Citrus Sinensis ID: 026970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMCAGTCNDILNCETWR
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEccccccHHHHHHHHHccccccccccccccccEEEEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccHHHHHHHHHHccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHccccccccEEEEEEEccccccccccccHccccHEHccccccccHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHcEEEEEEEccHHHccccccHHHHHHccccHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mggsaidddweltspsngerTVVLVGrtgngksatgnsilgrrafksrasssgvtstCEMQRTvlkdgqvvnvidtpglfdfsagsefvGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTggdeledndeTLEDylgrecpkplkkgatklrDQQFEvdslkgysKREISELKEQMHKSYEDQLKRITEMCAGTcndilncetwr
Flexible Loop (DISEMBL)
mggsaidddweltspsngertvvlvgrtgngksatgnsilgrrafksrasssgvtstcemqrtvlkdgqvvNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRecpkplkkgatklrdqqfevdslkgyskreISELKEQMHKSYEDQLKRITEMCAGTCNDILNCETWR
Low Complexity Region (SEG)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLvvfsvrsrfsQEEEAALHSLQTLFGKKIFDYMIVVFtggdeledndetledYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMCAGTCNDILNCETWR
Disordered region (IsUnstruct)
*********************************************************CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL**********************************************************LKRITEMCAGTCNDILNCET**
Disordered Region (DISOPRED)
*********************VVLVGRTGNGKSATGNSILGRRAFKS***********EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMCAGTCNDILNCE***
Disordered Region (DISEMBL)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF*************EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMCAGTCNDILNCETWR
Disordered Region (DISPRO)
*****************GERTVVLVGRTGNGKSAT****L*RRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMCAGTCNDILNCE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYEDQLKRITEMCAGTCNDILNCETWR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.708	0.461	0.597	1e-51
O81025	463	Putative protein PHLOEM P	no	no	0.660	0.328	0.539	3e-45
Q9NUV9	329	GTPase IMAP family member	yes	no	0.656	0.458	0.410	3e-28
Q8K3K9	310	GTPase IMAP family member	no	no	0.665	0.493	0.379	1e-22
Q8K349	305	GTPase IMAP family member	no	no	0.582	0.439	0.435	9e-22
Q99JY3	219	GTPase IMAP family member	no	no	0.613	0.643	0.383	3e-21
Q8NHV1	300	GTPase IMAP family member	no	no	0.595	0.456	0.368	2e-20
Q5FVN6	304	GTPase IMAP family member	no	no	0.582	0.440	0.421	4e-20
Q75N62	688	GTPase IMAP family member	no	no	0.630	0.210	0.389	2e-19
Q96F15	307	GTPase IMAP family member	no	no	0.647	0.485	0.333	8e-19

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/164 (59%), Positives = 120/164 (73%), Gaps = 1/164 (0%)

Query: 8   DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
           D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct: 32  DEFSASQPHPVE-NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query: 68  GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 127
           G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL+V SVR+R SQEEE  L +
Sbjct: 91  GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query: 128 LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
           LQ LFG KI DY+IVVFTGGD LED+  TLEDYLG   P  LK+
Sbjct: 151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKR 194

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 114/152 (75%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
           + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
            D     + +  EI+ C+ MA++GIHAVL+V S R R S+EEE+ +++LQ +FG +I DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
            IVVFTGGD+LE++D+TL+DY    CP+ L K
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTK 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 5/156 (3%)

Query: 15  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
           P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134
           DTPG+FD    +    KEI++CI +   G HA+L+V  +  R+++EE  A   +  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 KIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170
           +   +MI++FT  D+L D +  L DYL RE P+ ++
Sbjct: 144 RARSFMILIFTRKDDLGDTN--LHDYL-REAPEDIQ 176

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 5/158 (3%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+TGNSILGR+AF S   +  +T  CE   ++  DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCEKGVSIW-DGKELVVVDTPGIFD 91

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                    KEI +C+ +   G HA+L+V  +   ++ EE  A   L ++F KK   +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPLGC-YTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179
           ++ T  D+LED D  + +YL    P+ L++   + R++
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNR 185

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score =  103 bits (257), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 91/140 (65%), Gaps = 6/140 (4%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           ++LVG+TG+GKSATGNSILGR+AF+S+ S+  VT+T + + T   +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                E   K+I  C  +A  G HAVL+V  V  R++ E++A    LQ +FG  I  Y I
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTI 221

Query: 142 VVFTGGDELEDNDETLEDYL 161
           +VFT  ++L +   +LE+Y+
Sbjct: 222 LVFTRKEDLAEG--SLEEYI 239

Mus musculus (taxid: 10090)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 5/146 (3%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+TGNSILG + F S   +  +T  CE +R    DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFD 91

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                    +EI + + +   G HA+L+V  +  R++ EE  A   +  +FGK+   +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 142 VVFTGGDELEDNDETLEDYLGRECPK 167
           ++ T  D+LED D  + +YL  + PK
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPK 173

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 87/141 (61%), Gaps = 4/141 (2%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           +VLVG+TG+GKSAT N+ILG   F SR ++  VT  C+      + G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFD 69

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                +   KEI +CI  +  G HA+++V  +  R+++EE+  +  ++ +FGK    +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGDELEDNDETLEDYLG 162
           ++FT  +ELE   ++  D++ 
Sbjct: 129 ILFTRKEELE--GQSFHDFIA 147

Homo sapiens (taxid: 9606)

>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 6/140 (4%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           ++LVG+TG+GKSATGNSILGR+ F+S+ S+  VT   +     L +G+ + VIDTP +  
Sbjct: 105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILS 163

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
                E   K+I  C  +A  G HAVL+V  V  R++ E++ A   LQ +FG  I  Y I
Sbjct: 164 PQNQPEATAKKI--CDILASPGPHAVLLVIQV-GRYTTEDQEAARCLQEIFGNGILAYTI 220

Query: 142 VVFTGGDELEDNDETLEDYL 161
           +VFT  +EL +   +LE+Y+
Sbjct: 221 LVFTRKEELAEG--SLEEYI 238

Rattus norvegicus (taxid: 10116)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 9/154 (5%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           ++L+GR+G GKSATGN+ILGR AF S+  +  VTS+ +  +  L D Q V V+DTP    
Sbjct: 478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPSFIQ 536

Query: 82  FSAGSE----FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF 137
            + G+E     + +EI  C+ + ++G+   ++V  +  RF+QE+E  +  L+  F + I 
Sbjct: 537 -TPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENIM 594

Query: 138 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
            YMIV+FT  ++L D D  L DY      K LKK
Sbjct: 595 KYMIVLFTRKEDLGDGD--LHDYTNNTKNKALKK 626

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 95/156 (60%), Gaps = 7/156 (4%)

Query: 7   DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK 66
           +D+   T P+     ++LVG+TG GKSATGNSILG+  F+S+  +  VT TC++ +T   
Sbjct: 18  EDNLSATPPA---LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-KTGTW 73

Query: 67  DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 126
           +G+ V V+DTP +F+  A ++ + K I  C  ++  G H +L+V  +  RF+ ++  A+ 
Sbjct: 74  NGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVAIR 132

Query: 127 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162
            ++ +FG     +++++FT  ++L    + L+DY+ 
Sbjct: 133 KVKEVFGTGAMRHVVILFTHKEDL--GGQALDDYVA 166

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
296089429	345	unnamed protein product [Vitis vinifera]	0.939	0.626	0.660	1e-94
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.939	0.635	0.660	1e-94
224146305	335	predicted protein [Populus trichocarpa]	0.939	0.644	0.665	3e-94
255539412	339	aig1, putative [Ricinus communis] gi|223	0.939	0.637	0.656	1e-90
363814318	336	uncharacterized protein LOC100807910 [Gl	0.934	0.639	0.611	3e-83
147836179	566	hypothetical protein VITISV_037325 [Viti	0.765	0.310	0.840	3e-83
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.917	0.602	0.616	3e-83
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.956	0.639	0.577	3e-81
224136037	259	predicted protein [Populus trichocarpa]	0.882	0.783	0.637	4e-80
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.934	0.630	0.624	5e-79

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/271 (66%), Positives = 200/271 (73%), Gaps = 55/271 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+         
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 245

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMC 216
           L+GYSKREI  LKEQMHKSYE+QLKRITEM 
Sbjct: 246 LEGYSKREILVLKEQMHKSYEEQLKRITEMV 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/271 (66%), Positives = 200/271 (73%), Gaps = 55/271 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+         
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELKKGAQKLRDQTEEVDS 240

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMC 216
           L+GYSKREI  LKEQMHKSYE+QLKRITEM 
Sbjct: 241 LEGYSKREILVLKEQMHKSYEEQLKRITEMV 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 181/272 (66%), Positives = 201/272 (73%), Gaps = 56/272 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSA+DDDWE  SPSNG RT+VLVGRTGNGKSATGNSILGR+AFKSRASSSGVTS+CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRTVL+DGQ++NVIDTPGLFDFSAGSEFVG+EIVKCI MAKDGIHAVLVVFSVR+RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK---------- 170
           EEAAL SLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK          
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 171 -----------KGATKLRD----------------------------------QQFEVDS 185
                      KG  ++++                                  QQ EVDS
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240

Query: 186 LKG-YSKREISELKEQMHKSYEDQLKRITEMC 216
           LKG +S  EISEL+EQM + YEDQLKR+T+M 
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDMV 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 178/271 (65%), Positives = 196/271 (72%), Gaps = 55/271 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSAIDDDWELTSPSNG RTVVLVGRTGNGKSATGNS+LGR+AFKSRASSSGVTSTCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           Q+TV+ DGQV+NV+DTPGLFDFSA SEFVGKEIVKCI MAKDGIHAVLVVFSVR+RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGAT------ 174
           EEAAL SLQTLFG KIFDYMIVVFTGGDELEDNDETLEDYLGRECP+PL++  T      
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 175 -----------KLRDQQFEVDSL----------KGYSKREISELK--------------- 198
                      K  +Q  ++ SL          + Y+     ELK               
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240

Query: 199 -------------EQMHKSYEDQLKRITEMC 216
                        EQMH+SYE+QLKRITEM 
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEMV 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/270 (61%), Positives = 188/270 (69%), Gaps = 55/270 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+I DDWELTS SN  RTVVLVGRTGNGKSATGN+ILGR+ FKSRASSS V+++CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           Q T L DGQ+VNVIDTPGLFD S GSEFVGKEIVKCI +AKDGIHAV+VVFSVR+RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK--------- 171
           EE AL SLQTLFG KI DYMIVVFTGGDELE+N ETLEDYLGRECP+PLK+         
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 172 -------------------------------GATKLRDQQF---------------EVDS 185
                                          G     D+ F               EVDS
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEM 215
           LKGYSK EI + K+QM ++Y+DQLKRITE+
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836179|emb|CAN68778.1| hypothetical protein VITISV_037325 [Vitis vinifera]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 148/176 (84%), Positives = 165/176 (93%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL 176
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDE LEDYLGRECP+PLKKG   L
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDEXLEDYLGRECPEPLKKGQIFL 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/266 (61%), Positives = 188/266 (70%), Gaps = 55/266 (20%)

Query: 5   AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV 64
           +IDDDWELTS SN  RTVVLVGRTGNGKSATGN+ILGR+AFKSRASSS V+++CE++ T 
Sbjct: 19  SIDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTE 78

Query: 65  LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 124
           L +GQ+VNVIDTPGLFD SAGSEFVGKEIVKCI +AKDGIHAV+VVFSVR+RF++EEE A
Sbjct: 79  LNNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETA 138

Query: 125 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK------------- 171
           L SLQTLFG KI DYMIVVFTGGDELE+NDETLEDYLGRECP+PLK+             
Sbjct: 139 LRSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFD 198

Query: 172 ---------------------------GATKLRDQQF---------------EVDSLKGY 189
                                      G     D+ F               EVDSLKGY
Sbjct: 199 NKTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGY 258

Query: 190 SKREISELKEQMHKSYEDQLKRITEM 215
           SK EI E K+QM ++Y++QLKRITEM
Sbjct: 259 SKGEILEFKKQMQQTYDEQLKRITEM 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/277 (57%), Positives = 192/277 (69%), Gaps = 57/277 (20%)

Query: 1   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGSAI DDWE  +  NG RT+VLVGRTGNGKSATGNSILGR+AF+S +SS+GVTSTCE+
Sbjct: 6   MGGSAISDDWEFAA--NGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120
           QRTVL+DGQ+++VIDTPGLFDFSA  EF+G EIVKCI MAKDGIHAVLVV SVR+RFS+E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK---------- 170
           E+AA+ SL+  FG KI DYM++VFTGGD+LEDN+ETLEDYLGR+CP+PLK          
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183

Query: 171 -----------KGATKLR----------------------------------DQQFEVDS 185
                      K A +L+                                  +Q  EV++
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243

Query: 186 LKGYSKREISELKEQMHKSYEDQLKRITEMCAGTCND 222
           L GYSK+EI ELKEQM KSYE+QL+RITE+      D
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEVVESKLKD 280

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 165/259 (63%), Positives = 179/259 (69%), Gaps = 56/259 (21%)

Query: 13  TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVN 72
            SPSNG RTVVLVGRTGNGKSATGNSILG++AFKSRASSSGVTSTCE+Q TVL DGQ++N
Sbjct: 1   ASPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIIN 60

Query: 73  VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF 132
           VIDTPGLFDFSAGSEFVG+EIVKCI MAKDGIHAVLVVFSVR+RFSQEEEAAL SLQTLF
Sbjct: 61  VIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLF 120

Query: 133 GKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-----------------KGATK 175
           G KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK                 K   K
Sbjct: 121 GSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLFK 180

Query: 176 LRDQQFEVDSL----------KGYSKREISE----------------------------- 196
             +Q  E+ SL          + YS    +E                             
Sbjct: 181 RAEQMQELLSLVNRVIEQNAGQPYSDELFAEIQKGEMNFRDQQEEVNSLKGNISIREISE 240

Query: 197 LKEQMHKSYEDQLKRITEM 215
           LKEQM   YE+QLKR+TEM
Sbjct: 241 LKEQMQIQYEEQLKRVTEM 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 171/274 (62%), Positives = 193/274 (70%), Gaps = 59/274 (21%)

Query: 1   MGGSAIDDDWEL--TSPSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS 56
           MGGSAI++DWEL  TSP+NG   RTVVLVGRTGNGKSATGNSILGR+AFKSRA SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 116
           T E+Q TVL DGQ ++VIDTPG+FDFSAGS+FVGKEIVKCI MAKDGIHAVLVVFSVR+R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK------ 170
           FS EEEAAL SLQTLFG KI +YMIVVFTGGDELE+N+ETLEDYLGR CP PLK      
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180

Query: 171 ----------------------------------KGATKLRDQQF--------------- 181
                                              G     D+ F               
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240

Query: 182 EVDSLKGYSKREISELKEQMHKSYEDQLKRITEM 215
           EVDSL+GY+++E+ ELKEQMH+SY++QLKRITEM
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEM 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.739	0.497	0.567	3.3e-59
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.708	0.485	0.509	5.9e-42
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.708	0.461	0.493	1.7e-40
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.726	0.512	0.431	7.4e-40
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.834	0.617	0.434	1.3e-38
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.578	0.395	0.482	7.3e-38
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.891	0.520	0.400	9.2e-36
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.652	0.498	0.436	6.3e-35
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.821	0.565	0.380	3.2e-33
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.782	0.388	0.388	1.8e-32

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 97/171 (56%), Positives = 119/171 (69%)

Query:     1 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
             MGG  ++DDWE  S SN +RT+VLVGRTGNGKSATGNSILGR+AF+SRA + GVTSTCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQE 120
             QR V +DG ++NV+DTPGLFD S  ++F+GKEIV+CI +A+DGIHA+L          +E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVRRLA-EE 124

Query:   121 EEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKK 171
             E+  L  LQ LFG KI DYMIVVF               YL   CP+ LK+
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKE 175

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 83/163 (50%), Positives = 105/163 (64%)

Query:     8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
             D WEL S S   + VVLVGRTGNGKSATGNSI+GR+ F+S+  + GVT+ C+  R V  D
Sbjct:    24 DRWELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPD 83

Query:    68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHS 127
             G ++NVIDTPGLFD +  +EF+ KEIV C+ +A++G+HAV+          QEEE AL +
Sbjct:    84 GPIINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCT 143

Query:   128 LQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 170
             LQ LFG KI DY+IVVF               YL   CP+ LK
Sbjct:   144 LQMLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLK 186

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 81/164 (49%), Positives = 100/164 (60%)

Query:     8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 67
             D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct:    32 DEFSASQPHPVEN-IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query:    68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHS 127
             G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL          QEEE  L +
Sbjct:    91 GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query:   128 LQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKK 171
             LQ LFG KI DY+IVVF               YLG   P  LK+
Sbjct:   151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKR 194

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query:     4 SAIDDDWELTSPSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ 61
             + ++D  +L  PS  E  + +VLVGRTGNGKSATGNS++G++ F+S   ++GVT  CE  
Sbjct:     2 AGLEDTTDLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETC 61

Query:    62 RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEE 121
               V   G  +NVIDTPGLFD S  +E++ +EI+ C+ +A+DG+HAV+          QEE
Sbjct:    62 VAVTPCGTGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEE 121

Query:   122 EAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 170
             EA L++LQ +FG +I DY++V+F               YL + CP+ LK
Sbjct:   122 EATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLK 170

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 86/198 (43%), Positives = 120/198 (60%)

Query:    16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
             S     +VLVGRTGNGKSATGNS++G++ F S+A +SGVT  C+    V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
             TPGLFD S  +E++ KEIV+C+ +A+ GIHAVL          QEEE  L +LQ LFG +
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132

Query:   136 IFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREIS 195
             I DY++VVF               YLGR+CP  +K+      +++  +D+ K + +    
Sbjct:   133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDN-KTHDE---G 188

Query:   196 ELKEQMHK--SYEDQLKR 211
             +  EQ+HK  S  D ++R
Sbjct:   189 KKAEQVHKLLSLVDDIRR 206

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 67/139 (48%), Positives = 97/139 (69%)

Query:     6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL 65
             +++DW+   P   ERT+VL+GRTGNGKSATGNSILG+  F+S+A    +T  C++ ++ L
Sbjct:    10 VENDWK---P---ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAAL 125
              +G  +NVIDTPGLF  S+ ++F  +EIV+C+ +AK GI AVL          +EE++ L
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123

Query:   126 HSLQTLFGKKIFDYMIVVF 144
              +L+ LFG +I DY+IVVF
Sbjct:   124 RTLKILFGSQIVDYIIVVF 142

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 85/212 (40%), Positives = 126/212 (59%)

Query:     3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR 62
             GS ++   +L       RT++LVGR+GNGKSATGNSILGR+AFKS+  +SGVT+ CE+Q 
Sbjct:    31 GSGLEVTCDLRLEHKPARTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQS 90

Query:    63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEE 122
             + L +GQ++NVIDTPGLF  S  +EF  +EI++C  + K+GI AVL          +EE+
Sbjct:    91 STLPNGQIINVIDTPGLFSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEK 150

Query:   123 AALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFE 182
             +AL +L+ LFG KI DYMIVVF               YL  + P   K+      D++  
Sbjct:   151 SALFALKILFGSKIVDYMIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKV- 207

Query:   183 VDSLKGYSKREISELKEQMHK--SYEDQLKRI 212
                 +  S   +S+  +Q+ +  +Y +++ R+
Sbjct:   208 --LFRNRSNAPVSQKAKQVQELLNYVEEIARL 237

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 69/158 (43%), Positives = 94/158 (59%)

Query:    15 PSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVN 72
             PS  E  R +VLVG TGNGKS+TGNS++G+  F           TC+  +T+  DGQ++N
Sbjct:     7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKA-KTL--DGQIIN 60

Query:    73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLF 132
             VIDTPGLFD S  ++++ KEI+ C+ +   G+HAV+          +EEEAAL+ LQ LF
Sbjct:    61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120

Query:   133 GKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 170
             G KI DY++V+F               YL R CP+ LK
Sbjct:   121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLK 158

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 72/189 (38%), Positives = 107/189 (56%)

Query:    11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
             E  S     + +VLVGRTGNGKSATGNS++G+  F S A ++GVT TC+  + V   G  
Sbjct:     5 EQASAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSR 64

Query:    71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQT 130
             +NVIDTPGLFD S  +EF+ KEI+ C+ +A+ G+H V+          QEEE  L +LQ 
Sbjct:    65 INVIDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQV 124

Query:   131 LFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYS 190
             LFG +I DY+IV+F               Y  + CP  LK       D++   +++    
Sbjct:   125 LFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDK 184

Query:   191 KREISELKE 199
              +++ ++++
Sbjct:   185 HKKVEQVQQ 193

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 70/180 (38%), Positives = 105/180 (58%)

Query:    20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDY 139
              D     + +  EI+ C+ MA++GIHAVL          +EEE+ +++LQ +FG +I DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFXXXXXXXXXXXXXXXYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKE 199
              IVVF               Y    CP+ L K       ++   D+     K+++ ++K+
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021940001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (340 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam04548	211	pfam04548, AIG1, AIG1 family	4e-76
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	7e-70
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-12
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-10
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-07
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	3e-07
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	4e-07
cd00880	161	cd00880, Era_like, E	1e-06
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	6e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-04
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	0.001
pfam00735	280	pfam00735, Septin, Septin	0.002
TIGR00437	591	TIGR00437, feoB, ferrous iron transporter FeoB	0.002
PRK15494	339	PRK15494, era, GTPase Era; Provisional	0.002
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	0.002
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	0.003
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	0.004

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  228 bits (583), Expect = 4e-76
 Identities = 87/152 (57%), Positives = 116/152 (76%), Gaps = 4/152 (2%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             +VLVG+TGNGKSATGNSILGR+AF+S+  + GVT TC++      DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
           FD S  ++F+ KEI++C+ +A+ G HAVL+V S+  RF++EEE AL +LQ LFG KI DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
           MIVVFT  D+LED+   L+DYL   CP+ LK+
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLKE 148

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  212 bits (541), Expect = 7e-70
 Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 5/152 (3%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
             +VLVG+TGNGKSATGN+ILGR+ F+S+ S+SGVT TC+ +  V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139
           FD S   E + KEI++C+ ++  G HA L+V  +  RF++EEE A+  LQ LFG+K+ D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
            IV+FT GD+LE    +LEDYL   C   LK+
Sbjct: 119 TIVLFTRGDDLE--GGSLEDYLEDSCE-ALKR 147

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           T++++G+TG GKS+T NSI G R     A  S      E+ RTV  DG  +N+IDTPGL 
Sbjct: 33  TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIF 137
           +  +  + V ++I+  I   + K  I  VL V  +   R    +   L ++   FG  I+
Sbjct: 91  E--SQDQRVNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNLDVPLLRAITDSFGPSIW 148

Query: 138 DYMIVVFT 145
              IVV T
Sbjct: 149 RNAIVVLT 156

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 24/181 (13%)

Query: 23  VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV-VNVIDTPGLFD 81
           V+VGR G GKS+  N++LG       +   G T   ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  FSA-GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
           F   G E + + +++       G   +L+V     R S EE+A L  L+ L  + I   +
Sbjct: 60  FGGLGREELARLLLR-------GADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PI 109

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQ 200
           I+V    D L +  E  E     E  K L           FEV +  G     + EL E+
Sbjct: 110 ILVGNKID-LLEEREVEELLRLEELAKILGVPV-------FEVSAKTG---EGVDELFEK 158

Query: 201 M 201
           +
Sbjct: 159 L 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            V LVGR   GKS   N++ G +     +   G T   +    VL  G+ + ++DTPG  
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIV-SDYPGTTR--DPILGVLGLGRQIILVDTPG-L 56

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
              A      +   + +   ++    +L+V       ++++E  L  L+ L  K     +
Sbjct: 57  IEGASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKKP----I 111

Query: 141 IVVFT 145
           I+V  
Sbjct: 112 ILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 20/194 (10%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            + +VG    GKS   N++LG     +    +  T+   + R  L  G  V ++DTPGL 
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLPT--GVTPTTAVITVLRYGLLKG--VVLVDTPGLN 57

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
                   + +  +           AV+ V S     ++ E   L  +    GKKIF   
Sbjct: 58  STIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF--- 107

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDS---LKGYSKREISEL 197
             V    D L + +        RE    L+ G      + F V +   L+   + +   L
Sbjct: 108 -FVLNKIDLLSEEELEEVLEYSREELGVLELG--GGEPRIFPVSAKEALEARLQGDEELL 164

Query: 198 KEQMHKSYEDQLKR 211
           ++   +  E+ L+ 
Sbjct: 165 EQSGFEELEEHLEE 178

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 50.0 bits (119), Expect = 4e-07
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
            ++++G++G GKSAT NSI G   F + A   G TS  E++  V   G  + VIDTPGL
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL 176

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 23  VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82
            + GR   GKS+  N++LG+      +   G T     +   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIV-SPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83  SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142
                   +E  +      D    VL+V  V S  +  EE A   L    GK +    ++
Sbjct: 60  GGLGRERVEEARQVA----DRADLVLLV--VDSDLTPVEEEAKLGLLRERGKPV----LL 109

Query: 143 VFTGGDELEDNDE 155
           V    D + +++E
Sbjct: 110 VLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
          T++++G+ G GKS+T NSI+G R     A  S       + RT  + G  +N+IDTPGL 
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLI 97

Query: 81 D 81
          +
Sbjct: 98 E 98

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV-VNVIDTP 77
           E  +V+VG    GKS   N +LG +   +     G T                 N++DT 
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISIT-EYKPGTTRNYVTTVIEEDGKTYKFNLLDTA 59

Query: 78  GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVL 108
           G  D+ A      + +   + +  D +  VL
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVF-DIVILVL 89

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSR---ASSSGVTSTCEMQRT--VLKDGQV---VN 72
           +++VG +G GKS   N++ G + + S+   A    +T T E++ +   L++  V   + 
Sbjct: 6  NIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKLT 65

Query: 73 VIDTPGLFDF 82
          VIDTPG  D 
Sbjct: 66 VIDTPGFGDN 75

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 21 TVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQV---VN 72
          T+++VG +G GK+   N++        R     +     T   +     +++  V   + 
Sbjct: 6  TLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLT 65

Query: 73 VIDTPGLFDFS 83
          VIDTPG  D  
Sbjct: 66 VIDTPGFGDAI 76

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

>gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 28/184 (15%)

Query: 29  GN---GKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSA 84
           GN   GKS   N++ G     +  +  GVT   E +   L   G+ + ++D PG++  + 
Sbjct: 1   GNPNVGKSTLFNALTGANQ--TVGNWPGVT--VEKKEGKLGFQGEDIEIVDLPGIYSLTT 56

Query: 85  GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL-FGKKIFDYMIVV 143
            S    +E V    +  +    V+ V       S  E     +LQ L  G      MI+ 
Sbjct: 57  FS---LEEEVARDYLLNEKPDLVVNVVDA----SNLERNLYLTLQLLELGIP----MILA 105

Query: 144 FTGGDELED-----NDETLEDYLGRECPKPL---KKGATKLRDQQFEVDSLKGYSKREIS 195
               DE E      ++E LE+ LG           +G  +L+D   +   LK   KR I 
Sbjct: 106 LNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAIGLKELKKRAIE 165

Query: 196 ELKE 199
            + E
Sbjct: 166 IVPE 169

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV------LKDGQVVNVI 74
           +V ++GR  +GKS   N I+G +        S VT   +  R++      LKD QV+ + 
Sbjct: 54  SVCIIGRPNSGKSTLLNRIIGEKL-------SIVTPKVQTTRSIITGIITLKDTQVI-LY 105

Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 134
           DTPG+F+     E   K +V+C   +      VL++      F       L  L++L   
Sbjct: 106 DTPGIFEPKGSLE---KAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIV 162

Query: 135 KIF 137
            IF
Sbjct: 163 PIF 165

Length = 339

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVT-----STCEMQRTVLKDGQVVNV 73
             V +VGR   GKS   N + GRR   +  S   GVT        E        G+   +
Sbjct: 4   PVVAIVGRPNVGKSTLFNRLTGRR--IAIVSDTPGVTRDRIYGDAEWL------GREFIL 55

Query: 74  IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE 122
           IDT GL D     + + + I +   +A +    +L V   R   +  +E
Sbjct: 56  IDTGGLDDGDE--DELQELIREQALIAIEEADVILFVVDGREGITPADE 102

Length = 444

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 46/197 (23%), Positives = 72/197 (36%), Gaps = 40/197 (20%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTP 77
           + TV LVG    GK+   N++ G  A +   +  GVT   E +   LK  G  + ++D P
Sbjct: 3   KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVT--VEKKEGKLKYKGHEIEIVDLP 58

Query: 78  GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL-FGKKI 136
           G +  +A SE    E V    + +     ++ V  V +  +  E     +LQ L  G   
Sbjct: 59  GTYSLTAYSE---DEKVARDFLLEGKPDLIVNV--VDA--TNLERNLYLTLQLLELGIP- 110

Query: 137 FDYMIVVFTGGDELED-----NDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSK 191
              MI+     DE +      + E L   LG   P                V        
Sbjct: 111 ---MILALNMIDEAKKRGIRIDIEKLSKLLG--VP----------------VVPTVAKRG 149

Query: 192 REISELKEQMHKSYEDQ 208
             + ELK  + +  E +
Sbjct: 150 EGLEELKRAIIELAESK 166

Length = 653

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 33/142 (23%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           V+L+G TG GKS+  N++          S  GV +    +  +  DG+ + + DTPGL D
Sbjct: 42  VLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD 99

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHA------------VLVVFSVRSRFSQEEEAALHSLQ 129
                           G  KD  H             VL +     R    +E  L  + 
Sbjct: 100 ----------------GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVI 143

Query: 130 TLFGKKIFDYMIVVFTGGDELE 151
            L   K    ++ V T  D  E
Sbjct: 144 ILGLDK---RVLFVVTQADRAE 162

Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	100.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.91
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.88
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.87
COG1159	298	Era GTPase [General function prediction only]	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.84
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.82
COG1084	346	Predicted GTPase [General function prediction only	99.8
COG0218	200	Predicted GTPase [General function prediction only	99.79
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.79
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.78
PRK00089	292	era GTPase Era; Reviewed	99.78
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.77
PRK15494	339	era GTPase Era; Provisional	99.75
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.75
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.75
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.74
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.74
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.74
PRK12298	390	obgE GTPase CgtA; Reviewed	99.74
COG1160	444	Predicted GTPases [General function prediction onl	99.73
PRK12299	335	obgE GTPase CgtA; Reviewed	99.73
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.73
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.72
PRK03003	472	GTP-binding protein Der; Reviewed	99.72
PRK00093	435	GTP-binding protein Der; Reviewed	99.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.71
PRK00093	435	GTP-binding protein Der; Reviewed	99.71
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.71
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.7
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.7
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.7
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.7
PRK03003	472	GTP-binding protein Der; Reviewed	99.7
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.69
PRK12297	424	obgE GTPase CgtA; Reviewed	99.69
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.68
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.68
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.68
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.68
PRK11058	426	GTPase HflX; Provisional	99.67
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.67
COG3596	296	Predicted GTPase [General function prediction only	99.67
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.67
COG0486	454	ThdF Predicted GTPase [General function prediction	99.67
PRK12296	500	obgE GTPase CgtA; Reviewed	99.67
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.66
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.66
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.66
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.66
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.66
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.66
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.66
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.66
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.66
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.66
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.66
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.66
cd00881	189	GTP_translation_factor GTP translation factor fami	99.66
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.66
PRK04213	201	GTP-binding protein; Provisional	99.65
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.65
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.65
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.65
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.65
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.65
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.64
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.64
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.64
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.64
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.64
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.64
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.64
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.64
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.63
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.63
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.63
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.63
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.63
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.63
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.63
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.63
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.63
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.63
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.63
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.62
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.62
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.62
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.62
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.62
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.62
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.62
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.62
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.62
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.62
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.62
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.62
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.61
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.61
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.61
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.61
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.61
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.61
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.61
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.61
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.61
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.61
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.61
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.61
PLN03118	211	Rab family protein; Provisional	99.61
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.6
CHL00071	409	tufA elongation factor Tu	99.6
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.6
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.6
PRK05306	787	infB translation initiation factor IF-2; Validated	99.6
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.6
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.6
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.6
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.6
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.6
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.6
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.6
PLN03110	216	Rab GTPase; Provisional	99.6
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.6
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.6
PTZ00369	189	Ras-like protein; Provisional	99.6
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.6
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.6
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.6
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.59
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.59
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.59
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.59
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.59
PLN00223	181	ADP-ribosylation factor; Provisional	99.59
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.59
PTZ00133	182	ADP-ribosylation factor; Provisional	99.59
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.59
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.58
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.58
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.58
CHL00189	742	infB translation initiation factor 2; Provisional	99.58
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.58
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.58
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.58
COG2262	411	HflX GTPases [General function prediction only]	99.58
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.58
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.58
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.58
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.58
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.57
PRK12317	425	elongation factor 1-alpha; Reviewed	99.57
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.57
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.57
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.57
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.57
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.57
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.57
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.57
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.57
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.57
PLN03108	210	Rab family protein; Provisional	99.56
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.56
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.56
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.56
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.56
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.56
PRK12735	396	elongation factor Tu; Reviewed	99.55
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.55
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.55
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.55
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.55
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.55
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.55
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.55
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.55
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.55
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.55
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.54
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.54
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.54
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.54
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.54
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.54
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.53
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.53
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.53
PLN03127	447	Elongation factor Tu; Provisional	99.53
PLN00023	334	GTP-binding protein; Provisional	99.53
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.53
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.53
PRK00049	396	elongation factor Tu; Reviewed	99.53
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.53
PRK12736	394	elongation factor Tu; Reviewed	99.53
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.52
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.52
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.52
COG0536	369	Obg Predicted GTPase [General function prediction	99.52
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.52
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.52
PRK00007	693	elongation factor G; Reviewed	99.51
PLN03126	478	Elongation factor Tu; Provisional	99.51
KOG1145	683	consensus Mitochondrial translation initiation fac	99.51
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.5
PRK12739	691	elongation factor G; Reviewed	99.5
PRK10218	607	GTP-binding protein; Provisional	99.5
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.5
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.5
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.49
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.49
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.49
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.48
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.48
PRK04004	586	translation initiation factor IF-2; Validated	99.47
PRK09866	741	hypothetical protein; Provisional	99.47
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.47
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.47
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.46
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.46
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.46
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.46
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.46
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.46
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.46
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.46
COG2229	187	Predicted GTPase [General function prediction only	99.45
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.45
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.45
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.45
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.44
PRK13351	687	elongation factor G; Reviewed	99.44
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.44
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.41
PRK05433	600	GTP-binding protein LepA; Provisional	99.41
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.41
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.41
PTZ00141	446	elongation factor 1- alpha; Provisional	99.4
COG1100	219	GTPase SAR1 and related small G proteins [General	99.39
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.39
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.38
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.38
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.38
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.38
KOG0394	210	consensus Ras-related GTPase [General function pre	99.37
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.36
PTZ00416	836	elongation factor 2; Provisional	99.35
PTZ00258	390	GTP-binding protein; Provisional	99.35
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.34
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.34
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.33
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.32
PRK09601	364	GTP-binding protein YchF; Reviewed	99.32
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.32
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.3
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.28
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.27
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.27
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.26
PLN00043	447	elongation factor 1-alpha; Provisional	99.24
KOG0395	196	consensus Ras-related GTPase [General function pre	99.24
PRK07560	731	elongation factor EF-2; Reviewed	99.23
PRK12740	668	elongation factor G; Reviewed	99.22
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.21
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.21
COG1163	365	DRG Predicted GTPase [General function prediction	99.2
PRK09602	396	translation-associated GTPase; Reviewed	99.19
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.19
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.17
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.17
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.16
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.16
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.14
KOG2486	320	consensus Predicted GTPase [General function predi	99.14
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.11
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	99.11
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.1
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.09
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.09
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.08
KOG0090	238	consensus Signal recognition particle receptor, be	99.06
KOG0410	410	consensus Predicted GTP binding protein [General f	99.05
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.04
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.04
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.03
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.03
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.03
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.01
PRK13768	253	GTPase; Provisional	99.0
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.0
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.99
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.99
COG1162	301	Predicted GTPases [General function prediction onl	98.99
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.99
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.98
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.98
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.97
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.96
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.96
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.96
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.95
PRK12288	347	GTPase RsgA; Reviewed	98.93
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.92
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.92
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.92
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.91
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.91
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.9
PRK12289	352	GTPase RsgA; Reviewed	98.89
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.89
PRK14845	1049	translation initiation factor IF-2; Provisional	98.88
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	98.88
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.87
COG1161	322	Predicted GTPases [General function prediction onl	98.86
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.85
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.84
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.83
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.83
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.81
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.81
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.81
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.8
PRK00098	298	GTPase RsgA; Reviewed	98.8
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.79
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.79
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.79
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.79
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.78
PRK10416	318	signal recognition particle-docking protein FtsY;	98.77
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.75
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.73
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.72
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.66
PRK14974	336	cell division protein FtsY; Provisional	98.66
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.66
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.65
PRK13796	365	GTPase YqeH; Provisional	98.64
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.62
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.6
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.58
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.57
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.56
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.56
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.53
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.52
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.51
KOG0460	449	consensus Mitochondrial translation elongation fac	98.5
COG0488	530	Uup ATPase components of ABC transporters with dup	98.49
cd03112	158	CobW_like The function of this protein family is u	98.49
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.48
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.47
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.47
PTZ00099	176	rab6; Provisional	98.44
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.43
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.4
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.4
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.39
PRK10867	433	signal recognition particle protein; Provisional	98.38
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.38
KOG1673	205	consensus Ras GTPases [General function prediction	98.36
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.36
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.36
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.35
COG3523	1188	IcmF Type VI protein secretion system component Va	98.35
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.34
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.29
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.28
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.26
TIGR00959	428	ffh signal recognition particle protein. This mode	98.25
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.24
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.23
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.19
cd03114	148	ArgK-like The function of this protein family is u	98.19
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.17
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.17
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.16
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.15
PRK01889	356	GTPase RsgA; Reviewed	98.08
KOG2484	435	consensus GTPase [General function prediction only	98.07
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.06
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.05
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.04
KOG1533	290	consensus Predicted GTPase [General function predi	98.04
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.97
cd03246	173	ABCC_Protease_Secretion This family represents the	97.96
COG4988	559	CydD ABC-type transport system involved in cytochr	97.96
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.96
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.95
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.93
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.93
PF00004	132	AAA: ATPase family associated with various cellula	97.91
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.9
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.89
COG0488	530	Uup ATPase components of ABC transporters with dup	97.88
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	97.88
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.86
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.86
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.84
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.83
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.83
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.82
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.81
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.8
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.8
COG4559	259	ABC-type hemin transport system, ATPase component	97.78
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.78
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.77
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.77
cd03111	106	CpaE_like This protein family consists of proteins	97.77
KOG1143	591	consensus Predicted translation elongation factor	97.75
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.74
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.73
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.73
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.71
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.71
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.69
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.68
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.68
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.67
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.66
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.66
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.66
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.65
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.65
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.65
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.65
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.65
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.64
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.64
KOG0781	587	consensus Signal recognition particle receptor, al	97.63
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.63
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.63
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.63
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.63
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.63
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.62
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.62
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.61
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.61
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.61
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.61
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.6
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.6
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.6
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.59
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.59
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.59
PRK13695	174	putative NTPase; Provisional	97.59
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.59
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.59
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.59
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.59
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.59
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.58
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.58
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.58
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.58
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.58
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.58
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.58
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.57
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.57
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.57
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.57
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.57
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.57
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.57
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.56
PRK10908	222	cell division protein FtsE; Provisional	97.56
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.56
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.56
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.56
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.56
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.55
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.55
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.55
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.55
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.55
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.55
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.55
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.54
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.54
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.54
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.54
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.54
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.54
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.54
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.53
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.53
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.53
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.53
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.52
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.52
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.51
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.51

