Citrus Sinensis ID: 026950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MSSTSQAMLNQSLFEEQEMPTQMGFFPFASNLNFAPLGNQSLKAFPSSLAAADVPSTINLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEcccccccccEEcccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSSTSQAMLNQSlfeeqemptqmgffpfasnlnfaplgnqslkafpsslaaadvpstINLTETLLSSAAAagnlkqttcdnlgggAQLLSLQRSSANLwawggdvneclsnkrtvddhHLGVAAMKMKKIksrrkvreprfcfktmsdidvlddgykwrkYGQKVvkntqhprsyyrctqdncRVKKRVErlaedprmvittyegrhvhspshdqedssqasshlnnffw
Flexible Loop (DISEMBL)
MSSTSQAMLNQSLFEEQEMPTQMGFFPFASNLNFAPLGNQSLKAFPSSLAAADVPSTINLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNkrtvddhhlgvaamkmkkiksrrkvreprfcfktmsdidvlddgyKWRKYGQkvvkntqhprsyyrctqdncrvkkrverlaedprmVITTYegrhvhspshdqedssqasshlnnffw
Low Complexity Region (SEG)
MSSTSQAMLNQSLFEEQEMPTQMGFFPFASNLNFAPLGNQSLKAFPSSLAAADVPSTINLTETllssaaaaGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW
Disordered region (IsUnstruct)
***********************GFFPFASNLNFAPLGNQSLKAFPSSLAAADVPSTINLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTY***************************
Disordered Region (DISOPRED)
**********************************************************************************************************************************************FKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRH********************FFW
Disordered Region (DISEMBL)
********LNQSLFEEQEMPTQMGFFPFASNLNFAPLGNQSLKAFPSSLAAADVPSTINLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGR*****************HLNNFFW
Disordered Region (DISPRO)
**********************M****************************************************************************************************************VREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRH***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSTSQAMLNQSLFEEQEMPTQMGFFPFASNLNFAPLGNQSLKAFPSSLAAADVPSTINLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9SVB7	304	Probable WRKY transcripti	yes	no	0.821	0.621	0.494	1e-51
Q93WY4	218	Probable WRKY transcripti	no	no	0.565	0.596	0.627	2e-39
Q9C983	287	Probable WRKY transcripti	no	no	0.356	0.285	0.634	2e-28
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.317	0.182	0.698	2e-26
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.782	0.566	0.377	3e-26
Q9FFS3	179	Probable WRKY transcripti	no	no	0.365	0.469	0.630	5e-26
Q9XI90	514	Probable WRKY transcripti	no	no	0.439	0.196	0.5	7e-26
Q9C5T3	309	Probable WRKY transcripti	no	no	0.4	0.297	0.553	8e-26
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.334	0.150	0.615	1e-25
Q93WV0	557	Probable WRKY transcripti	no	no	0.378	0.156	0.538	1e-25

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/253 (49%), Positives = 151/253 (59%), Gaps = 64/253 (25%)

Query: 37  LGNQSLKAF----PSSLAAADVPST---INLTETLLSSAAAAGNLKQTTCDNLGGGAQL- 88
           LG+ SL +F    PSS  +    S     NL ETL+SS +++   KQ   D+  G   L 
Sbjct: 57  LGHNSLNSFLHNNPSSFISHPQDSINLMTNLPETLISSLSSS---KQR--DDHDGFLNLD 111

Query: 89  -------LSLQRSSANLWAWGGDVNECLSNKRT------VDD------------------ 117
                  +S QR  +N WAW        S K        VDD                  
Sbjct: 112 HHRLTGSISSQRPLSNPWAWSCQAGYGSSQKNNHGSEIDVDDNDDEVGDGGGINDDDNGR 171

Query: 118 --HH-------------LGV-AAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKY 161
             HH             LGV +++KMKK+K+RRKVREPRFCFKT+S++DVLDDGY+WRKY
Sbjct: 172 HHHHDTPSRHDKHNTASLGVVSSLKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKY 231

Query: 162 GQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQA 221
           GQKVVKNTQHPRSYYRCTQD CRVKKRVERLA+DPRMVITTYEGRH+HSPS+  +D S +
Sbjct: 232 GQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHSPSNHLDDDSLS 291

Query: 222 SSHLN----NFFW 230
           +SHL+    NFFW
Sbjct: 292 TSHLHPPLSNFFW 304

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 98/137 (71%), Gaps = 7/137 (5%)

Query: 80  DNLGGGAQLLSLQRSSANLWAWGGDVNECLSNK--RTVDDHHLGVAAMKMKKIKSRRKVR 137
           +NL GG  L S   +       GG  N+  SN   R+    + G   MK  K+K RRK+R
Sbjct: 75  NNLQGGGPLGSKVVNDDQENFGGGTNNDAHSNSWWRS----NSGSGDMK-NKVKIRRKLR 129

Query: 138 EPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPR 197
           EPRFCF+T SD+DVLDDGYKWRKYGQKVVKN+ HPRSYYRCT +NCRVKKRVERL+ED R
Sbjct: 130 EPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCR 189

