHHHHHHHHH
Q 026949           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP--------AVLLRCRKDDHHLVESVLESAKEEYAQ  155 (230)
Q Consensus        84 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~--------e~~v~~~~~D~~lv~~~l~~~~~~~~~  155 (230)
                      +++++++.+|..+.++|..-.-++   ++||.+||...+......        -+...++|.+..-.  +...+...+..
T Consensus        84 aKqevi~~vf~~a~~~lv~~~~~d---~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~~  158 (207)
T PRK01005         84 LKQAVENKIFRESLGEWLEHVLTD---PEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKLKE  158 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHHHH
Confidence            999999999999999997754432   678888888766655321        13345666555432  33333344432


Q ss_pred             hhCCCCCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCC
Q 026949          156 KLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  227 (230)
Q Consensus       156 ~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~  227 (230)
                      .      .|++.                 ...|||+|.+.||++.||||++++++.+|+.+.|.++.+|||+
T Consensus       159 ~------gv~~~-----------------~~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~  207 (207)
T PRK01005        159 K------GVSVG-----------------SFVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG  207 (207)
T ss_pred             c------CeEEe-----------------ccCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence            1      24444                 1269999999999999999999999999999999999999985

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=99.61  E-value=4.8e-13  Score=115.81  Aligned_cols=185  Identities=18%  Similarity=0.172  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHH----HHHHHHHHH-
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL--------------VEAEKKKIRQEYERKEKQ----VEIRKKIEY-   70 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i--------------~~~~~~ki~~~~~~~~~~----~~~~k~~~~-   70 (230)
                      ...-...++.+|+.+|.+|+.+|+.+++.-...+              +++++.   +.|+....+    +.......+ 
T Consensus        38 ~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~---eGy~eG~~~G~~e~~~~~~~~i~  114 (255)
T TIGR03825        38 EEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQ---EGYEAGFQAGESEALSIYQSTID  114 (255)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888888888888888888877433333              222211   112222211    111111000 


Q ss_pred             --HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHH
Q 026949           71 --SMQLNAS----RIKVLQAQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLV  142 (230)
Q Consensus        71 --S~~~~~~----R~~~l~ar~~~i~~v~~~a~~~L~~~-~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv  142 (230)
                        ...+...    ...+-..+.++++-++.-|..=+... ..+    +..+..|+.+++..++. +.++|+|+|.|.+.+
T Consensus       115 ~a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~~----~e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v  190 (255)
T TIGR03825       115 EANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAED----KNAFQALVRQVLSEVREFDEVSIYVHPHWYERV  190 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHhccCCCcEEEEECHHHHHHH
Confidence              0111112    11222345566666666666555554 333    45688999999998877 679999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHH
Q 026949          143 ESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR  221 (230)
Q Consensus       143 ~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~  221 (230)
                      ......+...++...   .+.|..|+  .             -..||++|.|.+|.  ||+|+++||+.+++.++..+.
T Consensus       191 ~~~~~~l~~~~~~~~---~i~i~~D~--~-------------l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l~  249 (255)
T TIGR03825       191 AAQKDELQSILPACE---HLAVYPDE--K-------------LPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEALK  249 (255)
T ss_pred             HHhHHHHHhhcCCCC---ceEEEeCC--C-------------CCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHHh
Confidence            988776655554321   34555553  2             34699999999998  899999999999888876654

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK09098 type III secretion system protein HrpB; Validated

Probab=99.56  E-value=3e-12  Score=109.30  Aligned_cols=180  Identities=18%  Similarity=0.181  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQ   83 (230)
Q Consensus         8 ~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~----~~~~~~~k~~~~S~~~~~~R~~~l~   83 (230)
                      ..+..-.+.|+..|+++|++|+.+|+++++    .|+++++.+.+..+++.    ..++..+-...+.............
T Consensus        35 ~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~----~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~~~  110 (233)
T PRK09098         35 AAVHAERDAVLAAARARAERIVAEARAQAE----AILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAERRAARR  110 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888899999999999999999888    77777766544433322    2322222111111111111112233


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhc--CCCcEEEEecccchHHHHHHHHHHHHHHHHhhCC-C
Q 026949           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL--KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV-H  160 (230)
Q Consensus        84 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l--~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~-~  160 (230)
                      .++++++-++..++.-+...  +    +..|-..+.+++..+  +.+.++|+|+|.|.+.+...+......+    |+ .
T Consensus       111 ~e~~Lv~lv~~~v~kiv~~~--d----~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~~----g~~~  180 (233)
T PRK09098        111 MRERLAEIVAAAVEQIVLGE--D----RAALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAAG----GRNV  180 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHhc----CCCc
Confidence            57788888888888777653  3    344455666777554  2367999999999999998877654433    22 1


Q ss_pred             CCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHH
Q 026949          161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  218 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~  218 (230)
                      .+.|..|  ..|+             .||+++.+..|.  ||+||++||+.+.+-+..
T Consensus       181 ~l~Iv~D--p~L~-------------~GgCviET~~G~--IDasl~~ql~~L~~al~~  221 (233)
T PRK09098        181 PVEVVGD--PRLA-------------PGACVCEWDFGV--FDASLDTQLRALRRALAR  221 (233)
T ss_pred             ceEEEeC--CCCC-------------CCCeEEEeCCCe--EecCHHHHHHHHHHHHHH
Confidence            2345555  3443             599999999998  899999999977766544

>PRK06937 type III secretion system protein; Reviewed

Probab=99.54  E-value=3.5e-12  Score=106.97  Aligned_cols=170  Identities=14%  Similarity=0.188  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (230)
Q Consensus        14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~   93 (230)
                      ...|+.+|+++|++|+..|+++++.    ..+++       |+....++..+....+...............+++++=++
T Consensus        32 A~~il~~A~~~A~~i~~~A~~~~e~----~~~~G-------y~~G~~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl  100 (204)
T PRK06937         32 AEELVEAARQRAEEIEAEAQEVYEQ----QKQLG-------YQAGLDEARTEQAELILETVLQCQEFYRGVEQQMSEVVL  100 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999998873    22222       222222222111111111112222223344566777666


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 026949           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL  172 (230)
Q Consensus        94 ~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L  172 (230)
                      .-+++=+..+.     -+.++..++.+++..+.+ +.++|+|+|.|.+.+...+......+++. +  .+.|..|+  .|
T Consensus       101 ~ia~kil~~~~-----~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~~-~--~l~i~~D~--~L  170 (204)
T PRK06937        101 EAVRKILNDYD-----DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPEV-G--YLEVVADA--RL  170 (204)
T ss_pred             HHHHHHHhccC-----cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCCC-c--cEEEEeCC--CC
Confidence            66655555432     267888999999998876 67999999999999998777655555431 1  24566663  33


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHH
Q 026949          173 PPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE  219 (230)
Q Consensus       173 ~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~  219 (230)
                                   ..||++|.+..|.  ||+||++||+.+.+.+...
T Consensus       171 -------------~~Ggc~iET~~G~--vDasl~tql~~l~~al~~~  202 (204)
T PRK06937        171 -------------DQGGCILETEVGI--IDASLDGQLEALEQAFHST  202 (204)
T ss_pred             -------------CCCCeEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence                         4699999999998  8999999999888776543

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=99.48  E-value=5.5e-11  Score=104.31  Aligned_cols=111  Identities=19%  Similarity=0.316  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 026949           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (230)
Q Consensus        84 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~  162 (230)
                      ...++++-++.-|..-+..+..+   .+.++..++.+++..+.+ +.++|+|+|.|.+++...+..+...+....   ++
T Consensus       164 ~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~~---~i  237 (281)
T PRK06669        164 SEEEIVELALDIAKKVIKEISEN---SKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNEE---HL  237 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCCC---Ce
Confidence            55667777777777666444433   588889999999998876 679999999999999998887766665322   45


Q ss_pred             eEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949          163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (230)
Q Consensus       163 ~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      .|..|+  .|             ..|||+|.+.+|.  ||+|+++||+.+++.+.
T Consensus       238 ~I~~D~--~l-------------~~GgcvIet~~G~--IDasi~tqLe~l~~~L~  275 (281)
T PRK06669        238 KIYEDD--AI-------------SKGGCVIETDFGN--IDARIDTQLKQLKEKLL  275 (281)
T ss_pred             EEEECC--CC-------------CCCCeEEEcCCCe--eeccHHHHHHHHHHHHH
Confidence            666663  22             3599999999998  89999999998887664

>PRK06328 type III secretion system protein; Validated

Probab=99.46  E-value=6.9e-11  Score=100.41  Aligned_cols=174  Identities=16%  Similarity=0.180  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (230)
Q Consensus        14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~   93 (230)
                      .+.|+..|+++|++|+.+|.++++    ++.++++.   +.|+....+...... .........+   -...+++++-++
T Consensus        31 A~~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~---eGy~eG~~~~~~~~~-~l~~~~~~~~---~~~e~~lv~Lal   99 (223)
T PRK06328         31 AQELLEKTKEDSEAYTQETHEECE----KLREEAKN---QGFKEGSKAWSKQLA-FLEEETQKLR---EQVKEALVPLAI   99 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHH
Confidence            467899999999999999999988    55544432   233333222111110 0111111111   223567777777


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 026949           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL  172 (230)
Q Consensus        94 ~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L  172 (230)
                      .-|+.=+..-...   -++.+..++.+++..+.. ..++|+|+|.|.+++....+.+...+++..   .+.|..|+  .|
T Consensus       100 ~ia~kVi~~el~~---d~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~~---~~~I~~D~--~L  171 (223)
T PRK06328        100 ASVKKIIGKELEL---HPETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYAD---SLIISPKA--DV  171 (223)
T ss_pred             HHHHHHHHHHHhh---CHHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCCC---ceEEEeCC--CC
Confidence            7777666553322   157777999999988866 579999999999999988776665555432   45677663  33


Q ss_pred             CCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHH
Q 026949          173 PPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR  221 (230)
Q Consensus       173 ~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~  221 (230)
                                   -.||++|.+..|.  ||+|+++||+.+.+.+...+.
T Consensus       172 -------------~~GgCiIET~~G~--VDasle~ql~~l~~al~~~l~  205 (223)
T PRK06328        172 -------------TPGGCIIETEAGI--INAQLDVQLAALEKAFSTILK  205 (223)
T ss_pred             -------------CCCCeEEEeCCce--EEecHHHHHHHHHHHHHHHHc
Confidence                         3599999999998  899999999988776655443

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=99.25  E-value=2.5e-09  Score=86.31  Aligned_cols=149  Identities=18%  Similarity=0.140  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKV-LQAQDDLVSN   91 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~-l~ar~~~i~~   91 (230)
                      -...|+++|+.+|+.|+..|+++++..+..-.+++......+....+.           .... .+..+ -.....+++-
T Consensus        14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~-----------~~~~-~~~~~~~~~e~~l~~l   81 (166)
T TIGR02499        14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLA-----------EWQQ-EAEQLEASLEERLAEL   81 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-HHHHHHHHHHHHHHHH
Confidence            577899999999999999999998854433333333222222221111           1111 11111 1123334433


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEecccc
Q 026949           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI  170 (230)
Q Consensus        92 v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~  170 (230)
                      ++.-++.=|...     ..+.++..++.+++..+.+ +.++|+|+|.|.+.+...+......    .   +++|..|+  
T Consensus        82 ~~~~~~kil~~~-----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~~----~---~~~i~~D~--  147 (166)
T TIGR02499        82 VLQALEQILGEY-----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLAL----E---PWELEPDA--  147 (166)
T ss_pred             HHHHHHHHhCCC-----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhcc----C---CeEEeeCC--
Confidence            333333333332     2467888888888887776 6799999999999999887743211    1   13555552  


Q ss_pred             CCCCCCCCCCCCCCCcccceEEEecCCcEE
Q 026949          171 YLPPGPGHHNAHGPSCSGGVVVASRDGKIV  200 (230)
Q Consensus       171 ~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~  200 (230)
                      .             -..||++|.+.+|.|.
T Consensus       148 ~-------------l~~G~c~vet~~G~vd  164 (166)
T TIGR02499       148 S-------------LAPGACVLETESGVVD  164 (166)
T ss_pred             C-------------CCCCCEEEEeCCceee
Confidence            2             3579999999999853

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.22  E-value=1.9e-08  Score=86.11  Aligned_cols=185  Identities=17%  Similarity=0.186  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 026949            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE--IRKKIEYSMQLNASRIK   80 (230)
Q Consensus         3 ~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~--~~k~~~~S~~~~~~R~~   80 (230)
                      +++..+.+......+...+++.++.|...+++-|+    ...+.+.....++..   .+..  ..-...++...+ ....
T Consensus        39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~eG~~~g~---~~~~~~e~~~~li~~~~~-~~~~  110 (234)
T COG1317          39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEEGFEEGQ---EEGRVLERLAKLIAEFQA-ELEA  110 (234)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHH
Confidence            34567778888888999999999999988888766    444444333222211   1110  011111111111 1111