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=100.00  E-value=1e-31  Score=205.40  Aligned_cols=179  Identities=41%  Similarity=0.682  Sum_probs=142.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+|+|.+|+||||++|+|+|...+.+..+..++|..+....... +++.+.||||||+.++....+++..++.+++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            5899999999999999999999999888776777888888776654 899999999999999887778888999999999


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcccCCchhh---------
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK---------  170 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~---------  170 (230)
                      +.+++|++|||++.+ +++..+...++.+.+.||..++++++||+|++|.+.  +..+++|+++..+..|+         
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~--~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE--DDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT--TTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc--cccHHHHHhccCchhHhHHhhhcCCE
Confidence            999999999999999 999999999999999999999999999999999998  44576666643333333         


Q ss_pred             ----------------hhHHHHHhHHHHHHHcCC--CcHHHHHHHHHHHH
Q 026970          171 ----------------KGATKLRDQQFEVDSLKG--YSKREISELKEQMH  202 (230)
Q Consensus       171 ----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  202 (230)
                                      ....++.++++++..+++  |+++.++++++...
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~  206 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE  206 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence                            234466888999999988  99998888876654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.96  E-value=2.7e-28  Score=184.82  Aligned_cols=140  Identities=56%  Similarity=0.894  Sum_probs=122.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+|+|.+|+|||||+|+|+|...+.+.....+.|..+......+ .+..+.||||||+.++.........++..++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            4799999999999999999999988766655667888887776665 788999999999999876666777888888888


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (230)
                      +.+++|++|+|+++. +++..+...++.+.+.||...+.++++|+|++|.+.  +.++++|+..
T Consensus        80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~--~~~~~~~~~~  140 (196)
T cd01852          80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE--GGTLEDYLEN  140 (196)
T ss_pred             cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC--CCcHHHHHHh
Confidence            889999999999998 499999999999999999989999999999999997  5688888885

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.91  E-value=3.3e-23  Score=163.32  Aligned_cols=156  Identities=23%  Similarity=0.304  Sum_probs=112.9

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ......++|+++|.+|+||||++|+|+|...+..... .+.+......... .++..+.||||||+.+.....+.....+
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~i  110 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNII  110 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEE-ECCeEEEEEECCCCCchHHHHHHHHHHH
Confidence            3345668999999999999999999999876433221 1222332223233 3788999999999997533222222222


Q ss_pred             HHHHHhhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcccCCchhhhh
Q 026970           94 VKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKG  172 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~  172 (230)
                      ..++  ...++|++|||.+.+ .+++..+...++.+.+.||..++.++|+|+||+|..++++.++++|+.+ +++.++..
T Consensus       111 k~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~  187 (313)
T TIGR00991       111 KRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRV  187 (313)
T ss_pred             HHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHH
Confidence            2222  224789999997654 3788889999999999999999999999999999987778899999995 77776644


Q ss_pred             HH
Q 026970          173 AT  174 (230)
Q Consensus       173 ~~  174 (230)
                      ..
T Consensus       188 i~  189 (313)
T TIGR00991       188 IH  189 (313)
T ss_pred             HH
Confidence            43

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.88  E-value=1.8e-21  Score=165.03  Aligned_cols=152  Identities=22%  Similarity=0.306  Sum_probs=112.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+|+|.+|+|||||+|+|+|...+.+.....+ |......... .++..+.||||||+.++.... .....+.+++
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~-idG~~L~VIDTPGL~dt~~dq-~~neeILk~I  193 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGL-VQGVKIRVIDTPGLKSSASDQ-SKNEKILSSV  193 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEE-ECCceEEEEECCCCCccccch-HHHHHHHHHH
Confidence            346899999999999999999999987666443333 4333333233 267899999999999865432 2334444444


Q ss_pred             Hhhc--CCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh-----hhHHHHhcccCCchh
Q 026970           98 GMAK--DGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPL  169 (230)
Q Consensus        98 ~~~~--~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-----~~~~~~l~~~~~~~l  169 (230)
                      ..+.  .++|++|||+..+. +.+.++..+++.+.+.||..+|.++|||+|++|.+++++     .++++|+.. +...+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~L  272 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIV  272 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHH
Confidence            3332  36899999998752 333467789999999999999999999999999997543     689999984 77777


Q ss_pred             hhhH
Q 026970          170 KKGA  173 (230)
Q Consensus       170 ~~~~  173 (230)
                      +...
T Consensus       273 q~~I  276 (763)
T TIGR00993       273 QQAI  276 (763)
T ss_pred             HHHH
Confidence            7433

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.87  E-value=5.3e-21  Score=148.84  Aligned_cols=136  Identities=29%  Similarity=0.349  Sum_probs=99.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .....+|+|+|++|+|||||+|+|+|...+.... ..+.|.....+.... ++..+.||||||+.+...... ....+..
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~-~~~~~~~  104 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQR-VNRKILS  104 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHH-HHHHHHH
Confidence            3456899999999999999999999987654432 334455555554443 778999999999997643211 2222222


Q ss_pred             HHHhhc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970           96 CIGMAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (230)
Q Consensus        96 ~~~~~~--~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (230)
                      .+..+.  .++|+++||..++ .+++..+..+++.+.+.||..++.++++|+||+|...+++
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            222222  3678999998765 3788888999999999999999999999999999987553

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1159 Era GTPase [General function prediction only]

Probab=99.86  E-value=1.2e-20  Score=145.86  Aligned_cols=124  Identities=23%  Similarity=0.322  Sum_probs=103.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+++|+|+||||||+|.|+|.+.  +-.+..+.|+......+...+..++.|+||||+..+   ...+.+.+.+....
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~   81 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS   81 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence            5799999999999999999999998  444555656666666666667889999999999975   45566778888888


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ++..+|+++||+|+++.+...+...++.+++.     ..|+++++||.|...++
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~  130 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK  130 (298)
T ss_pred             HhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence            89999999999999977999998888888872     24899999999999743

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=1.3e-19  Score=147.54  Aligned_cols=141  Identities=24%  Similarity=0.250  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      +.|+++|+|+||||||+|+|+|.....+. ..+++|.+..+....+ .+..+.+|||+|+.+.  ..+.+...+......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence            68999999999999999999999875553 5778999999988887 6778999999999853  235567777777777


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcccCCchhh
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~  170 (230)
                      ....+|++|||+|+.+.+++.|....++|++.     .+|+++|+||+|.... ....-+|.+-.-.+.+.
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~-e~~~~efyslG~g~~~~  144 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKA-EELAYEFYSLGFGEPVP  144 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchh-hhhHHHHHhcCCCCceE
Confidence            78889999999999989999999999998853     3489999999998742 33445555533344433

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.82  E-value=6.8e-19  Score=122.18  Aligned_cols=116  Identities=22%  Similarity=0.293  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+|+|.+|+|||||+|+|++........ ..+.|....+..+.. ++..+.++||||+.+........ ..+...+...
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence            68999999999999999999875433332 345566664444443 77888999999998744222211 2333344444


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk  146 (230)
                       ..+|+++||+++..+.+..+..+++.+.      ...|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence             7789999999987544445566666663      23589999997

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=135.32  Aligned_cols=132  Identities=23%  Similarity=0.220  Sum_probs=95.4

Q ss_pred             CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 026970           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG   90 (230)
Q Consensus        11 ~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~   90 (230)
                      .++.-++..++|++.|.|+||||||+++|++.+.  .-.+.+.+|+...+.++.. ++.++++|||||+.|-..  ++.+
T Consensus       160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl--~ErN  234 (346)
T COG1084         160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPL--EERN  234 (346)
T ss_pred             cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCCh--HHhc
Confidence            4566667789999999999999999999999876  4445667788888887764 777999999999998543  2222


Q ss_pred             HHHHHHHHhhcCCccEEEEEEeCCC--CCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           91 KEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~d~~~--~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .-=.+++.....-.++|+|++|++.  .++-+. ..+++.++..|.    .|+++|+||+|...
T Consensus       235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~  294 (346)
T COG1084         235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD  294 (346)
T ss_pred             HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence            2112222222233478999999963  455444 566677777765    48999999999875

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=7.7e-18  Score=123.80  Aligned_cols=126  Identities=20%  Similarity=0.266  Sum_probs=94.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH---HHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE---FVGKE   92 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~---~~~~~   92 (230)
                      .+..+-|+++|+++||||||||+|++.....-....+|.|....++.+.    ..+.++|.||++-...+.+   .+...
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHH
Confidence            3455899999999999999999999976322233567788888777653    2378999999987655442   23333


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..++.... ...++++++|+...+...|.+.++++... +    .|+++|+||+|++.
T Consensus        97 i~~YL~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~~-~----i~~~vv~tK~DKi~  149 (200)
T COG0218          97 IEEYLEKRA-NLKGVVLLIDARHPPKDLDREMIEFLLEL-G----IPVIVVLTKADKLK  149 (200)
T ss_pred             HHHHHhhch-hheEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCeEEEEEccccCC
Confidence            344443332 36788999999878888899999998885 3    47999999999997

>TIGR00436 era GTP-binding protein Era

Probab=99.79  E-value=6.2e-18  Score=134.15  Aligned_cols=120  Identities=21%  Similarity=0.239  Sum_probs=81.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|++|||||||+|+|+|........ .+++|.. ....+....+..+.++||||+....   ......+.+.....
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~-~~~TTr~-~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSP-KAQTTRN-RISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCC-CCCcccC-cEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            68999999999999999999987532222 2233443 2333333355679999999997642   22334444555566


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..+|++++|+|+++..+.. ..++..+...     ..|+++|+||+|+..
T Consensus        77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-----~~p~ilV~NK~Dl~~  121 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-----KRPVVLTRNKLDNKF  121 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-----CCCEEEEEECeeCCC
Confidence            67889999999998554433 4444444432     348999999999874

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.78  E-value=2.3e-18  Score=123.92  Aligned_cols=120  Identities=24%  Similarity=0.303  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|.|++|||||+|+|+|......  ..+++|.......+.+ .+..+.++|+||.++......+  +.+.... .
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~--n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~-l   74 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVG--NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE--ERVARDY-L   74 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEE--ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH--HHHHHHH-H
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceec--CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH--HHHHHHH-H
Confidence            3799999999999999999999985433  3567788877776765 6799999999999876543321  2222211 1


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ....+|++++|+|++ .+. .+..++..+.+. |    .|+++|+||+|....
T Consensus        75 ~~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~  120 (156)
T PF02421_consen   75 LSEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-G----IPVVVVLNKMDEAER  120 (156)
T ss_dssp             HHTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-T----SSEEEEEETHHHHHH
T ss_pred             hhcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-C----CCEEEEEeCHHHHHH
Confidence            135789999999998 443 334455555553 3    489999999998864

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.78  E-value=1.3e-17  Score=133.95  Aligned_cols=122  Identities=21%  Similarity=0.298  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+++|++|||||||+|+|+|.......  ..+.|.......+....+..+.++||||+.+..   ....+.+......
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~   80 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS   80 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence            67999999999999999999998763332  222233333333332245789999999997643   2333445555556


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+|++++|+|+++.++..+...++.+...     ..|+++|+||+|+..
T Consensus        81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~  127 (292)
T PRK00089         81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVK  127 (292)
T ss_pred             HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCC
Confidence            67789999999999866776666666655531     348999999999984

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.77  E-value=4.7e-17  Score=121.52  Aligned_cols=126  Identities=18%  Similarity=0.284  Sum_probs=83.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....++|+++|.+|+|||||+|.|++...........+.|....++..   + ..+.+|||||+......... ...+..
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~~~   89 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKWQK   89 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHHHH
Confidence            356689999999999999999999987521111123344555544432   2 36899999998764332221 122222


Q ss_pred             HHH---hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~---~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+.   .....+|++++|+|++.+++..+...+..+...     ..|+++|+||+|+..
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~  143 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLK  143 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence            221   222356899999999878888877666655442     347999999999875

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK15494 era GTPase Era; Provisional

Probab=99.75  E-value=8.6e-17  Score=131.16  Aligned_cols=134  Identities=21%  Similarity=0.279  Sum_probs=89.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|||||||+|+|++........ ...+|.......+. .++..+.||||||+.+...   .+...+.+...
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~-k~~tTr~~~~~~~~-~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~  126 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTP-KVQTTRSIITGIIT-LKDTQVILYDTPGIFEPKG---SLEKAMVRCAW  126 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeeccC-CCCCccCcEEEEEE-eCCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence            3599999999999999999999987532222 23334433333333 3677899999999865322   23344444444


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                      ..+.++|++++|+|..+.++..+..++..+... +    .|.++|+||+|+.......+.+++.
T Consensus       127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~~~~~~~~~l~  185 (339)
T PRK15494        127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESKYLNDIKAFLT  185 (339)
T ss_pred             HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccccHHHHHHHHH
Confidence            556789999999999767777766666666543 2    3577899999986432233444443

>cd01898 Obg Obg subfamily

Probab=99.75  E-value=4.4e-17  Score=120.45  Aligned_cols=124  Identities=20%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      +|+++|.+|||||||+|+|.+......  ..++.|.......+.. .+. .+.++||||+.+.......+...+..    
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~--~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~----   74 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIA--DYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR----   74 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcccc--CCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence            589999999999999999998654111  1223344444444443 444 89999999986432221112222222    


Q ss_pred             hcCCccEEEEEEeCCCC-CCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSR-FSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~-~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+|++++|+|+++. -+.. ...+.+.+..........|+++|+||+|+..
T Consensus        75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  128 (170)
T cd01898          75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD  128 (170)
T ss_pred             HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence            23457999999999844 2222 2445555555422223468999999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.75  E-value=8.1e-17  Score=118.83  Aligned_cols=124  Identities=23%  Similarity=0.197  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+++|.+|+|||||+|+|++......  .....|.......... .+..+.+|||||+.+...........  ..+..
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~--~~~~~   75 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEM--QAITA   75 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHH--HHHHH
Confidence            5799999999999999999998764211  1223344444444433 56789999999986532211100000  11111


Q ss_pred             hcCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFS---QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+|++++|+|++++.+   .....++..+...+.   ..|+++|+||+|...
T Consensus        76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~  127 (168)
T cd01897          76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLT  127 (168)
T ss_pred             HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCc
Confidence            1223578999999975433   222445555555432   358999999999875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01894 EngA1 EngA1 subfamily

Probab=99.74  E-value=4.8e-17  Score=118.48  Aligned_cols=119  Identities=25%  Similarity=0.287  Sum_probs=83.9

Q ss_pred             EEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcC
Q 026970           23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD  102 (230)
Q Consensus        23 ~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (230)
                      +++|.+|+|||||+|+|++....... ...++|.......... .+..+.++||||+.+...   .....+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            47899999999999999987642222 2334455554544443 667899999999986432   233444444445567


Q ss_pred             CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          103 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       103 ~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+|++++|+|+.+..+..+.....++.+.     ..|+++|+||+|+..
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~  119 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIK  119 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence            78999999999766666666666666543     258999999999876

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=99.74  E-value=1.2e-16  Score=117.17  Aligned_cols=123  Identities=23%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|++|+|||||+|.+++......... ...+...... .....+..+.++||||+.++....   ...+.....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEE-EEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence            47899999999999999999999865332221 1222222222 222245789999999987643221   222333444


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+|++++|+|+.+..+.....+...+...     ..|+++|+||+|+..
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~  125 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK  125 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence            556788999999999866566666666655543     247999999999873

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01895 EngA2 EngA2 subfamily

Probab=99.74  E-value=2e-16  Score=116.96  Aligned_cols=126  Identities=19%  Similarity=0.192  Sum_probs=80.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV-KCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-~~~   97 (230)
                      +++|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.+|||||+.+........ +.+. ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~-e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGI-EKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccH-HHHHHHHH
Confidence            4789999999999999999999876432221 223333332233332 56778999999997653221111 1111 111


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ...+.++|++++|+|+.+..+.....++..+...     ..|+++|+||+|+...
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEE-----GKALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-----CCCEEEEEeccccCCc
Confidence            2344678999999999877766555544443331     2489999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=1.1e-16  Score=132.28  Aligned_cols=125  Identities=18%  Similarity=0.176  Sum_probs=84.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      -|+|+|.+|||||||+|+|++...  .....+.+|.......+...+...++|+||||+.........+...+.+.    
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~----  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH----  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence            799999999999999999998764  22234556767766666554456799999999986543333344444443    


Q ss_pred             cCCccEEEEEEeCCC---C-CCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRS---R-FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~---~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++++++|+|++.   . .......+++.+......-...|+++|+||+|+..
T Consensus       235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~  289 (390)
T PRK12298        235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD  289 (390)
T ss_pred             HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence            456689999999861   1 11222445555554322113458999999999875

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.73  E-value=1.2e-16  Score=130.52  Aligned_cols=137  Identities=23%  Similarity=0.309  Sum_probs=99.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK-EIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~-~~~~~   96 (230)
                      .+.+|+++|.|++|||||+|+|+|....... ...++|.+.-...+.+ +++.+.++||.|+-.-..-.+.+.. ...+.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            5699999999999999999999999864443 3556677766666665 8999999999998753221111000 00111


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                      + .....+|++++|+|++.+++..+......+.+. |    +++++|+||||+++.+....+++-+
T Consensus       255 ~-~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g----~~~vIvvNKWDl~~~~~~~~~~~k~  314 (444)
T COG1160         255 L-KAIERADVVLLVIDATEGISEQDLRIAGLIEEA-G----RGIVIVVNKWDLVEEDEATMEEFKK  314 (444)
T ss_pred             H-hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-C----CCeEEEEEccccCCchhhHHHHHHH
Confidence            1 223466899999999999999999999888886 3    3799999999999754355555433

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.73  E-value=2.4e-16  Score=127.84  Aligned_cols=126  Identities=19%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+|+|.++||||||+|+|++...  .....+.+|..+....+.+.++..++++||||+.+.......+...+.+.+  
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--  234 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--  234 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence            3689999999999999999998753  222334567777766665545678999999999864443333444444433  


Q ss_pred             hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ..++++++|+|+++.-+.++ ..+...+..........|+++|+||+|+..
T Consensus       235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~  285 (335)
T PRK12299        235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD  285 (335)
T ss_pred             --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence              45689999999984433333 344455554322123468999999999875

>cd01878 HflX HflX subfamily

Probab=99.73  E-value=2.9e-16  Score=119.69  Aligned_cols=128  Identities=25%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      +..++|+++|++|||||||+|+|++.......  ....|.......+.+.+...+.+|||||+.+..  .......+...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~~~~~~~~  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQLVEAFRST  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCC--CHHHHHHHHHH
Confidence            34479999999999999999999987642221  123344444444444344489999999986532  12222223333


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      + ..+..+|++++|+|++++...... .+.+.+... +. ...|+++|+||+|+..
T Consensus       115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~  167 (204)
T cd01878         115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLD  167 (204)
T ss_pred             H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCC
Confidence            2 234578999999999855544432 334444443 21 1358999999999976

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.72  E-value=2.8e-16  Score=114.32  Aligned_cols=120  Identities=26%  Similarity=0.265  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|++|+|||||+|++++....... ...+++.......... .+..+.++||||+.+......   .........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHHH
Confidence            58999999999999999999987642222 2334444444333443 567899999999976543211   111122224


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+..+|++++|+|++++.+..+...+..   .    ...|+++|+||+|+..
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~  121 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL---P----ADKPIIVVLNKSDLLP  121 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence            4567899999999986666555444433   1    2358999999999886

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.72  E-value=2e-16  Score=133.65  Aligned_cols=121  Identities=25%  Similarity=0.276  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|++|||||||+|+|++...... ...+++|.........+ .+..+.+|||||+...   ...+...+.......
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            489999999999999999998764222 23456677776666665 7788999999998642   233455566666667


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+|++++|+|+.++++..+..+.+++++.     ..|+++|+||+|...
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~  121 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK  121 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence            7888999999999878888888888887763     247999999999875

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=5.4e-16  Score=122.96  Aligned_cols=126  Identities=23%  Similarity=0.279  Sum_probs=81.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEe-eCC--eEEEEEeCCCCCCCCCCcHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFV   89 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~   89 (230)
                      ..+|+++|++|+|||||+|+|++.........      ....|.......... .++  ..+.||||||+++... ....
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~   82 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDC   82 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhh
Confidence            47999999999999999999999876443211      112233222222211 234  4699999999987643 2333


Q ss_pred             HHHHHHHHHhh------------------cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           90 GKEIVKCIGMA------------------KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        90 ~~~~~~~~~~~------------------~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ++.+..++...                  -..+|+++|+++.+. ++...+...++.+..      ..|+++|+||+|.+
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcC
Confidence            33333222111                  125799999998863 567777777776654      24799999999998


Q ss_pred             C
Q 026970          151 E  151 (230)
Q Consensus       151 ~  151 (230)
                      .
T Consensus       157 ~  157 (276)
T cd01850         157 T  157 (276)
T ss_pred             C
Confidence            6

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.72  E-value=3.8e-16  Score=127.65  Aligned_cols=127  Identities=24%  Similarity=0.182  Sum_probs=85.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..++|+++|.+|+|||||+|+|++......  ...++|.+.....+.+.++..+.++||||+....  .....+.+...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHH
Confidence            448999999999999999999999864222  2334565555555555467799999999985311  122333344433


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ..+..+|++++|+|++++...... .+...+... +. ...|+++|+||+|+..
T Consensus       264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~  315 (351)
T TIGR03156       264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLD  315 (351)
T ss_pred             -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCC
Confidence             245678999999999865544433 233444443 31 1358999999999875

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.72  E-value=3e-16  Score=133.63  Aligned_cols=125  Identities=25%  Similarity=0.224  Sum_probs=92.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      +..++|+++|.+|||||||+|+|++....... ..+++|.........+ .+..+.+|||||+...   ...+...+...
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~  110 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQ  110 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHH
Confidence            34579999999999999999999987643222 3455666666655554 6778999999998632   12234455555


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++|+|+|++++.+..+..+...+...     ..|+++|+||+|+..
T Consensus       111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~  160 (472)
T PRK03003        111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDER  160 (472)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCc
Confidence            55667788999999999888887777777776642     358999999999864

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.72  E-value=1.5e-15  Score=128.50  Aligned_cols=128  Identities=22%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.++||||+.......+.........
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            34689999999999999999999988643332 2344555544444443 678899999999876433322111111111


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+...+|++++|+|+.++.+..+..++..+.+. +    .|+++|+||+|+..
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~  298 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVD  298 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCC
Confidence            12345677999999999988888887777666553 2    47999999999874

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.71  E-value=2.2e-15  Score=127.32  Aligned_cols=126  Identities=21%  Similarity=0.221  Sum_probs=87.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.......+..........
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4479999999999999999999987643222 2344555544444443 6778999999998764432221111111111


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ..++..+|++++|+|+.++.+..+..++..+.+. +    .|+++|+||+|+.
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~  296 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccC
Confidence            2345678999999999988888887776665553 2    4899999999998

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.71  E-value=3.3e-16  Score=132.51  Aligned_cols=122  Identities=24%  Similarity=0.247  Sum_probs=92.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+++|.+|||||||+|+|++....... ...++|.........+ ++..+.+|||||+.+..   ......+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            58999999999999999999988643222 2455666666665554 67899999999998622   2244455555556


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++..+|++++|+|+.++++..+....+++.+.     ..|+++|+||+|...
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~  123 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD  123 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence            67788999999999878888887777777764     348999999999653

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.71  E-value=5.6e-16  Score=114.24  Aligned_cols=114  Identities=16%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      +.|+++|.+|+|||||+|+|++.....  ....++|...........  .+..+.++||||....           ....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~   67 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR   67 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence            469999999999999999999776422  222344544444444432  3678999999996431           1222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|+++.........+..+.. .    ..|+++|+||+|+..
T Consensus        68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~----~~p~ivv~NK~Dl~~  116 (168)
T cd01887          68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-A----NVPFIVALNKIDKPN  116 (168)
T ss_pred             HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEEceeccc
Confidence            234567899999999986555555555555443 2    247999999999874

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.70  E-value=5.7e-16  Score=125.53  Aligned_cols=126  Identities=21%  Similarity=0.212  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+|+|.++||||||+|+|++....  ....+.+|..+....+.+.+...+.++||||+.+.......+...+.+.+  
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--  233 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--  233 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence            46899999999999999999987532  12234456666666565534488999999999764433333444444443  


Q ss_pred             hcCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSR---FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        .+++++++|+|+++.   -...+ ..+.+.+..........|+++|+||+|+..
T Consensus       234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~  287 (329)
T TIGR02729       234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD  287 (329)
T ss_pred             --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence              456899999999743   11122 334444444322223468999999999875

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04171 SelB SelB subfamily

Probab=99.70  E-value=1e-15  Score=112.31  Aligned_cols=116  Identities=22%  Similarity=0.313  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .|+++|++|+|||||+|+|++...... .....++|....+....+..+..+.+|||||...           +...+..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~   70 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA   70 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence            689999999999999999997532111 1112344555555544442367899999999632           2233334


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+.++|++++|+|+++.........+..+.. .+   ..|+++|+||+|+..
T Consensus        71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~~  118 (164)
T cd04171          71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LG---IKRGLVVLTKADLVD  118 (164)
T ss_pred             hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hC---CCcEEEEEECccccC
Confidence            5668899999999975444444444443332 23   237999999999875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.70  E-value=5.2e-16  Score=122.92  Aligned_cols=133  Identities=23%  Similarity=0.288  Sum_probs=79.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEe-eCC--eEEEEEeCCCCCCCCCCcHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFV   89 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~   89 (230)
                      .++|+|+|.+|+|||||||+|++.........      ....+.......... .++  ..+.|+||||+++.. .....
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~   82 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC   82 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence            37999999999999999999999876444210      111122222222221 122  378899999998753 33333


Q ss_pred             HHHHHHHHHhhc-----------------CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           90 GKEIVKCIGMAK-----------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        90 ~~~~~~~~~~~~-----------------~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..+..++...+                 .++|++||+++++ .++.+.|...++.|.+.      .++|.|+.|+|.+.
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence            334433332221                 4679999999985 46888888887777665      37999999999997


Q ss_pred             CChhhHHHH
Q 026970          152 DNDETLEDY  160 (230)
Q Consensus       152 ~~~~~~~~~  160 (230)
                        ...+..+
T Consensus       157 --~~el~~~  163 (281)
T PF00735_consen  157 --PEELQAF  163 (281)
T ss_dssp             --HHHHHHH
T ss_pred             --HHHHHHH
Confidence              5554443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.70  E-value=2.4e-15  Score=113.81  Aligned_cols=125  Identities=18%  Similarity=0.294  Sum_probs=79.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      +..++|+++|.+|+|||||+|+|++...........+.|.......    .+..+.||||||+........ ....+...
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~~   96 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQKL   96 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHHH
Confidence            4558999999999999999999998652112122334454444332    246899999999875432221 12222222


Q ss_pred             HH---hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~---~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.   .....++++++|+|.+.+.+..+..+.+.+.. .    ..++++++||+|+..
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~----~~~~iiv~nK~Dl~~  149 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-Y----GIPVLIVLTKADKLK  149 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-c----CCcEEEEEECcccCC
Confidence            22   22234578888899876676665555555533 2    247899999999986

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=3.9e-15  Score=126.78  Aligned_cols=125  Identities=22%  Similarity=0.274  Sum_probs=85.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.......  ...+....+
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~  285 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL  285 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence            4589999999999999999999998643222 2345555544444443 67889999999985422111  111122221


Q ss_pred             --HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 --~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ..++..+|++++|+|++++.+..+..++..+...     ..|+++|+||+|+..
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~~  336 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-----GRALVLAFNKWDLVD  336 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence              1345688999999999988888777666655442     248999999999875

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.69  E-value=8.7e-16  Score=113.06  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|++|+|||||+|++++......  ..+..........+.. .....+.+|||||...           +.....
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence            3799999999999999999998865221  1121222222222222 1235788999999632           223334


Q ss_pred             hhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcc---cccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGK---KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~---~~~~~~ivv~tk~D~~~  151 (230)
                      ..+.++|++++|+|++++-+.. ...++..+.+....   ....|+++|+||+|+..
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  124 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK  124 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence            5567889999999998543322 24555556554432   13468999999999863

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.69  E-value=1.3e-15  Score=126.73  Aligned_cols=124  Identities=19%  Similarity=0.148  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      .|+|+|.++||||||+|+|++....  ....+.+|..+....+.+.++..++++||||+.........+...+.+.+   
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi---  234 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI---  234 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence            8999999999999999999987642  12345567777766666544778999999999764333333444444433   


Q ss_pred             cCCccEEEEEEeCCCC---CCH-HHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970          101 KDGIHAVLVVFSVRSR---FSQ-EEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~---~~~-~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                       .+++++++|+|+++.   -.. ....+.+.+..........|.++|+||+|+.
T Consensus       235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~  287 (424)
T PRK12297        235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP  287 (424)
T ss_pred             -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence             456899999999632   111 2234455555542222356899999999964

>cd01864 Rab19 Rab19 subfamily

Probab=99.68  E-value=2.9e-15  Score=110.25  Aligned_cols=118  Identities=12%  Similarity=0.135  Sum_probs=75.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .++|+++|++|+|||||++++.+.......  ............+.. ++  ..+.+|||||...           +...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~   68 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ--GNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI   68 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccC--CCccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence            479999999999999999999876542211  111222222233333 33  4788999999532           2233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ....+..+|++++|+|+++..+... ..++..+....  ....|+++|+||+|+...
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~  123 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQ  123 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccc
Confidence            3455677899999999985433222 45555555432  223589999999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04124 RabL2 RabL2 subfamily

Probab=99.68  E-value=1.6e-15  Score=111.31  Aligned_cols=113  Identities=19%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|+|||||++++++.......    ..+.....+  .... .....+.+|||||...           +...
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~   65 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ----LSTYALTLYKHNAKFEGKTILVDFWDTAGQER-----------FQTM   65 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCc----CCceeeEEEEEEEEECCEEEEEEEEeCCCchh-----------hhhh
Confidence            37999999999999999999876542211    112222221  1111 1234678999999643           2233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ...++.++|++++|+|++++.+... ..++..+.+..   ...|+++|+||+|+.
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~  117 (161)
T cd04124          66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD  117 (161)
T ss_pred             hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence            4456778899999999985544333 45555555432   135899999999974

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.68  E-value=1.3e-15  Score=114.91  Aligned_cols=117  Identities=18%  Similarity=0.240  Sum_probs=82.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      ..+|+++|+.++|||||+++|++.....              ......++|.......+.. ++..+.++||||+.+   
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~---   77 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD---   77 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence            3789999999999999999998641100              0111345666655555543 677899999999742   


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                              +...+......+|++++|+|+.......+...+..+... +.   +++++++||+|+..
T Consensus        78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~  132 (195)
T cd01884          78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVD  132 (195)
T ss_pred             --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCC
Confidence                    333334455678999999999877877777777776653 32   24789999999874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01866 Rab2 Rab2 subfamily

Probab=99.68  E-value=1.8e-15  Score=111.72  Aligned_cols=117  Identities=14%  Similarity=0.099  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|+|||||++++++.........  ..+.......+... ....+.+|||||..           .+.....
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~~   71 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDGKQIKLQIWDTAGQE-----------SFRSITR   71 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccceeEEEEEEEECCEEEEEEEEECCCcH-----------HHHHHHH
Confidence            7999999999999999999998764222221  11222211222221 22478899999942           2223344


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|++++.+... ..++..+.+...  ...|+++|+||.|+..
T Consensus        72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~  123 (168)
T cd01866          72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES  123 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence            56678899999999984333222 334444444321  2358999999999874

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PRK11058 GTPase HflX; Provisional

Probab=99.67  E-value=2.1e-15  Score=126.08  Aligned_cols=125  Identities=21%  Similarity=0.127  Sum_probs=83.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      +.|+++|.+|||||||+|+|++......  ...++|.+.....+.+.+...+.++||||+...  ........+...+ .
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl-~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL-Q  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH-H
Confidence            6899999999999999999999875422  233456655555555544458899999998542  1233334444443 3


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+|++++|+|++++....... +...+... +. ...|+++|+||+|+..
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~  323 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLD  323 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCC
Confidence            456889999999998654444432 23334433 22 1358999999999875