Query: 198 MVITTYEGRHVHSPSHD 214
           MVITTYEGRH H PS D
Sbjct: 190 MVITTYEGRHNHIPSDD 206

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 67/82 (81%)

Query: 128 KKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKK 187
           +K K+++++R+PRF F T SD+D L+DGY+WRKYGQK VKN+  PRSYYRCT   C VKK
Sbjct: 122 EKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKK 181

Query: 188 RVERLAEDPRMVITTYEGRHVH 209
           RVER ++DP +VITTYEG+H H
Sbjct: 182 RVERSSDDPSIVITTYEGQHCH 203

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 59/73 (80%)

Query: 137 REPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDP 196
           RE RF F T SDID LDDGY+WRKYGQK VKN+ +PRSYYRCT   C VKKRVER ++DP
Sbjct: 205 REARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDP 264

Query: 197 RMVITTYEGRHVH 209
            +V+TTYEG+H H
Sbjct: 265 SIVMTTYEGQHTH 277

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 110/204 (53%), Gaps = 24/204 (11%)

Query: 19  MPTQMGFFP----FASNLNFAPLGNQSL--KAFPSSLAAADVPSTINLTETLLSSAAAAG 72
           +P+Q GF P    F   L  +P   +SL  K F  S ++++V           +S+    
Sbjct: 36  LPSQNGFNPSTYSFTDCLQSSPAAYESLLQKTFGLSPSSSEV----------FNSSIDQE 85

Query: 73  NLKQTTCDNLGGGA------QLLSLQRSSANLWAWGGDVNECLSNKRTV-DDHHLGVAAM 125
             +  T D + GGA      ++     SS+     G D  +    +  V ++  +     
Sbjct: 86  PNRDVTNDVINGGACNETETRVSPSNSSSSEADHPGEDSGKSRRKRELVGEEDQISKKVG 145

Query: 126 KMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRV 185
           K KK + +++ REPR  F T S++D L+DGY+WRKYGQK VKN+ +PRSYYRCT   C V
Sbjct: 146 KTKKTEVKKQ-REPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNV 204

Query: 186 KKRVERLAEDPRMVITTYEGRHVH 209
           KKRVER  +DP +VITTYEG+H H
Sbjct: 205 KKRVERSFQDPTVVITTYEGQHNH 228

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS3|WRK24_ARATH Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 64/84 (76%)

Query: 126 KMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRV 185
           K K++K +R  + PR  F T SD DVLDDGY+WRKYGQK VK+  HPRSYYRCT   C V
Sbjct: 71  KGKELKEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNV 130

Query: 186 KKRVERLAEDPRMVITTYEGRHVH 209
           KK+V+RLA+DP +V+TTYEG H H
Sbjct: 131 KKQVQRLAKDPNVVVTTYEGVHNH 154

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  117 bits (293), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 68/106 (64%), Gaps = 5/106 (4%)

Query: 104 DVNECLSNKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQ 163
           D NE    +R+ +     V   +     S R V EPR   +T S++D+LDDGY+WRKYGQ
Sbjct: 365 DENEPDPKRRSTE-----VRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQ 419

Query: 164 KVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVH 209
           KVVK   +PRSYY+CT   C V+K VER A DP+ V+TTYEG+H H
Sbjct: 420 KVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNH 465

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 65/94 (69%)

Query: 116 DDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSY 175
           D   +G    + K+ K    V+EPR   +T SDID+LDDGY+WRKYGQKVVK   +PRSY
Sbjct: 197 DGKDIGEDETEAKRWKREENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSY 256

Query: 176 YRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVH 209
           Y+CT   C V+K VER  +DP+ VITTYEG+H H
Sbjct: 257 YKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKH 290

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 60/78 (76%)

Query: 132 SRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVER 191
           S R V EPR   +T S++D+LDDGY+WRKYGQKVVK   +PRSYY+CT  +C V+K VER
Sbjct: 394 SHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVER 453

Query: 192 LAEDPRMVITTYEGRHVH 209
            A DP+ V+TTYEG+H H
Sbjct: 454 AATDPKAVVTTYEGKHNH 471

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 4/91 (4%)

Query: 134 RKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLA 193
           + +REPR   +T+S++D+LDDGY+WRKYGQKVV+   +PRSYY+CT   C V+K VER +
Sbjct: 362 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERAS 421

Query: 194 EDPRMVITTYEGRHVHSPSHDQEDSSQASSH 224
            DP+ VITTYEG+H     HD   S  +S+H
Sbjct: 422 HDPKAVITTYEGKH----DHDVPTSKSSSNH 448