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-C-cEEEEecccchHHHHHHHHHHHHHHHHhh
Q 026949           81 VL-QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-P-AVLLRCRKDDHHLVESVLESAKEEYAQKL  157 (230)
Q Consensus        81 ~l-~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~-e~~v~~~~~D~~lv~~~l~~~~~~~~~~~  157 (230)
                      +. .....+++-++.-+++=|......   -+..|..++.+++..... + .++++|+|.|.++++..++.+...    .
T Consensus       111 ~~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~----~  183 (234)
T COG1317         111 LKEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSL----L  183 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhh----c
Confidence            11 245567777777777777666544   378899999999987766 3 799999999999999988754433    3


Q ss_pred             CCCCCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHH
Q 026949          158 QVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI  220 (230)
Q Consensus       158 g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I  220 (230)
                      ++ .++|..|+  .|             -.||+++++..|.  +|-|+++||..+.+.+.+..
T Consensus       184 ~~-~l~l~~D~--~l-------------~~GgC~IeTe~G~--iDasld~ql~~L~~~~~~~~  228 (234)
T COG1317         184 GW-RLELVADP--AL-------------SPGGCIIETEFGI--IDASLDTQLAALKRALLESL  228 (234)
T ss_pred             ch-heeeccCC--CC-------------CCCCeEEEecCcc--ccccHHHHHHHHHHHHHhhh
Confidence            33 12244442  33             4699999999998  79999999998888777654

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=99.04  E-value=2e-07  Score=80.40  Aligned_cols=171  Identities=12%  Similarity=0.171  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS   90 (230)
Q Consensus        11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~   90 (230)
                      ..-....+++|+.++.+|+.+|+.+++..+..++++++.++....+....+++.++....           -..+.++++
T Consensus        59 ~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~-----------~~l~~ei~~  127 (246)
T TIGR03321        59 RREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALS-----------DELRRRTGA  127 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence            334556777899999999999999999888888888877776655555444444333222           122333444


Q ss_pred             HHHHHHHHHHHhhccChhHHHHHHHHHHHH--------------HHHhcCCCcEEEE-ecccchHHHHHHHHHHHHHHHH
Q 026949           91 NMMEAASKEVLNVSRDHNSYKKLLKGLIVQ--------------SLLRLKEPAVLLR-CRKDDHHLVESVLESAKEEYAQ  155 (230)
Q Consensus        91 ~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e--------------a~~~l~~~e~~v~-~~~~D~~lv~~~l~~~~~~~~~  155 (230)
                      -++..|..-|....... ....++...|.+              ++.. ++..++|+ ..|=+......+...    +..
T Consensus       128 la~~~A~kil~~~~d~~-~~~~lid~~i~~l~~l~~~~~~~l~~~~~~-~~~~~~v~sa~~l~~~~~~~i~~~----l~~  201 (246)
T TIGR03321       128 EVFAIARKVLTDLADTD-LEERMVDVFVQRLRTLDPDEKAALAEALAD-SGNPVLVRSAFELPEEQREQIRDT----IRE  201 (246)
T ss_pred             HHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHhC-CCCceEEEecCCCCHHHHHHHHHH----HHH
Confidence            44444444333322111 222232222221              1111 12234443 333333333333333    333


Q ss_pred             hhCCC-CCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949          156 KLQVH-PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (230)
Q Consensus       156 ~~g~~-~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      .+|+. .+++.+|                ++.+|||+|..  |..++|+|+.++|+.+...+
T Consensus       202 ~~~~~v~~~~~vd----------------p~ligGi~l~~--g~~~id~Si~~~L~~l~~~~  245 (246)
T TIGR03321       202 TLGPEIRLRFQTE----------------PDLIGGIELTA--GGHKLAWSVDDYLESLEEDV  245 (246)
T ss_pred             HHCCCeeEEeeeC----------------chhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence            33431 2333344                37899999997  88999999999999877653

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=98.95  E-value=3e-07  Score=76.42  Aligned_cols=153  Identities=21%  Similarity=0.310  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (230)
Q Consensus        12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~   91 (230)
                      .....|+++|+.+|++|+.+|+++|+    .+++.+...+...+-....       ..+. .....|..+...-...+..
T Consensus        30 ~~a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~-------~ll~-~~~~~~e~l~~~l~~~~~~   97 (191)
T PF06188_consen   30 QQAREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQAN-------ALLQ-EWQQQREQLLQQLEEQAEE   97 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHHH
Confidence            35589999999999999999999998    6766555444433322111       0111 1112233444555666677


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 026949           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY  171 (230)
Q Consensus        92 v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~  171 (230)
                      ++..+..+|..-...+..+..++..|+...   .+...++++|+|.+.+-|..++.+    ++. .   .+++..|  .+
T Consensus        98 ll~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~----~~~-~---~w~l~~D--~s  164 (191)
T PF06188_consen   98 LLSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAE----HPA-L---HWQLQAD--ES  164 (191)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHh----CCC-c---ceeeccC--CC
Confidence            777777777664444446777787776554   345689999999999999988874    321 1   3566666  34


Q ss_pred             CCCCCCCCCCCCCCcccceEEEecCCcEEEe
Q 026949          172 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCE  202 (230)
Q Consensus       172 L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vd  202 (230)
                      |+             .|..++.+..|.+.+|
T Consensus       165 l~-------------~~~l~L~t~~G~~~l~  182 (191)
T PF06188_consen  165 LA-------------PDQLKLETANGEFRLD  182 (191)
T ss_pred             CC-------------CCceEEEcCCCcEEEC
Confidence            54             4889999999996655

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.87  E-value=3e-07  Score=78.79  Aligned_cols=103  Identities=11%  Similarity=0.193  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC--CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 026949           85 QDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP  161 (230)
Q Consensus        85 r~~~i~~v~~~a~~~L~~~-~~~~~~Y~~~L~~Li~ea~~~l~~--~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~  161 (230)
                      ++.+++-++.-|+.-+..- ..+    +..+..++.+++..+..  ..++|+|+|.|..+++..+.+.      ..   .
T Consensus       121 ~~~ll~La~~iA~~vi~~el~~~----p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~------~~---~  187 (236)
T PRK13386        121 RDELLDLVEKVTRQVIRCELTLQ----PQQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK------VQ---A  187 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc------cc---C
Confidence            4455555555555555442 333    56677999999999864  5799999999999998766531      11   4


Q ss_pred             CeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949          162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (230)
Q Consensus       162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      ++|..|+  .|             -.||++|.+.+|.  ||.|+++||+.+.+.+.
T Consensus       188 ~~l~~D~--~l-------------~~GgC~Iet~~g~--iDa~ietRl~~~~~~l~  226 (236)
T PRK13386        188 WGLVADP--SL-------------SAGECRIVTDTSE--ADAGCEHRLDACMDAVK  226 (236)
T ss_pred             eEEEeCC--Cc-------------CCCCEEEEeCCce--EeeCHHHHHHHHHHHHH
Confidence            6777774  33             3699999998888  89999999987655543

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=98.83  E-value=2.9e-07  Score=70.75  Aligned_cols=101  Identities=22%  Similarity=0.325  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH-HhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 026949           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL-LRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP  161 (230)
Q Consensus        84 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~-~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~  161 (230)
                      .++++++-++.-|..-+......   -+..+..+|.+++ ..+.. +.++|+|+|+|.+.++..+.+....+       +
T Consensus        25 ~~~~l~~l~~~iae~vi~~~l~~---~~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~~-------~   94 (128)
T PF02108_consen   25 LEQELVELALAIAEKVIGRELEE---DPEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPEL-------G   94 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhhc-------C
Confidence            56667777777666666543222   2567778888888 44444 57999999999999998877432222       3


Q ss_pred             CeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHH
Q 026949          162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV  211 (230)
Q Consensus       162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~  211 (230)
                      ++|..|+  .|             -.||++|.+.+|.  ||.|+++||+.
T Consensus        95 ~~l~~D~--~l-------------~~G~c~iet~~g~--iD~~i~~ql~~  127 (128)
T PF02108_consen   95 WELVADP--SL-------------APGDCRIETEDGI--IDASIETQLEA  127 (128)
T ss_pred             CEEEecC--CC-------------CCCCEEEEECCee--EEeCHHHHHhc
Confidence            5777774  33             3599999998887  89999999974

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=98.81  E-value=3e-06  Score=72.93  Aligned_cols=107  Identities=24%  Similarity=0.302  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 026949           85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (230)
Q Consensus        85 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~--~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~  162 (230)
                      .+.+++-++.-|+.-+......   -+..+..+|.+++..+.  .+.++|+|+|.|..+++..+..   .+. ..   ++
T Consensus       134 e~~Lv~Lal~ia~~vi~~el~~---~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~---~~~-~~---~~  203 (246)
T PRK05687        134 ESRLVQLALELARQVIGQELKT---DPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGA---ELS-LH---GW  203 (246)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcc---CHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhh---HHH-hC---Ce
Confidence            4556666666666655543322   25677789999999874  3579999999999999987763   222 12   46


Q ss_pred             eEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHH
Q 026949          163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  218 (230)
Q Consensus       163 ~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~  218 (230)
                      +|..|+  .|             -.||++|.+.+|.  ||.|+++||+.+.+.+.+
T Consensus       204 ~l~~D~--~l-------------~~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~  242 (246)
T PRK05687        204 RLLADP--SL-------------HRGGCRISAEEGD--VDASLETRWQEVCRLLAP  242 (246)
T ss_pred             EEEeCC--Cc-------------CCCCeEEEeCCCc--eeccHHHHHHHHHHHHhc
Confidence            777774  33             3699999999998  799999999988877653

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=98.57  E-value=3e-05  Score=64.79  Aligned_cols=110  Identities=13%  Similarity=0.070  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 026949           84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP  161 (230)
Q Consensus        84 ar~~~i~~v~~~a~~~L~~~-~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~  161 (230)
                      .++++++=++.-++.-+... ..+|   ...+..++.+++..+.+ +.++|+|+|.|.+.++..+......++. .|  .
T Consensus        85 ~~~~lv~La~~iarkvi~~~l~~~p---~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~~~-~~--~  158 (199)
T PRK06032         85 METEAADLALAVARKIAGAALAAEP---LAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESGF-EG--R  158 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhcCc-Cc--c
Confidence            34455555555555555443 3332   23577788888887766 5699999999999999888765444331 11  2


Q ss_pred             CeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949          162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (230)
Q Consensus       162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      +.|..|  ..|+             .||++|.+.+|+  +|+|+.+++..+.+-+
T Consensus       159 ~~l~~D--~~L~-------------~G~c~vet~~G~--vd~d~~~~~~~I~~al  196 (199)
T PRK06032        159 LVVLAD--PDMA-------------PGDCRLEWADGG--VVRDRAAIEARIEEAV  196 (199)
T ss_pred             EEEeeC--CCCC-------------CCCeEEEeCCCe--EecCHHHHHHHHHHHh
Confidence            444444  3443             599999999999  7888888888766543

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=98.49  E-value=6.7e-05  Score=62.45  Aligned_cols=167  Identities=19%  Similarity=0.188  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (230)
Q Consensus        15 ~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~   94 (230)
                      ..+...|+..|..|...|+..|+.++.+           .|+....+...+--+.++...-.....+..-.+++.+=++.
T Consensus        33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rar-----------GyeeG~~~g~e~~A~llaqa~a~v~r~~a~LE~~l~~LVl~  101 (207)
T PF06635_consen   33 AAFLAAARREAQRIREWARAAYERERAR-----------GYEEGRRAGAEQAARLLAQATAEVARYLAGLEQELAELVLE  101 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888888743322           23222222111111112222111111344455778888888


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCC
Q 026949           95 AASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP  173 (230)
Q Consensus        95 ~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L~  173 (230)
                      -+.+=|..|..     .++|.+.+.+++..+-. ..++|+|+|.|.+.+...+..+. .+   .|.  .+|.|..+..|+
T Consensus       102 ~Vr~ILg~fd~-----~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~~---~g~--~~i~I~aDp~La  170 (207)
T PF06635_consen  102 IVRKILGEFDP-----DELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-GR---PGR--PKIRIVADPRLA  170 (207)
T ss_pred             HHHHHHhcCCh-----HHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-cc---CCC--CceeeecCCCCC
Confidence            88887778854     56777888888877665 57999999999999988776542 22   232  244444334554


Q ss_pred             CCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHH
Q 026949          174 PGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP  218 (230)
Q Consensus       174 ~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~  218 (230)
                                   .|.+|+.|.-|.  ||-+|++-|+-++.-+.|
T Consensus       171 -------------~~~Cvlese~G~--VdagL~aQL~ALr~a~~~  200 (207)
T PF06635_consen  171 -------------AGQCVLESEFGV--VDAGLDAQLRALRLAFGP  200 (207)
T ss_pred             -------------CCCeeeecccch--hhccHHHHHHHHHHHhcc
Confidence                         489999999998  799999999988877665