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.1e-15  Score=111.18  Aligned_cols=130  Identities=16%  Similarity=0.219  Sum_probs=91.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ..++|+|+|.+|||||.|+-++.+..+.....+.  +..+.....+.. ++  ..++||||.|.           ++++.
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sT--IGVDf~~rt~e~-~gk~iKlQIWDTAGQ-----------ERFrt   73 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYIST--IGVDFKIRTVEL-DGKTIKLQIWDTAGQ-----------ERFRT   73 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcce--eeeEEEEEEeee-cceEEEEEeeecccc-----------HHHhh
Confidence            3489999999999999999999988763332222  222333333333 33  47999999995           45667


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC---hhhHHHHhcc
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGR  163 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~  163 (230)
                      ....+|+++|+||+|+|++++-+.+. ..|+..+.+.....  .|.++|.||+|+.+..   .+..++|...
T Consensus        74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~  143 (205)
T KOG0084|consen   74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEEAQEFADE  143 (205)
T ss_pred             hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHHHHHHHHh
Confidence            77889999999999999986655544 56777777765443  4899999999987643   2334455543

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=3.3e-16  Score=119.88  Aligned_cols=128  Identities=23%  Similarity=0.213  Sum_probs=86.8

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+.+|+++|.||+|||||||+|++......  ..-+.+.....+.....++..+++|||||+++....+.+    .+.
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~----~r~  109 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE----HRQ  109 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHH----HHH
Confidence            34557888999999999999999996554222  212223322222222336688999999999985544333    334


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .+....+..|.+++++++.++.-.-+..++..+.-....   .++++++|.+|...+
T Consensus       110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p  163 (296)
T COG3596         110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP  163 (296)
T ss_pred             HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence            445556677899999999877666666666555554332   589999999998764

>cd01861 Rab6 Rab6 subfamily

Probab=99.67  E-value=3.6e-15  Score=109.15  Aligned_cols=115  Identities=14%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|++|+|||||++++++......  ..+..+.+.....+.. .+  ..+.+|||||...           +.....
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~   67 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP   67 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            799999999999999999998865322  1222333332333332 23  3688999999532           223334


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|++++-+... ..++..+....+.  ..|+++|+||+|...
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~  119 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD  119 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence            45678899999999975433222 3444444443222  358999999999854

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.6e-15  Score=124.32  Aligned_cols=125  Identities=26%  Similarity=0.310  Sum_probs=93.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+.+++++|+|+||||||+|+|++.+...+. ..+|+|.+.-...+.. +|.++.++||.|+-++...-+..  -+.++
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~i--GIeRs  290 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERI--GIERA  290 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHH--HHHHH
Confidence            35689999999999999999999999875443 4567788877777765 89999999999998755333332  12233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      . .....+|.+|||+|++...+..+...+..+      ....|+++|.||.|+..+
T Consensus       291 ~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~  339 (454)
T COG0486         291 K-KAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVSK  339 (454)
T ss_pred             H-HHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhcccc
Confidence            2 233577999999999866777776666611      123489999999999863

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.67  E-value=2.9e-15  Score=126.18  Aligned_cols=125  Identities=17%  Similarity=0.106  Sum_probs=81.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+|+|.++||||||+|+|++.....  ...+.+|..+....+.. .+..++|+||||+.+.......+...+.+.   
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrh---  233 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRH---  233 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHH---
Confidence            468999999999999999999876422  23455666666665554 567899999999976433333344444443   


Q ss_pred             hcCCccEEEEEEeCCCCC----CHHH-HHHHHHHHHHhc---------ccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRF----SQEE-EAALHSLQTLFG---------KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~----~~~~-~~~l~~l~~~~~---------~~~~~~~ivv~tk~D~~~  151 (230)
                       ...++++++|+|+++.-    ...+ ..+...|..+..         .....|+++|+||+|+..
T Consensus       234 -ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d  298 (500)
T PRK12296        234 -IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD  298 (500)
T ss_pred             -HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence             34568999999996311    1112 222333433321         123468999999999864

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.66  E-value=3.4e-15  Score=125.47  Aligned_cols=123  Identities=19%  Similarity=0.166  Sum_probs=82.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|++|+|||||+|+|++....... ..+++|.......+.+ ++..+.+|||||+.++....+.  ..+ ...
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~--~gi-~~~  276 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVER--LGI-EKS  276 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHH--HHH-HHH
Confidence            4579999999999999999999987542222 2345566555555554 7788999999998754311111  111 112


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++.+..+. ++..+..     ...|+++|+||+|+..
T Consensus       277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~  324 (442)
T TIGR00450       277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLKI  324 (442)
T ss_pred             HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence            2455678999999999867665544 4333322     1348999999999865

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.66  E-value=1.2e-15  Score=113.21  Aligned_cols=122  Identities=21%  Similarity=0.174  Sum_probs=74.0

Q ss_pred             EEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 026970           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  103 (230)
Q Consensus        24 liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (230)
                      ++|++|||||||+|+|++.... . ....++|............+..+.++||||+.+.....+.+...+.    ..+.+
T Consensus         1 iiG~~~~GKStll~~l~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~~   74 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK-V-ANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFL----AHIRR   74 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc-c-cCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHH----HHHhc
Confidence            5899999999999999998641 1 1223445555444444322788999999998643222221222222    23456


Q ss_pred             ccEEEEEEeCCCCC-----CH-HH-HHHHHHHHHHhcc-----cccceEEEEEeCCCCCC
Q 026970          104 IHAVLVVFSVRSRF-----SQ-EE-EAALHSLQTLFGK-----KIFDYMIVVFTGGDELE  151 (230)
Q Consensus       104 ~~~il~v~d~~~~~-----~~-~~-~~~l~~l~~~~~~-----~~~~~~ivv~tk~D~~~  151 (230)
                      +|++++|+|+.+..     .. .. ..+...+......     ....|+++|+||+|+..
T Consensus        75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~  134 (176)
T cd01881          75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD  134 (176)
T ss_pred             cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence            79999999997542     22 12 2233333322111     12468999999999876

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04109 Rab28 Rab28 subfamily

Probab=99.66  E-value=2.7e-15  Score=115.22  Aligned_cols=119  Identities=18%  Similarity=0.135  Sum_probs=75.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++.+++....  ....+..+.+.....+...+  ...+.+|||||...           +....
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~--~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~l~   67 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFG--KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGKML   67 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHHHH
Confidence            37899999999999999999977542  11112222222222233222  35788999999532           12334


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|+++.-+... ..++..+.+.... ....|+++|+||+|+..
T Consensus        68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~  123 (215)
T cd04109          68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH  123 (215)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence            455678999999999985433332 4456666665432 22347899999999864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04110 Rab35 Rab35 subfamily

Probab=99.66  E-value=6.2e-16  Score=117.39  Aligned_cols=117  Identities=18%  Similarity=0.171  Sum_probs=73.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..+|+++|++|+|||||++.+++......  ..+..........+... ....+.||||||...+           ....
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----------~~~~   72 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEINGERVKLQIWDTAGQERF-----------RTIT   72 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCccccceeEEEEEEECCEEEEEEEEeCCCchhH-----------HHHH
Confidence            58999999999999999999998754211  11111111112222221 1246889999995421           1233


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++..++++++|+|++++-+... ..++..+....   ...|+++|+||+|+..
T Consensus        73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~  124 (199)
T cd04110          73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPE  124 (199)
T ss_pred             HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence            455677899999999985433222 33444444432   2358999999999865

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.66  E-value=5.7e-15  Score=131.42  Aligned_cols=124  Identities=23%  Similarity=0.232  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..++|+++|.+|||||||+|+|++....... ..+++|.........+ .+..+.+|||||+....   ..+...+....
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~  348 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQA  348 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHH
Confidence            3478999999999999999999987642222 2456676665555554 67889999999986422   22444555666


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++..+|++++|+|+++.++..+..+.+.+...     ..|+++|+||+|...
T Consensus       349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~  397 (712)
T PRK09518        349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQA  397 (712)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccc
Confidence            6677789999999999878888887777777652     358999999999864

>cd01865 Rab3 Rab3 subfamily

Probab=99.66  E-value=4.3e-15  Score=109.38  Aligned_cols=117  Identities=12%  Similarity=0.052  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|+|||||++++++......  ..+..........+... ....+.+|||||...           +.....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence            5899999999999999999998764211  11111111211222211 124788999999542           222334


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++++|++++|+|.+++-+... ..++..+.+...  ...|+++|+||+|+..
T Consensus        69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~  120 (165)
T cd01865          69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMED  120 (165)
T ss_pred             HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCc
Confidence            56788999999999974422221 334444443321  2358999999999865

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.66  E-value=4.2e-15  Score=109.69  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=73.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..+|+++|++|+|||||++++++.......  .+..........+.... ...+.++||||...           +....
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-----------~~~~~   69 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSF--ISTIGIDFKIRTIELDGKKIKLQIWDTAGQER-----------FRTIT   69 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCccc--ccCccceEEEEEEEECCEEEEEEEEeCCchHH-----------HHHHH
Confidence            379999999999999999999987642211  11111222222222211 24688999999532           12233


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++-+... ..++..+.+...  ...|+++|+||+|+..
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~  122 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEE  122 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence            355678899999999975433222 344444444321  2358999999999874

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.66  E-value=2.3e-15  Score=114.01  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCc---cceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|++|+|||||+|+|+|......+....+   +|.....+  .......+.+|||||+.+.....+    .+...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPD----DYLEE   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee--ecCCCCCceEEeCCCCCcccCCHH----HHHHH
Confidence            6899999999999999999999654322211111   12222221  111235789999999986543322    22221


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ..+.++|++++|.+  .+++..+..+++.+.+. +    .++++|+||+|+..
T Consensus        76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~  121 (197)
T cd04104          76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDL  121 (197)
T ss_pred             --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchh
Confidence              23567788888753  37888888888888775 3    37899999999975

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04122 Rab14 Rab14 subfamily

Probab=99.66  E-value=5.1e-15  Score=109.11  Aligned_cols=114  Identities=16%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .+|+++|++|+|||||++++++......    ...|....+.  .+.. ++  ..+.+|||||...           +..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~   66 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRA   66 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC----CCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence            6899999999999999999997754211    1112222221  1222 33  3678999999532           223


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+.++|++++|+|++++-+... ..++..+.....  ...|+++|+||+|+..
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~  121 (166)
T cd04122          67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEA  121 (166)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence            33456678999999999985433222 334444433321  2358999999999865

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.66  E-value=1.4e-15  Score=114.44  Aligned_cols=117  Identities=21%  Similarity=0.324  Sum_probs=84.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCccceeeeeEEEE-eeCCeEEEEEeCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTV-LKDGQVVNVIDTPGLF   80 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~   80 (230)
                      +.++|+++|+.++|||||+++|++......                .....+.|......... ...+..++++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            347999999999999999999986542111                01123455555555554 1378899999999974


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      +           +...+......+|++++|+|+.+.+.......+..+... +    .|+++|+||+|+.
T Consensus        82 ~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~----~p~ivvlNK~D~~  135 (188)
T PF00009_consen   82 D-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-G----IPIIVVLNKMDLI  135 (188)
T ss_dssp             H-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS
T ss_pred             c-----------eeecccceecccccceeeeeccccccccccccccccccc-c----cceEEeeeeccch
Confidence            2           233344446678999999999878888888888777664 3    3699999999998

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04142 RRP22 RRP22 subfamily

Probab=99.66  E-value=4.9e-15  Score=112.24  Aligned_cols=126  Identities=16%  Similarity=0.125  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||++.+++......  ..+..+.......+.. ++  ..+.+|||||.........   .+.....
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~---~e~~~~~   74 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAG---QEWMDPR   74 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccch---hHHHHHH
Confidence            3799999999999999999998764221  1111111111122222 44  4678999999865432111   1112222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++-+... ..+.+.+.+... .....|+++|+||+|+..
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence            234578899999999985543332 334444544321 123458999999999864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04140 ARHI_like ARHI subfamily

Probab=99.66  E-value=2.8e-15  Score=110.36  Aligned_cols=119  Identities=23%  Similarity=0.192  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|.+|+|||||++++++...........+.+ ........ .....+.++||||...+.           .....
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCS-KNICTLQITDTTGSHQFP-----------AMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEEC-CEEEEEEEEECCCCCcch-----------HHHHH
Confidence            689999999999999999999876422211111111 11111111 123468899999976432           12224


Q ss_pred             hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ivv~tk~D~~~  151 (230)
                      .+..+|++++|+|++++-+... ..+++.+.+..+.. ...|+++|+||+|+..
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            4567899999999985544433 45566666654422 3458999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=2.2e-15  Score=119.01  Aligned_cols=116  Identities=17%  Similarity=0.241  Sum_probs=82.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccc----------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFK----------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      +|+++|++|+|||||+++|+......                ......++|.......+.+ .+..+.++||||+.++. 
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~-   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT-   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence            58999999999999999997432100                0112346677666666666 77899999999976421 


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                                .....++..+|++++|+|+.+.....+...+..+... +    .|+++++||+|+...+
T Consensus        79 ----------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a~  132 (270)
T cd01886          79 ----------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGAD  132 (270)
T ss_pred             ----------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCCC
Confidence                      2233455667999999999877877777777666543 2    4789999999987543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.66  E-value=2.4e-15  Score=112.87  Aligned_cols=114  Identities=19%  Similarity=0.180  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   86 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~   86 (230)
                      +|+++|.+|+|||||+|+|++.........              ..+.+.......... .+..+.++||||+.+.    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence            489999999999999999988765322110              122344444444443 4678999999997532    


Q ss_pred             HHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                             ......++..+|++++|+|+.+.........+..+..     ...|+++|+||+|+..
T Consensus        76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~  128 (189)
T cd00881          76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVG  128 (189)
T ss_pred             -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence                   1223334457799999999986666666665555544     2358999999999985

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04113 Rab4 Rab4 subfamily

Probab=99.66  E-value=3.8e-15  Score=109.12  Aligned_cols=117  Identities=16%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|++|+|||||++.|++.......  ....+.......+... ....+.+|||||...           +.....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~   67 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS--QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence            37999999999999999999987642221  1112222221222221 124688999999642           112233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++.+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~  119 (161)
T cd04113          68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLAD  119 (161)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcch
Confidence            45678899999999985443332 344444444322  2358999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK04213 GTP-binding protein; Provisional

Probab=99.65  E-value=9.3e-15  Score=111.09  Aligned_cols=122  Identities=22%  Similarity=0.201  Sum_probs=73.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH--
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK--   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~--   95 (230)
                      ..++|+++|.+|+|||||+|+|++.... .. ..+++|.....  +.. .  .+.+|||||++..........+.+..  
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRKPNH--YDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeCceE--Eee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4579999999999999999999987632 21 22344443322  222 2  68999999986543322222233333  


Q ss_pred             --HHHhhcCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 --CIGMAKDGIHAVLVVFSVRSRFS-----------QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 --~~~~~~~~~~~il~v~d~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ++......++++++|+|.++...           ..+..++..+..     ...|+++|+||+|+..
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~  144 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIK  144 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccC
Confidence              22223345688999999863211           112233333332     1348999999999865

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.65  E-value=2.3e-15  Score=110.88  Aligned_cols=117  Identities=13%  Similarity=0.062  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccccc--CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|++|+|||||+|.|++.......  ......|.......+.+ ++..+.+|||||....           .....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESL-----------RSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHH
Confidence            4899999999999999999875321111  11222344444444444 5789999999997532           12333


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ..+.++|++++|+|+++.-+  ......++...+..  ....|+++|+||+|+..
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~  121 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRER--FEESKSALEKVLRNEALEGVPLLILANKQDLPD  121 (167)
T ss_pred             HHhCCCCEEEEEEECchHHH--HHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence            45678899999999874321  11222233332221  12358999999999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.65  E-value=6.5e-15  Score=111.35  Aligned_cols=115  Identities=17%  Similarity=0.257  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCc-cccccC-------------CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (230)
                      ++|+++|.+|+|||||+++|++.. .+....             ...+.|.......+.. .+..+.+|||||..+    
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~----   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD----   77 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence            689999999999999999998631 111110             1123344444344443 567899999999753    


Q ss_pred             cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                             +......++.++|++++|+|+++........++..+..     ...|+++|+||+|+..
T Consensus        78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~  131 (194)
T cd01891          78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-----LGLKPIVVINKIDRPD  131 (194)
T ss_pred             -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence                   22334455678899999999986554444444443322     1347999999999864

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01868 Rab11_like Rab11-like

Probab=99.65  E-value=8.6e-15  Score=107.67  Aligned_cols=116  Identities=20%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|++|||||||++++++......  ..+..+.......+.. .+  ..+.++||||...           +....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~   69 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence            6899999999999999999998764211  1222222222222332 33  3688999999532           22333


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..++++++|+|+++..+... ..++..+.+....  ..|+++|+||+|+..
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~  122 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRH  122 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            445677899999999974433322 3444444443221  358999999999864

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04157 Arl6 Arl6 subfamily

Probab=99.65  E-value=3.8e-15  Score=109.14  Aligned_cols=116  Identities=15%  Similarity=0.089  Sum_probs=72.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+|||||||++++++...+....   ..|.......+. ..+..+.++||||....           ......+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~---~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQII---VPTVGFNVESFE-KGNLSFTAFDMSGQGKY-----------RGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCccee---cCccccceEEEE-ECCEEEEEEECCCCHhh-----------HHHHHHH
Confidence            48999999999999999999864322111   112222222222 25678999999996531           2233345


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ivv~tk~D~~~  151 (230)
                      +.++|++++|+|++++.+... ..++..+.+... .....|+++|+||+|+..
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~  118 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD  118 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence            678899999999985543222 233333333211 112458999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.65  E-value=4.8e-15  Score=113.21  Aligned_cols=115  Identities=14%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccccc-----------------------------CCCCccceeeeeEEEEeeCCeEE
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDGQVV   71 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   71 (230)
                      +|+++|++|+|||||+++|++.......                             ....++|.......+.+ ++..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            5899999999999999999865432110                             01245666665555554 67899


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .++||||+.+           +...+......+|++++|+|+.......+......+.. .+   .+++++|+||+|+..
T Consensus        80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~---~~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LG---IRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC---CCcEEEEEEchhccc
Confidence            9999999632           22223334567899999999986665555544444433 23   235788999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.64  E-value=5.6e-15  Score=112.33  Aligned_cols=116  Identities=14%  Similarity=0.056  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeee--eEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .+|+++|.+|||||||++++++......    ...|....  ...+...  ....+.+|||||...+           ..
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-----------~~   65 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-----------GG   65 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-----------hh
Confidence            3799999999999999999998654211    11233222  2223321  2346889999996432           23


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEeCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~  150 (230)
                      .....+.++|++++|+|++++.+... ..++..+.....  .....|+++|+||+|+.
T Consensus        66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            33456788999999999985443333 334444444322  12345899999999986

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.64  E-value=6.8e-15  Score=108.38  Aligned_cols=117  Identities=17%  Similarity=0.160  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|++|+|||||++++++......  ...+.+.......+... ....+.+|||||...           +.....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~   69 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-----------FRTITS   69 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEECCCcHh-----------HHHHHH
Confidence            6899999999999999999997754221  11222222222223221 124688999999532           223334


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++.+|++++|+|++++-+... ..++..+.+...  ...|+++|+||+|+..
T Consensus        70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~  121 (166)
T cd01869          70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTD  121 (166)
T ss_pred             HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhccc
Confidence            55678899999999975332222 334444444321  2358999999999764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.64  E-value=7e-15  Score=107.93  Aligned_cols=117  Identities=24%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||++++++......   ..+.+.......... ++  ..+.+|||||..+..           ..
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~   66 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD---YDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFS-----------AM   66 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcc---cCCCccceEEEEEEE-CCEEEEEEEEECCCCcchh-----------HH
Confidence            37999999999999999999997654211   111111111111222 33  467899999975422           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|+++.-+... ..++..+.+... ....|+++|+||+|+..
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~  121 (164)
T cd04145          67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH  121 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence            3345567899999999985433222 334444444322 22458999999999864

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04154 Arl2 Arl2 subfamily

Probab=99.64  E-value=1e-14  Score=108.28  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .....+|+++|++|+|||||++++++......     ..|.......+.. ++..+.+|||||...           +..
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~   73 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRP   73 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHH
Confidence            34458999999999999999999998743111     1122222333333 567899999999642           122


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....++..+|++++|+|++++-+... ..++..+... ......|+++|+||+|+..
T Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~  129 (173)
T cd04154          74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPG  129 (173)
T ss_pred             HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECccccc
Confidence            33445678899999999975422221 2222222211 1112458999999999865

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04120 Rab12 Rab12 subfamily

Probab=99.64  E-value=8.6e-15  Score=111.04  Aligned_cols=115  Identities=15%  Similarity=0.193  Sum_probs=75.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .|+++|..|||||||++.++...+..  .....++.......+.. ++  ..+.+|||+|...           +.....
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence            68999999999999999998765421  11121222222222333 33  5788999999643           223345


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .++.++|++++|+|++++-+... ..++..+.+...  ...|+++|+||+|+..
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~  119 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET  119 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence            67789999999999986654444 345555554422  2358999999999864

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.64  E-value=1e-14  Score=116.06  Aligned_cols=128  Identities=25%  Similarity=0.347  Sum_probs=87.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----CCC--CccceeeeeEEEEee-CC--eEEEEEeCCCCCCCCCCcH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSE   87 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----~~~--~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~   87 (230)
                      +-.++|+++|++|.|||||+|+|++.......    ...  ...|........... ++  ..++++|||||++.... .
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s   99 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-S   99 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-c
Confidence            55689999999999999999999988542221    111  122333333332221 33  37889999999986433 3


Q ss_pred             HHHHHHHHHHHhh------------------cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           88 FVGKEIVKCIGMA------------------KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        88 ~~~~~~~~~~~~~------------------~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      ..+.-+..++...                  -.++|++||++.++ +.+.+.+...++.+.+.+      ++|.|+.|+|
T Consensus       100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD  173 (373)
T COG5019         100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKAD  173 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeeeeccc
Confidence            3344443333221                  14689999999874 578888888888887764      7999999999


Q ss_pred             CCC
Q 026970          149 ELE  151 (230)
Q Consensus       149 ~~~  151 (230)
                      .+.
T Consensus       174 ~lT  176 (373)
T COG5019         174 TLT  176 (373)
T ss_pred             cCC
Confidence            987

>cd04136 Rap_like Rap-like subfamily

Probab=99.64  E-value=8.2e-15  Score=107.46  Aligned_cols=116  Identities=18%  Similarity=0.190  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||++++++......   ..+++.......+.. ++  ..+.+|||||...+.           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEK---YDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT-----------AMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc---cCCchhhhEEEEEEE-CCEEEEEEEEECCCccccc-----------hHH
Confidence            6899999999999999999997654211   111111111111222 33  457789999975432           222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+.++|++++|+|+++.-+... ..++..+.+... ....|+++|+||+|+..
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  120 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED  120 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            345677899999999975433332 344455554322 22458999999999864

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.64  E-value=6.1e-15  Score=107.55  Aligned_cols=115  Identities=23%  Similarity=0.283  Sum_probs=73.9

Q ss_pred             EEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 026970           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  103 (230)
Q Consensus        24 liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (230)
                      |+|.+|+|||||+|++++......  ...++|.......+.+ ++..+.+|||||+.+......  ...+....... .+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence            589999999999999998763222  2344555555555554 567899999999876543221  11222221111 58


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       104 ~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +|++++|+|+.+ .. ....+...+.+.     ..|+++|+||+|+..
T Consensus        75 ~d~vi~v~d~~~-~~-~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~  115 (158)
T cd01879          75 PDLIVNVVDATN-LE-RNLYLTLQLLEL-----GLPVVVALNMIDEAE  115 (158)
T ss_pred             CcEEEEEeeCCc-ch-hHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence            899999999974 22 222333333331     358999999999875

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.63  E-value=6.1e-15  Score=114.56  Aligned_cols=116  Identities=18%  Similarity=0.239  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      +|+++|+.|+|||||+++|+........                ....+.|.......+.+ .+..+.++||||+.++. 
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~-   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI-   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence            5899999999999999999864321100                01223344444555554 67899999999987532 


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                                .....++..+|++++|+|+.+........+++.+.+. +    .|+++++||+|+...+
T Consensus        79 ----------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a~  132 (237)
T cd04168          79 ----------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGAD  132 (237)
T ss_pred             ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccCCC
Confidence                      2223344567999999999877776666666665543 2    4789999999987543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.63  E-value=7.1e-15  Score=124.11  Aligned_cols=122  Identities=25%  Similarity=0.292  Sum_probs=80.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|.+|+|||||+|+|++....... ...++|.+.....+.. ++..+.++||||+.++....+.  ..+... 
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~ie~--~gi~~~-  288 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDEVEK--IGIERS-  288 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccHHHH--HHHHHH-
Confidence            3479999999999999999999987642222 2344555554444444 6788999999998753211111  011222 


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++.+..+...+.   .    ....|+++|+||+|+..
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~---~----~~~~piiiV~NK~DL~~  335 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILE---E----LKDKPVIVVLNKADLTG  335 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHH---h----cCCCCcEEEEEhhhccc
Confidence            23456789999999998666655433332   2    12358999999999875

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.63  E-value=1.9e-14  Score=105.59  Aligned_cols=116  Identities=19%  Similarity=0.206  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|++|+|||||++++++......  .....+.......+.. ++  ..+.+|||||...           +....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence            3799999999999999999998765211  1122222222222332 33  4788999999532           22333


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|+.+.-+... ..++..+.....  ...|+++|+||+|...
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~  119 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED  119 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence            445677899999999974333322 234444444322  2458999999999765

Rab GTPases are implicated in vesicle trafficking.

>cd04127 Rab27A Rab27a subfamily

Probab=99.63  E-value=1.4e-14  Score=108.08  Aligned_cols=119  Identities=14%  Similarity=0.046  Sum_probs=73.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-----------CCeEEEEEeCCCCCCCCCCcH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSE   87 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtPG~~~~~~~~~   87 (230)
                      ..+|+++|++|+|||||++++++......  ..+.+........+...           ....+.+|||||..       
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------   74 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------   74 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------
Confidence            37999999999999999999987754221  11111111111111111           12578899999942       


Q ss_pred             HHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           88 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          .+.......+.++|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+..
T Consensus        75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~  134 (180)
T cd04127          75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLED  134 (180)
T ss_pred             ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchh
Confidence                233444556678999999999985433222 344444444311 12358999999999864

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.63  E-value=1.3e-14  Score=106.71  Aligned_cols=112  Identities=15%  Similarity=0.159  Sum_probs=71.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (230)
                      |+++|.+|||||||++.+++......    ...|.......+.. .+..+.+|||||...+.           .....++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~----~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~~-----------~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLES----VVPTTGFNSVAIPT-QDAIMELLEIGGSQNLR-----------KYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCccc----ccccCCcceEEEee-CCeEEEEEECCCCcchh-----------HHHHHHH
Confidence            78999999999999999997754211    11122222223332 56789999999975422           2233456


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +++|++++|+|.+++.+...  ...++.+........|+++|+||.|+..
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~  113 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPA  113 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence            78899999999975432221  2223333322223568999999999865

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01863 Rab18 Rab18 subfamily

Probab=99.63  E-value=7.3e-15  Score=107.58  Aligned_cols=117  Identities=18%  Similarity=0.156  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|++|+|||||+++|++.......  .+..+.......+... ....+.++||||....           .....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~   67 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDL--AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccc--CCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence            37999999999999999999987642211  1111222222222221 2357899999996431           12223


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ..++.+|++++|+|.++..+... ..++..+.+.. .....|+++|+||+|+.
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCccc
Confidence            45578899999999975443332 33445555543 23345799999999987

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00154 Rab Rab family

Probab=99.63  E-value=1.1e-14  Score=105.85  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE--EEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|++|+|||||+|.+++.......    ..|....+..  +... ....+.++|+||...           +...
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~   65 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY----KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI   65 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCcc----CCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence            37999999999999999999988653321    1122222222  2211 235788999999632           2233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ....+..+|++++|+|++++-+... ..++..+.....  ...|+++|+||+|..
T Consensus        66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~  118 (159)
T cd00154          66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE  118 (159)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence            4455677899999999974322222 334444444321  235899999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04121 Rab40 Rab40 subfamily

Probab=99.63  E-value=3.6e-14  Score=106.64  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=77.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|..|||||||+.++......  .......+.......+.. ++  ..+.+|||||...           +..
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~   70 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT   70 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence            3479999999999999999999875431  111111222222222222 33  5788999999643           223


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....++.++|++++|+|++++.+... ..+++.+.+.. .  ..|+++|+||.|+..
T Consensus        71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~  124 (189)
T cd04121          71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAF  124 (189)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchh
Confidence            34456688999999999986655444 45666665543 2  458999999999854

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.63  E-value=1.2e-14  Score=125.81  Aligned_cols=127  Identities=19%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+++|+++|++++|||||+++|.+......  ..+++|.......+.+.++..+.||||||+.++.           ..
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~~  151 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------SM  151 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchh-----------hH
Confidence            3458999999999999999999998765322  2345666666665555344489999999986532           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHh
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  161 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l  161 (230)
                      ....+..+|++++|+++++.........+..+...     ..|+++++||+|+...+...+.+.+
T Consensus       152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~-----~vPiIVviNKiDl~~~~~e~v~~~L  211 (587)
T TIGR00487       152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA-----NVPIIVAINKIDKPEANPDRVKQEL  211 (587)
T ss_pred             HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcccccCCHHHHHHHH
Confidence            23456678999999999877666665555443331     2479999999998643333333333

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.63  E-value=6.1e-15  Score=108.77  Aligned_cols=114  Identities=22%  Similarity=0.148  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|||||||+++++......    ....|....+......   ....+.+|||||...+...           
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------   65 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL-----------   65 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC----CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc-----------
Confidence            379999999999999999998654311    1122333333222211   2347889999997543211           


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|+++..+... ..++..+.+..+   ..|+++|+||+|+..
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~  118 (166)
T cd00877          66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKD  118 (166)
T ss_pred             cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhccc
Confidence            1234567899999999985433332 345555555433   458999999999863

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.63  E-value=1.6e-14  Score=105.95  Aligned_cols=118  Identities=19%  Similarity=0.119  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|++|+|||||+|++++...........+.+.......+. .....+.+|||||...           +......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~-----------~~~~~~~   69 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQER-----------YRSLAPM   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHH-----------HHHHHHH
Confidence            689999999999999999999887532111111111111111111 1234788999999532           2222334


Q ss_pred             hcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+.++|++++|+|+++.-+.. ...++..+.....  ...|+++|+||+|...
T Consensus        70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~  120 (163)
T cd01860          70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES  120 (163)
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence            566789999999997432222 2444455555432  2357999999999764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04144 Ras2 Ras2 subfamily

Probab=99.62  E-value=6.1e-15  Score=111.16  Aligned_cols=116  Identities=20%  Similarity=0.225  Sum_probs=71.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|.+|||||||++++++......  .. +++.......... ++.  .+.+|||||...+           .....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~--~~-~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVET--YD-PTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEY-----------TALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc--CC-CchHhhEEEEEEE-CCEEEEEEEEECCCchhh-----------HHHHH
Confidence            489999999999999999986654111  11 1111111111222 333  5789999996432           12233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~  151 (230)
                      .++.++|++++|+|+++..+... ..++..+...... ....|+++|+||+|+..
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~  120 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY  120 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence            45677899999999985443333 4555555554321 13458999999999864

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.62  E-value=1.1e-14  Score=106.55  Aligned_cols=115  Identities=22%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|+|||||+|++++.......  . + |....+ ..... ++  ..+.+|||||....           ...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~--~-~-t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~l   65 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY--D-P-TIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SAM   65 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCc--C-C-cchheEEEEEEE-CCEEEEEEEEECCCCcch-----------HHH
Confidence            58999999999999999999987542111  1 1 211111 11222 33  35778999996432           123


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++++|++.+++-+... ..++..+.+... ....|+++|+||+|+..
T Consensus        66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~  120 (162)
T cd04138          66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA  120 (162)
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            3345567899999999975433222 234444444322 22458999999999864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.62  E-value=2.1e-14  Score=105.99  Aligned_cols=113  Identities=17%  Similarity=0.118  Sum_probs=71.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+|||||||++.+.+..  ....   ..|.......+.. .+..+.++||||...           +......+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~---~~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEI--PKKV---APTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC--Cccc---cCcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence            47999999999999999999762  1211   1122222223333 567899999999532           22333456


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..+|+++||+|+++..+... ..++..+.+.. .....|+++|+||.|+..
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~  114 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKN  114 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcC
Confidence            788899999999985432222 23333333211 112458999999999865

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.62  E-value=3.2e-14  Score=104.56  Aligned_cols=120  Identities=22%  Similarity=0.301  Sum_probs=75.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH---
Q 026970           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG---   98 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~---   98 (230)
                      |+++|.+|+|||||+|.|++...........+.|......  .  ....+.++||||+....... .....+...+.   
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--N--VNDKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYL   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--E--ccCeEEEecCCCccccccCH-HHHHHHHHHHHHHH
Confidence            7999999999999999999543322222222334333322  2  23388999999987654321 11122222222   


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....++++++++|.+............++... +    .|+++|+||+|...
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~  124 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLK  124 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCC
Confidence            233456788999998755556656666666553 2    47999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.62  E-value=6.5e-14  Score=124.70  Aligned_cols=125  Identities=22%  Similarity=0.240  Sum_probs=85.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..++|+++|.+|||||||+|+|++....... ...++|.......+.+ ++..+.+|||||+........  ..+....+
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~--~~e~~~~~  524 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLT--GAEYYSSL  524 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccch--hHHHHHHH
Confidence            3489999999999999999999998642222 2344555544333443 677899999999864222111  11222221


Q ss_pred             --HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 --~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ..++..+|++++|+|++++.+..+..++..+.+.     ..|+++|+||+|+..
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~  575 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-----GRALVLVFNKWDLMD  575 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence              2345778999999999888888877666655442     248999999999875

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.62  E-value=1.2e-14  Score=106.74  Aligned_cols=116  Identities=18%  Similarity=0.164  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      +|+++|++|||||||++++++.......  . +++........... ....+.+|||||.....           .....
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~--~-~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------~~~~~   67 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDY--D-PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-----------AMRDQ   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCccc--C-CchhhhEEEEEEECCEEEEEEEEECCCcccch-----------HHHHH
Confidence            7999999999999999999987642211  1 11111111112221 12467899999976432           22223


Q ss_pred             hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+..+|++++|+|++++-+... ..+...+.+.... ...|+++|+||+|+..
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~  119 (164)
T smart00173       68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES  119 (164)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            4567799999999985433222 3334444443221 2458999999999864

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04158 ARD1 ARD1 subfamily

Probab=99.62  E-value=1.5e-14  Score=106.96  Aligned_cols=112  Identities=15%  Similarity=0.079  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+|||||||++++.+...  ..   ...|....+..+.. .+..+.++||||.....           ......
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~---~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~-----------~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF--MQ---PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLR-----------PLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC--CC---cCCcCceeEEEEEE-CCEEEEEEECCCChhcc-----------hHHHHH
Confidence            589999999999999999998643  11   12233333333333 56789999999975422           223345


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      +.++|+++||+|++++-+..  ....++...+..  ....|+++|+||+|+..
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  114 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKELRDALLLIFANKQDVAG  114 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence            67789999999997542221  122333333221  12258999999999864

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04149 Arf6 Arf6 subfamily

Probab=99.62  E-value=3.7e-14  Score=104.78  Aligned_cols=114  Identities=15%  Similarity=0.146  Sum_probs=73.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|+|||||++++.......  . .  .|....+..+.. .+..+.+|||||...           +.....
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~--~-~--~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~   71 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVT--T-I--PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR   71 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCcc--c-c--CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence            4799999999999999999998654311  1 1  122222222332 567899999999642           223334


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      .++.++|++++|+|+++..+..  ....++.+.+...  ...|+++|+||+|+..
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRID--EARQELHRIINDREMRDALLLVFANKQDLPD  124 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhHH--HHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence            5677899999999998543222  2223333333211  2358999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01893 Miro1 Miro1 subfamily