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
225438505	226	PREDICTED: probable WRKY transcription f	0.965	0.982	0.760	7e-93
224093912	233	predicted protein [Populus trichocarpa]	0.982	0.969	0.704	1e-83
351725261	235	WRKY40 [Glycine max] gi|83630931|gb|ABC2	0.973	0.953	0.676	5e-81
118483117	232	unknown [Populus trichocarpa]	0.982	0.974	0.707	2e-80
255629277	235	unknown [Glycine max]	0.973	0.953	0.672	3e-80
343410567	232	WRKY transcription factor 10 [(Populus t	0.982	0.974	0.699	2e-79
356511135	240	PREDICTED: LOW QUALITY PROTEIN: probable	0.965	0.925	0.635	1e-74
224081286	213	predicted protein [Populus trichocarpa]	0.904	0.976	0.709	1e-73
302399137	270	WRKY domain class transcription factor [	0.991	0.844	0.617	1e-72
356509024	233	PREDICTED: probable WRKY transcription f	0.991	0.978	0.659	5e-67

>gi|225438505|ref|XP_002279024.1| PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera] gi|296082529|emb|CBI21534.3| unnamed protein product [Vitis vinifera] gi|383793376|gb|AFH53058.1| WRKY13 transcription factor [Vitis amurensis]

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 178/234 (76%), Positives = 200/234 (85%), Gaps = 12/234 (5%)

Query: 1   MSSTSQAMLNQSLFEEQEMPTQMGFFPFASNLNFAPLG-NQSLKAF--PSSLAAADVPST 57
           MS+TSQAMLNQ LFE+QEMP+Q+GF+ F  NL+F  +G  QSLKAF  P SLAA D PS+
Sbjct: 1   MSTTSQAMLNQGLFEDQEMPSQLGFYSFHPNLSFPQVGCQQSLKAFNIPPSLAA-DAPSS 59

Query: 58  INLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRTVD- 116
             LTE LLSSA      ++    +LGG AQLLSLQRS+ANLWAWG +VNECLS+KR++  
Sbjct: 60  --LTEALLSSAPT--KQREDITPHLGG-AQLLSLQRSTANLWAWG-EVNECLSSKRSIGG 113

Query: 117 DHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYY 176
           D HLGV+AMKMKKIK+RRKVREPRFCFKTMS++DVLDDGYKWRKYGQKVVKNTQHPRSYY
Sbjct: 114 DDHLGVSAMKMKKIKARRKVREPRFCFKTMSEVDVLDDGYKWRKYGQKVVKNTQHPRSYY 173

Query: 177 RCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW 230
           RCTQDNCRVKKRVERLAEDPRMVITTYEGRH+HSPSHD E+ SQA SHLNNFFW
Sbjct: 174 RCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDLEE-SQAPSHLNNFFW 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093912|ref|XP_002310044.1| predicted protein [Populus trichocarpa] gi|222852947|gb|EEE90494.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 190/237 (80%), Gaps = 11/237 (4%)

Query: 1   MSSTSQA-MLNQS-LFEEQEMPTQMGFFPFASNLNFAPLG--NQSLKAF--PSSLAAADV 54
           M++  QA +LNQ  LFE+QEMPTQMGFF F S+L +  LG  +QS K F  P SLAA D 
Sbjct: 1   MAAAPQATVLNQQPLFEDQEMPTQMGFFSFPSHLTYPQLGSCHQSSKGFIIPPSLAA-DA 59

Query: 55  PSTINLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRT 114
           PST N+ ETLL S+A     + T   +LGG   LLSLQRS ANLWAWG +VNECLS KR+
Sbjct: 60  PSTTNIAETLLLSSATHKQREGTFASDLGG-PHLLSLQRSRANLWAWG-EVNECLSRKRS 117

Query: 115 -VDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPR 173
              + HLG++++KMKKIK+RRKVREPRFCFKTMSD+DVLDDGYKWRKYGQKVVKNTQHPR
Sbjct: 118 GSGEDHLGLSSIKMKKIKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPR 177

Query: 174 SYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW 230
           SYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRH HSPS D E+ SQA S L+NFF+
Sbjct: 178 SYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSLDLEE-SQAPSQLSNFFF 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725261|ref|NP_001237342.1| WRKY40 [Glycine max] gi|83630931|gb|ABC26914.1| WRKY40 [Glycine max]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 161/238 (67%), Positives = 185/238 (77%), Gaps = 14/238 (5%)

Query: 1   MSSTSQAMLNQSLFEEQ-EMPTQMGFFPFASNLNFAPLG--NQSLKAF----PSSLAAAD 53
           MS+TS  +++ SLF+EQ ++PTQMGFF F +NL F PLG    SLKAF    PSSLA + 
Sbjct: 1   MSTTSHPIVHHSLFDEQDQIPTQMGFFSFPTNLTFPPLGCHQSSLKAFSSIAPSSLAISQ 60

Query: 54  VPSTINLT-ETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNK 112
           + S  NLT ETL S+ A     ++    + GGG Q LSL RSS N WA G +V EC S+K
Sbjct: 61  LDSASNLTAETLFSTTAQKS--REDLTSSFGGG-QFLSLHRSSVNPWALG-EVAECFSSK 116

Query: 113 RT-VDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQH 171
           R+  DDHH  ++AMKMKKIK+RRKVREPRFCFKTMSD+DVLDDGYKWRKYGQKVVKNTQH
Sbjct: 117 RSGFDDHHFRISAMKMKKIKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQH 176