The function of this family is unclear.; GO: 0009877 nodulation

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=98.28  E-value=2.6e-05  Score=63.45  Aligned_cols=91  Identities=16%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i   89 (230)
                      +..-...++.+|+.+|.+|+..|+.+++..+..++++++..+....+           ...+......+..+...|++++
T Consensus        75 ~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~-----------~a~~~ie~Ek~~a~~elk~eii  143 (167)
T PRK08475         75 KKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIK-----------SFEELMEFEVRKMEREVVEEVL  143 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677888888888888888888887776776665555433322           2334444455667788999999


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHH
Q 026949           90 SNMMEAASKEVLNVSRDHNSYKKLLKG  116 (230)
Q Consensus        90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~  116 (230)
                      +++|+.   +|.+++.+  .|.+++.+
T Consensus       144 ~~~~~~---~~~~l~~~--~y~~~~~~  165 (167)
T PRK08475        144 NELFES---KKVSLNQQ--EYVNILLK  165 (167)
T ss_pred             HHHHHh---hhcCCCHH--HHHHHHhc
Confidence            999999   88888876  79999865

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=98.24  E-value=0.0011  Score=57.43  Aligned_cols=166  Identities=15%  Similarity=0.149  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (230)
Q Consensus        14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~   93 (230)
                      -..-+++|+.++.+|+.+|+.+++.++..++.+++..+....++...+++.+++.           ..-..+.++.+-++
T Consensus        62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~-----------a~~~L~~~v~~la~  130 (250)
T PRK14474         62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQE-----------FFKALQQQTGQQMV  130 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            3445668888888888888888888888887777766655554443333333322           22233455566666


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHH----------HH--hcCCCcEEEEe----cccchHHHHHHHHHHHHHHHH-h
Q 026949           94 EAASKEVLNVSRDHNSYKKLLKGLIVQS----------LL--RLKEPAVLLRC----RKDDHHLVESVLESAKEEYAQ-K  156 (230)
Q Consensus        94 ~~a~~~L~~~~~~~~~Y~~~L~~Li~ea----------~~--~l~~~e~~v~~----~~~D~~lv~~~l~~~~~~~~~-~  156 (230)
                      .-|..-|.+..... ....++...+.+-          +.  .-++..++|+.    .|.+...+...+.       . .
T Consensus       131 ~~A~kiL~~~~d~~-~~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~-------~~~  202 (250)
T PRK14474        131 KIIRAALADLANAT-LEQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLH-------QTH  202 (250)
T ss_pred             HHHHHHHHhhcCHH-HHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHH-------HHh
Confidence            66666665544332 3444444444221          11  01222344442    2333333333333       2 2


Q ss_pred             hCCCCCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHh
Q 026949          157 LQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK  215 (230)
Q Consensus       157 ~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~  215 (230)
                      .|. ++.+.+..      +        ++.++|+-+..  |+-.|.|||++-|+..-+.
T Consensus       203 ~~~-~~~~~f~~------~--------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~  244 (250)
T PRK14474        203 LIP-GTDIHFVT------S--------PELICGIELKT--EGYKIAWTLAEYLDALESQ  244 (250)
T ss_pred             cCC-CCceeeec------C--------cccccCeEEec--CCceEeccHHHHHHHHHHH
Confidence            233 33444432      1        37799999997  6677999999999865443

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=97.50  E-value=0.045  Score=46.06  Aligned_cols=61  Identities=20%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE   69 (230)
Q Consensus         5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~   69 (230)
                      +.-...+.-...|+.+|+.+|++|+.+|+.+++    +++..++.++..+..+....+++..+..
T Consensus        20 eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~~R~~   80 (207)
T PRK01005         20 ETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQAGKRS   80 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556778889999999999999999999987    8988888888888777666666554433

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=97.16  E-value=0.0062  Score=49.98  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=27.9

Q ss_pred             CCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (230)
Q Consensus       184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      ++++|||++..  |.-++|.|+.++|+.+...+.
T Consensus       147 pslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~  178 (179)
T PRK13436        147 PKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL  178 (179)
T ss_pred             HHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence            48999999997  888899999999998877653

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=97.09  E-value=0.035  Score=41.52  Aligned_cols=66  Identities=18%  Similarity=0.147  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN   75 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~   75 (230)
                      .+.--..++.+|+.++..|+..|..+++..+..++.++......-.+....+++..+...++....
T Consensus        11 aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~   76 (103)
T PRK08404         11 AEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEK   76 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455667777777777777777777766666666665555544444444555555444444333

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=97.00  E-value=0.07  Score=43.47  Aligned_cols=95  Identities=8%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v   92 (230)
                      -....+++|+.+|.+|+..|+.+++..+..++.++...+....+.....++..+           ....-..+.++++.+
T Consensus        75 ~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~-----------~~a~~~l~~qi~~la  143 (174)
T PRK07352         75 EAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQ-----------ERVIAQLRREAAELA  143 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            445567888888888888888888877767766665555443333322222222           223344567888888


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHH
Q 026949           93 MEAASKEVLNVSRDHNSYKKLLKGLIV  119 (230)
Q Consensus        93 ~~~a~~~L~~~~~~~~~Y~~~L~~Li~  119 (230)
                      +..|...|..-..+. ....++...|.
T Consensus       144 ~~~A~kil~~~l~~~-~~~~li~~~i~  169 (174)
T PRK07352        144 IAKAESQLPGRLDED-AQQRLIDRSIA  169 (174)
T ss_pred             HHHHHHHHHhHcCHH-HHHHHHHHHHH
Confidence            888888887644332 45555544443

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=96.98  E-value=0.034  Score=46.41  Aligned_cols=59  Identities=24%  Similarity=0.222  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK   67 (230)
Q Consensus         5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~   67 (230)
                      +.-.+-+.-...|+++|+++|++|+.+|+++++    .|+..+...+..........+...++
T Consensus        15 ~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe----~i~~kAe~ea~~~~~~~~saa~l~~r   73 (198)
T PRK01558         15 DGLEEAERLANEIILEAKEEAEEIIAKAEEEAK----ELKAKAEKEANDYKRHALEASRQAGR   73 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566778899999999999999999999988    77777776666443443444444333

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=96.95  E-value=0.072  Score=44.12  Aligned_cols=129  Identities=16%  Similarity=0.204  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 026949            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--------IEYSMQLN   75 (230)
Q Consensus         4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~--------~~~S~~~~   75 (230)
                      .++.++.+.-.+.|+.+|+.+|++|+.+|.++++.+...++..++..+..+..+....+..+.+        ..++....
T Consensus         9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~   88 (198)
T PRK03963          9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLE   88 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677888999999999999999999999999888889888887777665554444333222        22233334


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHHHHHHHhcCCCcEEEEec
Q 026949           76 ASRIKVLQ----AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCR  135 (230)
Q Consensus        76 ~~R~~~l~----ar~~~i~~v~~~a~~~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~  135 (230)
                      .++.++.+    ....++..++..+...|..    +..+|.+ ..++..++.+....++  .+.+.+.
T Consensus        89 ~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D-~~~~~~~~~~~~~~~~--~~~i~~~  153 (198)
T PRK03963         89 AVRERLAELPEDEYFETLKALTKEAVEELGEDKVVVRSNERT-LKLIDSRLEEIRDELG--DVEIELG  153 (198)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCcEEEEEcccc-HHHHHHHHHHHHHHhC--CeEEEEC
Confidence            44433322    1335666666666666542    2223312 2466666555444443  4455544

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=96.87  E-value=0.11  Score=42.38  Aligned_cols=97  Identities=20%  Similarity=0.261  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (230)
Q Consensus        12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~   91 (230)
                      .-....+.+|+.+|.+|+..|..+++..+..++.++...+....+....+++.+++.           .+-..+.++.+-
T Consensus        71 ~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~-----------a~~el~~ei~~l  139 (173)
T PRK13460         71 KDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGK-----------ALSQLQNQIVEM  139 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            345566788888888888888888886666666666555544433333332222221           223345667777


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 026949           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (230)
Q Consensus        92 v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e  120 (230)
                      ++.-|..-|.+.... +....++...|.+
T Consensus       140 A~~~a~kil~~~l~~-~~~~~lid~~i~~  167 (173)
T PRK13460        140 TITIASKVLEKQLKK-EDYKAFIETELAK  167 (173)
T ss_pred             HHHHHHHHHHHHCCH-HHHHHHHHHHHHH
Confidence            777777777664432 2445555444443

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=96.87  E-value=0.092  Score=44.08  Aligned_cols=99  Identities=20%  Similarity=0.140  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i   89 (230)
                      +..-.+..+++|+.+|.+|+..|+.+++..+..++.+++.++....+....+++.++           +......+.++.
T Consensus       101 ~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek-----------~~a~~~Lk~ei~  169 (205)
T PRK06231        101 LLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKER-----------RELKEQLQKESV  169 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            334456677888888888888888888866666666555544433333322222222           112234466677


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 026949           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (230)
Q Consensus        90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e  120 (230)
                      +-...-|..-|.+-. +++....++.+.|.+
T Consensus       170 ~lAv~iA~kiL~k~l-d~~~~~~lI~~~i~~  199 (205)
T PRK06231        170 ELAMLAAEELIKKKV-DREDDDKLVDEFIRE  199 (205)
T ss_pred             HHHHHHHHHHHHhhC-CHHHHHHHHHHHHHH
Confidence            777777777666543 222455555555543

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=96.84  E-value=0.055  Score=44.68  Aligned_cols=63  Identities=11%  Similarity=0.138  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK   66 (230)
Q Consensus         4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k   66 (230)
                      .++.++.+.-...|+.+|+.+|++|+.+|+++++..+..+.......+....++....+++..
T Consensus         8 ~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~   70 (185)
T PRK01194          8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEA   70 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            456777888899999999999999999999999988888888877777777777766655543

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=96.81  E-value=0.13  Score=42.36  Aligned_cols=97  Identities=16%  Similarity=0.187  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (230)
Q Consensus        12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~   91 (230)
                      .-....+.+|+.+|.+|+..|+.+++..+..++.++...+....+....+++.+++           ...-..+.++.+-
T Consensus        79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~-----------~a~~~l~~ei~~l  147 (184)
T CHL00019         79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQ-----------RAINQVRQQVFQL  147 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            34456788888888888888888888777777777666655444433333322222           1334456777788


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 026949           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (230)
Q Consensus        92 v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e  120 (230)
                      ++..|..-|.+.. +++.-..++...|.+
T Consensus       148 av~~A~kil~~~l-d~~~~~~lid~~i~~  175 (184)
T CHL00019        148 ALQRALGTLNSCL-NNELHLRTINANIGL  175 (184)
T ss_pred             HHHHHHHHHHhHc-CHHHHHHHHHHHHHH
Confidence            8888888777754 322455555555544

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=96.81  E-value=0.037  Score=45.55  Aligned_cols=58  Identities=24%  Similarity=0.239  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ   61 (230)
Q Consensus         4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~   61 (230)
                      +++.++-+.-.+.|+.+|+.++++|+.+|+++++..+..+...+.........+....
T Consensus         8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~   65 (188)
T PRK02292          8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSS   65 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999999999999999999998555555555544444444333333

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=96.77  E-value=0.14  Score=41.21  Aligned_cols=99  Identities=11%  Similarity=0.125  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i   89 (230)
                      +..-....+.+|+.+|.+|+..|..+++..+..++.++..++....+....+++..+..           ..-..+.++.
T Consensus        61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~-----------a~~~L~~~i~  129 (164)
T PRK14473         61 AKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQR-----------MLSELKSQIA  129 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence            44455677788888888888888888887777777776666554444433333333221           2233455666


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 026949           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ  120 (230)
Q Consensus        90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e  120 (230)
                      +-.+.-|..-|..-. +++....++...|.+
T Consensus       130 ~la~~~a~kil~~~l-~~~~~~~li~~~i~~  159 (164)
T PRK14473        130 DLVTLTASRVLGAEL-QARGHDALIAESLAA  159 (164)
T ss_pred             HHHHHHHHHHHHhHc-CHHHHHHHHHHHHHh
Confidence            666666666554422 222455555554443

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=96.69  E-value=0.18  Score=40.32  Aligned_cols=97  Identities=13%  Similarity=0.121  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS   90 (230)
Q Consensus        11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~   90 (230)
                      ..-....+.+|+.+|.+|+.+|+.+++..+..++.++...+..-.+....+++..+.           ......+.++.+
T Consensus        59 ~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~-----------~a~~~l~~ei~~  127 (159)
T PRK13461         59 KLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE-----------KAEYEIKNQAVD  127 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            334466778888888888888888888777777777666554444333222222221           122334556666