Probab=99.62  E-value=1.1e-14  Score=107.41  Aligned_cols=114  Identities=18%  Similarity=0.151  Sum_probs=71.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+|||||||++++++......   ....................+.+|||||.....           ......
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~~   67 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR-----------ANLAAE   67 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceEeeeeecCCeEEEEEEeCCCchhhh-----------HHHhhh
Confidence            789999999999999999998764221   111111111111111134578899999975321           112233


Q ss_pred             cCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..+|++++|+|++++.+...  ..++..+.... .  ..|+++|+||+|+.+
T Consensus        68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~  117 (166)
T cd01893          68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRD  117 (166)
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccc
Confidence            467899999999975444333  24555555532 2  458999999999875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01890 LepA LepA subfamily

Probab=99.62  E-value=9.8e-15  Score=108.82  Aligned_cols=116  Identities=19%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccc------cC-------CCCccceeeeeEEEEe----eCCeEEEEEeCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKS------RA-------SSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~------~~-------~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~   82 (230)
                      ++|+++|++|+|||||+++|++......      ..       ...+++.........+    ..+..+.+|||||+.++
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            4799999999999999999987431100      00       0112233222222211    13457889999998642


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                                 ......++.++|++++|+|+++..+..+...+..+..     ...|+++|+||+|+..
T Consensus        81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~  133 (179)
T cd01890          81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPS  133 (179)
T ss_pred             -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCc
Confidence                       1223345567899999999986665555443333222     1247999999999754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04112 Rab26 Rab26 subfamily

Probab=99.62  E-value=2.2e-14  Score=108.16  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++.+++....... .............+.. ++  ..+.||||||...           +....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~   67 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGN-FIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQER-----------FRSVT   67 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccC-cCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHhh
Confidence            37999999999999999999877542111 1111111111111221 22  4788999999422           22233


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++.+... ..++..+.+....  ..|+++|+||+|+..
T Consensus        68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~  120 (191)
T cd04112          68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSG  120 (191)
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchh
Confidence            445678899999999985433322 4455566554322  358999999999864

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.62  E-value=1.3e-14  Score=111.73  Aligned_cols=117  Identities=16%  Similarity=0.062  Sum_probs=76.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE--EEee-CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ....+|+++|.+|||||||+++++.......    ...|....+..  +... ....+.+|||||...+.          
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------   76 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----------   76 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCc----cCCccceeEEEEEEEECCeEEEEEEEECCCchhhh----------
Confidence            4558999999999999999999876543111    11222222221  2211 23588999999975432          


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       .....++.++|++|+|+|.+++.+... ..|+..+.+..   ...|+++|+||+|+..
T Consensus        77 -~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~  131 (219)
T PLN03071         77 -GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN  131 (219)
T ss_pred             -hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhh
Confidence             222345678899999999986544333 35555555542   2358999999999753

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.61  E-value=1.9e-14  Score=106.54  Aligned_cols=119  Identities=17%  Similarity=0.140  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|++|+|||||++++++......  .............+... ....+.+|||||...+.       .   ....
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~---~~~~   70 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPER--TEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR-------K---SMVQ   70 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCc--cccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH-------H---hhHH
Confidence            6899999999999999999987654211  11111111111222221 12578899999954211       1   1233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|++++-+... ..++..+.... .....|+++|+||+|+..
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~  123 (170)
T cd04115          71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE  123 (170)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence            45678899999999985544333 34444444432 223458999999999864

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.61  E-value=2.1e-14  Score=106.55  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|+|||||++.+.+......    ...|....+. .+.. ++  ..+.+|||||...+           ...
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l   66 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDY----HDPTIEDAYKQQARI-DNEPALLDILDTAGQAEF-----------TAM   66 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCC----cCCcccceEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHH
Confidence            6899999999999999999987654211    1112221111 2222 33  46889999996532           233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++++|+|++++.+... ..+...+.+.. .....|+++|+||+|+..
T Consensus        67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~  121 (172)
T cd04141          67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLES  121 (172)
T ss_pred             hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhh
Confidence            3455678899999999986666554 33444555432 223458999999999754

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.61  E-value=1.7e-14  Score=107.35  Aligned_cols=114  Identities=14%  Similarity=0.108  Sum_probs=73.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|+|||||++.+.......     ...|....+..... ....+.+|||||...           +.....
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~   75 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR   75 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence            4899999999999999999996443211     11233333333333 567899999999643           223344


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      .++.++|++++|+|++++.+..  ...+++...+...  ...|+++|+||.|+..
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~  128 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPD  128 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence            5678899999999998543222  2223333332211  2358999999999864

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04125 RabA_like RabA-like subfamily

Probab=99.61  E-value=9.3e-15  Score=109.93  Aligned_cols=117  Identities=18%  Similarity=0.181  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|||||||++++++......  .............+... ....+.+|||||...           +.....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~-----------~~~~~~   67 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSES--TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER-----------FRSLNN   67 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-----------HHhhHH
Confidence            3799999999999999999998765221  11111222222222221 124678999999542           122334


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+.++|++++|+|++++-+... ..++..+......  ..|+++|+||+|+..
T Consensus        68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~  119 (188)
T cd04125          68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVN  119 (188)
T ss_pred             HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcc
Confidence            56678899999999985433222 3344444443222  258999999999874

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.61  E-value=2.5e-14  Score=104.79  Aligned_cols=113  Identities=23%  Similarity=0.177  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      +|+++|.+|+|||||++++++......  ..  .|....+  ..+..   .....+.+|||||...           +..
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~   66 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKD--YK--KTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDA   66 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC--CC--CcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHH
Confidence            799999999999999999998654211  11  1222222  12222   1235789999999432           223


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+++.+|++++|++++++-+... ..++..+....   ...|+++|+||+|+..
T Consensus        67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~  120 (162)
T cd04106          67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD  120 (162)
T ss_pred             hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence            33456678899999999974432222 33333343322   2358999999999875

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01862 Rab7 Rab7 subfamily

Probab=99.61  E-value=1.7e-14  Score=106.67  Aligned_cols=118  Identities=16%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|++|+|||||+|++++.......  ............+.. .+  ..+.+|||||....           ....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~   66 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVTV-DDKLVTLQIWDTAGQERF-----------QSLG   66 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCccceEEEEEEEEE-CCEEEEEEEEeCCChHHH-----------HhHH
Confidence            37999999999999999999987642211  111111111122222 23  35679999996421           1223


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ...+.++|++++|+|+.++.+... ..+...+...+..  ....|+++|+||+|+..
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            345677899999999975433222 2333333333221  12458999999999974

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04175 Rap1 Rap1 subgroup

Probab=99.61  E-value=1.5e-14  Score=106.27  Aligned_cols=116  Identities=16%  Similarity=0.162  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||+++++..... ..  ..+ |....+ ..+... ....+.+|||||...+.           ...
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~-~~--~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFV-EK--YDP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-----------AMR   66 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCC-cc--cCC-cchheEEEEEEECCEEEEEEEEECCCcccch-----------hHH
Confidence            58999999999999999999865431 11  111 221111 122221 13456799999975322           233


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+.++|++++|+|.++.-+... ..++..+.+... ....|+++|+||+|+..
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  120 (164)
T cd04175          67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED  120 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence            345677899999999874433332 344454544321 23458999999999864

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.61  E-value=2.3e-14  Score=104.83  Aligned_cols=113  Identities=13%  Similarity=0.079  Sum_probs=70.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+|+|||||++++++......     ..|....+..+.......+.++||||...           +.......
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            489999999999999999998765221     11222222333333456899999999642           12233345


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      +..+|++++|+|+++..+...  ...++.+.+..  ....|+++|+||+|+..
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  115 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPG  115 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence            667899999999975432221  22222222211  12458999999999854

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.61  E-value=3.3e-14  Score=105.65  Aligned_cols=114  Identities=16%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|+|||||++.+++......     ..|....+..... ++..+.++||||...           +.....
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~   77 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN   77 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence            47999999999999999999987654211     1233333333333 567899999999742           223334


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      .++.++|++++|+|++++-+..  .....+.+.+...  ...|+++++||+|+..
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~~--~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERLP--LTKEELYKMLAHEDLRKAVLLVLANKQDLKG  130 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence            5567889999999998542211  1122233322211  2358999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.61  E-value=6.1e-14  Score=105.16  Aligned_cols=116  Identities=9%  Similarity=0.055  Sum_probs=73.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|||||||++.+.+......     ..|.......+.. .+..+.++||||...           ....
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~   77 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL   77 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            4458999999999999999999998753211     1122222333333 567899999999642           1233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ...++.++|++++|+|+++.-..  ......+.+.+..  ....|+++|+||+|+..
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~  132 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLILGNKIDAPY  132 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence            34566789999999999743111  1122223332221  12358999999999753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.61  E-value=2.4e-14  Score=105.12  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCccceeeee--EEEEe--eCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEM--QRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      .+|+++|.+|||||||++++.+.. .+...   ...|....+  ..+..  .....+.+|||||..           .+.
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~   66 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYS   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHH
Confidence            379999999999999999998542 22111   112222211  11222  133688999999942           122


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|+++..+... ..++..+....   ...|+++|+||+|+..
T Consensus        67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~  121 (164)
T cd04101          67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD  121 (164)
T ss_pred             HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence            333455678899999999985433222 34444444432   2358999999999865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04169 RF3 RF3 subfamily

Probab=99.61  E-value=2.3e-14  Score=113.18  Aligned_cols=117  Identities=17%  Similarity=0.199  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccC--------------------CCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (230)
                      ++|+++|+.|+|||||+++|+.........                    ...+.+.......+.+ .+..+.+|||||.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~   81 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH   81 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence            789999999999999999998543211100                    0123333344445554 6789999999997


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      .++.           ......+..+|++++|+|+++........+++.....     ..|+++++||+|....+
T Consensus        82 ~df~-----------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~~a~  139 (267)
T cd04169          82 EDFS-----------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-----GIPIITFINKLDREGRD  139 (267)
T ss_pred             hHHH-----------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-----CCCEEEEEECCccCCCC
Confidence            6432           1122334567999999999877765555555444331     24799999999986543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PLN03118 Rab family protein; Provisional

Probab=99.61  E-value=3.6e-14  Score=108.71  Aligned_cols=121  Identities=13%  Similarity=0.139  Sum_probs=73.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      .....+|+++|.+|+|||||+++|++...  ... .+..........+...+ ...+.||||||...+.           
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-----------   76 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--EDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR-----------   76 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCC--CCc-CCCceeEEEEEEEEECCEEEEEEEEECCCchhhH-----------
Confidence            34458999999999999999999998754  111 11112222222233211 2478899999965421           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHH-H-HHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEE-A-ALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~-~-~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|.+++-+.... . +...+.. +......++++|+||+|+..
T Consensus        77 ~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~  134 (211)
T PLN03118         77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRES  134 (211)
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccc
Confidence            2233456778999999999854333322 1 2222322 22222347899999999864

>cd04123 Rab21 Rab21 subfamily

Probab=99.60  E-value=3.3e-14  Score=103.98  Aligned_cols=117  Identities=14%  Similarity=0.084  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|+|||||+|++++......  .....+.......+... ....+.+|||||...           +.....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence            3799999999999999999998764221  11111122212222221 223688999999532           112223


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|+++.-+... ..+++.+......  ..|+++|+||+|...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~  119 (162)
T cd04123          68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER  119 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            34567899999999975433222 3444445544332  458999999999874

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>CHL00071 tufA elongation factor Tu

Probab=99.60  E-value=1.8e-14  Score=120.65  Aligned_cols=120  Identities=15%  Similarity=0.215  Sum_probs=84.0

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc--------------cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (230)
                      ..+..+|+++|++++|||||+++|++......              .....++|.......+.. ++..+.|+||||+. 
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~-   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA-   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH-
Confidence            34558999999999999999999997532110              111245666655444443 56789999999963 


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                                .+...+......+|++++|+|+...+...+...+..+... +.   +++++++||+|+..
T Consensus        87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~~  142 (409)
T CHL00071         87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQVD  142 (409)
T ss_pred             ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCCC
Confidence                      2233333445678999999999877877777777766543 42   24788999999975

>cd04111 Rab39 Rab39 subfamily

Probab=99.60  E-value=2.1e-14  Score=109.91  Aligned_cols=119  Identities=18%  Similarity=0.115  Sum_probs=73.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||++.+++......  ..+.+........+....+  ..+.+|||||...           +...
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~   68 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI   68 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence            37899999999999999999998764221  1121222221112222122  4788999999532           1223


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++-+... ..++..+.+.... ...++++|+||+|+..
T Consensus        69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~  123 (211)
T cd04111          69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES  123 (211)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence            3355678899999999985433332 3444444443322 2346889999999865

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04131 Rnd Rnd subfamily

Probab=99.60  E-value=1.6e-14  Score=107.72  Aligned_cols=114  Identities=15%  Similarity=0.074  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++.+.+......    ...|....+. .+... ....+.+|||||...+.           ...
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~-----------~~~   66 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPET----YVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD-----------NVR   66 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCC----cCCceEEEEEEEEEECCEEEEEEEEECCCchhhh-----------hcc
Confidence            5899999999999999999997754211    1112222221 12221 22468899999964321           223


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+++++|++++|+|++++-+...  ..|+..+.+...   ..|+++|+||+|+..
T Consensus        67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~  119 (178)
T cd04131          67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRT  119 (178)
T ss_pred             hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhc
Confidence            356788999999999986655554  356666666532   358999999999753

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.60  E-value=2.5e-14  Score=126.70  Aligned_cols=116  Identities=16%  Similarity=0.201  Sum_probs=85.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+++|+++|+.++|||||+++|.+..+...  ...++|.....+.+.+ ++..++||||||+.++.           ..
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m  353 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AM  353 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hH
Confidence            4558999999999999999999987665322  2345676666666665 57889999999987642           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+++++.........+......     ..|+++++||+|+..
T Consensus       354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~-----~vPiIVviNKiDl~~  403 (787)
T PRK05306        354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA-----GVPIIVAINKIDKPG  403 (787)
T ss_pred             HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc-----CCcEEEEEECccccc
Confidence            22445667999999999877766666665544332     247999999999864

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.60  E-value=1.8e-14  Score=107.62  Aligned_cols=117  Identities=16%  Similarity=0.069  Sum_probs=77.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      +...+|+++|.+|+|||||+++++.......    ...|....+. .+... ....+.+|||+|...           +.
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~----~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~-----------~~   67 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPY-----------YD   67 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCceeeeeEEEEEECCEEEEEEEEECCCchh-----------hH
Confidence            3457999999999999999999987654211    1112222221 12221 224688999999532           22


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+++++|++++|+|++++-+...  ..|+..+.+...   ..|+++|+||+|+..
T Consensus        68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~  123 (182)
T cd04172          68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  123 (182)
T ss_pred             hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhc
Confidence            333456789999999999986655444  356666666432   358999999999753

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04116 Rab9 Rab9 subfamily

Probab=99.60  E-value=3.3e-14  Score=105.09  Aligned_cols=121  Identities=16%  Similarity=0.040  Sum_probs=73.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...+|+++|.+|+|||||++++++.......  ............+... ....+.+|||||...           +...
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~   70 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-----------FRSL   70 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc--CCceeeEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHh
Confidence            4589999999999999999999876542211  1111111111122221 224678899999532           2233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|++++++-+... ..+...+......  ....|+++|+||+|+..
T Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  128 (170)
T cd04116          71 RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE  128 (170)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence            4456678899999999985433322 3344444443321  12358999999999863

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04126 Rab20 Rab20 subfamily

Probab=99.60  E-value=2.4e-14  Score=109.91  Aligned_cols=113  Identities=24%  Similarity=0.150  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|.+|+|||||++.+++..+...     ..|....+....+ ....+.+|||||...+.           .....
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~-----------~l~~~   63 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQFH-----------GLGSM   63 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccch-----------hhHHH
Confidence            3789999999999999999998765211     1233333332222 44678999999975422           22234


Q ss_pred             hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++..+|++|+|+|++++-+... ..++..+.+...  ...|+++|+||+|+..
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~  114 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE  114 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            5678899999999986544443 233444444322  2358999999999864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.60  E-value=2.3e-14  Score=106.06  Aligned_cols=115  Identities=19%  Similarity=0.104  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      +|+++|.+|+|||||++++++......    ...|....+.  .+... ....+.+|||||...           +....
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKN----YKATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA   66 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence            689999999999999999998754211    1223322222  22221 234789999999642           22333


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+.++|++++|+|++++-+... ..++..+.+.... ...|+++|+||.|+.+
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~  120 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSS  120 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCc
Confidence            456778999999999975322222 3444444333221 1247899999999754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00880 Era_like Era (E

Probab=99.60  E-value=5.8e-14  Score=101.92  Aligned_cols=118  Identities=25%  Similarity=0.206  Sum_probs=76.2

Q ss_pred             EEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 026970           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  103 (230)
Q Consensus        24 liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (230)
                      ++|++|+|||||+|+|++....... ...+.|...............+.++||||+.+........    ..........
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~----~~~~~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER----EELARRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH----HHHHHHHHHh
Confidence            5899999999999999987654322 2333344444443443236789999999998755433321    1222234456


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       104 ~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +|++++|+++..........+......     ...|+++|+||+|+..
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~  118 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLP  118 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCC
Confidence            799999999985555444432222221     2358999999999986

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.60  E-value=2.5e-14  Score=104.49  Aligned_cols=113  Identities=14%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+|+|||||++++++...  .   ....|.......+.. .+..+.+|||||....           .......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~--~---~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV--V---TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC--C---CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence            589999999999999999998862  1   112222233333333 5678999999996532           1233345


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..+|++++|+|++++-+... ..++..+.... .....|+++|+||+|...
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~  114 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPG  114 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcc
Confidence            567899999999984322111 22222222211 122458999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.60  E-value=1.3e-14  Score=112.46  Aligned_cols=129  Identities=19%  Similarity=0.205  Sum_probs=91.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~   95 (230)
                      ...++|+++|.+++|||||.|.++|...+..  +....|+......+......++.|+||||+......... ....+..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            3458999999999999999999999998554  334445555555555557789999999999865432221 1222223


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+...+|.+++|+|+.+.-+......+..+.++..    .|.++|.||.|.+.
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k  199 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLK  199 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcch
Confidence            33455567899999999975444445667777777632    47999999999876

>PLN03110 Rab GTPase; Provisional

Probab=99.60  E-value=5.3e-14  Score=108.13  Aligned_cols=119  Identities=16%  Similarity=0.115  Sum_probs=76.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...+|+++|++|+|||||+++|++......  ....+........+... ....+.||||||...           +...
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~--~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~~   77 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-----------YRAI   77 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-----------HHHH
Confidence            447999999999999999999998764221  11111122212222221 224788999999532           2234


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..++++++|+|+++.-+... ..++..+.....  ...|+++|+||+|+..
T Consensus        78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~  131 (216)
T PLN03110         78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNH  131 (216)
T ss_pred             HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhccc
Confidence            4556678899999999975433333 345555555432  2358999999999754

>cd01889 SelB_euk SelB subfamily

Probab=99.60  E-value=2.9e-14  Score=107.62  Aligned_cols=116  Identities=16%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc---ccc--cCCCCccceeeeeEEEEee-------------CCeEEEEEeCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA---FKS--RASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFD   81 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~---~~~--~~~~~~~t~~~~~~~~~~~-------------~~~~~~liDtPG~~~   81 (230)
                      .+|+++|++|+|||||+++|++...   +..  .....++|.........+.             .+..+.+|||||+.+
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            3799999999999999999997311   100  1112234555444433331             256899999999731


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                                 +...+......+|++++|+|+.+..+..+...+... ...+    .|+++|+||+|+..
T Consensus        81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~~  134 (192)
T cd01889          81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILC----KKLIVVLNKIDLIP  134 (192)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcC----CCEEEEEECcccCC
Confidence                       222222334567899999999866655554433332 2222    37999999999875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.60  E-value=3.7e-14  Score=106.24  Aligned_cols=118  Identities=14%  Similarity=0.083  Sum_probs=71.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|||||||++++++...... .  +..........+..  ..+..+.+|||||...           +...
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~   68 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-V--PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL   68 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-C--CccccceeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence            47899999999999999999987654211 1  11111111111211  1346899999999532           1223


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|...
T Consensus        69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~  123 (183)
T cd04152          69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN  123 (183)
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence            3345678899999999974322221 223333333222 22458999999999864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00369 Ras-like protein; Provisional

Probab=99.60  E-value=2.7e-14  Score=107.51  Aligned_cols=117  Identities=24%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||++++++.......    ..|....+. .+... ....+.+|||||..++.           ..
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~l   69 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEY----DPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS-----------AM   69 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCc----CCchhhEEEEEEEECCEEEEEEEEeCCCCccch-----------hh
Confidence            489999999999999999999976542111    112211111 11211 22457789999976532           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++.++|++++|+|++++-+... ..+...+.+... ....|+++|+||+|+..
T Consensus        70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~  124 (189)
T PTZ00369         70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDS  124 (189)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            3345668899999999985543222 344455554322 22458999999999754

>cd00157 Rho Rho (Ras homology) family

Probab=99.60  E-value=1.8e-14  Score=106.50  Aligned_cols=116  Identities=18%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|+|||||+++|++.......   .+............ .....+.+|||||.....           ....
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY---VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence            37999999999999999999987642111   11111111111111 123468899999976532           1112


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ..+..+|++++|+|++++.+...  ..++..+.....   ..|+++|+||+|+..+
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~  119 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD  119 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence            34467899999999974332222  334444444322   4689999999998763

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04155 Arl3 Arl3 subfamily

Probab=99.60  E-value=7e-14  Score=103.62  Aligned_cols=117  Identities=18%  Similarity=0.110  Sum_probs=73.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|++|+|||||++.|.+......     ..|.......+.. .+..+.++||||...           +...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~   74 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY   74 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            4468999999999999999999998753211     1122222223333 577899999999632           2233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++++|+|+.+...... ...+..+.+.. .....|+++++||+|...
T Consensus        75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~  129 (173)
T cd04155          75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLAT  129 (173)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCcc
Confidence            4445678899999999974321111 22222222111 112358999999999865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04117 Rab15 Rab15 subfamily

Probab=99.60  E-value=2.8e-14  Score=104.66  Aligned_cols=113  Identities=16%  Similarity=0.164  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      +|+++|++|+|||||++.+++......    ...|....+  ..+.. .+  ..+.+|||||...+           ...
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~   65 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSS----HISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERY-----------QTI   65 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCC----CCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhH-----------Hhh
Confidence            689999999999999999987754221    122332222  22222 33  46789999995431           123


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++++|+|++++-+... ..++..+.....  ...|+++|.||.|+..
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~  119 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQ  119 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence            3455678899999999985533332 334444444321  2358999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04176 Rap2 Rap2 subgroup

Probab=99.59  E-value=2.8e-14  Score=104.72  Aligned_cols=116  Identities=18%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++.++........   .++........+.. ++  ..+.+|||||...+.           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY---DPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCchhheEEEEEEE-CCEEEEEEEEECCCccccc-----------chH
Confidence            58999999999999999999876542211   11111111122222 33  357789999975432           222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++.++|++++|+|.+++-+... ..++..+.+... ....|+++|+||+|+..
T Consensus        67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~  120 (163)
T cd04176          67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES  120 (163)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence            234567899999999985433222 444555555422 23458999999999754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.59  E-value=5.5e-14  Score=102.90  Aligned_cols=112  Identities=14%  Similarity=0.088  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+|+|||||++++...... .  .  .+|.......+.. ....+.+|||||...           +......+
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~-~--~--~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV-T--T--IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc-c--c--CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence            7899999999999999999654431 1  1  1122222222332 567899999999742           22333456


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      +.++|+++||+|++++.+..  ...+++.+.....  ...|+++++||.|+..
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  115 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIG--EAREELQRMLNEDELRDAVLLVFANKQDLPN  115 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence            78899999999998542221  2223333332211  1358999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04151 Arl1 Arl1 subfamily

Probab=99.59  E-value=4.2e-14  Score=103.37  Aligned_cols=112  Identities=13%  Similarity=0.047  Sum_probs=70.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|++|+|||||++++........     ..|.......+.. .+..+.+|||||...+           ......+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTSI-----------RPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHHH-----------HHHHHHH
Confidence            589999999999999999976654211     1132222333333 5678999999997531           1233355


Q ss_pred             cCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..+|++++|+|++++.+..  ...+...+...  .....|+++|+||+|+..
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~  114 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPG  114 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCC
Confidence            67889999999997532211  12222222221  112458999999999865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.59  E-value=5.9e-14  Score=102.04  Aligned_cols=112  Identities=22%  Similarity=0.184  Sum_probs=70.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (230)
                      |+++|++|+|||||+|+|.+......  .  ..|.......+.. .+..+.++||||...           +.......+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~--~--~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSED--T--IPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcC--c--cCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            78999999999999999998764221  1  1232233333332 457889999999642           223334456


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970          102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ..+|++++|+|+++....  ......+......  ....|+++|+||+|...
T Consensus        66 ~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  115 (159)
T cd04159          66 RGVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG  115 (159)
T ss_pred             hcCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence            778999999999743211  1112223332211  12358999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.59  E-value=5.3e-14  Score=106.58  Aligned_cols=116  Identities=17%  Similarity=0.177  Sum_probs=76.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEee------CCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK------DGQVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~------~~~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      +|+++|.+|+|||||++.+++......    ...|....+  ..+...      ....+.+|||+|...           
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~----~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------   66 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGR----PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-----------   66 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCC----CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------
Confidence            789999999999999999998764222    122322211  112211      124688999999643           


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-----------------ccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-----------------KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ivv~tk~D~~~  151 (230)
                      +......+++++|++++|+|++++-+... ..|+..+....+                 .....|+++|+||.|+.+
T Consensus        67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            22344467789999999999986655444 456665554311                 112358999999999865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.59  E-value=1.5e-13  Score=102.71  Aligned_cols=116  Identities=14%  Similarity=0.077  Sum_probs=74.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|..|||||||++.+........     ..|.......+.. .+..+.+|||||...           +...
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~   77 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPL   77 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            3447999999999999999999986543211     1222233333333 567899999999532           2233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      ...++.++|++++|+|++++.+..  .....+.+.+...  ...|+++|+||.|+..
T Consensus        78 ~~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~  132 (181)
T PLN00223         78 WRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPN  132 (181)
T ss_pred             HHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence            445678899999999998543222  2233344433211  2358999999999764

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.59  E-value=4.1e-15  Score=103.47  Aligned_cols=116  Identities=20%  Similarity=0.179  Sum_probs=66.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccc--ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|.+|+|||||+++|++.....  ......+.+.......... ....+.++|++|.........       .   
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~-------~---   69 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ-------F---   69 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH-------H---
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc-------c---
Confidence            68999999999999999999877531  1111122222222222211 233588999999753221111       1   


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                       ....+|++++|+|.++.-+... ..++.++...-+.....|+++|.||.|
T Consensus        70 -~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   70 -FLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             -HHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             -hhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence             1335689999999984432222 234444555433223469999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.59  E-value=1.3e-13  Score=103.16  Aligned_cols=115  Identities=12%  Similarity=0.073  Sum_probs=73.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|++|||||||++.+.......  .   ..|....+..+.. .+..+.+|||||...           +....
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~   78 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--T---IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW   78 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc--c---CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence            34799999999999999999996543311  1   1233333333333 567899999999632           22334


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      ..++.++|++++|+|++++-+..  .....+.+.+...  ...|+++|+||.|+..
T Consensus        79 ~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~  132 (182)
T PTZ00133         79 RHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPN  132 (182)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence            45678899999999997432221  1223333333221  2358999999999754

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.59  E-value=1.2e-13  Score=107.21  Aligned_cols=88  Identities=20%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+|+|||||+|+|+|......  ....+|..+....+.+ .+..+.++||||+.+...........    +...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~----~l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQ----VIAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHH----HHHh
Confidence            689999999999999999998764221  2234454444444443 67889999999987543222222222    2345


Q ss_pred             cCCccEEEEEEeCCC
Q 026970          101 KDGIHAVLVVFSVRS  115 (230)
Q Consensus       101 ~~~~~~il~v~d~~~  115 (230)
                      ++.+|++++|+|+++
T Consensus        75 ~~~ad~il~V~D~t~   89 (233)
T cd01896          75 ARTADLILMVLDATK   89 (233)
T ss_pred             hccCCEEEEEecCCc
Confidence            677899999999863

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=4.5e-14  Score=102.51  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|..+|||||||+..+-..+..    ....|+...+  ..+.+. ...++++|||+|.           ++|...
T Consensus        23 ~KlVflGdqsVGKTslItRf~yd~fd~----~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ-----------ERFrsl   87 (221)
T KOG0094|consen   23 YKLVFLGDQSVGKTSLITRFMYDKFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERFRSL   87 (221)
T ss_pred             EEEEEEccCccchHHHHHHHHHhhhcc----cccceeeeEEEEEEEEEcCcEEEEEEEecccH-----------HHHhhh
Confidence            689999999999999999998665422    1222333222  222221 2347899999995           456677


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      +..+++++.++++|+|++++-+.+. .+|++.+.+.-|.. ...+++|.||.|+.++.
T Consensus        88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkr  144 (221)
T KOG0094|consen   88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKR  144 (221)
T ss_pred             hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchh
Confidence            7888999999999999987777665 78888777765543 24688999999999744

>cd04134 Rho3 Rho3 subfamily

Probab=99.58  E-value=2.1e-14  Score=108.09  Aligned_cols=114  Identities=19%  Similarity=0.124  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ++|+++|.+|+|||||++.+++......    ...|....+. .+... ....+.+|||||...+.           ...
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-----------~l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQV----YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD-----------RLR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCc----cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc-----------ccc
Confidence            4799999999999999999998754221    1112222221 12221 12478899999975422           122


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++..+|++++|++++++-+...  ..++..+....   ...|+++|+||+|+..
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~  118 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLRE  118 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence            245678899999999986544433  23566665532   2358999999999875

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd00879 Sar1 Sar1 subfamily

Probab=99.58  E-value=9.5e-14  Score=104.57  Aligned_cols=127  Identities=13%  Similarity=0.095  Sum_probs=78.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|++|||||||++++.+.....     ...|.......+.. .+..+.++||||...           +...
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~   79 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRL   79 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            345899999999999999999999865411     11133223333443 567899999999542           1122


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCCC-ChhhHHHHhc
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELED-NDETLEDYLG  162 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~  162 (230)
                      ...++.++|++++|+|+++.-+..  .....+...+.  .....|+++++||+|+... ....+.+++.
T Consensus        80 ~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~  146 (190)
T cd00879          80 WKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALG  146 (190)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence            334567889999999997432211  12223333322  1234689999999998642 1334444443

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.58  E-value=4.9e-14  Score=123.93  Aligned_cols=117  Identities=15%  Similarity=0.214  Sum_probs=82.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee---CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ...++|+++|++++|||||+++|.+......  ..+++|.....+.+.+.   .+..+.||||||+..           +
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F  308 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------F  308 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------H
Confidence            4558999999999999999999987765322  23445555444433332   347899999999642           2


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .......+..+|++++|+|++++........+..+...     ..|+++++||+|+..
T Consensus       309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~~  361 (742)
T CHL00189        309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA-----NVPIIVAINKIDKAN  361 (742)
T ss_pred             HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc-----CceEEEEEECCCccc
Confidence            23333455678999999999877766666666554331     348999999999875

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.58  E-value=2.4e-14  Score=105.33  Aligned_cols=117  Identities=19%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|++|+|||||+++++....  .+... +.+.......... ++.  .+.+|||||......          ....
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~-~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~----------~~~~   66 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRF--IGEYD-PNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT----------EQLE   66 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcc--ccccC-CChHHhceEEEEE-CCEEEEEEEEECCCCccccc----------chHH
Confidence            489999999999999999986543  11111 1111111112222 333  578999999763110          1112


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|++++-+... ..++..+.+........|+++|+||+|+..
T Consensus        67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  120 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH  120 (165)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence            33456799999999985533332 344555555321122458999999999754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.58  E-value=4.1e-14  Score=106.28  Aligned_cols=114  Identities=13%  Similarity=0.044  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ++|+++|.+|+|||||++++++......    ...|....+. .+...  ....+.+|||||...           +...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence            4799999999999999999998764211    1122222222 22221  123688999999542           1122


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+.++|++++|+|++++.+....  .++..+... .  ...|+++|+||+|+..
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~  119 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-C--PGTPIMLVGLKTDLRK  119 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhhh
Confidence            33456789999999999855443332  244444332 2  2358999999999864

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.58  E-value=7e-14  Score=103.96  Aligned_cols=113  Identities=20%  Similarity=0.122  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|+|||||++.+.......    ....|....+. .+.. ++  ..+.+|||||...+.           ..
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~----~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~   65 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPS----EYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD-----------RL   65 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCceeeeeEEEEEE-CCEEEEEEEEECCCccchh-----------hh
Confidence            589999999999999999999765411    11223322222 2222 33  467899999975432           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+.++|++++|+|++++-+....  .++..+....+   ..|+++|+||+|+..
T Consensus        66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~  119 (175)
T cd01874          66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRD  119 (175)
T ss_pred             hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence            23466788999999999865444432  35555555322   358999999999754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>COG2262 HflX GTPases [General function prediction only]

Probab=99.58  E-value=7.4e-14  Score=112.70  Aligned_cols=129  Identities=24%  Similarity=0.193  Sum_probs=90.8

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...-+.|+++|.|++|||||+|+|++...+..  .....|.++....+.+.++..+.+-||-||.+.  -..++...|..
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~--LP~~LV~AFks  264 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVA--DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD--LPHPLVEAFKS  264 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeecc--ccccccccCceeEEEeCCCceEEEecCccCccc--CChHHHHHHHH
Confidence            45668999999999999999999998876432  344557777666677767899999999999862  23344444444


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+... ..+|++++|+|++++.-.... ...+.|.+. +.. ..|+++|+||+|++.
T Consensus       265 TLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~  318 (411)
T COG2262         265 TLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLE  318 (411)
T ss_pred             HHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccC
Confidence            44433 478999999999866333332 333334443 322 269999999999986

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=3.4e-14  Score=113.88  Aligned_cols=129  Identities=22%  Similarity=0.277  Sum_probs=84.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----cCCCCccceeeeeEEEEe-eCC--eEEEEEeCCCCCCCCCCcH-
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSE-   87 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~-   87 (230)
                      +-.++++++|++|.|||||||+|++......     ......-|.......... .+|  .+++|+|||||+|.-.... 
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            4458999999999999999999998854321     111111133333332222 233  3788999999998543211 


Q ss_pred             ------HHHHHHHHHHHh-------hc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           88 ------FVGKEIVKCIGM-------AK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        88 ------~~~~~~~~~~~~-------~~--~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                            .+..++..++..       ..  .++|++||++.++ .++.+.|...++.+...+      ++|.|+.|+|.+.
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT  172 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLT  172 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCC
Confidence                  122222222211       11  3789999999875 458988988888887764      7999999999987

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.58  E-value=2.8e-14  Score=100.30  Aligned_cols=127  Identities=15%  Similarity=0.123  Sum_probs=82.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .++|++||.+|+|||||+-++....+-+..+..  +..+.....+.. .+..++.+|||+|..           +++...
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~t--IGvDFkvk~m~vdg~~~KlaiWDTAGqE-----------rFRtLT   77 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTT--IGVDFKVKVMQVDGKRLKLAIWDTAGQE-----------RFRTLT   77 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcccCccCCce--eeeeEEEEEEEEcCceEEEEEEeccchH-----------hhhccC
Confidence            489999999999999999999866542222211  222222222222 133578999999954           455666


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHH
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED  159 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~  159 (230)
                      ..+|+++.++|+|+|++.|-+... ..|++.+..+. .+...-.++|.||+|+-.+...+-++
T Consensus        78 pSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ys-tn~diikmlVgNKiDkes~R~V~reE  139 (209)
T KOG0080|consen   78 PSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYS-TNPDIIKMLVGNKIDKESERVVDREE  139 (209)
T ss_pred             HhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhc-CCccHhHhhhcccccchhcccccHHH
Confidence            688999999999999986655443 45555555543 33334567999999976433333333