Query: 172 PRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFF 229
           PRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPS+D ED SQ  S L++F 
Sbjct: 177 PRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLED-SQTPSQLDSFL 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483117|gb|ABK93467.1| unknown [Populus trichocarpa]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/236 (70%), Positives = 188/236 (79%), Gaps = 10/236 (4%)

Query: 1   MSSTSQAMLNQS-LFEEQEMPTQMGFFPFASNLNFAPLG--NQSLKAF--PSSLAAADVP 55
           M++TSQA LNQ  LFE+QEMPTQMGFF F  +L +      +QSLK F  P SLAA D P
Sbjct: 1   MATTSQATLNQQPLFEDQEMPTQMGFFSFPPHLTYPQSASCHQSLKGFIIPPSLAA-DAP 59

Query: 56  STINLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRT- 114
           ST NLTETLL S+      + T   +LGG   LLSLQRSSANLWAWG +VNECL++KR+ 
Sbjct: 60  STTNLTETLLLSSVTNKQREDTIASDLGG-PHLLSLQRSSANLWAWG-EVNECLNSKRSG 117

Query: 115 VDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRS 174
               HLGV+ +K+KKIK+RRKVREPRFCFKT+SD+DVLDDGYKWRKYGQKVVKNTQHPRS
Sbjct: 118 SGGDHLGVSTIKLKKIKARRKVREPRFCFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRS 177

Query: 175 YYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW 230
           YYRCTQDNCRVKKRVERLAEDPRMVITTYEGRH HSPSHD E+ SQ  S  NNFF+
Sbjct: 178 YYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSHDLEE-SQTPSQFNNFFF 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629277|gb|ACU14983.1| unknown [Glycine max]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 160/238 (67%), Positives = 184/238 (77%), Gaps = 14/238 (5%)

Query: 1   MSSTSQAMLNQSLFEEQ-EMPTQMGFFPFASNLNFAPLG--NQSLKAF----PSSLAAAD 53
           MS+TS  +++ SLF+EQ ++PTQMGFF F +NL F PLG    SLKAF    PSSLA + 
Sbjct: 1   MSTTSHPIVHHSLFDEQDQIPTQMGFFSFPTNLTFPPLGCHQSSLKAFSSIAPSSLAISQ 60

Query: 54  VPSTINLT-ETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNK 112
             S  NLT ETL S+ A     ++    + GGG Q LSL RSS N WA G +V EC S+K
Sbjct: 61  QDSASNLTAETLFSTTAQKS--REDLTSSFGGG-QFLSLHRSSVNPWALG-EVAECFSSK 116

Query: 113 RT-VDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQH 171
           R+  DDHH  ++AMKMKKI++RRKVREPRFCFKTMSD+DVLDDGYKWRKYGQKVVKNTQH
Sbjct: 117 RSGFDDHHFRISAMKMKKIEARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQH 176

Query: 172 PRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFF 229
           PRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPS+D ED SQ  S L++F 
Sbjct: 177 PRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLED-SQTPSQLDSFL 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343410567|gb|ACV92012.2| WRKY transcription factor 10 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/236 (69%), Positives = 184/236 (77%), Gaps = 10/236 (4%)

Query: 1   MSSTSQAMLNQS-LFEEQEMPTQMGFFPFASNLNFAPLGN--QSLKAF--PSSLAAADVP 55
           M++TSQA LNQ  LFE+QEMPTQMGFF F  +L +    +  QSLK F  P SLAA D P
Sbjct: 1   MATTSQATLNQQPLFEDQEMPTQMGFFSFPPHLAYPQSASCQQSLKGFIIPPSLAA-DAP 59

Query: 56  STINLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRT- 114
           ST NLT TLL S+A     +       GG   LLSLQRS ANLWAWG +VNECL++KR+ 
Sbjct: 60  STTNLTGTLLLSSATNKQREDIIASEFGG-PHLLSLQRSGANLWAWG-EVNECLNSKRSG 117

Query: 115 VDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRS 174
               HLGV+ +KMKKIK+RRKVREPRFCFKT+SD+DVLDDGYKWRKYGQKVVKNTQHPRS
Sbjct: 118 SGGDHLGVSTIKMKKIKARRKVREPRFCFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRS 177

Query: 175 YYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW 230
           YYRCTQDNCRVKKRVERLAEDPRMVITTYEGRH HSPSHD E+ SQ  S  NNFF+
Sbjct: 178 YYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSHDLEE-SQTPSQFNNFFF 232

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511135|ref|XP_003524285.1| PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 13-like [Glycine max]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/239 (63%), Positives = 175/239 (73%), Gaps = 17/239 (7%)

Query: 1   MSSTSQAMLNQSLFEEQ-EMPTQMGFFPFASNLNFAPLG--NQSLKAFPS-----SLAAA 52
           MS+TS ++++ SLFEEQ +MPTQ+GFFPF +NL F PLG    SLKAF S     SL  +
Sbjct: 1   MSTTSHSIVHHSLFEEQDQMPTQIGFFPFPTNLTFPPLGCHQSSLKAFSSIAPSSSLVIS 60