Q ss_pred             HHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 026949           91 NMMEAASKEVLNVSRDHNSYKKLLKGLIV  119 (230)
Q Consensus        91 ~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~  119 (230)
                      -.+.-|..-|...... +....++...|.
T Consensus       128 lA~~~a~kil~~~~~~-~~~~~li~~~i~  155 (159)
T PRK13461        128 LAVLLSSKALEESIDE-SEHRRLIKDFIS  155 (159)
T ss_pred             HHHHHHHHHHHhHcCH-HHHHHHHHHHHh
Confidence            6666666666554432 244444444443

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=96.68  E-value=0.049  Score=47.70  Aligned_cols=31  Identities=32%  Similarity=0.531  Sum_probs=27.5

Q ss_pred             CCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (230)
Q Consensus       184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      ++++|||+|.-  |.-++|+|+.++|+.+...+
T Consensus       239 psLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L  269 (271)
T PRK13430        239 PSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL  269 (271)
T ss_pred             ccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence            38999999997  88899999999999887765

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=96.64  E-value=0.021  Score=46.98  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             CCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (230)
Q Consensus       184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      ++++|||++..  |..++|.|+.++|+.+...+.
T Consensus       143 psLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~  174 (184)
T PRK13434        143 KNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML  174 (184)
T ss_pred             hHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            48899999997  888899999999999888774

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=96.58  E-value=0.2  Score=37.71  Aligned_cols=47  Identities=30%  Similarity=0.333  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026949           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (230)
Q Consensus        11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~   57 (230)
                      ..-...|..+|+.+|.+|+.+|+.++...++.+++.+...+..+-..
T Consensus        27 kEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~e   73 (108)
T COG2811          27 KEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEE   73 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555566666666665555555555555554444443333

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=96.51  E-value=0.039  Score=51.64  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=27.5

Q ss_pred             CCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (230)
Q Consensus       184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      ++++|||+|.-  |..++|.|+.+||+.+...+
T Consensus       413 psLiGGivI~v--Gd~viD~Sv~~rL~~l~~~l  443 (445)
T PRK13428        413 PELLGGLSIAV--GDEVIDGTLSSRLAAAEAQL  443 (445)
T ss_pred             chhhCceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence            48999999997  88999999999999887654

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=96.46  E-value=0.31  Score=39.71  Aligned_cols=94  Identities=15%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v   92 (230)
                      --+..+.+|+.+|.+|+..|+.+++..+..++.++...+....+....+++.++           ....-..+.++.+-.
T Consensus        74 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~-----------~~a~~~l~~~i~~lA  142 (175)
T PRK14472         74 KNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEK-----------RRALDVLRNEVADLA  142 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            345566777777777777777777755555555554444333322222222111           112233455555666


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHH
Q 026949           93 MEAASKEVLNVSRDHNSYKKLLKGLI  118 (230)
Q Consensus        93 ~~~a~~~L~~~~~~~~~Y~~~L~~Li  118 (230)
                      +..|..-|...... +....++...|
T Consensus       143 ~~~a~kil~~~l~~-~~~~~li~~~i  167 (175)
T PRK14472        143 VKGAEKIIRTSLDA-DKQKKVVDSMI  167 (175)
T ss_pred             HHHHHHHHHHHCCH-HHHHHHHHHHH
Confidence            66666555554322 23444444443

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=96.44  E-value=0.32  Score=38.55  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i   89 (230)
                      +..-....+.+|+.++.+|+..|..+++..+..++..+...+....+....++...+           ....-..+.+++
T Consensus        57 ~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~-----------~~a~~~l~~~~~  125 (156)
T PRK05759         57 AQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQER-----------KRAREELRKQVA  125 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            344556677788888888888888888766666666655554433333322222221           112234456666


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 026949           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLI  118 (230)
Q Consensus        90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li  118 (230)
                      +-++.-|..-|...... +.-..++...|
T Consensus       126 ~lA~~~a~k~l~~~~d~-~~~~~~i~~~i  153 (156)
T PRK05759        126 DLAVAGAEKILGRELDA-AAQSDLIDKLI  153 (156)
T ss_pred             HHHHHHHHHHHHhHcCH-HHHHHHHHHHH
Confidence            77777776666654322 23444444444

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=96.35  E-value=0.41  Score=38.49  Aligned_cols=99  Identities=15%  Similarity=0.122  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i   89 (230)
                      +..-.+..+.+|+.++.+|+..|+.+++..+..++.++..++....++...+++.++           ....-..+.++.
T Consensus        61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek-----------~~a~~~l~~~i~  129 (164)
T PRK14471         61 LQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEK-----------NAAMAEIKNQVA  129 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            334445567778888888888888777744444444443333322222212221111           112233455666


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 026949           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIV  119 (230)
Q Consensus        90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~  119 (230)
                      +-++.-|..-|..-..+++.-..++...|.
T Consensus       130 ~la~~~a~kil~~~l~~~~~~~~lid~~i~  159 (164)
T PRK14471        130 NLSVEIAEKVLRKELSNKEKQHKLVEKMLG  159 (164)
T ss_pred             HHHHHHHHHHHHHHcCcHhHHHHHHHHHHH
Confidence            666666666665522221133444444443

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=96.32  E-value=0.26  Score=46.18  Aligned_cols=78  Identities=17%  Similarity=0.091  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (230)
Q Consensus        14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~   93 (230)
                      -+.++++|+.+|.+|+.+|+++++..+..++.++..++....+....+++.+++.           .+-..|.++.+-++
T Consensus        58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~-----------a~~elr~ei~~lAv  126 (445)
T PRK13428         58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQ-----------LTRQLRLELGHESV  126 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            4457788888888888888888886666666665555444443333333333222           22233445555555


Q ss_pred             HHHHHHHHh
Q 026949           94 EAASKEVLN  102 (230)
Q Consensus        94 ~~a~~~L~~  102 (230)
                      ..|.+-|.+
T Consensus       127 ~~A~kil~~  135 (445)
T PRK13428        127 RQAGELVRN  135 (445)
T ss_pred             HHHHHHHHH
Confidence            555555543

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=96.32  E-value=0.38  Score=37.79  Aligned_cols=43  Identities=19%  Similarity=0.143  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~   52 (230)
                      +..-....+.+|+.+|.+|+..|+.+++..+..++.+....+.
T Consensus        48 ~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~   90 (147)
T TIGR01144        48 AQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREERE   90 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566777888888888888888877555555555444443

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=96.26  E-value=0.48  Score=38.54  Aligned_cols=43  Identities=12%  Similarity=0.101  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~   55 (230)
                      --+..+.+|+.+|.+|+.+|+.+++..+..++.+++..+....
T Consensus        74 e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~  116 (173)
T PRK13453         74 ENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMI  116 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777777777777666666666555544333

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=96.22  E-value=0.19  Score=36.08  Aligned_cols=34  Identities=21%  Similarity=0.078  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 026949           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLV   44 (230)
Q Consensus        11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~   44 (230)
                      +.-...++.+|+.+|.+|+..|..+++.....++
T Consensus         8 e~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~   41 (85)
T TIGR02926         8 EEDAEELIEEAEEERKQRIAEAREEARELLEEAE   41 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666666666663333333

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=96.16  E-value=0.58  Score=38.38  Aligned_cols=93  Identities=19%  Similarity=0.188  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (230)
Q Consensus        16 ~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~   95 (230)
                      .-+++|+.+|.+|+..|+.+++.....++......+....+....+++..+           ...+-..|.++.+-.+..
T Consensus        86 ~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek-----------~~a~~~l~~~i~~lA~~~  154 (184)
T PRK13455         86 RKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAE-----------AAAVKAVRDRAVSVAVAA  154 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666544434433333322222221111111111           112223455566666666


Q ss_pred             HHHHHHhhccChhHHHHHHHHHHHH
Q 026949           96 ASKEVLNVSRDHNSYKKLLKGLIVQ  120 (230)
Q Consensus        96 a~~~L~~~~~~~~~Y~~~L~~Li~e  120 (230)
                      |..-|..-. ++.....++...|.+
T Consensus       155 a~kil~~~l-~~~~~~~lid~~i~~  178 (184)
T PRK13455        155 AADVIAKQM-TAADANALIDEAIKE  178 (184)
T ss_pred             HHHHHhhcC-CHHHHHHHHHHHHHH
Confidence            666554433 222444555555444

>PRK15354 type III secretion system protein SsaK; Provisional

Probab=96.14  E-value=0.67  Score=38.89  Aligned_cols=121  Identities=16%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v   92 (230)
                      -..-|++.|..+|.+|+..|..+-.    .+..+.....+.-...-..+.+        ....+..-.-|-.-+++...+
T Consensus        42 ~s~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~E--------~~~L~qHV~wLve~e~lE~sL  109 (224)
T PRK15354         42 VSHAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKME--------VEWLEQHVKHLQEDENQFRSL  109 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHH
Confidence            3457899999999999998887633    4544433322211111111111        111122222233333333333


Q ss_pred             HHHHHHHHHh--------hccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHH
Q 026949           93 MEAASKEVLN--------VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV  145 (230)
Q Consensus        93 ~~~a~~~L~~--------~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~  145 (230)
                      ...+.+++..        -.+.-+-=.-+...|-.+......++.++++|+|.+.+.+...
T Consensus       110 V~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~a  170 (224)
T PRK15354        110 VDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRET  170 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHH
Confidence            3333333332        1111112345566777777777777899999999998877653

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.08  E-value=0.43  Score=39.06  Aligned_cols=41  Identities=34%  Similarity=0.345  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK   50 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~k   50 (230)
                      .+.-++.|..+|+++++.|+.+|.+++......++......
T Consensus         6 A~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~   46 (198)
T PF01991_consen    6 AQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKE   46 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444443333333333333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=95.99  E-value=0.47  Score=38.10  Aligned_cols=41  Identities=10%  Similarity=0.147  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE   54 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~   54 (230)
                      +..-....+.+|+.+|.+|+.+|+++++    ++.++...+...+
T Consensus        57 l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~----~~~~ea~~eA~~e   97 (154)
T PRK06568         57 LFEQTNAQIKKLETLRSQMIEESNEVTK----KIIQEKTKEIEEF   97 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            4444556677788888888888877776    4444444444333

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=95.97  E-value=0.67  Score=37.46  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v   92 (230)
                      -.+..+.+|+.+|.+|+.+|..+++.....++..+...+..-.+....+++..           ....+-..|.++.+-+
T Consensus        66 ~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e-----------~~~a~~el~~e~~~lA  134 (167)
T PRK14475         66 DVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQA-----------EAQAAADVKAAAVDLA  134 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            34455566666666677666666664444443333222221111111111111           1112233455666666


Q ss_pred             HHHHHHHHHh-hccChhHHHHHHHHHHHH
Q 026949           93 MEAASKEVLN-VSRDHNSYKKLLKGLIVQ  120 (230)
Q Consensus        93 ~~~a~~~L~~-~~~~~~~Y~~~L~~Li~e  120 (230)
                      +..|..-|.. ++..  ....++...|.+
T Consensus       135 v~~A~kil~~~l~~~--~~~~lid~~i~~  161 (167)
T PRK14475        135 AQAAETVLAARLAGA--KSDPLVDAAIGQ  161 (167)
T ss_pred             HHHHHHHHHhHcCHH--HHHHHHHHHHHH
Confidence            6666666633 4332  345555555544

>PRK09098 type III secretion system protein HrpB; Validated

Probab=95.92  E-value=0.64  Score=39.82  Aligned_cols=51  Identities=20%  Similarity=0.111  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026949            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (230)
Q Consensus         5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~   55 (230)
                      ++-.+.....+.|+.+|+++|++|+.+|+++|+..+.+=..++..+...++
T Consensus        43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~   93 (233)
T PRK09098         43 AVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEW   93 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666677777888888888888888777544443333444333333

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=95.67  E-value=0.13  Score=42.21  Aligned_cols=31  Identities=23%  Similarity=0.479  Sum_probs=26.8

Q ss_pred             CCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (230)
Q Consensus       184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      .+.+||+++..  |..++|.|+.++|.++...+
T Consensus       147 ~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l  177 (178)
T COG0712         147 PSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL  177 (178)
T ss_pred             HHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence            38899999997  88899999999999876543

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=95.66  E-value=0.51  Score=33.80  Aligned_cols=47  Identities=28%  Similarity=0.300  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE   69 (230)
Q Consensus        19 ~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~   69 (230)
                      .+|+.++++++..|+.++.    .|+..++......+.....++.......
T Consensus         5 k~ae~~~~~~l~~A~~ea~----~Ii~~A~~~A~~~~~~a~~~A~~ea~~i   51 (85)
T TIGR02926         5 KKAEEDAEELIEEAEEERK----QRIAEAREEARELLEEAEEEASKLGEEI   51 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777666    6776666666666665555555544433

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=95.66  E-value=0.88  Score=36.66  Aligned_cols=44  Identities=30%  Similarity=0.249  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026949           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (230)
Q Consensus        11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~   58 (230)
                      ..-...-+.+|+.+|.+|+..|..+++.    +.++...+.+.+.++.
T Consensus        60 ~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~----~~~e~~~~a~~e~~r~  103 (161)
T COG0711          60 LAEYEQELEEAREQASEIIEQAKKEAEQ----IAEEIKAEAEEELERI  103 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            3445566777888888888888888773    4333344444444433