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.58  E-value=5.6e-14  Score=108.50  Aligned_cols=116  Identities=14%  Similarity=0.029  Sum_probs=76.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|||||||++.+++..+...    ...|....+. .+.. .....+.||||||...           +..
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~----y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~   76 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPET----YVPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDN   76 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCC----cCCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHH
Confidence            347999999999999999999987654211    1112222221 1222 1234788999999532           223


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....++.++|++++|+|++++-+...  ..|+..+.+...   ..|+++|+||+|+..
T Consensus        77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~  131 (232)
T cd04174          77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRT  131 (232)
T ss_pred             HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence            33456789999999999986655443  456666666432   348999999999753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.58  E-value=6.2e-14  Score=106.70  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEEee--------------------------------
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLK--------------------------------   66 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------------   66 (230)
                      .+|+++|++|+|||||+.+|++... ........+.+....+....+.                                
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            3789999999999999999987632 1111112233333332222211                                


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~t  145 (230)
                      ....+.||||||..           .+...+......+|++++|+|+++. ........+..+.. .+   ..|+++|+|
T Consensus        81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivvN  145 (203)
T cd01888          81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQN  145 (203)
T ss_pred             cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEEE
Confidence            12678999999952           2334444455678999999999853 33334444444433 22   246899999


Q ss_pred             CCCCCC
Q 026970          146 GGDELE  151 (230)
Q Consensus       146 k~D~~~  151 (230)
                      |+|+..
T Consensus       146 K~Dl~~  151 (203)
T cd01888         146 KIDLVK  151 (203)
T ss_pred             chhccC
Confidence            999875

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.57  E-value=1.1e-13  Score=105.24  Aligned_cols=115  Identities=14%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ++|+++|++|+|||||++.|.+........   ++  .........   ..+..+.+|||||....           ...
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~---s~--~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~   64 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVT---SI--EPNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDK   64 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCCccC---cE--eecceEEEeecCCCCceEEEEECCCCHHH-----------HHH
Confidence            478999999999999999999875422211   11  111111211   13567999999997531           222


Q ss_pred             HHhhcCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~-~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~  151 (230)
                      +...+..+ ++++||+|+.+.. .......+++...+.    .....|+++++||+|+..
T Consensus        65 ~~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          65 LLETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             HHHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            23344555 9999999997432 222233333332221    112458999999999875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.57  E-value=3.5e-14  Score=119.66  Aligned_cols=120  Identities=18%  Similarity=0.256  Sum_probs=82.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCccceeeeeEEEEee
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK   66 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~   66 (230)
                      ..+..+|+++|+.++|||||++.|++......                             .....++|.......+.. 
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-   81 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-   81 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence            34558999999999999999999985432110                             011457777777776665 


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                      ++..+.||||||+.++.           ..+......+|++++|+|+++  .+...+...+..+.. ++.   +++++++
T Consensus        82 ~~~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi  146 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI  146 (425)
T ss_pred             CCeEEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence            67899999999975422           112223457899999999986  555555555544433 342   3699999


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||+|+..
T Consensus       147 NK~Dl~~  153 (425)
T PRK12317        147 NKMDAVN  153 (425)
T ss_pred             Ecccccc
Confidence            9999874

>cd04114 Rab30 Rab30 subfamily

Probab=99.57  E-value=1.2e-13  Score=101.91  Aligned_cols=117  Identities=15%  Similarity=0.108  Sum_probs=72.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|++|+|||||++.+++......  .....+.......+.. .+  ..+.++||||...           +...
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~   72 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRSI   72 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence            37999999999999999999986543211  1111222222222222 33  4578899999642           1223


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+..
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~  126 (169)
T cd04114          73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAE  126 (169)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            3345678899999999874432221 3444445544322  347899999999864

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.57  E-value=3.9e-14  Score=105.08  Aligned_cols=111  Identities=23%  Similarity=0.165  Sum_probs=71.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      |+++|.+|+|||||++++++...... . .  .|....+. .+.. ++  ..+.+|||||.....           ....
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~-~-~--~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~   64 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPED-Y-V--PTVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRP   64 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCC-C-C--CcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhch
Confidence            58999999999999999998764221 1 1  12222222 2222 33  358899999975432           2222


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+.++|++++|+|+++.-+...  ..++..+....   ...|+++|+||+|+..
T Consensus        65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~  116 (174)
T smart00174       65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRE  116 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhh
Confidence            45678899999999985433332  23555555532   2458999999999865

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.3e-14  Score=103.86  Aligned_cols=122  Identities=21%  Similarity=0.210  Sum_probs=80.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+|+|.+|||||||+-++....+.....+..+.........+. .....+.+|||.|...+.           ...
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQERy~-----------sla   71 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQERYH-----------SLA   71 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCccccc-----------ccc
Confidence            34799999999999999998887665432222222222212222111 123578899999976432           445


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ..++++++++|+|+|+++.-+... +.|++.|++..+++  ..+.+|+||+|+....
T Consensus        72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R  126 (200)
T KOG0092|consen   72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERR  126 (200)
T ss_pred             cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcc
Confidence            588999999999999985433333 67777777765432  3566799999998643

>cd04118 Rab24 Rab24 subfamily

Probab=99.57  E-value=6.5e-14  Score=105.75  Aligned_cols=114  Identities=20%  Similarity=0.218  Sum_probs=71.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .+|+++|.+|+|||||++++++...... .  ...|....+.  .+.. ++  ..+.+|||||.....           .
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~   65 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVG-P--YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYE-----------A   65 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCc-C--cccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhh-----------h
Confidence            3799999999999999999997654211 1  1112222221  2222 33  356799999964321           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+.++|++++|+|+++.-+... ..+++.+... .  ...|+++|+||+|+..
T Consensus        66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~--~~~piilv~nK~Dl~~  119 (193)
T cd04118          66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-E--EHCKIYLCGTKSDLIE  119 (193)
T ss_pred             hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-C--CCCCEEEEEEcccccc
Confidence            22345668899999999975433222 3445554442 1  2358999999999764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04148 RGK RGK subfamily

Probab=99.57  E-value=5.5e-14  Score=108.35  Aligned_cols=118  Identities=20%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|+|||||++.+++.........+.. ........+.. .....+.+|||||...      .    +.   .
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~-~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~---~   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASG-DDDTYERTVSVDGEESTLVVIDHWEQEM------W----TE---D   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCc-cccceEEEEEECCEEEEEEEEeCCCcch------H----HH---h
Confidence            3799999999999999999976554211111111 00111111221 1335788999999751      1    11   1


Q ss_pred             hhcC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           99 MAKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        99 ~~~~-~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .++. ++|++++|+|++++-+... ..++..+.+. ......|+++|+||+|+...
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc
Confidence            2334 7899999999985533332 3445555443 22234689999999998653

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.3e-13  Score=98.12  Aligned_cols=131  Identities=17%  Similarity=0.137  Sum_probs=88.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+++++|.+|||||.|+..++...+.+......++........+. ....++++|||.|..           .+.....
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe-----------~frsv~~   73 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQE-----------SFRSVTR   73 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcH-----------HHHHHHH
Confidence            4789999999999999999999877644333222222222222222 134589999999964           4456667


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC---hhhHHHHhcc
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGR  163 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~  163 (230)
                      .+|+++-++|+|+|++.+-+... ..|+..++.....+  -.++++.||+|+....   .+.-++|.++
T Consensus        74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EEGeaFA~e  140 (216)
T KOG0098|consen   74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEEGEAFARE  140 (216)
T ss_pred             HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHHHHHHHHH
Confidence            88899999999999986655544 56777777764333  3688999999987533   2334445543

>cd04177 RSR1 RSR1 subgroup

Probab=99.57  E-value=9e-14  Score=102.65  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++++++...... . .  .|....+ ..+... ....+.+|||||...+.           ...
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~-~--~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~   66 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIES-Y-D--PTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT-----------AMR   66 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-c-C--CcchheEEEEEEECCEEEEEEEEeCCCcccch-----------hhh
Confidence            5899999999999999999987654221 1 1  1211111 112221 22477899999976532           222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..++++++|++.+++-+... ..+...+.+... ....|+++++||.|...
T Consensus        67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~  120 (168)
T cd04177          67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLED  120 (168)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccc
Confidence            344567789999999975433222 344444544332 22458999999999865

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.57  E-value=3.8e-14  Score=112.44  Aligned_cols=115  Identities=25%  Similarity=0.312  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccccc---CC-------------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSR---AS-------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~---~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      +|+++|++|+|||||+|+|++.......   ..             ..+.+.......+.+ ++..+.+|||||..++  
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f--   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF--   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence            5899999999999999999764321100   00             112233333344444 6788999999997532  


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                               .......+..+|++++|+|++..........++.+... +    .|.++++||+|....
T Consensus        78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~~  131 (268)
T cd04170          78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRERA  131 (268)
T ss_pred             ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCCC
Confidence                     12222344567999999999877666656666554432 2    478999999998764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04133 Rop_like Rop subfamily

Probab=99.57  E-value=6.7e-14  Score=103.99  Aligned_cols=113  Identities=20%  Similarity=0.152  Sum_probs=76.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|+|||||+.+++.......    ...|....+. .+.. ++  ..+.+|||+|...+.           ..
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~----~~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~~-----------~~   65 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTD----YIPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDYN-----------RL   65 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCC----CCCcceeeeEEEEEE-CCEEEEEEEEECCCCcccc-----------cc
Confidence            4799999999999999999997654211    1112222221 1222 33  478899999976543           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+.++|++++|+|.+++-+...  ..|+..+.+.. .  ..|+++|+||+|+.+
T Consensus        66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~  119 (176)
T cd04133          66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRD  119 (176)
T ss_pred             chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhcc
Confidence            2346788999999999987666554  35666665542 2  358999999999854

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PLN03108 Rab family protein; Provisional

Probab=99.56  E-value=1.5e-13  Score=105.23  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=72.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|++|+|||||++.+++.......  ...+........+.. ++  ..+.+|||||...           +...
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~--~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~   71 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSI   71 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence            379999999999999999999977542221  111111111112222 23  3678999999532           1122


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|+++.-+... ..++..+.....  ...|+++|+||+|+..
T Consensus        72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~  125 (210)
T PLN03108         72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH  125 (210)
T ss_pred             HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence            3345567899999999985433222 244444444322  2358999999999864

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.56  E-value=1.1e-13  Score=101.47  Aligned_cols=117  Identities=19%  Similarity=0.165  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|+|||||+++++.......   ..+.+........... ....+.++||||.....           ....
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~~   66 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-----------AIRD   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccc---cCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-----------HHHH
Confidence            3799999999999999999997654211   1111111111111211 23468899999965321           2233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..++++++|++..+.-+.. ...++..+..... ....|+++|+||+|+..
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            4556778999999987432211 1344444444311 23468999999999875

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>smart00053 DYNc Dynamin, GTPase

Probab=99.56  E-value=3.8e-13  Score=103.91  Aligned_cols=140  Identities=17%  Similarity=0.198  Sum_probs=84.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC--C-------------------------------------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS--S-------------------------------------------   52 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~--~-------------------------------------------   52 (230)
                      ..+.|+++|++|+||||++++|+|...+..+...  .                                           
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  104 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT  104 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3368999999999999999999997532211100  0                                           


Q ss_pred             ----ccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCC-ccEEEEEEeCCCCCCHHH-HHH
Q 026970           53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEE-EAA  124 (230)
Q Consensus        53 ----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~il~v~d~~~~~~~~~-~~~  124 (230)
                          +++...-...+..++...++|+||||+......  .......+.+.+..+... .+.+|+|+++...+...+ ..+
T Consensus       105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i  184 (240)
T smart00053      105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL  184 (240)
T ss_pred             CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence                000000011111123357999999999753211  133445555655555553 358889999876666555 455


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970          125 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (230)
Q Consensus       125 l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (230)
                      .+.+...     ..++++|+||.|...+ +....+.+.+
T Consensus       185 a~~ld~~-----~~rti~ViTK~D~~~~-~~~~~~~~~~  217 (240)
T smart00053      185 AKEVDPQ-----GERTIGVITKLDLMDE-GTDARDILEN  217 (240)
T ss_pred             HHHHHHc-----CCcEEEEEECCCCCCc-cHHHHHHHhC
Confidence            5555442     3489999999999864 3336666653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.56  E-value=5.2e-14  Score=109.67  Aligned_cols=126  Identities=19%  Similarity=0.152  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+++|-|++|||||+|+|.....  .......+|..+.+..+.+.+...+++-|.||+......+..+...|.+.+..
T Consensus       197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            3578999999999999999998875  22345567777888777765666799999999998777777788888887776


Q ss_pred             hcCCccEEEEEEeCCCCC--CH-HHHHHH-HHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRF--SQ-EEEAAL-HSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~--~~-~~~~~l-~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +    +.++||+|.....  ++ ...+.+ ..+..+-.....+|.++|.||+|..+
T Consensus       275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e  326 (366)
T KOG1489|consen  275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE  326 (366)
T ss_pred             h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence            6    6999999997441  22 222222 22222212224568999999999864

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.56  E-value=8.5e-14  Score=103.42  Aligned_cols=113  Identities=20%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|+|||||+.+++.......   . ..|....+. .+.. ++  ..+.+|||||.....           ..
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~---~-~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~   65 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGE---Y-IPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------RL   65 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCc---C-CCcceeeeEEEEEE-CCEEEEEEEEECCCchhhh-----------hh
Confidence            5899999999999999999987653211   1 112221111 1222 33  468899999964321           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+.++|++++|+|++++-+...  ..++..+....   ...|+++|+||+|+..
T Consensus        66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~  119 (174)
T cd01871          66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD  119 (174)
T ss_pred             hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhcc
Confidence            2345678999999999985544333  23555555432   2358999999999854

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01892 Miro2 Miro2 subfamily

Probab=99.56  E-value=1.8e-13  Score=101.19  Aligned_cols=118  Identities=14%  Similarity=0.013  Sum_probs=71.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      +..+|+++|.+|+|||||++++++..... ....+..........+.. ++  ..+.++||+|...+..           
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~-----------   69 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSL-NAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAIL-----------   69 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCc-ccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccc-----------
Confidence            35799999999999999999999876420 111111111111122222 33  4678899999654321           


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++-+  ......++.. +......|+++|+||+|+.+
T Consensus        70 ~~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~  122 (169)
T cd01892          70 LNDAELAACDVACLVYDSSDPKS--FSYCAEVYKK-YFMLGEIPCLFVAAKADLDE  122 (169)
T ss_pred             cchhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHH-hccCCCCeEEEEEEcccccc
Confidence            11234578899999999975422  1222233322 22222468999999999864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.55  E-value=1.3e-13  Score=114.91  Aligned_cols=119  Identities=16%  Similarity=0.206  Sum_probs=80.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc------c--------cccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA------F--------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~------~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      .+..+|+++|+.++|||||+++|++...      +        .......++|.......+.. ++..+.|+||||+.  
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~--   86 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA--   86 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH--
Confidence            4458999999999999999999986211      0        01112456666665544443 56789999999963  


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                               .+...+......+|++++|+|+.+.....+...+..+.. .+.   +.+++++||+|+..
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi---~~iivvvNK~Dl~~  142 (396)
T PRK12735         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV---PYIVVFLNKCDMVD  142 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC---CeEEEEEEecCCcc
Confidence                     233333445567899999999986676666666655543 232   23556899999874

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.55  E-value=8.9e-14  Score=105.47  Aligned_cols=115  Identities=22%  Similarity=0.262  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|.+|+|||||++++++......   ....+.......+.. .+  ..+.++||||...+.           ....
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~~~~   65 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPK---YRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFP-----------AMRK   65 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc---CCCchhhheeEEEEE-CCEEEEEEEEECCCchhhh-----------HHHH
Confidence            589999999999999999998764211   111111111122222 33  478899999975421           1222


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|...
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~  118 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE  118 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence            45678899999999975433332 333444444322 23468999999999865

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.55  E-value=4.5e-14  Score=103.22  Aligned_cols=115  Identities=18%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|++|+|||||+|+|.|....    .  ..|...     .+ ...  .+|||||.....   ....    ..+..
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~----~--~~~~~v-----~~-~~~--~~iDtpG~~~~~---~~~~----~~~~~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTL----A--RKTQAV-----EF-NDK--GDIDTPGEYFSH---PRWY----HALIT   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCcc----C--ccceEE-----EE-CCC--CcccCCccccCC---HHHH----HHHHH
Confidence            37999999999999999999976421    0  112211     11 111  269999986432   1122    22223


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                      .+.++|++++|+|+++..+....    ++... +.  ..|+++++||+|+...+...+.+++.
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~  116 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDADVAATRKLLL  116 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcccHHHHHHHHH
Confidence            45688999999999754332222    22222 11  24799999999985433333344443

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.55  E-value=1.9e-13  Score=102.66  Aligned_cols=126  Identities=22%  Similarity=0.302  Sum_probs=83.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccC---CCCcc--ceeeeeEE-EEeeCC--eEEEEEeCCCCCCCCCCcHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA---SSSGV--TSTCEMQR-TVLKDG--QVVNVIDTPGLFDFSAGSEFVG   90 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~---~~~~~--t~~~~~~~-~~~~~~--~~~~liDtPG~~~~~~~~~~~~   90 (230)
                      .++|+++|.+|.||||++|.|+......+..   +..++  |....... ....++  -+++++|||||+|.- .++.-+
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI-nN~ncW  124 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI-NNDNCW  124 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccccc-Cccchh
Confidence            4799999999999999999998766543221   11122  22222221 111233  368899999999853 333344


Q ss_pred             HHHHHHHHhhc------------------CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           91 KEIVKCIGMAK------------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        91 ~~~~~~~~~~~------------------~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +-+.+++...+                  .++|+++|++.++ ..+.+.|...++.|.+..      +++.|+.|+|.+.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlT  198 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeeccccc
Confidence            44444433221                  3579999999885 457777888888887764      6999999999886

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.55  E-value=1.4e-13  Score=122.47  Aligned_cols=122  Identities=20%  Similarity=0.192  Sum_probs=81.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~   96 (230)
                      ..+|+++|++|+|||||+|+|+|......  ...++|.+.....+.. ++..+.++||||.++......  ...+.+...
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence            36899999999999999999999865322  2356677666655554 677899999999987543211  112222221


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ......+|++++|+|+++ .... ..+...+.+.     ..|+++++||+|..+
T Consensus        80 -~l~~~~aD~vI~VvDat~-ler~-l~l~~ql~e~-----giPvIvVlNK~Dl~~  126 (772)
T PRK09554         80 -YILSGDADLLINVVDASN-LERN-LYLTLQLLEL-----GIPCIVALNMLDIAE  126 (772)
T ss_pred             -HHhccCCCEEEEEecCCc-chhh-HHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence             112357899999999984 3322 2333444442     258999999999874

>cd01875 RhoG RhoG subfamily

Probab=99.55  E-value=9e-14  Score=104.84  Aligned_cols=114  Identities=19%  Similarity=0.095  Sum_probs=73.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ..+|+++|.+|||||||+..+....+...    ...|....+. .+.. ++  ..+.+|||||...+           ..
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~~   66 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEEY-----------DR   66 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence            37899999999999999999987654111    1223322222 1112 33  46889999996432           22


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....++.++|++++|+|++++-+....  .+...+....   ...|+++|+||.|+..
T Consensus        67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~  121 (191)
T cd01875          67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRN  121 (191)
T ss_pred             hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhc
Confidence            334567889999999999865444332  2444444432   2358999999999854

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.55  E-value=2.1e-13  Score=118.94  Aligned_cols=116  Identities=22%  Similarity=0.312  Sum_probs=84.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .|+++|+.++|||||+++|+|..... ......++|....+......++..+.||||||+.           .+...+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence            68999999999999999999864211 1123357787776665554467789999999963           23333445


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++|++++|+|+++.+...+...+..+.. ++.   +++++|+||+|+.+
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~  118 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVD  118 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCC
Confidence            5677899999999987777777777766544 342   35789999999875

>cd00876 Ras Ras family

Probab=99.55  E-value=8.6e-14  Score=101.54  Aligned_cols=115  Identities=18%  Similarity=0.152  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|++|+|||||++++++... ...  ..+.+.......... .  ...+.++|+||...           +.....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF-VEE--YDPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-CcC--cCCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence            589999999999999999998763 111  111122222222222 3  34688999999643           112233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|.++.-+... ..+...+..... ....|+++|+||+|...
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~  118 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN  118 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence            44567799999999874322222 344444444432 12458999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.55  E-value=3.8e-14  Score=101.67  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=65.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|++|+|||||+|++++...  .    ...|..     ..+ ..   .+|||||...   .    .......+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~----~~~t~~-----~~~-~~---~~iDt~G~~~---~----~~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--L----YKKTQA-----VEY-ND---GAIDTPGEYV---E----NRRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--c----ccccee-----EEE-cC---eeecCchhhh---h----hHHHHHHHHHH
Confidence            799999999999999999998753  1    111221     111 11   5899999631   0    11222222234


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++++|++++|+|++++.+.....+..    .++    .|+++|+||+|+.+
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAE  102 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence            78899999999998665543333322    222    27999999999864

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.55  E-value=8.7e-14  Score=106.74  Aligned_cols=115  Identities=22%  Similarity=0.315  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEee---------CCeEEEEEeC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------DGQVVNVIDT   76 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~liDt   76 (230)
                      ++|+++|+.++|||||+.+|+........              ....++|.........+.         .+..+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            47999999999999999999755321110              012234443332222221         1567899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ||+.++.           ......+..+|++++|+|+.+.........+...... +    .|+++|+||+|+.
T Consensus        81 PG~~~f~-----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFS-----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R----VKPVLVINKIDRL  138 (222)
T ss_pred             CCccccH-----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence            9987632           2333455677999999999877777666666554432 2    3799999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.55  E-value=2.5e-13  Score=94.26  Aligned_cols=148  Identities=16%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ...+++|.+|+|||+|+-.+....+  ++.....+..+..+..+... ....+++|||+|.           +.++....
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtits   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTITS   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------HHHHHHHH
Confidence            4568999999999999988876543  22222222233333344432 2347899999994           55667778


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT  174 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~  174 (230)
                      .+++++|++++|+|+++.-+... ..|++.+...+.   ..|-++|.||.|.....   .+....|...-.-+.+...++
T Consensus        76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaK  152 (198)
T KOG0079|consen   76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAK  152 (198)
T ss_pred             HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhh
Confidence            89999999999999985544443 677777777654   34789999999987532   233444444333333334445


Q ss_pred             HHHhHHHHH
Q 026970          175 KLRDQQFEV  183 (230)
Q Consensus       175 ~~~~~~~~~  183 (230)
                      +.+..+.++
T Consensus       153 e~~NvE~mF  161 (198)
T KOG0079|consen  153 ENENVEAMF  161 (198)
T ss_pred             hcccchHHH
Confidence            444444444

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=6.1e-14  Score=103.12  Aligned_cols=118  Identities=19%  Similarity=0.120  Sum_probs=83.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ...++|+++|.+|+|||-|+.+++...+.....+    |+...+.  .+.. ..-.+.++|||.|...           +
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks----TIGvef~t~t~~vd~k~vkaqIWDTAGQER-----------y   76 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS----TIGVEFATRTVNVDGKTVKAQIWDTAGQER-----------Y   76 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCccccc----ceeEEEEeeceeecCcEEEEeeecccchhh-----------h
Confidence            4458999999999999999999987765222222    3333322  2222 1224678999999643           3


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.....+|+++.+.++|+|++.+.+.+. ..|++.|+.....  ..++++|.||+|+..
T Consensus        77 rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~~  133 (222)
T KOG0087|consen   77 RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLNH  133 (222)
T ss_pred             ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhhh
Confidence            4556678999999999999986666554 6777777775433  458999999999875

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.54  E-value=6.4e-14  Score=103.42  Aligned_cols=113  Identities=19%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE----------------------------------------
Q 026970           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----------------------------------------   61 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~----------------------------------------   61 (230)
                      |+++|..++|||||||+|+|....+.+....  |......                                        
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~--T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC--TAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS   78 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST--TSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCccccccc--ccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence            7899999999999999999988644332211  1110000                                        


Q ss_pred             ---------------EEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHH
Q 026970           62 ---------------RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH  126 (230)
Q Consensus        62 ---------------~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~  126 (230)
                                     .........+.|+||||+.+......       ..+..+.+.+|++|+|+++...++..+...+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~  151 (168)
T PF00350_consen   79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLK  151 (168)
T ss_dssp             HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHH
T ss_pred             ccccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHH
Confidence                           01111223599999999976433333       33334446789999999998666655544444


Q ss_pred             HHHHHhcccccceEEEEEeCC
Q 026970          127 SLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus       127 ~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      ......    ...+++|+||+
T Consensus       152 ~~~~~~----~~~~i~V~nk~  168 (168)
T PF00350_consen  152 QMLDPD----KSRTIFVLNKA  168 (168)
T ss_dssp             HHHTTT----CSSEEEEEE-G
T ss_pred             HHhcCC----CCeEEEEEcCC
Confidence            333322    23599999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.54  E-value=9.2e-14  Score=120.15  Aligned_cols=115  Identities=18%  Similarity=0.226  Sum_probs=77.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-----------------CeEEEEEeCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------------GQVVNVIDTPGLFD   81 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~liDtPG~~~   81 (230)
                      .+.|+++|++++|||||+|+|++.....  ...+++|.+.....+....                 ...+.||||||+..
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~   81 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA   81 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence            4689999999999999999999886522  1223344432222221100                 02488999999753


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +           .......+..+|++++|+|+++.....+...+..+...     ..|+++++||+|+..
T Consensus        82 f-----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        82 F-----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP  135 (590)
T ss_pred             H-----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence            2           12233455688999999999877777776666655442     247999999999864

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.54  E-value=1.7e-13  Score=105.24  Aligned_cols=114  Identities=18%  Similarity=0.057  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++.+++..+...  ..  .|....+. .+.. .....+.+|||+|...           +....
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~--y~--pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-----------~~~l~   66 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGS--YV--PTVFENYTASFEIDKRRIELNMWDTSGSSY-----------YDNVR   66 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCc--cC--CccccceEEEEEECCEEEEEEEEeCCCcHH-----------HHHHh
Confidence            5899999999999999999997654211  11  12222221 2222 1234688899999642           22333


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+++++|++++|+|++++-+...  ..|...+....   ...|+++|+||+|+..
T Consensus        67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~  119 (222)
T cd04173          67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRT  119 (222)
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECccccc
Confidence            456789999999999985533332  23333333322   2358999999999864

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.54  E-value=9.3e-14  Score=103.68  Aligned_cols=117  Identities=21%  Similarity=0.218  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|+|||||++.+++.......   .+.+........... ....+.++||||..++.           ....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~   67 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY---YPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS-----------ILPQ   67 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcccc---CcchhhhEEEEEEECCEEEEEEEEECCChHhhH-----------HHHH
Confidence            68999999999999999999977542111   111111111112221 12457899999965321           2222


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|.++..+... ..+...+.+..+. ...|+++|+||+|...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT  120 (180)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence            44557799999999985433222 3333444443321 2358999999999864

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.54  E-value=3.3e-13  Score=117.26  Aligned_cols=115  Identities=22%  Similarity=0.275  Sum_probs=82.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      +|+++|+.++|||||+++|+|..... ......++|....+..+.. .+..+.+|||||+.           .+...+..
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNAIA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHHHh
Confidence            68999999999999999999854211 1122456677776666655 55889999999953           23344445


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+.++|++++|+|+++.....+...+..+.. .+.   +++++|+||+|+.+
T Consensus        70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~  117 (581)
T TIGR00475        70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVN  117 (581)
T ss_pred             hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCC
Confidence            5678899999999987666666666655443 342   24999999999875

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04128 Spg1 Spg1p

Probab=99.53  E-value=1.3e-13  Score=103.17  Aligned_cols=113  Identities=14%  Similarity=0.116  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .+|+++|.+|+|||||++++++.....  .  ...|....+  ..+.. ++  ..+.+|||+|...+           ..
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~--~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~   64 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--D--YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREF-----------IN   64 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC--C--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhH-----------HH
Confidence            378999999999999999998765421  1  112322222  12222 33  46889999996432           23


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+++++|++++|+|++++.+... ..++..+.+... . ..| ++|+||+|+..
T Consensus        65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~-~~p-ilVgnK~Dl~~  118 (182)
T cd04128          65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-T-AIP-ILVGTKYDLFA  118 (182)
T ss_pred             hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C-CCE-EEEEEchhccc
Confidence            34456788999999999986544433 345555555322 1 234 68899999863

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.53  E-value=1.7e-13  Score=107.07  Aligned_cols=116  Identities=19%  Similarity=0.184  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|.+|+|||||++.+++..... .  ..+++.......+.. ++  ..+.||||||...+.           ....
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~--y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~-----------~~~~   66 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFEE-Q--YTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFP-----------AMRR   66 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCC-C--CCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhh-----------HHHH
Confidence            79999999999999999998765421 1  111111111112222 33  467899999965321           1122


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------ccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-------KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-------~~~~~~~ivv~tk~D~~~  151 (230)
                      .++..+|++++|+|++++-+... ..+++.+.+...       .....|+++|+||+|+..
T Consensus        67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            34567899999999985533332 344444543210       113458999999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.53  E-value=3.4e-13  Score=97.71  Aligned_cols=116  Identities=22%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||+|.|++... ... ...+.+.......+.. ++  ..+.+|||||..+..           ...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~~   67 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITE-YKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR-----------AIR   67 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-cCc-CCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence            6899999999999999999998873 222 2233344433333333 45  678899999965422           111


Q ss_pred             HhhcCCccEEEEEEeCCCC-CCHH--HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSR-FSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~-~~~~--~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......++.+++++|.... .+..  ...+...+......  ..|+++++||+|+..
T Consensus        68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~  122 (161)
T TIGR00231        68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD  122 (161)
T ss_pred             HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence            1223344567777766423 1111  12334444443321  458999999999875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.53  E-value=1.7e-13  Score=115.44  Aligned_cols=120  Identities=16%  Similarity=0.179  Sum_probs=82.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcc------c------c--ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRA------F------K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (230)
                      ..+..+|+++|+.++|||||+++|++...      .      +  ......++|.......+.. ++..+.|+||||+.+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~  136 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD  136 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc
Confidence            34568999999999999999999974310      0      0  0112356777766655554 567899999999853


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                                 +...+......+|++++|+|+.+.....+...+..+... +.   +.+++++||+|+.+
T Consensus       137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi---p~iIvviNKiDlv~  191 (447)
T PLN03127        137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV---PSLVVFLNKVDVVD  191 (447)
T ss_pred             -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CeEEEEEEeeccCC
Confidence                       112222233468999999999877777777777766653 42   23678999999875

>PLN00023 GTP-binding protein; Provisional

Probab=99.53  E-value=2.2e-13  Score=108.56  Aligned_cols=122  Identities=19%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEee--------------CCeEEEEEeCCC
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK--------------DGQVVNVIDTPG   78 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~--------------~~~~~~liDtPG   78 (230)
                      +.....+|+++|..|||||||++.+++......    ...|....+  ..+.+.              ....+.||||+|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~----~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG   92 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIAR----PPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG   92 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccc----cCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence            344558999999999999999999997654211    111222211  112211              124688999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccceEEEEEeCC
Q 026970           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGG  147 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ivv~tk~  147 (230)
                      ...           +..+...++.+++++|+|+|++++-+... ..|++.+......          ....+++||.||+
T Consensus        93 qEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~  161 (334)
T PLN00023         93 HER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA  161 (334)
T ss_pred             Chh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence            643           22444566889999999999986544433 4566666654210          0135899999999


Q ss_pred             CCCC
Q 026970          148 DELE  151 (230)
Q Consensus       148 D~~~  151 (230)
                      |+..
T Consensus       162 DL~~  165 (334)
T PLN00023        162 DIAP  165 (334)
T ss_pred             cccc
Confidence            9864

>cd04135 Tc10 TC10 subfamily

Probab=99.53  E-value=2.3e-13  Score=100.91  Aligned_cols=113  Identities=19%  Similarity=0.099  Sum_probs=71.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|++|+|||||++++++.......    ..|....+ ..+.. ++  ..+.+|||||...+..           .
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~   64 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------L   64 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------c
Confidence            37999999999999999999977642111    11221111 12222 33  3577999999765332           1


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|++.+++-+...  ..++..+...   ....|+++|+||+|+..
T Consensus        65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~  118 (174)
T cd04135          65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRD  118 (174)
T ss_pred             ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhc
Confidence            1235678899999999975533332  2345555443   22458999999999764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.53  E-value=2.4e-13  Score=120.78  Aligned_cols=121  Identities=20%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (230)
                      ...-++|+++|+.++|||||+|+|++.......                ....++|.......+.+ ++..+.++||||+
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~   85 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH   85 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence            344589999999999999999999753321100                01246677766666665 7789999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      .++..           .....+..+|++++|+|+.+.....+...+..+.+. +    .|+++++||+|+...+
T Consensus        86 ~~~~~-----------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        86 VDFTV-----------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGAN  143 (689)
T ss_pred             cchhH-----------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCCC
Confidence            76321           122344566999999999877777776666665443 2    4789999999988543

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.53  E-value=2.1e-13  Score=113.68  Aligned_cols=118  Identities=16%  Similarity=0.184  Sum_probs=82.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      .+..+|+++|+.++|||||+++|++.....              ......+.|.......+.. ++..+.++||||+.  
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~--   86 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA--   86 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH--
Confidence            345899999999999999999998732100              0111456666665554443 56789999999963  


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE-EEEEeCCCCCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM-IVVFTGGDELE  151 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivv~tk~D~~~  151 (230)
                               .+...+......+|++++|+|+.......+...+..+... +    .|. ++++||+|+..
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~  142 (396)
T PRK00049         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVD  142 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcc
Confidence                     2334444455788999999999877777777777766653 4    244 56899999874

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.53  E-value=1.7e-13  Score=118.87  Aligned_cols=115  Identities=21%  Similarity=0.326  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc-ccc-------------cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA-FKS-------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~-~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (230)
                      ++|+++|+.++|||||+++|+.... +..             .....++|.......+.+ ++..+.+|||||+.++.  
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~--   78 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG--   78 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence            6899999999999999999985421 100             011346677776666665 78899999999986532  


Q ss_pred             cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                               ..+...+..+|++++|+|+.+........++..+... +    .|+++|+||+|+..
T Consensus        79 ---------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~  130 (594)
T TIGR01394        79 ---------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G----LKPIVVINKIDRPS  130 (594)
T ss_pred             ---------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCC
Confidence                     2233445567999999999867766666666666552 2    36899999999864

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.53  E-value=3.1e-13  Score=112.67  Aligned_cols=119  Identities=14%  Similarity=0.208  Sum_probs=82.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      .+..+|+++|+.++|||||+++|++.....              ......+.|.......+.. ++..+.++||||+.  
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~--   86 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA--   86 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH--
Confidence            445899999999999999999998742100              0111456676665444443 56789999999963  


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                               ++...+......+|++++|+|+.......+...+..+... +.   +++++++||+|+..
T Consensus        87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~~  142 (394)
T PRK12736         87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYLVVFLNKVDLVD  142 (394)
T ss_pred             ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CEEEEEEEecCCcc
Confidence                     2222333344577999999999877777777777766553 42   24788999999874

>cd04167 Snu114p Snu114p subfamily

Probab=99.52  E-value=1.3e-13  Score=105.83  Aligned_cols=115  Identities=20%  Similarity=0.248  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccccc-----------------CCCCccceeeeeEEEEee----CCeEEEEEeCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG   78 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG   78 (230)
                      ++|+++|+.|+|||||+++|++.......                 ....+++.......+.+.    ....+.+|||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            46899999999999999999865432110                 011223332222222221    236789999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ..++.           ......+..+|++++|+|+.+........++..+...     ..|+++|+||+|+.
T Consensus        81 ~~~f~-----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNFM-----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE-----GLPIVLVINKIDRL  136 (213)
T ss_pred             CcchH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence            87532           2223344577999999999866665554444443321     24899999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.52  E-value=7.3e-14  Score=98.48  Aligned_cols=114  Identities=23%  Similarity=0.288  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+|+|++|+|||||+++|.+...      ...-|....+.     +    .+|||||-+-.       ...+.+.+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~-----~----~~IDTPGEyiE-------~~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYY-----D----NTIDTPGEYIE-------NPRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEec-----c----cEEECChhhee-------CHHHHHHHHH
Confidence            5899999999999999999998753      11113333222     2    36999996521       2345555555