Query: 53  DVPSTINLT-ETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSN 111
              S  NLT ETL S+ A       T+      GAQ LSL R S N WA G +V +C S+
Sbjct: 61  QQDSVSNLTAETLFSTTAQKSREDLTSSFR---GAQFLSLHRLSVNPWALG-EVADCFSS 116

Query: 112 KRT-VDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQ 170
           KR+ +DDHHL ++A KMKKIK+RRKVREPRFCFKTMSD+D LDDGYKWRKYGQKVVK T 
Sbjct: 117 KRSGIDDHHLEISATKMKKIKARRKVREPRFCFKTMSDMDELDDGYKWRKYGQKVVKGTH 176

Query: 171 HPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFF 229
           HPRSYYRC QDNCRVKKRVER AEDPRMVITTYEGRHVHSPS+D ED     S L++F 
Sbjct: 177 HPRSYYRCIQDNCRVKKRVERFAEDPRMVITTYEGRHVHSPSNDLED---XPSQLDSFL 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081286|ref|XP_002306363.1| predicted protein [Populus trichocarpa] gi|222855812|gb|EEE93359.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/217 (70%), Positives = 172/217 (79%), Gaps = 9/217 (4%)

Query: 19  MPTQMGFFPFASNLNFAPLG--NQSLKAF--PSSLAAADVPSTINLTETLLSSAAAAGNL 74
           MPTQMGFF F  +L +      +QSLK F  P SLAA D PST NLTETLL S+      
Sbjct: 1   MPTQMGFFSFPPHLTYPQSASCHQSLKGFIIPPSLAA-DAPSTTNLTETLLLSSVTNKQR 59

Query: 75  KQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRT-VDDHHLGVAAMKMKKIKSR 133
           + T   +LGG   LLSLQRSSANLWAWG +VNECL++KR+     HLGV+ +K+KKIK+R
Sbjct: 60  EDTIASDLGG-PHLLSLQRSSANLWAWG-EVNECLNSKRSGSGGDHLGVSTIKLKKIKAR 117

Query: 134 RKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLA 193
           RKVREPRFCFKT+SD+DVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLA
Sbjct: 118 RKVREPRFCFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLA 177

Query: 194 EDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW 230
           EDPRMVITTYEGRH HSPSHD E+ SQ  S  NNFF+
Sbjct: 178 EDPRMVITTYEGRHAHSPSHDLEE-SQTPSQFNNFFF 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399137|gb|ADL36863.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 166/269 (61%), Positives = 190/269 (70%), Gaps = 41/269 (15%)

Query: 2   SSTSQA-MLNQ-----SLFEEQEMP---TQMGFFPFASNLNFAPL---GNQSLKAFPS-- 47
           S TSQA +LNQ      LFE QE     TQMGFF F  NL F+ L   G+QSLK   S  
Sbjct: 3   SRTSQAAILNQQQQQLGLFENQEGEGCNTQMGFFHFPPNLTFSSLPFLGHQSLKGGFSTA 62

Query: 48  SLAAADVPSTINLTETLLSSAAAAG---------NLKQTTCD----NLGGGAQLLSLQRS 94
           S+A+ D PST  L+ETL+   +            N+  T+ +      G  A LLSLQRS
Sbjct: 63  SIASDDAPSTTTLSETLVPRPSLTPSPLRHKQDHNITTTSSEFGGGGGGAHAHLLSLQRS 122

Query: 95  SANLWAWGGDVNE-----CLSNKRTV---DDHHL---GVAAMKMKKIKS-RRKVREPRFC 142
           +ANLWAWG DV++     CL++KR+    D HH    GV+AMKMKK+K+ RRKVREPRFC
Sbjct: 123 TANLWAWG-DVSDDRDEYCLNSKRSSGGDDQHHPYLGGVSAMKMKKMKAIRRKVREPRFC 181

Query: 143 FKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITT 202
           FKT+SD+DVLDDGYKWRKYGQKVVKNTQHPRSYYRCT DNCRVKKRVERLAEDPRMVITT
Sbjct: 182 FKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTMDNCRVKKRVERLAEDPRMVITT 241

Query: 203 YEGRHVHSPSHDQED-SSQASSHLNNFFW 230
           YEGRHVHSPSHD ED  S++ SHLNNFFW
Sbjct: 242 YEGRHVHSPSHDLEDQDSRSPSHLNNFFW 270

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509024|ref|XP_003523252.1| PREDICTED: probable WRKY transcription factor 13 [Glycine max]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 155/235 (65%), Positives = 177/235 (75%), Gaps = 7/235 (2%)

Query: 1   MSSTSQAMLNQSLFEEQ-EMPTQMGFF--PFASNLNFAPLGNQSLKAFPSSLAAADVPST 57
           MS+TSQ  +N SLFEEQ ++PTQMG F  PF  N  + PLG Q+      S  A  + S 
Sbjct: 1   MSTTSQTNVNHSLFEEQDQIPTQMGLFNIPFPPNQTYPPLGCQTGTLKSISAIAPSLSSA 60