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=95.59  E-value=0.27  Score=40.14  Aligned_cols=32  Identities=28%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             CCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (230)
Q Consensus       184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      ++++|||++..  |.-++|.|+.++|..+...++
T Consensus       146 ~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~  177 (180)
T PRK13441        146 ESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL  177 (180)
T ss_pred             hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence            37899999997  778899999999998887764

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=95.53  E-value=0.73  Score=34.69  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026949           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (230)
Q Consensus        14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~   57 (230)
                      ......+|++.++.|+..|++++.    .|+.+...++...++.
T Consensus        19 ad~~IeeAkEe~~~~i~eAr~ear----eiieeaE~eA~~~~~e   58 (108)
T COG2811          19 ADEEIEEAKEEAEQIIKEAREEAR----EIIEEAEEEAEKLAQE   58 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            344455566666666666666555    5555555444444443

>PRK15322 invasion protein OrgB; Provisional

Probab=95.44  E-value=1.3  Score=37.02  Aligned_cols=159  Identities=11%  Similarity=0.065  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v   92 (230)
                      -...|.++|+.+|.+|+.+|+.+++    .|...+.   ...|...+.++...-..        -+...-....++..+|
T Consensus        13 ~a~~l~~qA~~kA~~ii~qA~~eaE----~ir~~A~---~~GYq~Gl~qa~~~la~--------~~a~~~~l~~~l~~~i   77 (210)
T PRK15322         13 SAERLEQQARRRAKRILRQAEEEAE----TLRMYAY---QEGYEQGMIDALQQVAA--------YLTDNQTMAWKWMEKI   77 (210)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence            4567899999999999999999988    6655443   35566655543322211        0111111233566666


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC--CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEecccc
Q 026949           93 MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI  170 (230)
Q Consensus        93 ~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~--~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~  170 (230)
                      -+.++.-|...-.+|    ++|-.++.+=+..+..  ..+.|++-++-......+-.    .|.+..   ++++.+.-  
T Consensus        78 e~~~r~lls~~Ld~p----d~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~----~l~e~w---~~~~~i~y--  144 (210)
T PRK15322         78 QIYARELFSAAVDHP----ETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMV----LLMENW---PGTFNLKY--  144 (210)
T ss_pred             HHHHHHHHHHHccCH----HHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHH----HHHHhc---CCCeEEEE--
Confidence            666666665555554    4555555553333322  35667765533333333322    333322   34444432  


Q ss_pred             CCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHh
Q 026949          171 YLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK  215 (230)
Q Consensus       171 ~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~  215 (230)
                                    .-.-+||+++  |.-.+.-+=..-++.+...
T Consensus       145 --------------hd~~rFV~~~--g~qIaEFsPq~~v~~a~~~  173 (210)
T PRK15322        145 --------------HQEQRFIMSC--GDQIAEFSPEQFVETAVGV  173 (210)
T ss_pred             --------------cCCCceEEEe--CCchhccCHHHHHHHHHHH
Confidence                          1246788887  5555666655555555443

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=95.41  E-value=1  Score=36.01  Aligned_cols=97  Identities=25%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM   92 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v   92 (230)
                      -...-+..|+.+|.+|+..|+.+++    .++++...++....++....++..       ........+-..|.++.+-.
T Consensus        58 ~~e~~L~~A~~ea~~ii~~A~~~a~----~~~~~a~~~a~~~~~~~~~~a~~~-------I~~ek~~a~~el~~~~~~lA  126 (159)
T PRK09173         58 EYQRKRKEAEKEAADIVAAAEREAE----ALTAEAKRKTEEYVARRNKLAEQK-------IAQAETDAINAVRSSAVDLA  126 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777777777777766    444444444444333322221111       11111112334456666667


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 026949           93 MEAASKEVLNVSRDHNSYKKLLKGLIVQS  121 (230)
Q Consensus        93 ~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea  121 (230)
                      +..|..-|..-. +++....++...|.+.
T Consensus       127 ~~~A~kil~~~l-~~~~~~~li~~~i~~~  154 (159)
T PRK09173        127 IAAAEKLLAEKV-DAKAASELFKDALAQV  154 (159)
T ss_pred             HHHHHHHHHhhc-CHHHHHHHHHHHHHHH
Confidence            777776665533 3224566666666553

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=95.40  E-value=1.1  Score=35.82  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           73 QLNASRIKVLQAQDDLVSNMMEAAS   97 (230)
Q Consensus        73 ~~~~~R~~~l~ar~~~i~~v~~~a~   97 (230)
                      ....++..+...|+..+.++...+.
T Consensus        99 ~~~~a~~~I~~ek~~a~~el~~~~~  123 (159)
T PRK09173         99 RNKLAEQKIAQAETDAINAVRSSAV  123 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444454555555555555444433

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=95.33  E-value=0.79  Score=38.45  Aligned_cols=35  Identities=20%  Similarity=0.063  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026949           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA   46 (230)
Q Consensus        12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~   46 (230)
                      .--+..+.+|+.+|.+|+..|+.+++.....++.+
T Consensus       108 ~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~  142 (204)
T PRK09174        108 AAYEQELAQARAKAHSIAQAAREAAKAKAEAERAA  142 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666666666666444444333

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=95.28  E-value=0.63  Score=34.57  Aligned_cols=29  Identities=34%  Similarity=0.390  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026949           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (230)
Q Consensus        20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~   52 (230)
                      +|+..|.+|+.+|+.+..    .++.+++.++.
T Consensus        11 ~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~   39 (105)
T PF03179_consen   11 EAEKEAQEIVEEARKERE----QRLKQAKEEAE   39 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            455555555555555433    44444444433

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=95.12  E-value=1.5  Score=36.71  Aligned_cols=24  Identities=13%  Similarity=0.167  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIR   65 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~   65 (230)
                      .|+..++......++....++..+
T Consensus       118 ~Ii~~A~~eAe~~~e~i~~~A~~e  141 (205)
T PRK06231        118 EIIDQANYEALQLKSELEKEANRQ  141 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666555555555444444433

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=95.12  E-value=0.7  Score=37.44  Aligned_cols=41  Identities=27%  Similarity=0.173  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK   67 (230)
Q Consensus        23 ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~   67 (230)
                      .++++++.+|+.++.    .|+++++......++....++.....
T Consensus        77 ~e~e~~L~~Ar~eA~----~Ii~~A~~eAe~~~~~ii~~A~~ea~  117 (167)
T PRK08475         77 EDALKKLEEAKEKAE----LIVETAKKEAYILTQKIEKQTKDDIE  117 (167)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555544    66666666665555555554444433

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=95.07  E-value=1.1  Score=35.71  Aligned_cols=46  Identities=11%  Similarity=-0.010  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY   55 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~   55 (230)
                      +..-....+++|+.+|.+|+..|+.+++..+..++.+++..+....
T Consensus        75 ~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~  120 (156)
T CHL00118         75 LTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLL  120 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566777777778888888877777655555555544444333

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=94.99  E-value=0.7  Score=35.96  Aligned_cols=41  Identities=12%  Similarity=0.083  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026949           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (230)
Q Consensus        12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~   52 (230)
                      .-.+..+++|+.+|.+|+..|..+++..+..++..+...+.
T Consensus        60 ~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~  100 (140)
T PRK07353         60 AQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQ  100 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777777777777777776666666555544443

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=94.89  E-value=1.6  Score=35.00  Aligned_cols=49  Identities=12%  Similarity=0.170  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~   94 (230)
                      .|+++++......++....++..+..+.    ...++..+-..++.++.++..
T Consensus        78 ~ii~~A~~~a~~~~~~~l~~A~~ea~~~----~~~a~~~I~~ek~~a~~~L~~  126 (164)
T PRK14473         78 KIVAQAQERARAQEAEIIAQARREAEKI----KEEARAQAEQERQRMLSELKS  126 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666655555555444433322    223333444444444444433

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=94.84  E-value=1.2  Score=33.26  Aligned_cols=71  Identities=15%  Similarity=0.138  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS   97 (230)
Q Consensus        19 ~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a~   97 (230)
                      .+|+.++++++..|+.++.    .|+..++......++..+.++.....+.+.    .+|..+-..++.++.++-.++.
T Consensus         9 k~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile----~Ak~eie~Ek~~a~~elk~eia   79 (103)
T PRK08404          9 VKAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEEEAQKLIE----KKKKEGEEEAKKILEEGEKEIE   79 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            4788899999999999877    888888888888888777776665544433    3344444445555555444443

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=94.79  E-value=0.43  Score=38.64  Aligned_cols=29  Identities=24%  Similarity=0.465  Sum_probs=25.2

Q ss_pred             CcccceEEEecCCcEEEeccHHHHHHHHHHh
Q 026949          185 SCSGGVVVASRDGKIVCENTLDARLDVVFRK  215 (230)
Q Consensus       185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~  215 (230)
                      +.+||+++..  |...+|.|+.++|+.+...
T Consensus       143 ~ligGi~i~~--~~~~iD~Si~~~L~~l~~~  171 (172)
T TIGR01145       143 DLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ  171 (172)
T ss_pred             HHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence            7899999997  7788999999999877654

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=94.68  E-value=2  Score=35.18  Aligned_cols=24  Identities=17%  Similarity=0.100  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIR   65 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~   65 (230)
                      .++.+++.......+....++..+
T Consensus        94 ~ii~~A~~~ae~~~~~il~~A~~e  117 (184)
T CHL00019         94 EIRVNGYSEIEREKENLINQAKED  117 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555544444444433

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=94.65  E-value=0.43  Score=38.75  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=26.3

Q ss_pred             CcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949          185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (230)
Q Consensus       185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      +.+||+++..  |...+|+|+.++|+.+...+
T Consensus       146 ~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l  175 (177)
T PRK05758        146 SLIGGVIIKV--GDRVIDGSVRGKLERLKDAL  175 (177)
T ss_pred             HHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence            7899999997  67889999999999887665

>PRK00106 hypothetical protein; Provisional

Probab=94.61  E-value=3.1  Score=40.02  Aligned_cols=34  Identities=26%  Similarity=0.227  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA   46 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~   46 (230)
                      -...|..+|+.+|++|+.+|..+++..+..+..+
T Consensus        43 ~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lE   76 (535)
T PRK00106         43 EAVNLRGKAERDAEHIKKTAKRESKALKKELLLE   76 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777777777777665444333333

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=94.56  E-value=2.1  Score=35.69  Aligned_cols=116  Identities=16%  Similarity=0.246  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE   99 (230)
Q Consensus        20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a~~~   99 (230)
                      .++...+.|...|+++++    .|..++..+.....++....    .+..+.......+...-..++.++..+..+++..
T Consensus         3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae~i~~ea~~~----~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~   74 (194)
T COG1390           3 ELEKLIKKILREAEEEAE----EILEEAREEAEKIKEEAKRE----AEEAIEEILRKAEKEAERERQRIISSALLEARRK   74 (194)
T ss_pred             cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888776    77666554443333322222    2222222333344455566777777766666655


Q ss_pred             HHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHH
Q 026949          100 VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA  154 (230)
Q Consensus       100 L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~  154 (230)
                      +..      .++++|...+...-..|..    +.- +.+...+..++..+...|.
T Consensus        75 ~Le------~~ee~l~~~~~~~~e~L~~----i~~-~~~~~~l~~ll~~~~~~~~  118 (194)
T COG1390          75 LLE------AKEEILESVFEAVEEKLRN----IAS-DPEYESLQELLIEALEKLL  118 (194)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHc----CcC-CcchHHHHHHHHHHHHhcC
Confidence            544      3566666655555555432    221 2244446666666555554

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=94.42  E-value=2.2  Score=34.44  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a   96 (230)
                      .|+..++......++....+++....+.    ...++..+-..++..+.++...+
T Consensus        80 ~Ii~~A~~~a~~~~~~~~~~A~~ea~~~----~~~A~~~I~~e~~~a~~el~~e~  130 (167)
T PRK14475         80 AMLAAAKADARRMEAEAKEKLEEQIKRR----AEMAERKIAQAEAQAAADVKAAA  130 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666655555555544444443333322    22334344444444444443333

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=94.42  E-value=3  Score=36.05  Aligned_cols=52  Identities=13%  Similarity=0.159  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ   61 (230)
Q Consensus         6 ~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~   61 (230)
                      ..++...+++....+|+...++|+.+|+++++    ++.......+..+..+...+
T Consensus        69 a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~----~~~~~a~~~ie~Ek~~a~~~  120 (250)
T PRK14474         69 LEQQRASFMAQAQEAADEQRQHLLNEAREDVA----TARDEWLEQLEREKQEFFKA  120 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555566666666666666666665    78877777777666555444