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC--CCChhhHHHHhcc
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL--EDNDETLEDYLGR  163 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~--~~~~~~~~~~l~~  163 (230)
                      ....+|+|++|.|++++...-...+.    ..|    .+|+|-|+||+|+.  ..+-+...++|+.
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~  117 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPGFA----SMF----NKPVIGVITKIDLPSDDANIERAKKWLKN  117 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCchhh----ccc----CCCEEEEEECccCccchhhHHHHHHHHHH
Confidence            56688999999999855432222222    222    35899999999998  3223344445553

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.52  E-value=2.3e-13  Score=100.99  Aligned_cols=114  Identities=18%  Similarity=0.106  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|++|||||||++++++......    ...|....+ ..+... ....+.+|||||.....           ...
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEV----YVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-----------RLR   66 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccccceEEEEEECCEEEEEEEEeCCCchhhh-----------hcc
Confidence            5899999999999999999998654211    111222111 122221 12367899999975321           111


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+.++|++++|++++++-+...  ..++..+....   ...|+++|+||+|+..
T Consensus        67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~  119 (175)
T cd01870          67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRN  119 (175)
T ss_pred             ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhccc
Confidence            234578899999999985433222  23444444432   2358999999999764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.52  E-value=2.5e-13  Score=107.04  Aligned_cols=124  Identities=21%  Similarity=0.185  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      -|+++|-|++||||||+.++....  .....+.+|..+....+....+..+++-|.||+.+..+....+..+|.+.+..|
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            368999999999999999998875  333456677777777666556678999999999988777777888888888887


Q ss_pred             cCCccEEEEEEeCCCCCC----HHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFS----QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~----~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          .++++|+|++ ...    .++ ..+...|..+-..-..+|.++|+||+|...
T Consensus       239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~  289 (369)
T COG0536         239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL  289 (369)
T ss_pred             ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence                4899999987 222    223 333444555433445678999999999654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.52  E-value=2.4e-13  Score=113.44  Aligned_cols=119  Identities=16%  Similarity=0.235  Sum_probs=81.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc------c----c----ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA------F----K----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~------~----~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      .+..+|+++|+.++|||||+++|++...      +    .    ......++|.......+.. .+..+.|+||||+.+ 
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~-   87 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD-   87 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH-
Confidence            4558999999999999999999985311      0    0    0111356677665554443 567899999999743 


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                                +...+......+|++++|+|+.+.....+...+..+... +   .+++++++||+|+.+
T Consensus        88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g---i~~iIvvvNK~Dl~~  142 (394)
T TIGR00485        88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-G---VPYIVVFLNKCDMVD  142 (394)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCEEEEEEEecccCC
Confidence                      222223334577999999999877777777777666543 3   234667899999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.52  E-value=1.8e-13  Score=101.48  Aligned_cols=113  Identities=22%  Similarity=0.138  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|++|+|||||++++++..... ..   ..|....+ ..+.. ++  ..+.+|||||.....           ..
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~-~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~   64 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPT-EY---VPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFD-----------KL   64 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-CC---CCceeeeeeEEEEE-CCEEEEEEEEECCCChhhc-----------cc
Confidence            378999999999999999998765321 11   11221111 12222 23  467899999975422           11


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++.++|++++|+|++++-+...  ..++..+....   ...|+++|+||+|+..
T Consensus        65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~  118 (173)
T cd04130          65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRT  118 (173)
T ss_pred             cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhcc
Confidence            2245678899999999985544333  34555555432   1358999999999864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PRK00007 elongation factor G; Reviewed

Probab=99.51  E-value=2.2e-13  Score=120.90  Aligned_cols=121  Identities=19%  Similarity=0.252  Sum_probs=86.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccc---cc--c-----------CCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAF---KS--R-----------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~---~~--~-----------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (230)
                      ...-++|+++|+.++|||||+++|+.....   ..  .           ....++|.......+.+ .+..+.|+||||+
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~   85 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH   85 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence            344589999999999999999999732210   00  0           02345677666666665 7889999999997


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      .++.       .+    +......+|++++|+|+.......+...+..+.+. +    .|.++++||+|....+
T Consensus        86 ~~f~-------~e----v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         86 VDFT-------IE----VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHH-------HH----HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCCC
Confidence            5421       12    23344556999999999878888888888776664 3    3688999999988643

>PLN03126 Elongation factor Tu; Provisional

Probab=99.51  E-value=3.2e-13  Score=114.41  Aligned_cols=120  Identities=15%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (230)
                      ..+..+|+++|+.++|||||+++|++.....              ......++|.+.....+.. ++..+.++||||+.+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~  156 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD  156 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence            3556899999999999999999998632110              1122345666655555554 677899999999742


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                                 +...+......+|++++|+|+.+.....+...+..+... +.   +++++++||+|+..
T Consensus       157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~  211 (478)
T PLN03126        157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVD  211 (478)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccC
Confidence                       223333444577999999999877777777777655543 42   24888999999875

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=2.5e-13  Score=112.70  Aligned_cols=180  Identities=18%  Similarity=0.237  Sum_probs=120.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      +.++.|-++|+-..|||||+.+|-+..+  .....+++|.....+.+..++|..++|.||||+..|           ...
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF-----------~aM  217 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF-----------SAM  217 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcHHHH-----------HHH
Confidence            3558999999999999999999988876  334567899999988888889999999999997532           222


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL  176 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~  176 (230)
                      -.......|.+++|+.+++..-+...+.+++.+..     ..|+++.+||+|+...+.+.+..               +|
T Consensus       218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~pekv~~---------------eL  277 (683)
T KOG1145|consen  218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANPEKVKR---------------EL  277 (683)
T ss_pred             HhccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCHHHHHH---------------HH
Confidence            23444556899999999989988877777766553     46899999999987544332222               23


Q ss_pred             HhHHHHHHHcCC-CcHHHHHHHHHHHHHhHHHHHHHHHHHHhchhccccccccC
Q 026970          177 RDQQFEVDSLKG-YSKREISELKEQMHKSYEDQLKRITEMCAGTCNDILNCETW  229 (230)
Q Consensus       177 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (230)
                      ..+.-++++.|| ...-.+..++-+-...+++.+--+.+.++-+.......|+|
T Consensus       278 ~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~  331 (683)
T KOG1145|consen  278 LSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGW  331 (683)
T ss_pred             HHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEE
Confidence            234445566555 22112223333333334444555555555555554444444

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=4e-12  Score=88.44  Aligned_cols=115  Identities=18%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|..|+|||.|++.++..-+++.    .+.|....+  ..+... ...++.+|||+|.           ++++..
T Consensus         8 fkivlvgnagvgktclvrrftqglfppg----qgatigvdfmiktvev~gekiklqiwdtagq-----------erfrsi   72 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPG----QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ-----------ERFRSI   72 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCC----CCceeeeeEEEEEEEECCeEEEEEEeeccch-----------HHHHHH
Confidence            7899999999999999999986654332    233433322  223321 3357899999995           455566


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+++.+|++++|+|++...+.. ...|+..+.++....  .-.|+|.||.|+.+
T Consensus        73 tqsyyrsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~d  126 (213)
T KOG0095|consen   73 TQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLAD  126 (213)
T ss_pred             HHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhh
Confidence            677888999999999998554443 367888887764432  24679999999875

>PRK12739 elongation factor G; Reviewed

Probab=99.50  E-value=5.6e-13  Score=118.44  Aligned_cols=119  Identities=22%  Similarity=0.307  Sum_probs=86.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (230)
                      ...++|+++|+.++|||||+++|+.......                .....++|.......+.+ ++..+.++||||+.
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~   84 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV   84 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence            3458999999999999999999975321100                012446777776666666 78899999999975


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ++           ..........+|++++|+|+.+.....+...+..+.+. +    .|.++++||+|+...
T Consensus        85 ~f-----------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 DF-----------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA  140 (691)
T ss_pred             HH-----------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence            31           12233444566999999999878887777777766553 3    378899999999864

>PRK10218 GTP-binding protein; Provisional

Probab=99.50  E-value=7.4e-13  Score=114.93  Aligned_cols=117  Identities=21%  Similarity=0.276  Sum_probs=82.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc-cccc-------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      -++|+++|+.++|||||+++|+.... +...             ....++|.......+.+ ++..+.+|||||+.++. 
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~-   82 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG-   82 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH-
Confidence            47999999999999999999996422 1110             11345566665555655 77899999999987643 


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                                ......+..+|++++|+|+.+.....+...+..+... +    .|.++++||+|....
T Consensus        83 ----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~a  135 (607)
T PRK10218         83 ----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPGA  135 (607)
T ss_pred             ----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCCC
Confidence                      2233455678999999999877666666666655442 3    367999999998643

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=5e-13  Score=98.63  Aligned_cols=121  Identities=18%  Similarity=0.136  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      +.....+|+++|.+|||||+++-++....+.....  ..+-.+.....+.. ++  ..+++|||.|..           .
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~--sTiGIDFk~kti~l-~g~~i~lQiWDtaGQe-----------r   73 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI--STIGIDFKIKTIEL-DGKKIKLQIWDTAGQE-----------R   73 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCcc--ceEEEEEEEEEEEe-CCeEEEEEEEEcccch-----------h
Confidence            33455899999999999999999988665422222  22222333333333 33  478899999953           4


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +......++++++++++|+|+++.-+.+. ..|++.+.+....  ..+.++|+||+|...
T Consensus        74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~  131 (207)
T KOG0078|consen   74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEE  131 (207)
T ss_pred             HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccc
Confidence            45667778899999999999975544443 6788888887443  458999999999875

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.50  E-value=3.2e-13  Score=114.72  Aligned_cols=121  Identities=12%  Similarity=0.154  Sum_probs=81.6

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------------------------CCCCccceeeeeEEE
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRT   63 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~   63 (230)
                      ......+|+++|+.++|||||++.|+........                               ....++|....+..+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            3466699999999999999999999765421110                               012345666665555


Q ss_pred             EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 026970           64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (230)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv  143 (230)
                      .+ ++..+.|+||||+.+           +...+......+|++++|+|+...+...+...+..+.. ++.   ++++++
T Consensus       103 ~~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iIvv  166 (474)
T PRK05124        103 ST-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLVVA  166 (474)
T ss_pred             cc-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceEEE
Confidence            54 667899999999632           22222233467899999999986665555444443333 342   478999


Q ss_pred             EeCCCCCC
Q 026970          144 FTGGDELE  151 (230)
Q Consensus       144 ~tk~D~~~  151 (230)
                      +||+|+..
T Consensus       167 vNKiD~~~  174 (474)
T PRK05124        167 VNKMDLVD  174 (474)
T ss_pred             EEeecccc
Confidence            99999874

>TIGR00503 prfC peptide chain release factor 3

Probab=99.49  E-value=6.5e-13  Score=113.90  Aligned_cols=124  Identities=16%  Similarity=0.182  Sum_probs=81.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc--c-C-----------------CCCccceeeeeEEEEeeCCeEEEEEeC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--R-A-----------------SSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~--~-~-----------------~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (230)
                      ...++|+++|+.++|||||+++|+.......  + .                 ...+++.......+.+ ++..+.++||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence            4558999999999999999999863221100  0 0                 0123444444455554 6789999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhh
Q 026970           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET  156 (230)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~  156 (230)
                      ||+.++.           .....++..+|++++|+|+.+.+......+++.+...     ..|+++++||+|+...+...
T Consensus        88 PG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~~~~~~~  151 (527)
T TIGR00503        88 PGHEDFS-----------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR-----DTPIFTFMNKLDRDIRDPLE  151 (527)
T ss_pred             CChhhHH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccCCCHHH
Confidence            9985432           2223344567999999999877776666666544331     34899999999986433333


Q ss_pred             H
Q 026970          157 L  157 (230)
Q Consensus       157 ~  157 (230)
                      +
T Consensus       152 l  152 (527)
T TIGR00503       152 L  152 (527)
T ss_pred             H
Confidence            3

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.49  E-value=5.8e-14  Score=115.28  Aligned_cols=134  Identities=21%  Similarity=0.232  Sum_probs=88.1

Q ss_pred             CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 026970           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG   90 (230)
Q Consensus        11 ~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~   90 (230)
                      .+++..++.++++|+|.+++|||||+|.++..+.   ...+...|+..-+.........+|+++||||+.+.......+.
T Consensus       160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I  236 (620)
T KOG1490|consen  160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII  236 (620)
T ss_pred             cCCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence            3566677889999999999999999999987764   2333344444433333333667899999999998543322211


Q ss_pred             HHHHHHHHhhcCCccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           91 KEIVKCIGMAKDGIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~d~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                       ++... .....--.+|||++|.+..  .+... ..++..++.+|..   +++|+|+||+|.+.+
T Consensus       237 -EmqsI-TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~  296 (620)
T KOG1490|consen  237 -EMQII-TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRP  296 (620)
T ss_pred             -HHHHH-HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCc
Confidence             12111 1111122479999999744  33333 5667777777763   489999999999864

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.49  E-value=6.9e-13  Score=102.14  Aligned_cols=115  Identities=19%  Similarity=0.255  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCccceeeeeEEEEeeCCeEE
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDGQVV   71 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~   71 (230)
                      +|+++|+.++|||||+.+|+.....                             .......++|.......+.+ .+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            4899999999999999999643210                             00111345666666666665 78899


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                      .++||||+.++           ...+......+|++++|+|+.+.       ........+.... .++   .+|+++++
T Consensus        80 ~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~iiivv  144 (219)
T cd01883          80 TILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG---VKQLIVAV  144 (219)
T ss_pred             EEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC---CCeEEEEE
Confidence            99999996431           12222344568999999999753       2222333333332 223   24799999


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||+|+..
T Consensus       145 NK~Dl~~  151 (219)
T cd01883         145 NKMDDVT  151 (219)
T ss_pred             Ecccccc
Confidence            9999874

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.48  E-value=8.6e-13  Score=98.08  Aligned_cols=116  Identities=14%  Similarity=0.131  Sum_probs=79.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|..||||||+++.|.......     ..+|.......+.. .+..+.++|.+|-...           ...
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~-----------~~~   74 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQESF-----------RPL   74 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGGG-----------GGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccccc-----------ccc
Confidence            456899999999999999999998754322     22244455555554 7789999999995422           134


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|+++||+|..+.-  ......+.+.+.+...  ...|+++++||.|...
T Consensus        75 w~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~  129 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPD  129 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred             ceeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccC
Confidence            446678899999999997432  1223333444444322  3469999999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.48  E-value=7.8e-13  Score=113.39  Aligned_cols=120  Identities=15%  Similarity=0.186  Sum_probs=79.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc--cc------------------CCCCccceeeeeEEEEeeCCeEEEEEeC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--SR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~--~~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (230)
                      ...++|+++|+.|+|||||+++|+......  .+                  ....+++.......+.+ ++..+.+|||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence            455899999999999999999996322100  00                  00123344444444554 6789999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ||+.++.           ......+..+|++++|+|+.+........+++.....     ..|+++++||+|....+
T Consensus        87 PG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         87 PGHEDFS-----------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-----DTPIFTFINKLDRDGRE  147 (526)
T ss_pred             CCchhhH-----------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCcccccC
Confidence            9986532           1122334567999999999877766666666544332     34899999999987544

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.47  E-value=7.1e-13  Score=115.03  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-----CC------------eEEEEEeCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DG------------QVVNVIDTPGLF   80 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----~~------------~~~~liDtPG~~   80 (230)
                      .++.|+++|++++|||||+|+|.+.....  ....++|...........     .+            ..+.||||||+.
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            34789999999999999999998875422  222333333222211110     00            127899999975


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ++.           ......+..+|++++|+|+++.+...+...+..+...     ..|+++++||+|+.
T Consensus        83 ~f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~  136 (586)
T PRK04004         83 AFT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-----KTPFVVAANKIDRI  136 (586)
T ss_pred             HHH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence            432           2222344678999999999877777776666655442     34799999999985

>PRK09866 hypothetical protein; Provisional

Probab=99.47  E-value=1.6e-12  Score=110.93  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=58.4

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      ..++|+||||+..+..  ..+.+.+.+    ....+|+|+||+|++...+..+...++.+.+. ++  ..|+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEccc
Confidence            4689999999975431  223333333    45677999999999866788888888777764 32  138999999999


Q ss_pred             CCCCC---hhhHHHHhc
Q 026970          149 ELEDN---DETLEDYLG  162 (230)
Q Consensus       149 ~~~~~---~~~~~~~l~  162 (230)
                      ..+..   .+.+.++++
T Consensus       301 l~dreeddkE~Lle~V~  317 (741)
T PRK09866        301 QQDRNSDDADQVRALIS  317 (741)
T ss_pred             CCCcccchHHHHHHHHH
Confidence            86422   244555543

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.47  E-value=4.8e-13  Score=101.35  Aligned_cols=109  Identities=17%  Similarity=0.068  Sum_probs=71.0

Q ss_pred             EcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE--EEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970           25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (230)
Q Consensus        25 iG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (230)
                      +|..|||||||+++++..... .   ....|....+..  +.. .....+.||||||...+           ......++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~-~---~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-----------~~l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFE-K---KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-----------GGLRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCC-C---CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHHHh
Confidence            599999999999999865431 1   112233322222  221 12357899999996432           23334567


Q ss_pred             CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .++|++++|+|++++.+... ..|+..+.+...   ..|+++|+||+|+..
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~  113 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKD  113 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence            88999999999986654443 356666665432   358999999999753

Ran is involved in the active transport of proteins through nuclear pores.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.47  E-value=9.1e-13  Score=116.12  Aligned_cols=120  Identities=13%  Similarity=0.137  Sum_probs=80.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc--------------c-----------------CCCCccceeeeeEEEE
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R-----------------ASSSGVTSTCEMQRTV   64 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~--------------~-----------------~~~~~~t~~~~~~~~~   64 (230)
                      ..+..+|+++|++++|||||++.|+.......              +                 ....++|....+..+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            34558999999999999999999986543111              0                 0113455555555555


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                      + ++..+.|+||||+.+           +...+......+|++++|+|+.......+...+..+... +.   +++++++
T Consensus       101 ~-~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivvv  164 (632)
T PRK05506        101 T-PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLAV  164 (632)
T ss_pred             c-CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEEE
Confidence            4 677899999999632           222222345678999999999866665555555444432 42   4789999


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||+|+..
T Consensus       165 NK~D~~~  171 (632)
T PRK05506        165 NKMDLVD  171 (632)
T ss_pred             Eeccccc
Confidence            9999874

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.46  E-value=3.1e-13  Score=99.02  Aligned_cols=115  Identities=22%  Similarity=0.228  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +|+++|..|+|||||++.+.+........  ...........+.. ++  ..+.+||+||....        .   ....
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~--------~---~~~~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYI--PTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERF--------D---SLRD   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSE--TTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGG--------H---HHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccc--cccccccccccccc-cccccccccccccccccc--------c---cccc
Confidence            58999999999999999999775422111  11112222222222 23  36889999995421        1   2223


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|.+++-+... ..++..+.....  ...|+++|+||.|...
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~  118 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD  118 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccc
Confidence            45677899999999975433222 456666666544  2358999999999775

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.46  E-value=6.4e-13  Score=95.38  Aligned_cols=114  Identities=21%  Similarity=0.204  Sum_probs=68.8

Q ss_pred             EEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        24 liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      ++|++|+|||||+|++++......   ....|. .........   .+..+.++||||.....           ......
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence            589999999999999998764211   111222 222222221   25678999999976422           111345


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .+.+|++++|+|+.........................|+++|+||+|....
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~  117 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE  117 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence            5778999999999844333332221011111122335689999999998763

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=7.7e-13  Score=108.68  Aligned_cols=130  Identities=19%  Similarity=0.223  Sum_probs=87.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC-CCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD-FSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~-~~~~~~~~~~~~~~~   96 (230)
                      .++.|+++|+|++|||||+|+|+..+...+.+ .+++|.+.-...+. .+|.++.++||+|+-+ .....+.+  -+..+
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~~iE~~--gI~rA  342 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVT-VNGVPVRLSDTAGIREESNDGIEAL--GIERA  342 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEee-cCCeEEEEEeccccccccCChhHHH--hHHHH
Confidence            44899999999999999999999988744432 45566666555555 4999999999999987 22222221  12222


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh-ccccc------ceEEEEEeCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF-GKKIF------DYMIVVFTGGDELED  152 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~-~~~~~------~~~ivv~tk~D~~~~  152 (230)
                       ......+|++++|+|+....+..+....+.+...- |-...      .+++++.||.|...+
T Consensus       343 -~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  343 -RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             -HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence             23345779999999996555555544444443321 11122      589999999998864

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.46  E-value=8.2e-13  Score=97.26  Aligned_cols=120  Identities=16%  Similarity=0.240  Sum_probs=68.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE-EEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...|+|+|++|+|||+|+..|.......+..+     ....... +....+..+.+||+||+..-.       ..+...+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS-----~e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~   70 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS-----MENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL   70 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc-----ccCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence            46899999999999999999987643222111     1111111 111245689999999987533       2222221


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~~  152 (230)
                      . ..+.+.+|+||+|.. .+...-....+.|...+.    .....|++|+.||.|++..
T Consensus        71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            1 234567999999986 343444555555555443    2234589999999999863

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.46  E-value=8.4e-13  Score=112.85  Aligned_cols=118  Identities=24%  Similarity=0.317  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC--CcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~   97 (230)
                      .+|+++|.||+|||||+|+|+|.......  -+++|.+........ .+..+.++|.||.++...  .++.+..+   ++
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~---~l   77 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARD---FL   77 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHH---HH
Confidence            57999999999999999999999864443  467788887777765 777899999999997553  22323222   22


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .  ...+|+++-|+|++ .+..+-.-.++ +.+. |    .|+++++|.+|..+.
T Consensus        78 l--~~~~D~ivnVvDAt-nLeRnLyltlQ-LlE~-g----~p~ilaLNm~D~A~~  123 (653)
T COG0370          78 L--EGKPDLIVNVVDAT-NLERNLYLTLQ-LLEL-G----IPMILALNMIDEAKK  123 (653)
T ss_pred             h--cCCCCEEEEEcccc-hHHHHHHHHHH-HHHc-C----CCeEEEeccHhhHHh
Confidence            1  35789999999998 55544444443 3332 3    379999999998764

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.46  E-value=1.6e-12  Score=99.85  Aligned_cols=117  Identities=20%  Similarity=0.097  Sum_probs=70.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ....+|+++|++|||||||++.++.......    ...|....+.....   .....+.++||||...+.          
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~----------   72 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKK----YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG----------   72 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEEECCeEEEEEEEECCCchhhh----------
Confidence            4458999999999999999976544332111    11222222222211   123578899999964321          


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       .....++..++++++|+|++++.+... ..++..+.+...   ..|+++|+||+|+..
T Consensus        73 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         73 -GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVKD  127 (215)
T ss_pred             -hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCcc
Confidence             122234567799999999985554333 344444444322   347889999999753

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.46  E-value=1.2e-12  Score=109.44  Aligned_cols=116  Identities=14%  Similarity=0.160  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccc-------------------------------cCCCCccceeeeeEEEEeeCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKS-------------------------------RASSSGVTSTCEMQRTVLKDG   68 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~   68 (230)
                      ++|+++|+.++|||||++.|+.......                               .....++|.+..+..+.+ ++
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            4799999999999999999974432110                               011235566666666655 67


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      ..+.|+||||+.+           +...+......+|++++|+|+.......+...+..+.. ++   .+++++++||+|
T Consensus        80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~---~~~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LG---IRHVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cC---CCcEEEEEEecc
Confidence            7999999999642           22223334567899999999987776666555554444 34   236899999999


Q ss_pred             CCC
Q 026970          149 ELE  151 (230)
Q Consensus       149 ~~~  151 (230)
                      ...
T Consensus       145 ~~~  147 (406)
T TIGR02034       145 LVD  147 (406)
T ss_pred             ccc
Confidence            874

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04129 Rho2 Rho2 subfamily

Probab=99.46  E-value=1.5e-12  Score=97.81  Aligned_cols=113  Identities=19%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|++|+|||||++.++....... .   ..|....+. .+.. ++  ..+.++||||.......           
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~-----------   65 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-Y---HPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERL-----------   65 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-c---CCcccceEEEEEEE-CCEEEEEEEEECCCChhcccc-----------
Confidence            5899999999999999999985543211 1   112211111 2222 22  35789999997543211           


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++++++++.-+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~  119 (187)
T cd04129          66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQ  119 (187)
T ss_pred             chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhh
Confidence            1123467899999999974433222  245666655432   368999999999753

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.45  E-value=5.7e-12  Score=91.05  Aligned_cols=131  Identities=17%  Similarity=0.211  Sum_probs=95.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccc-----cCCCCc---cceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV   89 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~   89 (230)
                      ...+|+++|+.++||||++..+........     ..+..+   +|....+.......+..+.+++|||+..        
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R--------   80 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER--------   80 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH--------
Confidence            346899999999999999999987653211     222333   6666677777765668999999999754        


Q ss_pred             HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC-hhhHHHHhcc
Q 026970           90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR  163 (230)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~  163 (230)
                         +.-.+....+++.++++++|.+...+.+....++++.....    .|++|.+||.|+.... ++.+.++++.
T Consensus        81 ---F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~  148 (187)
T COG2229          81 ---FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL  148 (187)
T ss_pred             ---HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence               23344456677889999999886777666777777666532    5899999999998644 4567777764

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.45  E-value=1.2e-12  Score=113.89  Aligned_cols=117  Identities=22%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccc------cC-------CCCccceeeeeEEEEee--C--CeEEEEEeCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS------RA-------SSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD   81 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~------~~-------~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~~   81 (230)
                      .++|+++|+.++|||||+++|+.......      ..       ...++|.......+.+.  +  ...+.||||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            47999999999999999999986532101      00       12355655544444332  2  25789999999865


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.           .....++..+|++++|+|+++..+..+...+....+   .  ..|+++|+||+|+..
T Consensus        83 F~-----------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~~  136 (595)
T TIGR01393        83 FS-----------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N--DLEIIPVINKIDLPS  136 (595)
T ss_pred             HH-----------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c--CCCEEEEEECcCCCc
Confidence            32           223344567799999999987776655443333222   1  237999999999864

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.45  E-value=3.5e-12  Score=98.22  Aligned_cols=117  Identities=21%  Similarity=0.137  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccC------------CCCccceeeee--E---------------------EEEe
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRA------------SSSGVTSTCEM--Q---------------------RTVL   65 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~------------~~~~~t~~~~~--~---------------------~~~~   65 (230)
                      +|+++|+.++|||||++.++.........            ...+.|.....  .                     ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            57899999999999999998533211000            00111110000  0                     0111


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (230)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t  145 (230)
                      ..+..+.++||||+.++       ...+...+..  ..+|++++|+|+...+...+...+.++... +    .|+++|+|
T Consensus        81 ~~~~~i~liDtpG~~~~-------~~~~~~~~~~--~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivvvN  146 (224)
T cd04165          81 KSSKLVTFIDLAGHERY-------LKTTLFGLTG--YAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVVVT  146 (224)
T ss_pred             eCCcEEEEEECCCcHHH-------HHHHHHhhcc--cCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEE
Confidence            24678999999997431       1222222211  357999999999878888888888877664 3    37899999


Q ss_pred             CCCCCC
Q 026970          146 GGDELE  151 (230)
Q Consensus       146 k~D~~~  151 (230)
                      |+|+.+
T Consensus       147 K~D~~~  152 (224)
T cd04165         147 KIDLAP  152 (224)
T ss_pred             CccccC
Confidence            999875

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.45  E-value=1.8e-12  Score=109.41  Aligned_cols=119  Identities=20%  Similarity=0.269  Sum_probs=78.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCccceeeeeEEEEeeC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKD   67 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~   67 (230)
                      .+..+|+++|+.++|||||++.|+.......                             .....++|.+.....+.. .
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~   83 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D   83 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence            4558999999999999999999985321000                             011346677766666654 6


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                      +..+.||||||+.+           +...+...+..+|++++|+|++++   ........+.. .+.++   ..++++|+
T Consensus        84 ~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~-~~~~~---~~~iIVvi  148 (426)
T TIGR00483        84 KYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFL-ARTLG---INQLIVAI  148 (426)
T ss_pred             CeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHH-HHHcC---CCeEEEEE
Confidence            77899999999632           223333445678999999999865   22222222222 23333   24799999


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||+|+..
T Consensus       149 NK~Dl~~  155 (426)
T TIGR00483       149 NKMDSVN  155 (426)
T ss_pred             EChhccC
Confidence            9999874

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.44  E-value=2.1e-12  Score=94.36  Aligned_cols=109  Identities=22%  Similarity=0.159  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++.++....... ..   ++.......+.. ++  ..+.+|||+|...     .          
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~---~~~~~~~~~i~~-~~~~~~l~i~D~~g~~~-----~----------   60 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ES---PEGGRFKKEVLV-DGQSHLLLIRDEGGAPD-----A----------   60 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCC-CC---CCccceEEEEEE-CCEEEEEEEEECCCCCc-----h----------
Confidence            3789999999999999998876543211 11   111111122222 44  4588999999742     0          


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                       ..+..+|++++|+|.+++-+... ..++..+..... ....|+++|.||.|+.
T Consensus        61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~  112 (158)
T cd04103          61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS  112 (158)
T ss_pred             -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence             13356799999999987665555 456666655422 1235899999998864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PRK13351 elongation factor G; Reviewed

Probab=99.44  E-value=1.5e-12  Score=115.93  Aligned_cols=120  Identities=18%  Similarity=0.230  Sum_probs=82.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (230)
                      ...++|+++|+.|+|||||+++|+........                ....++|.......+.+ .+..+.+|||||..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~   84 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI   84 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence            34589999999999999999999753211000                00234455555555555 67899999999986


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ++.           ......+..+|++++|+|+++.........+..+...     ..|+++++||+|+...+
T Consensus        85 df~-----------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~~  141 (687)
T PRK13351         85 DFT-----------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGAD  141 (687)
T ss_pred             HHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCCC
Confidence            422           2233455677999999999877776666666555442     24789999999988643

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.44  E-value=2.4e-12  Score=104.71  Aligned_cols=117  Identities=20%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCc---cceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      .+.+|+|+|.+|+|||||||+|.|...-..+....|   +|.....+..  ++...+++||.||.+.+......    +.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~~~~----Yl  107 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFPPEE----YL  107 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHH----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCCHHH----HH
Confidence            458999999999999999999987543222222222   3444444433  35567999999999865443332    22


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~  149 (230)
                      +.  ..+...|.+|++. .+ +++..+..+.+.+.+. |    +++++|-||.|.
T Consensus       108 ~~--~~~~~yD~fiii~-s~-rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~  153 (376)
T PF05049_consen  108 KE--VKFYRYDFFIIIS-SE-RFTENDVQLAKEIQRM-G----KKFYFVRTKVDS  153 (376)
T ss_dssp             HH--TTGGG-SEEEEEE-SS-S--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred             HH--ccccccCEEEEEe-CC-CCchhhHHHHHHHHHc-C----CcEEEEEecccc
Confidence            22  1233557766654 34 8999999998888885 4    379999999985

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.41  E-value=3.8e-12  Score=96.18  Aligned_cols=117  Identities=18%  Similarity=0.033  Sum_probs=71.0

Q ss_pred             CeEEEEEcCCCCcHHHHHH-HHhCCcccccc-CCCCcccee--eeeE-E--------EEe-eCCeEEEEEeCCCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGN-SILGRRAFKSR-ASSSGVTST--CEMQ-R--------TVL-KDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin-~l~~~~~~~~~-~~~~~~t~~--~~~~-~--------~~~-~~~~~~~liDtPG~~~~~~   84 (230)
                      ..+|+++|.+|||||||+. .+.+....... ......|..  ..+. .        ... .....+.+|||+|....  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            3689999999999999996 55443221000 011112221  0110 0        011 12347889999997421  


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                                 ....+++++|++++|+|++++.+....  .|+..+.....   ..|+++|+||+|+..
T Consensus        80 -----------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~  134 (195)
T cd01873          80 -----------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRY  134 (195)
T ss_pred             -----------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence                       112367899999999999866555443  36666665432   348999999999754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.41  E-value=3.8e-12  Score=110.90  Aligned_cols=118  Identities=20%  Similarity=0.222  Sum_probs=77.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEEee----CCeEEEEEeCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLF   80 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~~   80 (230)
                      ..++|+++|+.++|||||+.+|+........             ....++|.......+.+.    .+..+.||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            4479999999999999999999764321000             112355555444434332    24678999999987


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++.           ..+..++..+|++++|+|+++.....+...+..+...     ..|+++|+||+|+..
T Consensus        86 dF~-----------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~-----~lpiIvViNKiDl~~  140 (600)
T PRK05433         86 DFS-----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----DLEIIPVLNKIDLPA  140 (600)
T ss_pred             HHH-----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEEEECCCCCc
Confidence            532           2223345567999999999877766554444333221     247999999999864

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=2.6e-11  Score=84.21  Aligned_cols=122  Identities=11%  Similarity=0.077  Sum_probs=79.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .-..+++++|.+.+|||||+.+.++......-.+.-++....  ..+.. .....+++|||.|...           ++.
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKv--KTvyr~~kRiklQiwDTagqEr-----------yrt   85 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV--KTVYRSDKRIKLQIWDTAGQER-----------YRT   85 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEE--eEeeecccEEEEEEEecccchh-----------hhH
Confidence            344699999999999999999999876533222222222222  22211 1335789999999642           334


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ....++++++++|+++|.++.-+... ..+...++...-.  ..++|+|.||||+-.+.
T Consensus        86 iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~--naqvilvgnKCDmd~eR  142 (193)
T KOG0093|consen   86 ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD--NAQVILVGNKCDMDSER  142 (193)
T ss_pred             HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc--CceEEEEecccCCccce
Confidence            44567889999999999975433332 4455555554322  34899999999987643

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.41  E-value=7.8e-12  Score=96.07  Aligned_cols=124  Identities=15%  Similarity=0.150  Sum_probs=75.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|+.|+||||..+.+.+...+. ....-+.|...+...+.......+.+||+||..+.....      +.......
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence            68999999999999999998765322 223345677777666655466799999999987643221      00111234


Q ss_pred             cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.+++++|||+|+. +.....-..+...+..........++.+++.|+|.+.
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~  125 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS  125 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence            57788999999996 3443333444444444443444568999999999986

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.40  E-value=6e-12  Score=106.25  Aligned_cols=117  Identities=18%  Similarity=0.221  Sum_probs=79.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCccceeeeeEEEEeeC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKD   67 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~   67 (230)
                      .+..+|+++|+.++|||||+..|+......                             ......++|.+..+..+.+ +
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~   83 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P   83 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence            455899999999999999999887522100                             0112346677766666654 6


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhcccccceE
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYM  140 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~  140 (230)
                      +..+.|+||||+.+           +...+......+|++++|+|+....       .......+..+.. +|.   +++
T Consensus        84 ~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~i  148 (446)
T PTZ00141         84 KYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQM  148 (446)
T ss_pred             CeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---CeE
Confidence            78999999999643           2333344456789999999997553       2344555554443 342   368


Q ss_pred             EEEEeCCCC
Q 026970          141 IVVFTGGDE  149 (230)
Q Consensus       141 ivv~tk~D~  149 (230)
                      ++++||+|.
T Consensus       149 iv~vNKmD~  157 (446)
T PTZ00141        149 IVCINKMDD  157 (446)
T ss_pred             EEEEEcccc
Confidence            899999995