Query: 58  INLTETLLSSAAAAGNLKQTTCDNLGGGAQLLSLQRSSANLWAWGGDVNECLSNKRTV-- 115
            + +ETLLS+A        T+    GGG QLLSL RS  N WAW  +V++CL  KR    
Sbjct: 61  TSFSETLLSTAVQRPREDLTSNLLAGGGGQLLSLNRSRVNSWAWE-EVSDCLMGKRIGGD 119

Query: 116 DDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSY 175
           D+HHLGV+AMKMKK+K+RRKVREPRFCFKTMSD+DVLDDGYKWRKYGQKVVKNTQHPRSY
Sbjct: 120 DNHHLGVSAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSY 179

Query: 176 YRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLNNFFW 230
           YRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPS++ ED SQ  S L+NF W
Sbjct: 180 YRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELED-SQTPSELSNFLW 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2122496	304	WRKY13 "WRKY DNA-binding prote	0.5	0.378	0.747	3.7e-50
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.778	0.821	0.508	9.9e-39
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.365	0.210	0.658	1.4e-29
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.365	0.292	0.635	1e-27
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.869	0.628	0.377	4.5e-27
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.378	0.156	0.538	5.1e-27
TAIR|locus:2024583	195	WRKY56 "WRKY DNA-binding prote	0.469	0.553	0.522	9.4e-27
TAIR|locus:2160512	179	WRKY24 "WRKY DNA-binding prote	0.365	0.469	0.630	2.5e-26
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.473	0.386	0.530	5.2e-26
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.430	0.320	0.535	1.8e-25

TAIR|locus:2122496 WRKY13 "WRKY DNA-binding protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 92/123 (74%), Positives = 109/123 (88%)

Query:   116 DDHH---LGV-AAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQH 171
             D H+   LGV +++KMKK+K+RRKVREPRFCFKT+S++DVLDDGY+WRKYGQKVVKNTQH
Sbjct:   182 DKHNTASLGVVSSLKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQH 241

Query:   172 PRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHLN----N 227
             PRSYYRCTQD CRVKKRVERLA+DPRMVITTYEGRH+HSPS+  +D S ++SHL+    N
Sbjct:   242 PRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHSPSNHLDDDSLSTSHLHPPLSN 301

Query:   228 FFW 230
             FFW
Sbjct:   302 FFW 304

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 94/185 (50%), Positives = 113/185 (61%)

Query:    31 NLNF-APLGNQSLKAFPSSLAAADVPSTINLTETXXXXXXXXGNLKQTTCDNLGGGAQLL 89
             N+NF  P    ++  F SS +++ + S                 L  +  +NL GG  L 
Sbjct:    27 NMNFLVPFEETNVLTFFSSSSSSSLSSPSFPIHNSSSTTTTHAPLGFS--NNLQGGGPLG 84

Query:    90 SLQRSSANLWAWGGDVNECLSNKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDI 149
             S   +       GG  N+  SN     +   G   MK  K+K RRK+REPRFCF+T SD+
Sbjct:    85 SKVVNDDQENFGGGTNNDAHSNSWWRSNS--GSGDMK-NKVKIRRKLREPRFCFQTKSDV 141

Query:   150 DVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVH 209
             DVLDDGYKWRKYGQKVVKN+ HPRSYYRCT +NCRVKKRVERL+ED RMVITTYEGRH H
Sbjct:   142 DVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201

Query:   210 SPSHD 214
              PS D
Sbjct:   202 IPSDD 206

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 56/85 (65%), Positives = 68/85 (80%)

Query:   125 MKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCR 184
             +K KK K+++K RE RF F T SDID LDDGY+WRKYGQK VKN+ +PRSYYRCT   C 
Sbjct:   194 LKAKK-KNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCG 252

Query:   185 VKKRVERLAEDPRMVITTYEGRHVH 209
             VKKRVER ++DP +V+TTYEG+H H
Sbjct:   253 VKKRVERSSDDPSIVMTTYEGQHTH 277

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 54/85 (63%), Positives = 69/85 (81%)

Query:   125 MKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCR 184
             +K KK K+++++R+PRF F T SD+D L+DGY+WRKYGQK VKN+  PRSYYRCT   C 
Sbjct:   120 VKEKK-KAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCT 178

Query:   185 VKKRVERLAEDPRMVITTYEGRHVH 209
             VKKRVER ++DP +VITTYEG+H H
Sbjct:   179 VKKRVERSSDDPSIVITTYEGQHCH 203

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 80/212 (37%), Positives = 113/212 (53%)

Query:    19 MPTQMGFFPFASNLNFAPLGNQSLKAFPSSLAAADVPSTINLTETXXXXXXXXGNLKQTT 78
             +P+Q GF P  S  +F      S  A+ S L      S  + +E          N +  T
Sbjct:    36 LPSQNGFNP--STYSFTDCLQSSPAAYESLLQKTFGLSPSS-SEVFNSSIDQEPN-RDVT 91