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=94.39  E-value=1  Score=37.02  Aligned_cols=40  Identities=13%  Similarity=0.094  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK   49 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~   49 (230)
                      +..-.+.++.+|+.++.+|+..|.++++..+..++.+...
T Consensus        84 ~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~  123 (181)
T PRK13454         84 AEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADA  123 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667777777777777777766555555444433

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=94.39  E-value=1.1  Score=35.30  Aligned_cols=44  Identities=30%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE   56 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~   56 (230)
                      -.+.++.+|+.+|..+...|..+|..+..++++++...+.....
T Consensus        63 e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~  106 (141)
T PRK08476         63 EIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYE  106 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555444444333

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=94.14  E-value=2.6  Score=34.19  Aligned_cols=23  Identities=9%  Similarity=0.047  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEI   64 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~   64 (230)
                      .|+.+++.......+....++..
T Consensus        86 ~ii~~A~~ea~~~~~~~~~~A~~  108 (173)
T PRK13460         86 AIVAEAKSDALKLKNKLLEETNN  108 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56555555555554444444433

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=94.14  E-value=3.7  Score=35.93  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=23.2

Q ss_pred             ccceEEEec----CCcEEEec---cHHHHHHHHHHhcHHHHHHH
Q 026949          187 SGGVVVASR----DGKIVCEN---TLDARLDVVFRKKLPEIRKQ  223 (230)
Q Consensus       187 ~GGvvl~s~----dg~i~vdn---Tle~rl~~~~~~~~~~I~~~  223 (230)
                      .+|+-|...    .|+.+|..   .+|.+++.-++.+...+...
T Consensus       234 ~~~i~I~~D~~l~~GgcvIet~~G~IDasi~tqLe~l~~~L~e~  277 (281)
T PRK06669        234 EEHLKIYEDDAISKGGCVIETDFGNIDARIDTQLKQLKEKLLEN  277 (281)
T ss_pred             CCCeEEEECCCCCCCCeEEEcCCCeeeccHHHHHHHHHHHHHhh
Confidence            466776654    37777754   56777776666666555443

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=94.10  E-value=2.4  Score=33.76  Aligned_cols=51  Identities=16%  Similarity=0.238  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a   96 (230)
                      .|+++++.......+....++..+..+.++    .++..+-..+..++.++..++
T Consensus        75 ~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~----~a~~~i~~e~~~a~~~l~~ei  125 (159)
T PRK13461         75 KIVEEYKSKAENVYEEIVKEAHEEADLIIE----RAKLEAQREKEKAEYEIKNQA  125 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            666666666555555555554444333332    333344444444444443333

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=94.07  E-value=2.7  Score=34.11  Aligned_cols=23  Identities=17%  Similarity=0.073  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEI   64 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~   64 (230)
                      .++.+++.......+....+++.
T Consensus        89 ~ii~~a~~~a~~~~~~~~~~A~~  111 (174)
T PRK07352         89 RIRADAKARAEAIRAEIEKQAIE  111 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666655555554444444333

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=93.98  E-value=2.8  Score=34.02  Aligned_cols=23  Identities=4%  Similarity=0.098  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEI   64 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~   64 (230)
                      .|+.+++.......+....++..
T Consensus        88 ~ii~~A~~~a~~~~~~~~~~A~~  110 (175)
T PRK14472         88 KIIREGKEYAEKLRAEITEKAHT  110 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555554444444444333

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=93.93  E-value=2.9  Score=33.97  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           41 LQLVEAEKKKIRQEYERKEKQVEIRK   66 (230)
Q Consensus        41 ~~i~~~~~~ki~~~~~~~~~~~~~~k   66 (230)
                      ..|+++++.......+....++..+.
T Consensus        87 ~~ii~~a~~~a~~~~~~~~~~A~~ea  112 (173)
T PRK13453         87 QKILEDAKVQARQQQEQIIHEANVRA  112 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36777776666666655555544433

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.70  E-value=0.83  Score=34.85  Aligned_cols=39  Identities=31%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026949           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI   51 (230)
Q Consensus        13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki   51 (230)
                      -....+.+|+.++.+|+..|..+++..+..++.+....+
T Consensus        55 e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~   93 (132)
T PF00430_consen   55 EYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEA   93 (132)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666666666666666666644444444444333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=93.55  E-value=1  Score=36.92  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=26.4

Q ss_pred             CcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949          185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  217 (230)
Q Consensus       185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~  217 (230)
                      +.+||+++..  |...+|+|+.++|+.+...+.
T Consensus       150 ~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~  180 (184)
T CHL00119        150 SLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD  180 (184)
T ss_pred             HHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            7899999997  778899999999987766553

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=93.53  E-value=0.87  Score=37.11  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=23.5

Q ss_pred             ccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHH
Q 026949          187 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRK  222 (230)
Q Consensus       187 ~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~  222 (230)
                      +|||++..  |..++|.|  ..|+.+...+..-|.+
T Consensus       143 IGG~ii~i--gd~v~D~s--~~l~~~~~~~~~~~~~  174 (176)
T PRK08474        143 YDGIKVEV--DDLGVEVS--FSKDRLKNQLIEYILK  174 (176)
T ss_pred             CCCEEEEE--CCEEEEee--eeHHHHHHHHHHHHHh
Confidence            89999997  88889995  4566666666554443

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=93.47  E-value=2.3  Score=31.46  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026949            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER   57 (230)
Q Consensus         9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~   57 (230)
                      +.++....|..+|+.....++.+|+.+|+    ..+...+.....+|..
T Consensus        11 ~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~----~ei~~~r~~~e~~~~~   55 (105)
T PF03179_consen   11 EAEKEAQEIVEEARKEREQRLKQAKEEAE----KEIEEFRAEAEEEFKE   55 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            35677889999999999999999999998    4444444444555543

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=93.40  E-value=4.6  Score=34.66  Aligned_cols=52  Identities=17%  Similarity=0.262  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ   61 (230)
Q Consensus         6 ~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~   61 (230)
                      ..++...|++.-..+|+...++|+.+|+.+++    ++...+...++.+..+...+
T Consensus        69 a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~----~~~~~a~~~ie~E~~~a~~~  120 (246)
T TIGR03321        69 LDQQREVLLTKAKEEAQAERQRLLDEAREEAD----EIREKWQEALRREQAALSDE  120 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666677777777766    77777777777665554433

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=92.87  E-value=2.4  Score=34.40  Aligned_cols=30  Identities=30%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             CcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949          185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (230)
Q Consensus       185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      +.+||+++..  |...+|+|+.++|+.+...+
T Consensus       148 sligG~~i~~--~~~~iD~Si~~~L~~l~~~l  177 (181)
T PRK13429        148 SLIGGVVVKI--GDKVLDASVRTQLRRLKETL  177 (181)
T ss_pred             hhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            7899999997  66889999999999887665

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=92.62  E-value=5.2  Score=33.15  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026949           21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE   54 (230)
Q Consensus        21 A~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~   54 (230)
                      +...|.+|+..|+.+|+    +|+..+..+.+.-
T Consensus        28 ~~~~a~~IL~~A~~qA~----~Il~~Ae~eAe~l   57 (191)
T PF06188_consen   28 AQQQAREILEDARQQAE----QILQQAEEEAEAL   57 (191)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            56778888888888887    7887776655433

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=92.39  E-value=9.3  Score=36.57  Aligned_cols=31  Identities=26%  Similarity=0.117  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 026949           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLV   44 (230)
Q Consensus        14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~   44 (230)
                      ...+..+|+.+|+.|+.+|..+++.......
T Consensus        23 a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~   53 (514)
T TIGR03319        23 AEKKLGSAEELAKRIIEEAKKEAETLKKEAL   53 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666654443333

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=92.38  E-value=1.8  Score=34.78  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           27 EISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV  100 (230)
Q Consensus        27 eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a~~~L  100 (230)
                      +.+.+|+.++.    .|+.+++.......+....+++....+    ....++..+-..|+..+.++-.++-+--
T Consensus        63 ~~L~~Ar~EA~----~Ii~~A~~~a~~~~~ea~~eA~~ea~r----~~~~A~~~Ie~Ek~~Al~elr~eva~La  128 (154)
T PRK06568         63 AQIKKLETLRS----QMIEESNEVTKKIIQEKTKEIEEFLEH----KKSDAIQLIQNQKSTASKELQDEFCDEV  128 (154)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555444    777777766655555554444433322    2333444555556665555555554433

>PRK12704 phosphodiesterase; Provisional

Probab=92.35  E-value=9.6  Score=36.55  Aligned_cols=24  Identities=33%  Similarity=0.272  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH
Q 026949           15 RFIRQEAEEKANEISVSAEEEFNI   38 (230)
Q Consensus        15 ~~I~~eA~ekA~eI~~~A~~ea~~   38 (230)
                      ..+..+|+.+|++|+.+|..+++.
T Consensus        30 ~~~l~~Ae~eAe~I~keA~~eAke   53 (520)
T PRK12704         30 EAKIKEAEEEAKRILEEAKKEAEA   53 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666666555543

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=92.15  E-value=7.2  Score=33.67  Aligned_cols=50  Identities=6%  Similarity=-0.007  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHh-----hccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecc
Q 026949           86 DDLVSNMMEAASKEVLN-----VSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRK  136 (230)
Q Consensus        86 ~~~i~~v~~~a~~~L~~-----~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~  136 (230)
                      .+.+..++..+...+..     +.-+| .+.+++..........++. ..+.|+..|
T Consensus       158 ~e~i~~lv~~al~~l~~~~~i~I~v~p-~d~~~v~~~~~~l~~~~~~~~~i~i~~D~  213 (255)
T TIGR03825       158 KNAFQALVRQVLSEVREFDEVSIYVHP-HWYERVAAQKDELQSILPACEHLAVYPDE  213 (255)
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEECH-HHHHHHHHhHHHHHhhcCCCCceEEEeCC
Confidence            44666777777776654     22257 5555555555544444443 345555444

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK12704 phosphodiesterase; Provisional

Probab=92.12  E-value=12  Score=36.00  Aligned_cols=25  Identities=16%  Similarity=0.377  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026949           80 KVLQAQDDLVSNMMEAASKEVLNVS  104 (230)
Q Consensus        80 ~~l~ar~~~i~~v~~~a~~~L~~~~  104 (230)
                      +-|..+..-++++..+....|.+.+
T Consensus       124 ~eLe~~~~~~~~~~~~~~~~l~~~a  148 (520)
T PRK12704        124 QELEKKEEELEELIEEQLQELERIS  148 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555555555655665665543

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=91.90  E-value=6  Score=32.31  Aligned_cols=50  Identities=18%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~   95 (230)
                      .|+++++.......+....++...    .+.....++..+-..++..+.++...
T Consensus        97 ~Ii~~A~~~a~~~~e~~~~~a~~e----a~~~~~~A~~~I~~ek~~a~~~l~~~  146 (184)
T PRK13455         97 RIVAAAKDEAQAAAEQAKADLEAS----IARRLAAAEDQIASAEAAAVKAVRDR  146 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555544444444333333322    12233344444555555554444333

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=91.80  E-value=5.3  Score=31.48  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIR   65 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~   65 (230)
                      .|++++.......++....+++..
T Consensus        74 ~i~~~a~~ea~~~~~~~~~~a~~e   97 (156)
T PRK05759         74 EIIEQAKKRAAQIIEEAKAEAEAE   97 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666655555555554444433

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=91.38  E-value=5.7  Score=31.00  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           24 KANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY   70 (230)
Q Consensus        24 kA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~   70 (230)
                      +++..+.+|+.++.    .|+++++.......+....++.....+.+
T Consensus        51 e~~~~l~~A~~ea~----~i~~~a~~~a~~~~~~~~~~a~~e~~~~~   93 (147)
T TIGR01144        51 KAQVILKEAKDEAQ----EIIENANKRGSEILEEAKAEAREEREKIK   93 (147)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555544    77777777777666666555554443333

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=90.72  E-value=7.4  Score=31.11  Aligned_cols=51  Identities=0%  Similarity=0.161  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a   96 (230)
                      .++..++......++....+++....+    .+..++..+-..++.++..+-..+
T Consensus        78 ~ii~~A~~~a~~~~~~~~~~A~~ea~~----~~~~a~~~i~~ek~~a~~~l~~~i  128 (164)
T PRK14471         78 AILKEAREIKEKMIADAKEEAQVEGDK----MIEQAKASIESEKNAAMAEIKNQV  128 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566665555555444444443333322    223333344444444444443333

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=90.62  E-value=7  Score=30.66  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026949           21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (230)
Q Consensus        21 A~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~   58 (230)
                      +..+.++++..|+.++.    .++++...+...+.++.
T Consensus        60 ~~~e~e~~l~~Ar~eA~----~~~~~a~~~A~~ea~~~   93 (141)
T PRK08476         60 IEHEIETILKNAREEAN----KIRQKAIAKAKEEAEKK   93 (141)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            34445555555555555    34444444444444433