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.39  E-value=2e-11  Score=93.98  Aligned_cols=116  Identities=18%  Similarity=0.111  Sum_probs=78.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEE-EeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT-VLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|..|+|||||++++.+.......    ..|....+... ....  ...+.+|||+|..           ++...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~-----------~~~~~   70 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY----PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE-----------EYRSL   70 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccC----CCceeeeeEEEEEEeCCCEEEEEeecCCCHH-----------HHHHH
Confidence            79999999999999999999987652221    11222222211 1111  3468899999964           34455


Q ss_pred             HHhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ...++.++++++++++...  +.......+...+....+  ...++++|.||+|+...
T Consensus        71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~  126 (219)
T COG1100          71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDE  126 (219)
T ss_pred             HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccc
Confidence            6677889999999999873  233333566666666543  23589999999999863

>cd01882 BMS1 Bms1

Probab=99.39  E-value=1.2e-11  Score=95.41  Aligned_cols=112  Identities=20%  Similarity=0.224  Sum_probs=73.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ..++..|+++|.+|+|||||+|.|++...........+ +    + .+....+..+.++||||..          ..+..
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~----i-~i~~~~~~~i~~vDtPg~~----------~~~l~   99 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P----I-TVVTGKKRRLTFIECPNDI----------NAMID   99 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c----E-EEEecCCceEEEEeCCchH----------HHHHH
Confidence            45568899999999999999999987532111111111 1    1 1111257789999999842          12222


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .    ...+|++++|+|+...+...+..++..+... +.   +.+++|+||+|...
T Consensus       100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~---p~vi~VvnK~D~~~  147 (225)
T cd01882         100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GF---PRVMGVLTHLDLFK  147 (225)
T ss_pred             H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC---CeEEEEEeccccCC
Confidence            2    3456999999999877777777776666553 32   23556999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.38  E-value=6.9e-12  Score=105.02  Aligned_cols=119  Identities=15%  Similarity=0.231  Sum_probs=73.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEEE--------------e-----------eCCeEE
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTV--------------L-----------KDGQVV   71 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~   71 (230)
                      +..+|+++|+.++|||||+++|++...... .....+.|....+....              .           ..+..+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            447999999999999999999987532110 01122333333221110              0           014679


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      .++||||+.+           +...+......+|++++|+|+++.. .......+..+. .++   .+++++++||+|+.
T Consensus        83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g---i~~iIVvvNK~Dl~  147 (406)
T TIGR03680        83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG---IKNIVIVQNKIDLV  147 (406)
T ss_pred             EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC---CCeEEEEEEccccC
Confidence            9999999632           2233333445679999999998655 444445554443 233   23689999999987


Q ss_pred             C
Q 026970          151 E  151 (230)
Q Consensus       151 ~  151 (230)
                      .
T Consensus       148 ~  148 (406)
T TIGR03680       148 S  148 (406)
T ss_pred             C
Confidence            5

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.38  E-value=1.7e-11  Score=86.71  Aligned_cols=114  Identities=17%  Similarity=0.221  Sum_probs=83.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|..|+||||+++.+.+...     ....+|...+.....+ ++..+.++|.-|.           ..++.+.+
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~W~   78 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSYWK   78 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHHHH
Confidence            58999999999999999999999863     2333466666666665 7889999998884           34557777


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                      .++...|++++|+|..++....+  ....+...+.  ..+-.+++++.||.|...
T Consensus        79 nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~  131 (185)
T KOG0073|consen   79 NYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPG  131 (185)
T ss_pred             HhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence            88888999999999976654433  2333333332  123358999999999863

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.38  E-value=9.5e-12  Score=104.19  Aligned_cols=122  Identities=16%  Similarity=0.239  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEee-------------------------CC
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK-------------------------DG   68 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~-------------------------~~   68 (230)
                      ...+..+|+++|+.++|||||+.+|++..... ......+.|....+....+.                         ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            34455899999999999999999997752110 11112344554432211110                         02


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      ..+.|+||||..+           +...+......+|++++|+|+++.. .......+..+.. .+   ..++++|+||+
T Consensus        85 ~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~  149 (411)
T PRK04000         85 RRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKI  149 (411)
T ss_pred             cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEee
Confidence            5789999999532           2223333345679999999998655 4555555554433 23   23689999999


Q ss_pred             CCCC
Q 026970          148 DELE  151 (230)
Q Consensus       148 D~~~  151 (230)
                      |+.+
T Consensus       150 Dl~~  153 (411)
T PRK04000        150 DLVS  153 (411)
T ss_pred             cccc
Confidence            9875

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.3e-11  Score=102.94  Aligned_cols=127  Identities=17%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .++.|.++|+-..|||||+..|-+.+.  ......++|++...+.+...  ....++|+||||+..|           ..
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~   70 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TA   70 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HH
Confidence            347999999999999999999988876  33456789999998888875  3478999999997532           22


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                      .-.....-+|.+++|+++++.+.+.....+..++.. +    .|+++.+||+|+.+.++..+..-+.
T Consensus        71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~----vP~iVAiNKiDk~~~np~~v~~el~  132 (509)
T COG0532          71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-G----VPIVVAINKIDKPEANPDKVKQELQ  132 (509)
T ss_pred             HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-C----CCEEEEEecccCCCCCHHHHHHHHH
Confidence            222344456899999999999999998888888774 3    4899999999999765554444333

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.37  E-value=3.6e-12  Score=91.86  Aligned_cols=120  Identities=15%  Similarity=0.116  Sum_probs=75.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccC---CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA---SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ...++|+++|.+|+|||||+|.+...++..--.   +....|+...+.    ..-..+++|||.|...+           
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd----~~~vtlQiWDTAGQERF-----------   71 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD----DRSVTLQIWDTAGQERF-----------   71 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc----CeEEEEEEEecccHHHh-----------
Confidence            344899999999999999999998876522111   111122222111    12236789999996433           


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                      ...-...++++|.+++|+|++..-+.+. ..|-+.+.....  .+..-|+||++||.|.-.
T Consensus        72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~  132 (210)
T KOG0394|consen   72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG  132 (210)
T ss_pred             hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence            3333467899999999999974433332 233333333222  223448999999999754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.36  E-value=1.2e-11  Score=107.82  Aligned_cols=113  Identities=20%  Similarity=0.240  Sum_probs=72.9

Q ss_pred             cCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCcc
Q 026970           26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH  105 (230)
Q Consensus        26 G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (230)
                      |.+|+|||||+|+|+|.... .+ ..+++|.+.....+.. ++..+.++||||..+......+  +.+.... .....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~-v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~-l~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT-VG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLE--EEVARDY-LLNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe-ec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchH--HHHHHHH-HhhcCCC
Confidence            89999999999999998642 22 2455666665555554 6678999999999875432211  1222211 1124689


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       106 ~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++++|+|+++ +... ......+.+     ...|+++|+||+|+.+
T Consensus        75 vvI~VvDat~-ler~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~  113 (591)
T TIGR00437        75 LVVNVVDASN-LERN-LYLTLQLLE-----LGIPMILALNLVDEAE  113 (591)
T ss_pred             EEEEEecCCc-chhh-HHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence            9999999983 3322 222222322     1358999999999864

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PTZ00416 elongation factor 2; Provisional

Probab=99.35  E-value=3.8e-12  Score=114.92  Aligned_cols=119  Identities=18%  Similarity=0.225  Sum_probs=81.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEee---------CCeEEE
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------DGQVVN   72 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~   72 (230)
                      ....++|+++|+.++|||||+++|++.......              ....++|.........+.         .+..+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            345679999999999999999999874321110              011233443322223321         146799


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ++||||+.++           ...+......+|++++|+|+...+...+...++.+.+.     ..|+++++||+|+.
T Consensus        96 liDtPG~~~f-----------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhH-----------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence            9999998652           23334556778999999999888888887777666553     24799999999997

>PTZ00258 GTP-binding protein; Provisional

Probab=99.35  E-value=1.1e-11  Score=101.94  Aligned_cols=93  Identities=18%  Similarity=0.200  Sum_probs=65.3

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGL   79 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~   79 (230)
                      .....+|+|+|.|++|||||+|+|++....  ....+++|..+....+...+.                ..+.++||||+
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL   95 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL   95 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence            345579999999999999999999988652  223456676666655544322                25899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      .........+...+...+    +.+|++++|+|+.
T Consensus        96 v~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f  126 (390)
T PTZ00258         96 VKGASEGEGLGNAFLSHI----RAVDGIYHVVRAF  126 (390)
T ss_pred             CcCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence            865444444555555444    4569999999973

>cd01900 YchF YchF subfamily

Probab=99.34  E-value=7.9e-12  Score=98.47  Aligned_cols=87  Identities=21%  Similarity=0.210  Sum_probs=60.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe----------------EEEEEeCCCCCCCCCC
Q 026970           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ----------------VVNVIDTPGLFDFSAG   85 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~~~   85 (230)
                      |+++|.++||||||+|+|++.... . ...+++|.......+...+.+                .+.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~-~-~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAE-A-ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCc-c-ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            589999999999999999998762 2 223556666655544443321                5899999999865544


Q ss_pred             cHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      ...+...+...+    ..+|++++|+++.
T Consensus        79 ~~glg~~fL~~i----~~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSHI----REVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHHH----HhCCEEEEEEeCc
Confidence            444555554443    4569999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.34  E-value=5.1e-12  Score=112.70  Aligned_cols=118  Identities=19%  Similarity=0.253  Sum_probs=77.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccc--------------cccCCCCccceeeeeEE----EEeeCCeEEEEEeCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQR----TVLKDGQVVNVIDTPG   78 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~----~~~~~~~~~~liDtPG   78 (230)
                      ...++|+++|+.++|||||+++|+.....              .......++|.......    .. ..+..+.++||||
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~-~~~~~i~liDTPG   95 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYE-GNEYLINLIDTPG   95 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeec-CCceEEEEEeCCC
Confidence            34589999999999999999999743110              00011133344333221    22 2567899999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.++.           ..+...+..+|++++|+|+.+.....+...+..+.+.     ..|.++++||+|...
T Consensus        96 ~~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence            97643           2223445667999999999877766666665554332     236789999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.33  E-value=1.1e-11  Score=112.22  Aligned_cols=120  Identities=18%  Similarity=0.230  Sum_probs=81.4

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEee--------------
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK--------------   66 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~--------------   66 (230)
                      ....-++|+++|+.++|||||+++|+........              ....++|.......+.+.              
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            3455689999999999999999999865421110              011234444333333321              


Q ss_pred             -CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970           67 -DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (230)
Q Consensus        67 -~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t  145 (230)
                       ++..+.++||||+.++.           ..+......+|++++|+|+.+.+...+...++.+...     ..|+++++|
T Consensus        95 ~~~~~inliDtPGh~dF~-----------~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iN  158 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN  158 (843)
T ss_pred             CCceEEEEECCCCHHHHH-----------HHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEE
Confidence             25678999999986532           2233444567999999999888887777777665553     247899999


Q ss_pred             CCCCC
Q 026970          146 GGDEL  150 (230)
Q Consensus       146 k~D~~  150 (230)
                      |+|+.
T Consensus       159 K~D~~  163 (843)
T PLN00116        159 KMDRC  163 (843)
T ss_pred             CCccc
Confidence            99997

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.32  E-value=3.2e-12  Score=89.77  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=96.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      -.++|+++|.--+|||||+-..+...+.....+............+. ...-.+.+|||+|...+           ...-
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQErf-----------HALG   79 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQERF-----------HALG   79 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccchHhh-----------hccC
Confidence            44899999999999999987776554321111111111111111111 12346889999996432           2333


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA  173 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~  173 (230)
                      ..+|++.+++|+|+|++++-+... +.|...++..+|..+  ..+||.||+|+-+...   +..+.|.+.....++...+
T Consensus        80 PIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSA  157 (218)
T KOG0088|consen   80 PIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSA  157 (218)
T ss_pred             ceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccc
Confidence            467889999999999987766554 678888999888664  6889999999865432   3345566654444444455


Q ss_pred             HHHHhHHHHHH
Q 026970          174 TKLRDQQFEVD  184 (230)
Q Consensus       174 ~~~~~~~~~~~  184 (230)
                      ++-.++.++++
T Consensus       158 k~N~Gi~elFe  168 (218)
T KOG0088|consen  158 KDNVGISELFE  168 (218)
T ss_pred             ccccCHHHHHH
Confidence            54445544443

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.32  E-value=1.7e-11  Score=99.69  Aligned_cols=89  Identities=20%  Similarity=0.188  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS   83 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~   83 (230)
                      .+|+++|.|++|||||+|+|++.... . ...+++|..+....+...+.                ..+.++||||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~-v-~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAE-A-ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCe-e-cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            58999999999999999999998742 1 22355666665544443232                258999999998654


Q ss_pred             CCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      .....+...+...+    ..+|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i----~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANI----REVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence            44444454444443    4669999999973

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=3.5e-11  Score=84.11  Aligned_cols=122  Identities=19%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-e--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-K--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+++++|+.|+|||.|+..+......+  .  .+.|....+..-.. .  ...++++|||+|.           +.++..
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkD--d--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQ-----------ErFRSV   74 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKD--D--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ-----------ERFRSV   74 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcc--c--ccceeeeeecceeeeecCcEEEEEEeecccH-----------HHHHHH
Confidence            689999999999999999888665421  1  12233333332111 1  2347899999994           556677


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHH
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE  158 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~  158 (230)
                      ...+++++.+.++|+|++++-+.+. ..|+.-.+....  ....++++.||.|+-.....+..
T Consensus        75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~Vtfl  135 (214)
T KOG0086|consen   75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFL  135 (214)
T ss_pred             HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHH
Confidence            7889999999999999986655443 344444444322  23357788899998764444433

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.30  E-value=2.9e-11  Score=85.53  Aligned_cols=123  Identities=15%  Similarity=0.071  Sum_probs=82.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..++++||.+-+|||+|+..++...........-++........+.-....++++|||+|.           +.++...+
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsitk   76 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSITK   76 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHHH
Confidence            4789999999999999999998776633222111111111111121112247899999995           45556667


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .++++.-++++|+|.+++-+.+. ..|++.-....+.+...-+.+|.+|+|+...
T Consensus        77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq  131 (213)
T KOG0091|consen   77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ  131 (213)
T ss_pred             HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence            78888889999999987766665 5666666666554444456788999998754

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.28  E-value=7.5e-11  Score=99.50  Aligned_cols=121  Identities=13%  Similarity=0.190  Sum_probs=76.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEE---------------EeeC------------
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRT---------------VLKD------------   67 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~---------------~~~~------------   67 (230)
                      .....+|+++|+-.+|||||+.+|+|.....- .....+.|....+...               ....            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            34558999999999999999999998754211 1122344433332211               0000            


Q ss_pred             -----CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceEE
Q 026970           68 -----GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMI  141 (230)
Q Consensus        68 -----~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i  141 (230)
                           ...+.|+||||+.           .+.+.+......+|++++|+++.+. ........+.. ...++.   ++++
T Consensus       111 ~~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~lgi---~~iI  175 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAA-VEIMKL---KHII  175 (460)
T ss_pred             ccccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHH-HHHcCC---CcEE
Confidence                 2478999999963           2333333445577999999999854 34444444433 333453   4789


Q ss_pred             EEEeCCCCCC
Q 026970          142 VVFTGGDELE  151 (230)
Q Consensus       142 vv~tk~D~~~  151 (230)
                      +|+||+|+.+
T Consensus       176 VvlNKiDlv~  185 (460)
T PTZ00327        176 ILQNKIDLVK  185 (460)
T ss_pred             EEEecccccC
Confidence            9999999875

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.27  E-value=1.1e-10  Score=95.15  Aligned_cols=131  Identities=15%  Similarity=0.169  Sum_probs=81.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCC----cccc----------ccCCCCc---cceeeee---EEEEeeCC----eEE
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGR----RAFK----------SRASSSG---VTSTCEM---QRTVLKDG----QVV   71 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~----~~~~----------~~~~~~~---~t~~~~~---~~~~~~~~----~~~   71 (230)
                      .+....|+++|+.++|||||||++++.    +..+          ...+..+   .|+++.+   ..+...-.    .++
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            345589999999999999999999998    3210          0122334   5666555   22222222    589


Q ss_pred             EEEeCCCCCCCCCCcHHHHHH--------------HHH-----HHHhhcCCccEEEEEE-eCC------CCCCHHHHHHH
Q 026970           72 NVIDTPGLFDFSAGSEFVGKE--------------IVK-----CIGMAKDGIHAVLVVF-SVR------SRFSQEEEAAL  125 (230)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~il~v~-d~~------~~~~~~~~~~l  125 (230)
                      .++||+|+.+.......-...              |..     ..+....+++..|+|. |.+      +.....+..++
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            999999998755322211111              000     1111222567777777 663      34566677788


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCC
Q 026970          126 HSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..|++.     .+|+++|+|+.|-..
T Consensus       174 ~eLk~~-----~kPfiivlN~~dp~~  194 (492)
T TIGR02836       174 EELKEL-----NKPFIILLNSTHPYH  194 (492)
T ss_pred             HHHHhc-----CCCEEEEEECcCCCC
Confidence            888775     348999999999553

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=1.2e-10  Score=94.39  Aligned_cols=129  Identities=20%  Similarity=0.248  Sum_probs=86.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCccceeeeeEEEEee
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLK   66 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~   66 (230)
                      ..+..+++++|+..+|||||+-.|+-.....                             ......+.|.+.....+.. 
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-   82 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-   82 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-
Confidence            3456899999999999999998886543200                             0112357788777777765 


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccce
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDY  139 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~  139 (230)
                      +...++++|+||+-+           +..-+......+|+.++|+|+...       ....++.. -.|.+.+|   ...
T Consensus        83 ~k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG---i~~  147 (428)
T COG5256          83 DKYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG---IKQ  147 (428)
T ss_pred             CCceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC---Cce
Confidence            667899999999644           223334555678999999999744       22223332 34556667   347


Q ss_pred             EEEEEeCCCCCCCChhhHHHH
Q 026970          140 MIVVFTGGDELEDNDETLEDY  160 (230)
Q Consensus       140 ~ivv~tk~D~~~~~~~~~~~~  160 (230)
                      .|+++||+|..+=+...+++.
T Consensus       148 lIVavNKMD~v~wde~rf~ei  168 (428)
T COG5256         148 LIVAVNKMDLVSWDEERFEEI  168 (428)
T ss_pred             EEEEEEcccccccCHHHHHHH
Confidence            999999999986333334443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.26  E-value=8.4e-11  Score=98.61  Aligned_cols=122  Identities=17%  Similarity=0.233  Sum_probs=86.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....||+|+|.-|+||||||-+|+.....+..+. .+.++....+.    +......++||+.-.+.    .       .
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt----Pe~vpt~ivD~ss~~~~----~-------~   71 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT----PENVPTSIVDTSSDSDD----R-------L   71 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC----cCcCceEEEecccccch----h-------H
Confidence            4458999999999999999999998876543322 23333332221    24456889999843321    1       3


Q ss_pred             HHHhhcCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ++....+.+|++++++..++.  ++.....|+-.+++.+|+....|+|+|.||.|.....
T Consensus        72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~  131 (625)
T KOG1707|consen   72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE  131 (625)
T ss_pred             HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence            333445567999999987642  3334588999999999888889999999999988643

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.24  E-value=1.3e-10  Score=98.22  Aligned_cols=118  Identities=18%  Similarity=0.230  Sum_probs=78.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccc---------------------------c--ccCCCCccceeeeeEEEEeeC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAF---------------------------K--SRASSSGVTSTCEMQRTVLKD   67 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~---------------------------~--~~~~~~~~t~~~~~~~~~~~~   67 (230)
                      .+..+|+++|+.++|||||+-+|+.....                           +  ......++|....+..+.+ .
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~   83 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T   83 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence            44589999999999999999888632210                           0  0112346677776666654 6


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhcccccceE
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDYM  140 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~  140 (230)
                      ++.+.++||||+.+           +...+...+..+|++++|+|+.+. +.      ......+..+.. +|.   +++
T Consensus        84 ~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~i  148 (447)
T PLN00043         84 KYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQM  148 (447)
T ss_pred             CEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---CcE
Confidence            78999999999643           334444556788999999999753 21      223333332222 342   368


Q ss_pred             EEEEeCCCCC
Q 026970          141 IVVFTGGDEL  150 (230)
Q Consensus       141 ivv~tk~D~~  150 (230)
                      ++++||+|+.
T Consensus       149 IV~vNKmD~~  158 (447)
T PLN00043        149 ICCCNKMDAT  158 (447)
T ss_pred             EEEEEcccCC
Confidence            8999999975

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.24  E-value=1.2e-10  Score=87.78  Aligned_cols=118  Identities=24%  Similarity=0.234  Sum_probs=76.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE-EEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||+|...+++..+...    ...|....+.. ... .....+.|+||+|..++.           ..
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~----y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~-----------~~   67 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVED----YDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS-----------AM   67 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccc----cCCCccccceEEEEECCEEEEEEEEcCCCcccCh-----------HH
Confidence            47899999999999999988887665221    11232222221 111 123467799999954432           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ...+....|++++|++++++.+.+. ..+.+.+.+.-+. ...|+++|+||+|+...
T Consensus        68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~  123 (196)
T KOG0395|consen   68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERE  123 (196)
T ss_pred             HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhc
Confidence            2345567799999999997777665 3444555343232 23599999999998753

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.23  E-value=5.7e-11  Score=106.30  Aligned_cols=120  Identities=19%  Similarity=0.272  Sum_probs=79.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEe---eCCeEEEEEeCCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVL---KDGQVVNVIDTPG   78 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG   78 (230)
                      ....++|+++|+.++|||||+.+|+........              ....++|.......+.+   ..+..+.|+||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            345689999999999999999999754321110              00123444433332222   1356789999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.++.           ..+......+|++++|+|+.......+...+....+. +    .|.++++||+|...
T Consensus        97 ~~df~-----------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~~  153 (731)
T PRK07560         97 HVDFG-----------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRLI  153 (731)
T ss_pred             ccChH-----------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhhc
Confidence            97642           2333444566999999999877777777777664443 3    25789999999863

>PRK12740 elongation factor G; Reviewed

Probab=99.22  E-value=1.2e-10  Score=103.62  Aligned_cols=112  Identities=23%  Similarity=0.301  Sum_probs=74.9

Q ss_pred             EcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH
Q 026970           25 VGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (230)
Q Consensus        25 iG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (230)
                      +|+.++|||||+++|+........                ....++|.......+.+ .+..+.+|||||..++      
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence            599999999999999654321110                01235555555555555 7789999999998542      


Q ss_pred             HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                       ...    ....+..+|++++|+|++..........+..+...     ..|+++|+||+|....+
T Consensus        74 -~~~----~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         74 -TGE----VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGAD  128 (668)
T ss_pred             -HHH----HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCCC
Confidence             112    22334467999999999877766666655554442     24789999999987543

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.8e-10  Score=96.08  Aligned_cols=130  Identities=21%  Similarity=0.275  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFD   81 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~   81 (230)
                      ++-+++.++.+-..|||||..+|+....+...             ....++|...+...+.+.+  ...+.+|||||+-|
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            56689999999999999999998755431110             1245788887777666533  26889999999999


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHh
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  161 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l  161 (230)
                      ++...+       +.+..|    +++|+|+|+.+.........+-.-.+   ..  -.+|+|+||+|+...+++.++..+
T Consensus       138 Fs~EVs-------Rslaac----~G~lLvVDA~qGvqAQT~anf~lAfe---~~--L~iIpVlNKIDlp~adpe~V~~q~  201 (650)
T KOG0462|consen  138 FSGEVS-------RSLAAC----DGALLVVDASQGVQAQTVANFYLAFE---AG--LAIIPVLNKIDLPSADPERVENQL  201 (650)
T ss_pred             ccceeh-------ehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH---cC--CeEEEeeeccCCCCCCHHHHHHHH
Confidence            885544       444444    89999999988877665443332222   11  269999999999887776666555


Q ss_pred             c
Q 026970          162 G  162 (230)
Q Consensus       162 ~  162 (230)
                      .
T Consensus       202 ~  202 (650)
T KOG0462|consen  202 F  202 (650)
T ss_pred             H
Confidence            4

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.2e-10  Score=102.11  Aligned_cols=120  Identities=21%  Similarity=0.274  Sum_probs=90.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeC-CeEEEEEeCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGL   79 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~   79 (230)
                      ...++|+++|+..+|||||..+|+........                ....++|.........| . +..+++|||||+
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCc
Confidence            45589999999999999999998754432111                11346777777777776 5 489999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      -|+..       ++.+++    +-.|++++|+|+.+.........++...+.     ..|.++++||+|.+..+
T Consensus        87 VDFt~-------EV~rsl----rvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          87 VDFTI-------EVERSL----RVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             cccHH-------HHHHHH----HhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence            98752       233444    344899999999888888888888777765     24899999999998654

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.20  E-value=4.9e-11  Score=93.63  Aligned_cols=90  Identities=19%  Similarity=0.305  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      -+++|+|.|++|||||+|.|++...   .....+.|+-.....+..+++-.++++|+||+....+.......++.    .
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vl----s  136 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVL----S  136 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceee----e
Confidence            6999999999999999999999873   33333334433444444458999999999999875544332223222    3


Q ss_pred             hcCCccEEEEEEeCCCC
Q 026970          100 AKDGIHAVLVVFSVRSR  116 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~  116 (230)
                      ..+.+|++++|+|+...
T Consensus       137 v~R~ADlIiiVld~~~~  153 (365)
T COG1163         137 VARNADLIIIVLDVFED  153 (365)
T ss_pred             eeccCCEEEEEEecCCC
Confidence            34677999999999743

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.19  E-value=2.4e-10  Score=94.94  Aligned_cols=89  Identities=20%  Similarity=0.101  Sum_probs=58.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--------------------e---CCeEEEEEeC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------K---DGQVVNVIDT   76 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~~~liDt   76 (230)
                      .+|+++|.+++|||||+|+|++.....  ...+.+|..+.......                    .   ....+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            589999999999999999999886422  22344454444432211                    1   1246889999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      ||+.........+...+...    ...+|++++|+|+.
T Consensus        80 aGl~~ga~~g~glg~~fL~~----ir~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDD----LRQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence            99976443333444444444    45569999999985

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.19  E-value=1.6e-09  Score=83.54  Aligned_cols=94  Identities=18%  Similarity=0.105  Sum_probs=60.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC-ccccccCCCCccceeeeeEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      +...|+++|++++|||||+|.|+|. ..|........+|...........  .+..+.++||||+.+...........+ 
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~-   84 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL-   84 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH-
Confidence            4478999999999999999999998 345554444566666555544332  357899999999998665431111111 


Q ss_pred             HHHHhhcCCccEEEEEEeCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~  114 (230)
                      -++...  -.+++||.++..
T Consensus        85 ~~l~~l--lss~~i~n~~~~  102 (224)
T cd01851          85 FALATL--LSSVLIYNSWET  102 (224)
T ss_pred             HHHHHH--HhCEEEEeccCc
Confidence            111111  236778777664

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.17  E-value=2.8e-10  Score=91.87  Aligned_cols=87  Identities=21%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-----------------------eCCeEEEEEeCCC
Q 026970           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------------KDGQVVNVIDTPG   78 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~liDtPG   78 (230)
                      |+++|.+++|||||+|+|++.... . ...+.+|..+.......                       .....+.++||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~-~-~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVE-I-ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            589999999999999999987642 1 12233444444322211                       0224789999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      +.........+...+..    .++.+|++++|+|+.
T Consensus        79 lv~ga~~~~glg~~fL~----~ir~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLD----DLRDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence            96533222333344433    345669999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01858 NGP_1 NGP-1

Probab=99.17  E-value=8.1e-11  Score=85.93  Aligned_cols=57  Identities=23%  Similarity=0.311  Sum_probs=41.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (230)
                      ...+|+++|.+|+|||||+|+|++......+. .+++|.......    .+..+.++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence            34789999999999999999999977644433 344555544432    2345889999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.16  E-value=3.4e-10  Score=92.77  Aligned_cols=119  Identities=20%  Similarity=0.319  Sum_probs=86.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc-cc-----------c--CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF-KS-----------R--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~-~~-----------~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      -++|+++.+-..|||||+..|+.+... ..           .  ....++|.-..-..+.+ ++.++.++||||+.|+.+
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG   83 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG   83 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc
Confidence            379999999999999999999876531 00           0  12356777666666665 889999999999999886


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (230)
                      ..+       +.    ..-+|++++++|+.+..-+..+..++.-.+. |    -+.|+|+||+|....++
T Consensus        84 EVE-------Rv----l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-g----L~PIVVvNKiDrp~Arp  137 (603)
T COG1217          84 EVE-------RV----LSMVDGVLLLVDASEGPMPQTRFVLKKALAL-G----LKPIVVINKIDRPDARP  137 (603)
T ss_pred             hhh-------hh----hhhcceEEEEEEcccCCCCchhhhHHHHHHc-C----CCcEEEEeCCCCCCCCH
Confidence            655       22    2345899999999877776766555443332 2    15789999999986553

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=2.3e-09  Score=85.74  Aligned_cols=134  Identities=18%  Similarity=0.273  Sum_probs=83.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEE---------------------------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT---------------------------------   63 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---------------------------------   63 (230)
                      ...+-|+++|+...||||||+.|+..+++.....+.++|-.....-.                                 
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            34578999999999999999999998875333222222211111100                                 


Q ss_pred             ----EeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccc
Q 026970           64 ----VLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKI  136 (230)
Q Consensus        64 ----~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~  136 (230)
                          ...+.  ..+.+|||||+.+.....-...-.+...+.....++|.|++++|+. -.++.+....+..++..     
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~-----  210 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH-----  210 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC-----
Confidence                00000  1489999999986332111112235566677778899999999986 12444445565555442     


Q ss_pred             cceEEEEEeCCCCCCCChhhH
Q 026970          137 FDYMIVVFTGGDELEDNDETL  157 (230)
Q Consensus       137 ~~~~ivv~tk~D~~~~~~~~~  157 (230)
                      ...+=||+||+|..+  .+++
T Consensus       211 EdkiRVVLNKADqVd--tqqL  229 (532)
T KOG1954|consen  211 EDKIRVVLNKADQVD--TQQL  229 (532)
T ss_pred             cceeEEEeccccccC--HHHH
Confidence            236889999999987  4443

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.14  E-value=3.7e-11  Score=86.78  Aligned_cols=62  Identities=31%  Similarity=0.368  Sum_probs=37.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccccc----C--CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR----A--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~----~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (230)
                      ..++|+|++|||||||||.|++.....++    .  ....+|.....+..    .....||||||+.++...
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFGLW  103 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--GC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccccc
Confidence            79999999999999999999998543321    1  12233444444433    224579999999876544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.14  E-value=6e-10  Score=85.80  Aligned_cols=127  Identities=18%  Similarity=0.203  Sum_probs=81.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKE   92 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~   92 (230)
                      ....++++++|.+++|||||||.++...... ......+-|...+.+.    -+..++++|.||++......+  .-+..
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence            4566899999999999999999998765422 2222444455544442    467899999999654322111  11222


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +......-....-.+++++|++-.+...|...+.++-+.     ..|..+|+||||+..
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k  262 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK  262 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence            322222111222345666777767777788888877764     348999999999875

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.11  E-value=2.3e-10  Score=84.51  Aligned_cols=56  Identities=34%  Similarity=0.430  Sum_probs=42.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (230)
                      ..+++++|.+|+|||||+|+|++......+. .+++|...+....    +..+.++||||+
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~----~~~~~l~DtPGi  172 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHL----DKKVKLLDSPGI  172 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEe----CCCEEEEECcCC
Confidence            4799999999999999999999987655543 4566665544432    346889999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=3.9e-10  Score=86.79  Aligned_cols=128  Identities=16%  Similarity=0.165  Sum_probs=76.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC--CccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHH------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS--SGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEF------   88 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~------   88 (230)
                      =..+|+.+|.+|.|||||+.+|++...-......  +.+......+..... -...++++||.|++|.....+.      
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            3479999999999999999999987753222111  111111122211111 1237899999999974432211      


Q ss_pred             -HHHHHHHH----------HH-hhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           89 -VGKEIVKC----------IG-MAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        89 -~~~~~~~~----------~~-~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       +-.++..+          +. ....++|++||+|.++ ..+...+.-.++.+...      .++|.|+.|+|...
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtis  190 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhh
Confidence             11111111          11 1125789999999885 34555555555555443      36899999999876

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.10  E-value=3.1e-10  Score=84.20  Aligned_cols=115  Identities=21%  Similarity=0.145  Sum_probs=79.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ..+++++|..++|||+++-..+...+ +...   ..|....+. .+...++.  .+.+|||.|..+.+           +
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~y---vPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD-----------r   68 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEEY---VPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD-----------R   68 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcC-cccc---cCeEEccceEEEEecCCCEEEEeeeecCCCcccc-----------c
Confidence            37899999999999999988775533 2221   123322222 23321243  57899999987653           1


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .-..+++.+|+||+++++.++.+.+  ..+|+..++..+.   ..|+++|++|.|+..
T Consensus        69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~  123 (198)
T KOG0393|consen   69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRD  123 (198)
T ss_pred             ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhh
Confidence            1125889999999999998665555  3778888887763   348999999999884

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1.9e-09  Score=74.52  Aligned_cols=123  Identities=16%  Similarity=0.176  Sum_probs=79.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE--EEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ..+.+++|.-|+|||.|+..++...+..    ..+.|....+..  +.. ....++.+|||.|.           ++++.
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfma----dcphtigvefgtriievsgqkiklqiwdtagq-----------erfra   75 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMA----DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ-----------ERFRA   75 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhh----cCCcccceecceeEEEecCcEEEEEEeecccH-----------HHHHH
Confidence            4788999999999999999988665421    222233333321  111 13357899999994           45667


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHH
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE  158 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~  158 (230)
                      ....+++++.+.++|+|++.+.+-.. ..|+..-+.+-  +....++++.||.|+-...+...+
T Consensus        76 vtrsyyrgaagalmvyditrrstynhlsswl~dar~lt--npnt~i~lignkadle~qrdv~ye  137 (215)
T KOG0097|consen   76 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLESQRDVTYE  137 (215)
T ss_pred             HHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC--CCceEEEEecchhhhhhcccCcHH
Confidence            77788999999999999985554433 33443333321  223357788899998654444433

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=6.5e-09  Score=71.89  Aligned_cols=126  Identities=15%  Similarity=0.197  Sum_probs=84.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+.+|-.++||||++-.|.-....     ....|....+..+.+ .+..+.++|.-|.           ..++...
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-----~~ipTvGFnvetVty-kN~kfNvwdvGGq-----------d~iRplW   78 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTY-KNVKFNVWDVGGQ-----------DKIRPLW   78 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCc-----ccccccceeEEEEEe-eeeEEeeeeccCc-----------hhhhHHH
Confidence            4579999999999999999888644321     112233344444444 6678999998884           3456777


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-c-cceEEEEEeCCCCCCCC-hhhHHHHhc
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-I-FDYMIVVFTGGDELEDN-DETLEDYLG  162 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~-~-~~~~ivv~tk~D~~~~~-~~~~~~~l~  162 (230)
                      ..++++..++|||+|..++  ......-..+.+..+.+ + ..++++..||.|+.... ++.+.++++
T Consensus        79 rhYy~gtqglIFV~Dsa~~--dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le  144 (180)
T KOG0071|consen   79 RHYYTGTQGLIFVVDSADR--DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE  144 (180)
T ss_pred             HhhccCCceEEEEEeccch--hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence            7889999999999998644  22233444555555533 2 23677888999987532 566777765

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.08  E-value=9.6e-10  Score=76.03  Aligned_cols=120  Identities=16%  Similarity=0.114  Sum_probs=79.6

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      +++....+|+++|--++|||||++.|.+.++...     ..|.......+.......+.+||..|.-           .+
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hl-----tpT~GFn~k~v~~~g~f~LnvwDiGGqr-----------~I   75 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-----TPTNGFNTKKVEYDGTFHLNVWDIGGQR-----------GI   75 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCChhhc-----cccCCcceEEEeecCcEEEEEEecCCcc-----------cc
Confidence            4456679999999999999999999998875332     2233333344444344789999988853           34