Query:    79 CDNLGGGA-----QLLSLQRSSANLWAWGGDVNECLSNKRTV--DDHHLGVAAMKMKKIK 131
              D + GGA       +S   SS++     G+ +     KR +  ++  +     K KK +
Sbjct:    92 NDVINGGACNETETRVSPSNSSSSEADHPGEDSGKSRRKRELVGEEDQISKKVGKTKKTE 151

Query:   132 SRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVER 191
              +++ REPR  F T S++D L+DGY+WRKYGQK VKN+ +PRSYYRCT   C VKKRVER
Sbjct:   152 VKKQ-REPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVER 210

Query:   192 LAEDPRMVITTYEGRHVHSPSHDQEDSSQASS 223
               +DP +VITTYEG+H H    +   SS A++
Sbjct:   211 SFQDPTVVITTYEGQHNHPIPTNLRGSSAAAA 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 5.1e-27, Sum P(2) = 5.1e-27
 Identities = 49/91 (53%), Positives = 66/91 (72%)

Query:   134 RKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLA 193
             + +REPR   +T+S++D+LDDGY+WRKYGQKVV+   +PRSYY+CT   C V+K VER +
Sbjct:   362 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERAS 421

Query:   194 EDPRMVITTYEGRHVHSPSHDQEDSSQASSH 224
              DP+ VITTYEG+H     HD   S  +S+H
Sbjct:   422 HDPKAVITTYEGKH----DHDVPTSKSSSNH 448

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2024583 WRKY56 "WRKY DNA-binding protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 59/113 (52%), Positives = 71/113 (62%)

Query:    97 NLWAWGGDVNECLSNKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGY 156
             N    GG++   +SN     DH+         K K +R +   R  F T SD DVLDDGY
Sbjct:    63 NFRGGGGEMGGLVSNNSNNSDHN-----KNCNKGKGKRTLAMQRIAFHTRSDDDVLDDGY 117

Query:   157 KWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVH 209
             +WRKYGQK VKN  HPRSYYRCT   C VKK+V+RLA+DP +V+TTYEG H H
Sbjct:   118 RWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 170

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2160512 WRKY24 "WRKY DNA-binding protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/84 (63%), Positives = 64/84 (76%)

Query:   126 KMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRV 185
             K K++K +R  + PR  F T SD DVLDDGY+WRKYGQK VK+  HPRSYYRCT   C V
Sbjct:    71 KGKELKEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNV 130

Query:   186 KKRVERLAEDPRMVITTYEGRHVH 209
             KK+V+RLA+DP +V+TTYEG H H
Sbjct:   131 KKQVQRLAKDPNVVVTTYEGVHNH 154

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 60/113 (53%), Positives = 74/113 (65%)

Query:   116 DDHHLGVAAM---KMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHP 172
             D H +G ++    K  K K  +K RE R  F T S+ID L+DGY+WRKYGQK VKN+ +P
Sbjct:    96 DLHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYP 155

Query:   173 RSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDQEDSSQASSHL 225
             RSYYRCT   C VKKRVER  +DP +VITTYEG+H H P       + A+ HL
Sbjct:   156 RSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNH-PIPSTLRGTVAAEHL 207

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 53/99 (53%), Positives = 66/99 (66%)

Query:   111 NKRTVDDHHLGVAAMKMKKIKSRRKVREPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQ 170
             N    D   +G    + K+ K    V+EPR   +T SDID+LDDGY+WRKYGQKVVK   
Sbjct:   192 NSSNGDGKDIGEDETEAKRWKREENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP 251

Query:   171 HPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVH 209
             +PRSYY+CT   C V+K VER  +DP+ VITTYEG+H H
Sbjct:   252 NPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKH 290

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019365001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (219 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-37
smart00774	59	smart00774, WRKY, DNA binding domain	1e-35

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  124 bits (314), Expect = 2e-37
 Identities = 38/60 (63%), Positives = 44/60 (73%)

Query: 152 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSP 211
           LDDGY WRKYGQK VK +  PRSYYRCT   C VKK+VER ++DP++V  TYEG H H  
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  120 bits (303), Expect = 1e-35
 Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 152 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQD-NCRVKKRVERLAEDPRMVITTYEGRHVH 209
           LDDGY+WRKYGQKV+K + +PRSYYRCT    C  KK+V+R  +DP +V  TYEG H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.05

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=3.9e-33  Score=201.32  Aligned_cols=59  Identities=63%  Similarity=1.192  Sum_probs=52.6

Q ss_pred             CCCCchhhhccceecCCCCCCCcccccCCCCCccccceeeecCCCCEEEEEEeeccCCC
Q 026950          152 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS  210 (230)
Q Consensus       152 ~~DGy~WRKYGQK~IkGs~~PRsYYRCt~~gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH~  210 (230)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            48999999999999999999999999999999999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=4.5e-32  Score=196.28  Aligned_cols=58  Identities=62%  Similarity=1.190  Sum_probs=56.5