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=89.86  E-value=7.7  Score=29.99  Aligned_cols=63  Identities=6%  Similarity=0.097  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (230)
Q Consensus        25 A~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~   95 (230)
                      +++.+..|+.++.    .|+++++.......+....++..+..+.    ...++..+...++....++...
T Consensus        62 ~e~~L~~a~~ea~----~i~~~a~~~a~~~~~~~~~~a~~ea~~~----~~~a~~~i~~e~~~a~~~l~~~  124 (140)
T PRK07353         62 YEQQLASARKQAQ----AVIAEAEAEADKLAAEALAEAQAEAQAS----KEKARREIEQQKQAALAQLEQQ  124 (140)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444443    6777777666666665555544443332    2333334444444444443333

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=89.57  E-value=5.5  Score=30.20  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK   66 (230)
Q Consensus        23 ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k   66 (230)
                      .++++.+..|+.++.    .++..++......++....+++..-
T Consensus        54 ~e~~~~l~~a~~ea~----~i~~~a~~~a~~~~~~~~~ea~~~~   93 (132)
T PF00430_consen   54 AEYEEKLAEAREEAQ----EIIEEAKEEAEKEKEEILAEAEKEA   93 (132)
T ss_dssp             HHHHHHHHHHHHHHC----HHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566666655    7777777777766666655554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=89.47  E-value=12  Score=31.45  Aligned_cols=20  Identities=10%  Similarity=0.258  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQ   61 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~   61 (230)
                      .|+...+.......+....+
T Consensus       123 ~Ii~~Ar~ea~~~~e~~~~~  142 (204)
T PRK09174        123 SIAQAAREAAKAKAEAERAA  142 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555544444444433333

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=88.18  E-value=12  Score=29.83  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI   64 (230)
Q Consensus        25 A~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~   64 (230)
                      +++.+.+|+.++.    .+++.++.......+....+++.
T Consensus        79 ~e~~L~~A~~ea~----~ii~~A~~~a~~~~~~~~~~A~~  114 (156)
T CHL00118         79 YEQELSKARKEAQ----LEITQSQKEAKEIVENELKQAQK  114 (156)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444443    56666666555555544444433

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=88.03  E-value=14  Score=30.69  Aligned_cols=29  Identities=31%  Similarity=0.241  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026949           15 RFIRQEAEEKANEISVSAEEEFNIEKLQL   43 (230)
Q Consensus        15 ~~I~~eA~ekA~eI~~~A~~ea~~ek~~i   43 (230)
                      ..-+..|+.+|..|+..|+.+++..+...
T Consensus        26 ~~~~~~A~~~A~~i~~~A~~eAe~~~ke~   54 (201)
T PF12072_consen   26 RKKLEQAEKEAEQILEEAEREAEAIKKEA   54 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666666666666666666433333

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.47  E-value=0.052  Score=43.86  Aligned_cols=32  Identities=25%  Similarity=0.522  Sum_probs=11.9

Q ss_pred             CCCCcccceEEEecCCcEEEeccHHHHHHHHHHh
Q 026949          182 HGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK  215 (230)
Q Consensus       182 ~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~  215 (230)
                      .+++++|||++..  |..++|.|+.++|+.+...
T Consensus       140 vD~sLigG~~i~~--~~~~iD~Sv~~~L~~l~~~  171 (172)
T PF00213_consen  140 VDPSLIGGFIIEV--GDKVIDASVKSRLEQLKKE  171 (172)
T ss_dssp             -------------------TTTTTTTTTTTT-TT
T ss_pred             EccccCcEEEEEE--CCEEEehhHHHHHHHHHhc
Confidence            3458999999997  7888999999999876654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=86.41  E-value=32  Score=33.00  Aligned_cols=26  Identities=23%  Similarity=0.265  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949           12 QMVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus        12 ~~~~~I~~eA~ekA~eI~~~A~~ea~   37 (230)
                      +-...|..+|..+|++...++..+++
T Consensus        32 ~eAe~i~keA~~eAke~~ke~~~Eae   57 (514)
T TIGR03319        32 ELAKRIIEEAKKEAETLKKEALLEAK   57 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555544444444443

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=85.44  E-value=17  Score=29.14  Aligned_cols=17  Identities=12%  Similarity=0.188  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHhc
Q 026949          109 SYKKLLKGLIVQSLLRL  125 (230)
Q Consensus       109 ~Y~~~L~~Li~ea~~~l  125 (230)
                      .|.+-|..|...-...+
T Consensus       125 ~~~~~~i~~~~~i~~k~  141 (155)
T PRK06569        125 NKSEAIIKLAVNIIEKI  141 (155)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            46666666666655444

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=84.88  E-value=18  Score=28.93  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           42 QLVEAEKKKIRQEYERKEKQVEIRK   66 (230)
Q Consensus        42 ~i~~~~~~ki~~~~~~~~~~~~~~k   66 (230)
                      .|++.++.......+....+++...
T Consensus        76 ~Ii~~A~~~a~~~~~e~~~~a~~e~  100 (161)
T COG0711          76 EIIEQAKKEAEQIAEEIKAEAEEEL  100 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777666666655555544444433

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=82.89  E-value=24  Score=28.78  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV   62 (230)
Q Consensus        25 A~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~   62 (230)
                      .++++.+|+.|+.    .++.+.+.......+....++
T Consensus        88 ye~~L~~Ar~EA~----~ii~~A~~ea~~~~~~~~~~A  121 (181)
T PRK13454         88 YNKALADARAEAQ----RIVAETRAEIQAELDVAIAKA  121 (181)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444    566666555555554444443

>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]

Probab=81.18  E-value=3.6  Score=34.33  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=25.0

Q ss_pred             CCcccceEEEecCCcEEEeccHHHHHHHHHH
Q 026949          184 PSCSGGVVVASRDGKIVCENTLDARLDVVFR  214 (230)
Q Consensus       184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~  214 (230)
                      ++++||++|+.  |.-.||-|+.+|+..+-.
T Consensus       176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~  204 (210)
T KOG1662|consen  176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK  204 (210)
T ss_pred             hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence            48999999987  777899999999986654

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=80.50  E-value=23  Score=26.92  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026949           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE   56 (230)
Q Consensus        20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~   56 (230)
                      .|+.+|.+|+.+|+..    +.+-+.+++..+..+++
T Consensus        13 ~AE~eA~~IV~~AR~~----r~~RLKqAK~EA~~EI~   45 (113)
T TIGR01147        13 QAEKRAAEKVSEARKR----KTKRLKQAKEEAQKEVE   45 (113)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            3888999999888864    33444555555554443

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		6e-27
2kz9_A	69	Structure Of E1-69 Of Yeast V-Atpase Length = 69		3e-04

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 9/219 (4%)
Query: 6   VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65
           V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + 
Sbjct: 13  VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72
Query: 66  KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL 125
           ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L
Sbjct: 73  QQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKL 132
Query: 126 KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXS 185
            EP  +++  + D  L+ES+ +    EY +K Q  P E IV  + YL             
Sbjct: 133 LEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDL--------- 183
Query: 186 CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
            SGGVVV++   KI   NTL+ RL ++  + LP IR +L
Sbjct: 184 VSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLEL 222

>pdb|2KZ9|A Chain A, Structure Of E1-69 Of Yeast V-Atpase Length = 69

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 6  VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
          V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+ 
Sbjct: 13 VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKA 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	6e-46
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	3e-36
2kz9_A	69	V-type proton ATPase subunit E; V-ATPase, proton t	3e-24
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	8e-14
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-05

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198

 Score =  150 bits (380), Expect = 6e-46
 Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 22/216 (10%)

Query: 9   QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI 68
             + +++ I +EAE K   I   A ++    K +     + K      R + Q E+ K+ 
Sbjct: 3   GAELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQR 62

Query: 69  EYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP 128
             +      R K L  Q++++S+++E   + +  +S D   Y + +K L+ +++  L E 
Sbjct: 63  IIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEK 120

Query: 129 AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSG 188
            V +   +    L+ S +E  K E           +                       G
Sbjct: 121 KVRVMSNEKTLGLIASRIEEIKSELGDVSIELGETV--------------------DTMG 160

Query: 189 GVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
           GV+V + DG+I  +NT +AR++    +    I K L
Sbjct: 161 GVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVL 196

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Length = 187

 Score =  125 bits (315), Expect = 3e-36
 Identities = 37/222 (16%), Positives = 88/222 (39%), Gaps = 40/222 (18%)

Query: 3   DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
           +A +S++++  ++ + QEAE KA  +   AEE+       L++A ++ +  +Y    ++ 
Sbjct: 4   EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAK----ALLQARERALEAQYRAALRRA 59

Query: 63  EIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL 122
           E   ++              QA+ +++  +     + +  + +    + ++++ L +++L
Sbjct: 60  ESAGELL-------VATARTQARGEVLEEVRRRVREALEALPQKPE-WPEVVRKLALEAL 111

Query: 123 LRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAH 182
             L     L+    +D   +E++      E   +                          
Sbjct: 112 EALPGAKALV-ANPEDLPHLEALARERGVELQAE-------------------------- 144

Query: 183 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
            P+   GV     +GK   EN+L ARLD  +     ++ + L
Sbjct: 145 -PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQAL 185

>2kz9_A V-type proton ATPase subunit E; V-ATPase, proton transport; NMR {Saccharomyces cerevisiae} Length = 69

 Score = 90.7 bits (225), Expect = 3e-24
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 1  MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
          +    V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K
Sbjct: 8  LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLK 67

Query: 61 Q 61
          +
Sbjct: 68 K 68

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Length = 106

 Score = 64.3 bits (156), Expect = 8e-14
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 16/120 (13%)

Query: 106 DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVE-SVLESAKEEYAQKLQVHPPEI 164
           +   YK  L  LI    + L    +++R  K D  L++ S L + ++E     +      
Sbjct: 1   EQPEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV---- 56

Query: 165 IVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224
                   P             +GG ++ + DG    +N+L+A  +         I ++L
Sbjct: 57  -TVLKKGEPV----------DIAGGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKL 105

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.1 bits (98), Expect = 4e-05
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK 67
            ++ Q    IR+  EE+   +         + + +  E  KK + +  +R+ +QVE  K 
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	100.0
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.97
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	99.9
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	97.56
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	97.4
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	97.23
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	95.55
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	94.77
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	94.24
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	91.23
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	87.52
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	84.3
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	82.92

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=2e-51  Score=349.55  Aligned_cols=221  Identities=34%  Similarity=0.542  Sum_probs=206.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (230)
Q Consensus         1 ~~~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~   80 (230)
                      |||++|+++|++|++||++||+++|++|..+|++||++++.+++++++.++...|++++++++..+++..|+..+++|++
T Consensus         8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~   87 (233)
T 4efa_E            8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK   87 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCC
Q 026949           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (230)
Q Consensus        81 ~l~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~  160 (230)
                      +|.+|+++|+++|+.|+++|.+++.++..|+.+|.+||.+|+..+++++++|+|+|.|.++++.+++++...|+..+|+.
T Consensus        88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~  167 (233)
T 4efa_E           88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA  167 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999988778999999999999999999999999999999999999999999999888875


Q ss_pred             CCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCCCCC
Q 026949          161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA  230 (230)
Q Consensus       161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~~~~  230 (230)
                      .....++...+|++         .+|.|||+|+|.||+|.|||||++||+.++++++|+|++.|||+||+
T Consensus       168 ~~~~~~~~~~~l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~  228 (233)
T 4efa_E          168 PLEEIVISNDYLNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT  228 (233)
T ss_dssp             CCCEEEECSSCCCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred             CccccccccccCCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence            44444444566654         37999999999999999999999999999999999999999999984

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=100.00  E-value=1.2e-34  Score=238.53  Aligned_cols=182  Identities=17%  Similarity=0.234  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK----QVEIRKKIEYSMQLNASRIKVLQAQDD   87 (230)
Q Consensus        12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~----~~~~~k~~~~S~~~~~~R~~~l~ar~~   87 (230)
                      ++...|.++|+++|++|+.+|+++++    .|+++++.++....+...+    ++...+++.+|+.....|+++|.+|++
T Consensus         2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e   77 (187)
T 3v6i_A            2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE   77 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788889999999999999999887    8888888877777655543    444556777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEec
Q 026949           88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD  167 (230)
Q Consensus        88 ~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd  167 (230)
                      +++++|+.|+++|.+++.++ .|+++|.+||.+|+..+++++++| |+|.|.++++.++++    +    |   +++..+
T Consensus        78 li~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~----~---~~~~~~  144 (187)
T 3v6i_A           78 VLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R----G---VELQAE  144 (187)
T ss_dssp             HHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H----T---CEEEEC
T ss_pred             HHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c----C---eeeCCC
Confidence            99999999999999999985 799999999999999999988866 999999999988764    2    2   233221