Q ss_pred             CCCCchhhhccceecCCCCCCCcccccCC-CCCccccceeeecCCCCEEEEEEeeccCC
Q 026950          152 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQ-DNCRVKKRVERLAEDPRMVITTYEGRHVH  209 (230)
Q Consensus       152 ~~DGy~WRKYGQK~IkGs~~PRsYYRCt~-~gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH  209 (230)
                      ++|||.|||||||.|+|+++||+||||++ +||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 89999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.05  E-value=0.063  Score=36.28  Aligned_cols=49  Identities=29%  Similarity=0.649  Sum_probs=23.6

Q ss_pred             cCCCCchhhhccceecCCCCCCCcccccCCC---CCccccceeeecCCCCEEEEEEeeccCC
Q 026950          151 VLDDGYKWRKYGQKVVKNTQHPRSYYRCTQD---NCRVKKRVERLAEDPRMVITTYEGRHVH  209 (230)
Q Consensus       151 ~~~DGy~WRKYGQK~IkGs~~PRsYYRCt~~---gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH  209 (230)
                      ++-|||.-.+....      ....|++|+..   +|+|+=.+.  .++ ..+ +...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~~~-~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-GRV-VRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-TEE-EE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-CEE-EECCCccCC
Confidence            34578776654443      44689999974   899987766  223 333 334499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		4e-22
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-18

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 53/67 (79%)
Query: 143 FKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITT 202
            +T S++D+LDDGY+WRKYGQKVVK   +PRSYY+CT   C V+K VER A DP+ V+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 203 YEGRHVH 209
           YEG+H H
Sbjct: 68  YEGKHNH 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 51/70 (72%)
Query: 140 RFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMV 199
           R    T +  D+++DGY+WRKYGQK VK + +PRSYYRC+   C VKK VER + D +++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 200 ITTYEGRHVH 209
           ITTYEG+H H
Sbjct: 62  ITTYEGKHDH 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-45
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	6e-42

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  144 bits (365), Expect = 4e-45
 Identities = 42/75 (56%), Positives = 53/75 (70%)

Query: 137 REPRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDP 196
                  +T S++D+LDDGY+WRKYGQKVVK   +PRSYY+CT   C V+K VER A DP
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 197 RMVITTYEGRHVHSP 211
           + V+TTYEG+H H  
Sbjct: 62  KAVVTTYEGKHNHDL 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  136 bits (343), Expect = 6e-42
 Identities = 38/72 (52%), Positives = 51/72 (70%)

Query: 140 RFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMV 199
           R    T +  D+++DGY+WRKYGQK VK + +PRSYYRC+   C VKK VER + D +++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 200 ITTYEGRHVHSP 211
           ITTYEG+H H  
Sbjct: 62  ITTYEGKHDHDM 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=3.8e-36  Score=226.01  Aligned_cols=74  Identities=51%  Similarity=0.970  Sum_probs=71.1

Q ss_pred             ceEEeecCCcccCCCCchhhhccceecCCCCCCCcccccCCCCCccccceeeecCCCCEEEEEEeeccCCCCCC
Q 026950          140 RFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSH  213 (230)
Q Consensus       140 rv~~kt~S~~~~~~DGy~WRKYGQK~IkGs~~PRsYYRCt~~gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH~ps~  213 (230)
                      ||++++.+++++++|||.|||||||.|||+++||+||||++.||+|+|+|||+++||.+++|||+|+|||+.+.
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999998764

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=5.1e-36  Score=226.32  Aligned_cols=75  Identities=56%  Similarity=1.006  Sum_probs=68.7

Q ss_pred             cceEEeecCCcccCCCCchhhhccceecCCCCCCCcccccCCCCCccccceeeecCCCCEEEEEEeeccCCCCCC
Q 026950          139 PRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSH  213 (230)
Q Consensus       139 prv~~kt~S~~~~~~DGy~WRKYGQK~IkGs~~PRsYYRCt~~gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH~ps~  213 (230)
                      .++++++.+++++++|||.|||||||.|||+++||+||||++.+|+|+|+|||+.+||.+++|||+|+|||+.+.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            467889999999999999999999999999999999999999999999999999999999999999999998763

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	3e-35

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (296), Expect = 3e-35
 Identities = 42/68 (61%), Positives = 53/68 (77%)

Query: 144 KTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTY 203
           +T S++D+LDDGY+WRKYGQKVVK   +PRSYY+CT   C V+K VER A DP+ V+TTY
Sbjct: 2   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61

Query: 204 EGRHVHSP 211
           EG+H H  
Sbjct: 62  EGKHNHDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3e-36  Score=222.57  Aligned_cols=70  Identities=60%  Similarity=1.109  Sum_probs=66.5

Q ss_pred             eecCCcccCCCCchhhhccceecCCCCCCCcccccCCCCCccccceeeecCCCCEEEEEEeeccCCCCCC
Q 026950          144 KTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSH  213 (230)
Q Consensus       144 kt~S~~~~~~DGy~WRKYGQK~IkGs~~PRsYYRCt~~gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH~ps~  213 (230)
                      ++.+++++++|||.|||||||.|+|+++||+||||++.||+|+|+|||+++||.+++|||+|+|||+.++
T Consensus         2 ~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           2 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            4667889999999999999999999999999999999999999999999999999999999999998764