Q ss_pred             cccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcC
Q 026949          168 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  226 (230)
Q Consensus       168 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~  226 (230)
                                      .+|.|||+|+++||+|.|||||++||+.+|++++|+|++.|||
T Consensus       145 ----------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg  187 (187)
T 3v6i_A          145 ----------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG  187 (187)
T ss_dssp             ----------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ----------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence                            3789999999999999999999999999999999999999997

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.97  E-value=2.6e-31  Score=218.65  Aligned_cols=191  Identities=24%  Similarity=0.348  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE----RKEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~----~~~~~~~~~k~~~~S~~~~~~R~~~l~ar   85 (230)
                      ++++++.|+++|+.++++|+.+|+++++    .|+.+++.+...+..    ...++++..+++.+|...+..|..++.+|
T Consensus         4 le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~   79 (198)
T 2dm9_A            4 AELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQ   79 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666666655    555555444433332    22345566677788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 026949           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII  165 (230)
Q Consensus        86 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~  165 (230)
                      +++++.+|..|...|.+++ + +.|+++|.+||.+++..++++.++|+|+|.|.++++.+++.+...|+      ++.++
T Consensus        80 ~ev~~~~~~~a~~~l~~l~-~-~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~------~~~l~  151 (198)
T 2dm9_A           80 EEIISSVLEEVKRRLETMS-E-DEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIE  151 (198)
T ss_dssp             -CHHHHHHHHHHHHHHHCC-H-HHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEE
T ss_pred             HHHHHHHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc------CceEE
Confidence            9999999999999999975 3 38999999999999999888899999999999999999988777775      24667


Q ss_pred             eccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcC
Q 026949          166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  226 (230)
Q Consensus       166 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~  226 (230)
                      +++    |          ..+.|||+|.+.+|+|.|||||++||+.+++.+.|.|++.|||
T Consensus       152 i~~----~----------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~  198 (198)
T 2dm9_A          152 LGE----T----------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  198 (198)
T ss_dssp             ECC----C----------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             ECC----C----------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence            752    1          3789999999999999999999999999999999999999997

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=1.9e-26  Score=173.05  Aligned_cols=102  Identities=22%  Similarity=0.323  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHH-HHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcc
Q 026949          109 SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS  187 (230)
Q Consensus       109 ~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~-l~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~  187 (230)
                      .|+++|++||.+|+..+++++++|+|+++|.+++++. ++++..+|+..+|+ +++|++++       |       .+|.
T Consensus         4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~-------~-------~~~~   68 (106)
T 3lg8_A            4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE-------P-------VDIA   68 (106)
T ss_dssp             STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC-------C-------CSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC-------C-------cccc
Confidence            7999999999999999999999999999999999998 99999999988887 55555542       2       4899


Q ss_pred             cceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhc
Q 026949          188 GGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV  225 (230)
Q Consensus       188 GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF  225 (230)
                      |||+++|.||+|.|||||++||++++++++|+|++.||
T Consensus        69 GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~LF  106 (106)
T 3lg8_A           69 GGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKLF  106 (106)
T ss_dssp             CBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred             ccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=97.56  E-value=0.00028  Score=45.33  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026949            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (230)
Q Consensus         9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~   52 (230)
                      -|+++++.|+++|+.+|+.|+.+|+.+++    .|+.++..++.
T Consensus         7 gle~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae   46 (52)
T 2kk7_A            7 GVDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAE   46 (52)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            38999999999999999999999999988    89888776654

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=97.40  E-value=0.00036  Score=56.09  Aligned_cols=121  Identities=17%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Q 026949            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--------IEYSMQLNA   76 (230)
Q Consensus         5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~--------~~~S~~~~~   76 (230)
                      ++-++...+.++|+++|+++|++|+.+|+++|+.++..+++++...+..........+....+        .........
T Consensus        10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev~~~~~~~   89 (198)
T 2dm9_A           10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEE   89 (198)
T ss_dssp             -----------------------------------------------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678899999999999999999999999999999999999888777766555444332221        122333344


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHHHHHHHhcC
Q 026949           77 SRIKVLQ----AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLIVQSLLRLK  126 (230)
Q Consensus        77 ~R~~~l~----ar~~~i~~v~~~a~~~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~  126 (230)
                      ++..+..    ...+++..++.++...+..    +.-+| ...+++..++......++
T Consensus        90 a~~~l~~l~~~~y~~~l~~li~e~~~~~~~~~v~i~v~~-~D~~~v~~~~~~~~~~~~  146 (198)
T 2dm9_A           90 VKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNE-KTLGLIASRIEEIKSELG  146 (198)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHTCSEEEEECCH-HHHHHHHHTHHHHHHHCT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCEEEEECH-hHHHHHHHHHHHHHHHhc
Confidence            4433222    2357888888888887732    33356 556666888877666664

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=97.23  E-value=0.012  Score=47.24  Aligned_cols=114  Identities=18%  Similarity=0.126  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 026949            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY--------SMQLNAS   77 (230)
Q Consensus         6 ~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~--------S~~~~~~   77 (230)
                      .+.+.+.-.+.|+++|+.+|++|+.+|+++|+..+..+..+........+++....+....+...        .......
T Consensus         7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a   86 (187)
T 3v6i_A            7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV   86 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788899999999999999999999999777777777776666666666655554433222        2233344


Q ss_pred             HHHHHHH-----HHHHHHHHHHHHHHHHHh---hccChhHHHHHHHHHHHH
Q 026949           78 RIKVLQA-----QDDLVSNMMEAASKEVLN---VSRDHNSYKKLLKGLIVQ  120 (230)
Q Consensus        78 R~~~l~a-----r~~~i~~v~~~a~~~L~~---~~~~~~~Y~~~L~~Li~e  120 (230)
                      +..+.+.     ...++..++.++...|..   +.-+| .-..++..++..
T Consensus        87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~~~~vv~~~-~D~~~v~~~~~~  136 (187)
T 3v6i_A           87 REALEALPQKPEWPEVVRKLALEALEALPGAKALVANP-EDLPHLEALARE  136 (187)
T ss_dssp             HHHHHHGGGSTTHHHHHHHHHHHHHHHCTTCCEEEECT-TTHHHHHHHHHH
T ss_pred             HHHHHhhhCCccHHHHHHHHHHHHHHHcCCCCeEEECH-HHHHHHHHHHHh
Confidence            4333221     446667777766665532   11233 224466666554

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=95.55  E-value=0.19  Score=32.56  Aligned_cols=30  Identities=13%  Similarity=-0.044  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026949           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEA   46 (230)
Q Consensus        17 I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~   46 (230)
                      .+.+|+.++.+|+..|+.+++.....++..
T Consensus         3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~   32 (61)
T 1l2p_A            3 QLKKAKAEAQVIIEQANKRRSQILDEAKAE   32 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666666666666333333333

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=94.77  E-value=0.4  Score=31.01  Aligned_cols=49  Identities=20%  Similarity=0.300  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~   58 (230)
                      ...-...|+.+|+..+..|...+..++..+..+|+..+...|..+..+.
T Consensus         7 Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A   55 (61)
T 1l2p_A            7 AKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRA   55 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777777777777777777777777789888888776655443

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=94.24  E-value=0.13  Score=32.70  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus         4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~   37 (230)
                      +++..+-..-...|+.+|+.+|++|+.+|+.+++
T Consensus        13 ~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae   46 (52)
T 2kk7_A           13 SKILDDAKAEANKIISEAEAEKAKILEKAKEEAE   46 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667778889999999999999999999887

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=91.23  E-value=0.46  Score=30.52  Aligned_cols=27  Identities=22%  Similarity=0.139  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026949           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKK   50 (230)
Q Consensus        20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~k   50 (230)
                      +|+.+|++|+.+|.++++    .++.+++.+
T Consensus        23 eAE~~A~~iVeeA~~ea~----~ii~eAree   49 (56)
T 2k6i_A           23 LAEEQAVKEIEEAKNRAE----QIKAEAIEE   49 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            566677777777766655    555554444

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=87.52  E-value=10  Score=30.83  Aligned_cols=95  Identities=15%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (230)
Q Consensus        17 I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a   96 (230)
                      +..+.+.-..-|..+|+++|+    .|..++.++...+..+...++...    +......+...+-..++.....+...+
T Consensus        13 v~~~i~~m~~fI~qEA~eKA~----EI~~kAeeE~~~ek~~~v~~~~~~----i~~~~ek~~kq~e~~~~i~~S~~~~~a   84 (233)
T 4efa_E           13 VNDELNKMQAFIRKEAEEKAK----EIQLKADQEYEIEKTNIVRNETNN----IDGNFKSKLKKAMLSQQITKSTIANKM   84 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555667788888776    787666554443333332222221    112222222233334445556666666


Q ss_pred             HHHHHhhccChhHHHHHHHHHHHHHHHhc
Q 026949           97 SKEVLNVSRDHNSYKKLLKGLIVQSLLRL  125 (230)
Q Consensus        97 ~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l  125 (230)
                      +.++..      ...+++..++.++...|
T Consensus        85 R~~vL~------ar~e~i~~v~~~a~~~L  107 (233)
T 4efa_E           85 RLKVLS------AREQSLDGIFEETKEKL  107 (233)
T ss_dssp             HHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH------HHHHHHHHHHHHHHHHH
Confidence            665544      35677888888887766

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=84.30  E-value=1.6  Score=27.97  Aligned_cols=28  Identities=25%  Similarity=0.223  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949           10 IQQMVRFIRQEAEEKANEISVSAEEEFN   37 (230)
Q Consensus        10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~   37 (230)
                      .++-...|..+|++++++|+..|++++.
T Consensus        24 AE~~A~~iVeeA~~ea~~ii~eAreeAk   51 (56)
T 2k6i_A           24 AEEQAVKEIEEAKNRAEQIKAEAIEEAK   51 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999986

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=82.92  E-value=0.056  Score=43.43  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=15.1

Q ss_pred             CCCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949          183 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  216 (230)
Q Consensus       183 ~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~  216 (230)
                      +++++|||+|.-  |.-++|.|+.++|+.+...+
T Consensus       155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L  186 (190)
T 2wss_S          155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM  186 (190)
T ss_dssp             ----------------CCTTTTTTTTTTTTCTTT
T ss_pred             ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            358999999997  77779999999998776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d2dm9a1	118	d.81.4.1 (A:81-198) V-type ATP synthase subunit E	1e-25

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 94.5 bits (235), Expect = 1e-25
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 22/138 (15%)

Query: 87  DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146
           +++S+++E   + +  +S D   Y + +K L+ +++  L E  V +   +    L+ S +
Sbjct: 1   EIISSVLEEVKRRLETMSEDE--YFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58

Query: 147 ESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLD 206
           E  K E           I +                     GGV+V + DG+I  +NT +
Sbjct: 59  EEIKSELGDV------SIELGE--------------TVDTMGGVIVETEDGRIRIDNTFE 98

Query: 207 ARLDVVFRKKLPEIRKQL 224
           AR++    +    I K L
Sbjct: 99  ARMERFEGEIRSTIAKVL 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	99.95
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	96.52
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	96.39

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=3.2e-28  Score=184.26  Aligned_cols=118  Identities=25%  Similarity=0.403  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEe
Q 026949           87 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV  166 (230)
Q Consensus        87 ~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~v  166 (230)
                      ++|+++|++|.++|.+++++  +|+++|++||.+|+..+++++++|+|+|+|.++++++++++...|+      ...+++
T Consensus         1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~------~~~~~~   72 (118)
T d2dm9a1           1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIEL   72 (118)
T ss_dssp             CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEE
T ss_pred             CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC------CceeEe
Confidence            47999999999999999763  8999999999999999999999999999999999999987766654      245566


Q ss_pred             ccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcC
Q 026949          167 DHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  226 (230)
Q Consensus       167 d~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~  226 (230)
                      +.       +       .+|.|||||+|+||+|.|||||++||+.+|++++|+|++.|||
T Consensus        73 ~~-------~-------~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~i~~~LFG  118 (118)
T d2dm9a1          73 GE-------T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  118 (118)
T ss_dssp             CC-------C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CC-------C-------CccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHHHHHHccC
Confidence            52       1       4899999999999999999999999999999999999999998

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.014  Score=36.93  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026949           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (230)
Q Consensus        18 ~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~   58 (230)
                      +.+|+.+|.+|+.+|+..+.    .|+++.+.+...+.++.
T Consensus         4 L~eAK~eAa~Ii~qA~~ra~----qIveeak~~A~~Ea~rI   40 (61)
T d1l2pa_           4 LKKAKAEAQVIIEQANKRRS----QILDEAKAEAEQERTKI   40 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            34555555555555555444    45555554444444433

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.021  Score=36.08  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026949            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK   58 (230)
Q Consensus         9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~   58 (230)
                      +...-...|+.+|+..+.+|+.+|..++..+..+|+..++..|+.+..+.
T Consensus         6 eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A   55 (61)
T d1l2pa_           6 KAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRA   55 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556788999999999999999999999999999999988887665543