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +-..+.+|..+|.+|||+|.++. ...+. ..+.+.+.+  .+....|+.+-.||.|++.
T Consensus        76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELlee--eKl~~vpvlIfankQdllt  133 (185)
T KOG0074|consen   76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEE--EKLAEVPVLIFANKQDLLT  133 (185)
T ss_pred             chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhh--hhhhccceeehhhhhHHHh
Confidence            45666788899999999997533 22222 222222222  1223447888889999886

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=3.6e-09  Score=78.46  Aligned_cols=119  Identities=15%  Similarity=0.198  Sum_probs=73.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +..|+++|.+++|||+|+-.|.-....     ..-+.+......+.. +...+.+||.||+..       +..++...+.
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~  104 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLK  104 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHcc
Confidence            378999999999999999887654221     111122333333333 344579999999752       3344444443


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~~  152 (230)
                      .. ..+-+++||+|.. -+...-+...+++...+-    ..-..|++++.||.|++..
T Consensus       105 ~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA  160 (238)
T KOG0090|consen  105 HN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA  160 (238)
T ss_pred             cc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence            32 2567899999986 444444444444443332    2334589999999999864

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.05  E-value=1.1e-09  Score=86.15  Aligned_cols=129  Identities=17%  Similarity=0.140  Sum_probs=86.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      +.+.|.++|.|++||||||++|++....+.  ..-..|.++.......+.|..+.+.||-||...-  ...+...|...+
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~--drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ATL  252 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPN--DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQATL  252 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCcc--chhheeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHHH
Confidence            347999999999999999999997766433  2334466666665666788999999999997421  222333333333


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK---IFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ivv~tk~D~~~  151 (230)
                      ... ..+|.++.|+|++.+.-...........+..|-+   ....++=|=||.|.-+
T Consensus       253 eeV-aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~  308 (410)
T KOG0410|consen  253 EEV-AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE  308 (410)
T ss_pred             HHH-hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence            322 3568999999998665555444443333334532   3446777889998765

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.04  E-value=7.8e-10  Score=79.22  Aligned_cols=57  Identities=26%  Similarity=0.386  Sum_probs=40.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (230)
                      .+++++|.+|+|||||+|+|++....... ...+.|.......+   + ..+.++||||+..
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~---~-~~~~i~DtpG~~~  140 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFL---T-PTITLCDCPGLVF  140 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEe---C-CCEEEEECCCcCC
Confidence            48999999999999999999988764332 23344554443322   2 3679999999863

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.04  E-value=1.5e-09  Score=86.83  Aligned_cols=66  Identities=23%  Similarity=0.343  Sum_probs=49.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (230)
                      ...+++++|.+|+|||||+|+|++.....++. .+++|...+....    +..+.++||||+..+....++
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~----~~~~~l~DtPGi~~~~~~~~~  185 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKL----GKGLELLDTPGILWPKLEDQE  185 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEe----CCcEEEEECCCcCCCCCCcHH
Confidence            45799999999999999999999987644432 4566766654322    346889999999877655443

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=3.3e-09  Score=76.97  Aligned_cols=118  Identities=14%  Similarity=0.073  Sum_probs=80.6

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ...+..+|+++|--+|||||++..|--......     .+|.......+.+ .+..+.+||.-|...           ++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R   75 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LR   75 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------cc
Confidence            345668999999999999999988865544322     3355555555554 678999999988643           22


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      .....++...+++|||+|.+++..-.  ..-+.+.+.+...  ...|+++..||.|...
T Consensus        76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~--eak~eL~~~l~~~~l~~~~llv~aNKqD~~~  132 (181)
T KOG0070|consen   76 PLWKHYFQNTQGLIFVVDSSDRERIE--EAKEELHRMLAEPELRNAPLLVFANKQDLPG  132 (181)
T ss_pred             cchhhhccCCcEEEEEEeCCcHHHHH--HHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence            44557778889999999997543222  2333334433322  3458999999999875

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.2e-09  Score=90.77  Aligned_cols=131  Identities=21%  Similarity=0.246  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCC-----------------------------------------ccceee
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----------------------------------------GVTSTC   58 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~-----------------------------------------~~t~~~   58 (230)
                      -+|++.|.+++||||++|+++.....+.+..+.                                         ......
T Consensus       110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~  189 (749)
T KOG0448|consen  110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG  189 (749)
T ss_pred             cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence            689999999999999999998776533322110                                         000011


Q ss_pred             eeEEEEeeCC------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 026970           59 EMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF  132 (230)
Q Consensus        59 ~~~~~~~~~~------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~  132 (230)
                      ....+.++++      ..+.++|.||+.-.        .+....+..+...+|+++||+++.+.++....+++....+. 
T Consensus       190 sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-  260 (749)
T KOG0448|consen  190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-  260 (749)
T ss_pred             eEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence            1112333333      25899999998742        22224444555678999999999878887776666555443 


Q ss_pred             cccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970          133 GKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (230)
Q Consensus       133 ~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (230)
                          .++++|+.||||...+.++-.+..+++
T Consensus       261 ----KpniFIlnnkwDasase~ec~e~V~~Q  287 (749)
T KOG0448|consen  261 ----KPNIFILNNKWDASASEPECKEDVLKQ  287 (749)
T ss_pred             ----CCcEEEEechhhhhcccHHHHHHHHHH
Confidence                457999999999987555555555543

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.03  E-value=3.4e-10  Score=76.67  Aligned_cols=115  Identities=22%  Similarity=0.255  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++++++|+.|+|||||.++|-|......      -|....+.     +.   ..|||||-+-.       .....+++..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KTQAve~~-----d~---~~IDTPGEy~~-------~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KTQAVEFN-----DK---GDIDTPGEYFE-------HPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhc------ccceeecc-----Cc---cccCCchhhhh-------hhHHHHHHHH
Confidence            5899999999999999999998764211      12222221     11   26999996531       2334455556


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC-ChhhHHHHhcc
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGR  163 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~  163 (230)
                      ....++++++|..++++-+.-...        |-....+++|-|+||.|+.++ +-+....+|..
T Consensus        61 t~~dadvi~~v~~and~~s~f~p~--------f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e  117 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFPPG--------FLDIGVKKVIGVVTKADLAEDADISLVKRWLRE  117 (148)
T ss_pred             HhhccceeeeeecccCccccCCcc--------cccccccceEEEEecccccchHhHHHHHHHHHH
Confidence            666789999999887442211111        122223469999999999852 22233444443

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.02  E-value=8.6e-10  Score=76.76  Aligned_cols=115  Identities=20%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ...+.++|--++|||||+|.++...+  .  .....|.....+.+.. ....+.++|.||...+           .....
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~--~--edmiptvGfnmrk~tk-gnvtiklwD~gGq~rf-----------rsmWe   83 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQY--L--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----------RSMWE   83 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccc--h--hhhcccccceeEEecc-CceEEEEEecCCCccH-----------HHHHH
Confidence            46889999999999999999876443  1  1222344444444442 4568889999997543           24445


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      .+.+++++++||+|+.++-.-  ...-..++.++.++  ...|++++.||.|+..
T Consensus        84 rycR~v~aivY~VDaad~~k~--~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~  136 (186)
T KOG0075|consen   84 RYCRGVSAIVYVVDAADPDKL--EASRSELHDLLDKPSLTGIPLLVLGNKIDLPG  136 (186)
T ss_pred             HHhhcCcEEEEEeecCCcccc--hhhHHHHHHHhcchhhcCCcEEEecccccCcc
Confidence            677899999999998643111  11112333333333  2358999999999875

>cd01855 YqeH YqeH

Probab=99.01  E-value=4.7e-10  Score=84.52  Aligned_cols=57  Identities=30%  Similarity=0.335  Sum_probs=40.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccc-------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFK-------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (230)
                      ..+++++|.+|+|||||||+|++.....       .....+++|.......+    +..+.|+||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            4689999999999999999999865321       11223455666554433    225789999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK13768 GTPase; Provisional

Probab=99.00  E-value=3.4e-09  Score=83.27  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=48.8

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~  149 (230)
                      .+.++||||..+.... ......+.+.+....  ++++++|+|+....+..+.....++..........|+++|+||+|.
T Consensus        98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL  174 (253)
T ss_pred             CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence            6899999997653211 223344444444322  6899999999755556554444433321111224589999999999


Q ss_pred             CC
Q 026970          150 LE  151 (230)
Q Consensus       150 ~~  151 (230)
                      ..
T Consensus       175 ~~  176 (253)
T PRK13768        175 LS  176 (253)
T ss_pred             cC
Confidence            86

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.00  E-value=7.6e-10  Score=79.59  Aligned_cols=118  Identities=18%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...+++++|.-++||||+|.+.+..-+ ..+. ...+..+.....+.. ..+.++.+|||.|..+           +...
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgif-Tkdy-kktIgvdflerqi~v~~Edvr~mlWdtagqeE-----------fDaI   85 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDY-KKTIGVDFLERQIKVLIEDVRSMLWDTAGQEE-----------FDAI   85 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhcccc-cccc-ccccchhhhhHHHHhhHHHHHHHHHHhccchh-----------HHHH
Confidence            347899999999999999999984432 2211 111111111111111 1234567899999644           3345


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+.+++++.+.++|++-+++.+.+. ..|.+.+....+   ..|.++|-||+|+++
T Consensus        86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~---~IPtV~vqNKIDlve  138 (246)
T KOG4252|consen   86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE---RIPTVFVQNKIDLVE  138 (246)
T ss_pred             HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc---cCCeEEeeccchhhH
Confidence            5678899999999999987766554 445555555444   358999999999986

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.99  E-value=1.3e-09  Score=79.42  Aligned_cols=57  Identities=26%  Similarity=0.419  Sum_probs=41.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (230)
                      ...+++++|.+|+|||||+|+|++......+. ..++|........    +..+.++||||+
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~~----~~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVKL----DNKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEEe----cCCEEEEECCCC
Confidence            45899999999999999999999976533322 3445555544322    356899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.5e-08  Score=80.42  Aligned_cols=119  Identities=17%  Similarity=0.284  Sum_probs=75.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc---ccccc--CCCCccceeeeeEEEEeeCCe--------EEEEEeCCCCCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR---AFKSR--ASSSGVTSTCEMQRTVLKDGQ--------VVNVIDTPGLFDFSA   84 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~~~~--------~~~liDtPG~~~~~~   84 (230)
                      ...+++++|+-.+|||||.++|....   .|+..  ....++|.+..+.......+.        .++++|+||+..   
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---   82 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---   82 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence            34899999999999999999985332   22222  224566666666554433222        569999999742   


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                              +.+.+.....-.|..++|+|+.........+.+-.     |...-++.++|+||+|.+.+
T Consensus        83 --------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-----g~~~c~klvvvinkid~lpE  137 (522)
T KOG0461|consen   83 --------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-----GELLCKKLVVVINKIDVLPE  137 (522)
T ss_pred             --------HHHHHHhhhheeeeeeEEEehhcccccccchhhhh-----hhhhccceEEEEeccccccc
Confidence                    22333233344588999999975555444333321     22222368899999998863

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.99  E-value=2.6e-09  Score=84.14  Aligned_cols=63  Identities=27%  Similarity=0.321  Sum_probs=42.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccccc----C--CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR----A--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~----~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      .....+++|++|||||||+|+|.+.....++    .  ....+|+....+.+.. .   -.|+|||||..+..
T Consensus       163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-g---G~iiDTPGf~~~~l  231 (301)
T COG1162         163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-G---GWIIDTPGFRSLGL  231 (301)
T ss_pred             cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-C---CEEEeCCCCCccCc
Confidence            3468899999999999999999985432221    1  2233455555554431 2   36999999987654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.99  E-value=3.1e-09  Score=84.66  Aligned_cols=65  Identities=23%  Similarity=0.310  Sum_probs=47.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE   87 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~   87 (230)
                      ...+++++|.+|+|||||+|+|++.....++. .+++|...+....    +..+.++||||+..+.....
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~----~~~~~l~DtPG~~~~~~~~~  181 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKL----SDGLELLDTPGILWPKFEDQ  181 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEe----CCCEEEEECCCcccCCCCch
Confidence            45789999999999999999999877544432 4455665544332    34679999999976654443

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.98  E-value=1.3e-07  Score=78.86  Aligned_cols=122  Identities=18%  Similarity=0.232  Sum_probs=71.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh------CCccccccCCC-C-c-------cc--eeeeeEEEEe---------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS-S-G-------VT--STCEMQRTVL---------------   65 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~------~~~~~~~~~~~-~-~-------~t--~~~~~~~~~~---------------   65 (230)
                      .+..|+++|.+|+||||++..|.      |..+....... . +       ..  ....++....               
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            35789999999999999999886      43321111110 0 0       00  0011111000               


Q ss_pred             -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                       ..+..++||||||...   .......++.......  .++.+++|+|+...  .......+.+.+..     .+.-+|+
T Consensus       179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~~--~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~Il  246 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEAI--QPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVII  246 (429)
T ss_pred             HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhhc--CCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEEE
Confidence             0246889999999754   2344556666554333  56889999998633  33344445554433     3688999


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||.|...
T Consensus       247 TKlD~~a  253 (429)
T TIGR01425       247 TKLDGHA  253 (429)
T ss_pred             ECccCCC
Confidence            9999864

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=9.8e-09  Score=84.03  Aligned_cols=124  Identities=20%  Similarity=0.305  Sum_probs=93.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .|+..|+-..|||||+.+++|...-. ......++|.+..++.... .+..+.|+|.||+.+           +.+.+..
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence            57889999999999999999876421 2234678899999998876 445899999999853           2233334


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                      ....+|..++|+++++.+...+.+.+..+.- +|.   .+.++|+||+|..+  ...+++.++
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi---~~giivltk~D~~d--~~r~e~~i~  126 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGI---KNGIIVLTKADRVD--EARIEQKIK  126 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCC---CceEEEEecccccc--HHHHHHHHH
Confidence            5567799999999988999888877766554 574   37899999999987  445555444

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.97  E-value=9.3e-09  Score=79.24  Aligned_cols=79  Identities=22%  Similarity=0.094  Sum_probs=41.4

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc-ccccceEEEEEeCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG-KKIFDYMIVVFTGG  147 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivv~tk~  147 (230)
                      ..+++|||||..+.- ....-..-|...+...  .+.+++||+|.. +.+......-.++....- -...-|+++|+||+
T Consensus       116 ~~~~liDTPGQIE~F-tWSAsGsIIte~lass--~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~  191 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAF-TWSASGSIITETLASS--FPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTKLPFIVVFNKT  191 (366)
T ss_pred             cCEEEEcCCCceEEE-EecCCccchHhhHhhc--CCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhccCCeEEEEecc
Confidence            358999999987421 0000112233444444  346789999875 333222111111111100 11234899999999


Q ss_pred             CCCC
Q 026970          148 DELE  151 (230)
Q Consensus       148 D~~~  151 (230)
                      |..+
T Consensus       192 Dv~d  195 (366)
T KOG1532|consen  192 DVSD  195 (366)
T ss_pred             cccc
Confidence            9876

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.96  E-value=1.1e-08  Score=81.35  Aligned_cols=128  Identities=15%  Similarity=0.205  Sum_probs=89.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccc-----------cc---c-----------------CCCCccceeeeeEEEEe
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAF-----------KS---R-----------------ASSSGVTSTCEMQRTVL   65 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~-----------~~---~-----------------~~~~~~t~~~~~~~~~~   65 (230)
                      ...++++-+|.-.-||||||-.|+.....           .+   +                 ....++|++..+..+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            45589999999999999999988754320           00   0                 11248888888776665


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (230)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t  145 (230)
                       ..+++.+.||||+.           ++.+-+......+|+.++++|+...+-...+. -..+..++|-   +++++.+|
T Consensus        84 -~KRkFIiADTPGHe-----------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGI---rhvvvAVN  147 (431)
T COG2895          84 -EKRKFIIADTPGHE-----------QYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGI---RHVVVAVN  147 (431)
T ss_pred             -ccceEEEecCCcHH-----------HHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCC---cEEEEEEe
Confidence             77899999999974           33344445556779999999997555444432 2345666673   48999999


Q ss_pred             CCCCCCCChhhHHHH
Q 026970          146 GGDELEDNDETLEDY  160 (230)
Q Consensus       146 k~D~~~~~~~~~~~~  160 (230)
                      |+|+..=+.+.++++
T Consensus       148 KmDLvdy~e~~F~~I  162 (431)
T COG2895         148 KMDLVDYSEEVFEAI  162 (431)
T ss_pred             eecccccCHHHHHHH
Confidence            999986444444443

>cd01856 YlqF YlqF

Probab=98.96  E-value=2.4e-09  Score=79.22  Aligned_cols=59  Identities=25%  Similarity=0.387  Sum_probs=42.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (230)
                      +..++++++|.+|+|||||+|.|++....... ...++|.......+    ...+.++||||+.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~----~~~~~~iDtpG~~  171 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKI----SPGIYLLDTPGIL  171 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEe----cCCEEEEECCCCC
Confidence            34579999999999999999999987653232 23345555544433    1568899999973

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.96  E-value=3.8e-08  Score=82.55  Aligned_cols=142  Identities=18%  Similarity=0.171  Sum_probs=94.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC----------------------------------------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----------------------------------------------   51 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~----------------------------------------------   51 (230)
                      .-++|+++|.-.+||||.+..+....+|+-+...                                              
T Consensus       307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R  386 (980)
T KOG0447|consen  307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR  386 (980)
T ss_pred             cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence            3489999999999999999999877665433211                                              


Q ss_pred             ------CccceeeeeEEEEe--eCCeEEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH
Q 026970           52 ------SGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  121 (230)
Q Consensus        52 ------~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~  121 (230)
                            .+.|..........  ++=.+.+++|.||+..+..  ...+....|...-+.+..++++||+|+.-. ..+.+-
T Consensus       387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAER  465 (980)
T KOG0447|consen  387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAER  465 (980)
T ss_pred             HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchhh
Confidence                  14444444433332  1224789999999987543  233455666666677788999999999654 444444


Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCCCCC---hhhHHHHhc
Q 026970          122 EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLG  162 (230)
Q Consensus       122 ~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~  162 (230)
                      ....+.+...  .+.-..+|+|+||.|+.+.+   +..+..+++
T Consensus       466 SnVTDLVsq~--DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  466 SIVTDLVSQM--DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             hhHHHHHHhc--CCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            4444444443  33446799999999988652   556666666

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.95  E-value=2.8e-08  Score=69.81  Aligned_cols=122  Identities=19%  Similarity=0.091  Sum_probs=75.1

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      .+..-+|+++|.-++|||+++..|+-.+....  .....|+...+. .+....+  ..+.+.||.|+.+..   .    +
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~--~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~----e   76 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPG--TELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---Q----E   76 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCC--CccccchhhheeEeeecCCChhheEEEeecccccCch---h----h
Confidence            35567999999999999999988875543211  122234433332 2332222  378999999998642   1    1


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh---cccccceEEEEEeCCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF---GKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~---~~~~~~~~ivv~tk~D~~~~  152 (230)
                         .-..++.-+|++++|++..+.   +..+.++.|++..   ......|++++.|++|+.++
T Consensus        77 ---Lprhy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p  133 (198)
T KOG3883|consen   77 ---LPRHYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP  133 (198)
T ss_pred             ---hhHhHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence               112344456999999987643   3333444443332   33344589999999999753

>PRK12288 GTPase RsgA; Reviewed

Probab=98.93  E-value=5.4e-09  Score=85.43  Aligned_cols=61  Identities=26%  Similarity=0.440  Sum_probs=41.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      ..++|+|.+|||||||||+|++.....++.-      ...+|.....+.+.  .+  ..|+||||+..+..
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l  272 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGL  272 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccC
Confidence            3589999999999999999998865433211      12245555555442  22  25999999987654

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=7.7e-09  Score=86.94  Aligned_cols=113  Identities=20%  Similarity=0.214  Sum_probs=77.7

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      ...+++..++++|++|+||||||++|...-.... ....+++|.       .....++++|+.+|.  +        ...
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D--------l~~  126 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D--------LHQ  126 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H--------HHH
Confidence            3445668888999999999999999975432111 111122222       123567899999994  2        122


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..    ...-+|.+|+++|....+..+...++..+... |.   +.++-|+||.|++.
T Consensus       127 miD----vaKIaDLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk  177 (1077)
T COG5192         127 MID----VAKIADLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFK  177 (1077)
T ss_pred             HHh----HHHhhheeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeeccccc
Confidence            222    33445899999999888888888888777664 53   47999999999997

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=8.7e-09  Score=84.14  Aligned_cols=123  Identities=15%  Similarity=0.220  Sum_probs=85.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh--CCcccccc------------------CCCCccceeeeeEEEEeeCCeEEEEEeC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL--GRRAFKSR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~--~~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (230)
                      ...++.++|-+|.+|||||-..|+  |..+...+                  ....++.....+-.+.+ ++..+.++||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT   88 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT   88 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence            345789999999999999987764  22211000                  01235555555555664 7889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhh
Q 026970           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET  156 (230)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~  156 (230)
                      ||+.|++.+..           ..+.-+|..++|+|+-..+.....++++..+-. +    .|++-.+||+|.-..++-.
T Consensus        89 PGHeDFSEDTY-----------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~----iPI~TFiNKlDR~~rdP~E  152 (528)
T COG4108          89 PGHEDFSEDTY-----------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR-D----IPIFTFINKLDREGRDPLE  152 (528)
T ss_pred             CCccccchhHH-----------HHHHhhheeeEEEecccCccHHHHHHHHHHhhc-C----CceEEEeeccccccCChHH
Confidence            99999874333           222345899999999778988888887765543 2    4899999999987655443

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.92  E-value=3.6e-09  Score=79.76  Aligned_cols=75  Identities=24%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.+|||||....   ......++.+.+...  .++-+++|++++..  ..+........+.++     ..-+++||.
T Consensus        83 ~~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKl  150 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKL  150 (196)
T ss_dssp             TSSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEEST
T ss_pred             CCCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEee
Confidence            356899999998642   344556666665554  56789999999733  333334444444443     456889999


Q ss_pred             CCCCCCh
Q 026970          148 DELEDND  154 (230)
Q Consensus       148 D~~~~~~  154 (230)
                      |....-+
T Consensus       151 Det~~~G  157 (196)
T PF00448_consen  151 DETARLG  157 (196)
T ss_dssp             TSSSTTH
T ss_pred             cCCCCcc
Confidence            9976433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.91  E-value=5.8e-10  Score=76.33  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=74.7

Q ss_pred             EEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970           23 VLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (230)
Q Consensus        23 ~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (230)
                      +++|.+++|||.|+-.+-...+.. .-.+.-++.......... ....++++|||.|..           .++.....++
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-~~kvklqiwdtagqe-----------rfrsvt~ayy   68 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQE-----------RFRSVTHAYY   68 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-CcEEEEEEeeccchH-----------HHhhhhHhhh
Confidence            378999999998764432221111 011222222222332221 123578999999953           4456666788


Q ss_pred             CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       102 ~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.+|++++++|+.++.+.+. ..|+..++++....  ..++++.||+|...
T Consensus        69 rda~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~  117 (192)
T KOG0083|consen   69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAH  117 (192)
T ss_pred             cccceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccch
Confidence            99999999999987877766 77888888864322  35889999999865

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=2.2e-08  Score=84.42  Aligned_cols=122  Identities=19%  Similarity=0.235  Sum_probs=82.0

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCccceeeeeEEEEe
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVL   65 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~   65 (230)
                      .......++++|+..+|||||+..|+-.-..                             .......++|+......+..
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            3446689999999999999999887543220                             01123457888877776663


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC-----CCCHH-HHHHHHHHHHHhcccccce
Q 026970           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-----RFSQE-EEAALHSLQTLFGKKIFDY  139 (230)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-----~~~~~-~~~~l~~l~~~~~~~~~~~  139 (230)
                       ....++++|+||+.+|..           -+......+|+.++|+|++.     .|... .......+.+.+|.   ..
T Consensus       253 -~~~~~tliDaPGhkdFi~-----------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi---~q  317 (603)
T KOG0458|consen  253 -KSKIVTLIDAPGHKDFIP-----------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI---SQ  317 (603)
T ss_pred             -CceeEEEecCCCccccch-----------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc---ce
Confidence             677899999999877542           12234456799999999862     12211 12223345555673   47


Q ss_pred             EEEEEeCCCCCC
Q 026970          140 MIVVFTGGDELE  151 (230)
Q Consensus       140 ~ivv~tk~D~~~  151 (230)
                      .+|++||+|...
T Consensus       318 livaiNKmD~V~  329 (603)
T KOG0458|consen  318 LIVAINKMDLVS  329 (603)
T ss_pred             EEEEeecccccC
Confidence            999999999985

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=6.6e-09  Score=83.73  Aligned_cols=89  Identities=21%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-----------------CeEEEEEeCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------------GQVVNVIDTPGLFDF   82 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~liDtPG~~~~   82 (230)
                      ++++++|.|+||||||+|+++....  .....+.+|+.+........+                 ...+.|+|.+|+-..
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            6899999999999999999998763  223355566666554332211                 125889999999987


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      .+..+.+..+|..-+.    .+|+++.|+++.
T Consensus        81 As~GeGLGNkFL~~IR----evdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIR----EVDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence            7777777777776654    558999999853

>PRK12289 GTPase RsgA; Reviewed

Probab=98.89  E-value=3.4e-09  Score=86.67  Aligned_cols=61  Identities=23%  Similarity=0.302  Sum_probs=41.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      ..++|+|++|||||||||+|++.....++..      ...+|.........  .+  ..|+||||+..+..
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~--~g--~~liDTPG~~~~~l  239 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP--NG--GLLADTPGFNQPDL  239 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC--CC--cEEEeCCCcccccc
Confidence            4689999999999999999998764332211      12245555444332  22  27999999987554

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.89  E-value=4.3e-08  Score=92.05  Aligned_cols=124  Identities=18%  Similarity=0.225  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccC------CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC----CcHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA----GSEFV   89 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~   89 (230)
                      +=+++||++|+||||+|+.- |...+....      ...+.|..|..     .-....+++||+|.+-...    .....
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-----wf~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-----WFTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-----EecCCEEEEcCCCccccCCCcccccHHH
Confidence            66899999999999999876 544322110      01122332222     2234567999999774432    22335


Q ss_pred             HHHHHHHHHhhc--CCccEEEEEEeCCCCCC--H--------HHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           90 GKEIVKCIGMAK--DGIHAVLVVFSVRSRFS--Q--------EEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        90 ~~~~~~~~~~~~--~~~~~il~v~d~~~~~~--~--------~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..+...++...  ..+++||+++++.+-++  .        ..+..+..+.+.+|..  .|+++|+||+|++.
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhc
Confidence            677777776553  45799999999864332  1        1244455666666654  49999999999985

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.88  E-value=2.3e-08  Score=91.43  Aligned_cols=103  Identities=16%  Similarity=0.150  Sum_probs=75.1

Q ss_pred             cHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC-----------------eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           31 GKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        31 GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      +||||+.+|.+.++  .....+++|++...+.+.....                 ..+.||||||+..+           
T Consensus       473 ~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F-----------  539 (1049)
T PRK14845        473 HNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF-----------  539 (1049)
T ss_pred             ccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-----------
Confidence            49999999999987  3334678888887776654321                 13899999996432           


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..........+|++++|+|+++.+...+...+..+...     ..|+++|+||+|+..
T Consensus       540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~  592 (1049)
T PRK14845        540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP  592 (1049)
T ss_pred             HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence            12223345678999999999877887777777766553     248999999999864

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=3.2e-09  Score=74.94  Aligned_cols=120  Identities=15%  Similarity=0.029  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--e------CCeEEEEEeCCCCCCCCCCcHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--K------DGQVVNVIDTPGLFDFSAGSEFVGK   91 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~------~~~~~~liDtPG~~~~~~~~~~~~~   91 (230)
                      .+.+.+|.+|+|||||+-..+...+...-.+.-++...........  +      ....+++|||+|..           
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE-----------   78 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE-----------   78 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH-----------
Confidence            4667889999999999877765543211111111111111111110  0      01268899999953           


Q ss_pred             HHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .++......++.+-++|+++|.++.-+... +.|+..++-.. ..-.+-++++.||+|+..
T Consensus        79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA-YcE~PDivlcGNK~DL~~  138 (219)
T KOG0081|consen   79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA-YCENPDIVLCGNKADLED  138 (219)
T ss_pred             HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh-ccCCCCEEEEcCccchhh
Confidence            344444455666778999999975433333 56666665532 222346999999999875

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.87  E-value=4.6e-09  Score=82.11  Aligned_cols=60  Identities=25%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccccc-C-----CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-A-----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~-~-----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      ..++++|.+|||||||||.|++.....++ .     ....+|.....+..  ..   ..++||||+..+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~---~~liDtPG~~~~~l  186 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG---GLIADTPGFNEFGL  186 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC---cEEEeCCCccccCC
Confidence            58899999999999999999987543322 1     12234555555443  12   37999999987554

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.86  E-value=7.2e-09  Score=84.06  Aligned_cols=63  Identities=25%  Similarity=0.365  Sum_probs=48.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   86 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~   86 (230)
                      ..+++++|-|+||||||||+|++.....++. .+|+|...+....    ...+.++||||+..+....
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~~~  194 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKL----DDGIYLLDTPGIIPPKFDD  194 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEc----CCCeEEecCCCcCCCCccc
Confidence            4789999999999999999999998744443 4577777665543    3348899999998766544

>TIGR00092 GTP-binding protein YchF

Probab=98.85  E-value=1.6e-08  Score=82.59  Aligned_cols=90  Identities=16%  Similarity=0.082  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS   83 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~   83 (230)
                      ..++|+|.|++|||||+|+|++....... ..+.+|..+....+...+.                ..+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a-~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA-NPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccC-CCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            68999999999999999999988641221 2244555555554444332                268899999998755


Q ss_pred             CCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      +........+...+.    .+|++++|+++.
T Consensus        82 s~g~Glgn~fL~~ir----~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIR----EVDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHH----hCCEEEEEEeCC
Confidence            444445555665554    448999999873

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.84  E-value=1e-08  Score=84.62  Aligned_cols=122  Identities=18%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccc----cccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAF----KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ..++++|.+|||||||||+|++....    ......+++|........    +..+.++||||+.....-...+..+-.+
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~----~~~~~l~DtPG~~~~~~~~~~l~~~~l~  230 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL----DDGHSLYDTPGIINSHQMAHYLDKKDLK  230 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe----CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence            68999999999999999999985421    111234455655443322    2346799999998642111111111111


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+. .......+.|.++....+.......++.+..   .  ...+.+.+++.+.+.
T Consensus       231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~h  280 (360)
T TIGR03597       231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNIH  280 (360)
T ss_pred             hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCceeE
Confidence            111 1134566777776653333222222222211   1  124566666666553

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.83  E-value=3e-08  Score=81.81  Aligned_cols=129  Identities=21%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEEee----CCeEEEEEeCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGL   79 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~   79 (230)
                      ..-++..++.+-..|||||..+|+........             ....++|...+.....+.    ....+.+|||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            44578899999999999999998754321110             124577877766655443    2257889999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHH
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED  159 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~  159 (230)
                      -|+.....       +++..|    .+.|+|+|++.......   +..+.-.+..+  --++.|+||+|+...+++.+.+
T Consensus        87 VDFsYEVS-------RSLAAC----EGalLvVDAsQGveAQT---lAN~YlAle~~--LeIiPViNKIDLP~Adpervk~  150 (603)
T COG0481          87 VDFSYEVS-------RSLAAC----EGALLVVDASQGVEAQT---LANVYLALENN--LEIIPVLNKIDLPAADPERVKQ  150 (603)
T ss_pred             cceEEEeh-------hhHhhC----CCcEEEEECccchHHHH---HHHHHHHHHcC--cEEEEeeecccCCCCCHHHHHH
Confidence            99874433       555555    58899999987776444   22222222222  2599999999998776554444


Q ss_pred             Hh
Q 026970          160 YL  161 (230)
Q Consensus       160 ~l  161 (230)
                      -+
T Consensus       151 eI  152 (603)
T COG0481         151 EI  152 (603)
T ss_pred             HH
Confidence            33

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.83  E-value=1.4e-08  Score=77.39  Aligned_cols=105  Identities=20%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      -+|+++|-|.+|||||+..|+...-  ...+...+|..+-...+. .++-.++++|.||+.+..+.......    .+..
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~-y~ga~IQllDLPGIieGAsqgkGRGR----Qvia  135 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIH-YNGANIQLLDLPGIIEGASQGKGRGR----QVIA  135 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEE-ecCceEEEecCcccccccccCCCCCc----eEEE
Confidence            7999999999999999999997753  222333444444444444 58899999999999864433221111    1123


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG  133 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~  133 (230)
                      ..+.+|.+++|+|++ +. ...+..++.-.+..|
T Consensus       136 vArtaDlilMvLDat-k~-e~qr~~le~ELe~vG  167 (364)
T KOG1486|consen  136 VARTADLILMVLDAT-KS-EDQREILEKELEAVG  167 (364)
T ss_pred             EeecccEEEEEecCC-cc-hhHHHHHHHHHHHhc
Confidence            346679999999997 32 233445544444445

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.8e-08  Score=84.40  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=82.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-----------------eCCeEEEEEeCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------KDGQVVNVIDTPGLF   80 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~   80 (230)
                      ..+.+.++|+-.+|||-|+..|.+.++...  ..+++|.......++.                 ..-..+.+|||||+.
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqeg--eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEG--EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccc--cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            347899999999999999999998876433  2345555443322211                 012358899999965


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      .|           .+.-......+|.+|+|+|+...+.+.....+..|+..     ..|+||.+||+|.+
T Consensus       552 sF-----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r-----ktpFivALNKiDRL  605 (1064)
T KOG1144|consen  552 SF-----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-----KTPFIVALNKIDRL  605 (1064)
T ss_pred             hh-----------hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc-----CCCeEEeehhhhhh
Confidence            42           23333444567899999999888988888888877775     34899999999987

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.5e-08  Score=76.26  Aligned_cols=128  Identities=17%  Similarity=0.278  Sum_probs=84.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc---------cc-----ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA---------FK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~---------~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      .+..+|+.+|+-..|||||..+|+..-.         +.     ......++|+......+.. ..+.+..+|+||+.|.
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDY   88 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHH
Confidence            3448999999999999999988864321         00     1122456777665555554 6789999999998631


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                                +.+.+ ...-+.|+.|+|+.+++..-+..+.-+- |.+..|-   +++++.+||+|+.+  +..+.+.++
T Consensus        89 ----------vKNMI-tgAaqmDgAILVVsA~dGpmPqTrEHiL-larqvGv---p~ivvflnK~Dmvd--d~ellelVe  151 (394)
T COG0050          89 ----------VKNMI-TGAAQMDGAILVVAATDGPMPQTREHIL-LARQVGV---PYIVVFLNKVDMVD--DEELLELVE  151 (394)
T ss_pred             ----------HHHHh-hhHHhcCccEEEEEcCCCCCCcchhhhh-hhhhcCC---cEEEEEEecccccC--cHHHHHHHH
Confidence                      11222 2233558899999987776666654443 3344463   37899999999997  555555544

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.1e-08  Score=83.91  Aligned_cols=119  Identities=23%  Similarity=0.248  Sum_probs=78.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC---------------CCccceeeeeEEEEe----eCCeEEEEEeC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---------------SSGVTSTCEMQRTVL----KDGQVVNVIDT   76 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~~----~~~~~~~liDt   76 (230)
                      +...++|+++|+-++|||+|+..|.+...+.....               ..+++....-.....    ...+-++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            34458999999999999999999987764222100               112222222111211    12346889999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ||+-++.       .+....    +..+|++++|+|+.+........+++...+.     ..++++|+||.|.+
T Consensus       205 PGHVnF~-------DE~ta~----l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFS-------DETTAS----LRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccch-------HHHHHH----hhhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence            9998754       233333    3455999999999878887777776654443     23799999999976

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.80  E-value=3.8e-07  Score=74.00  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      .+....|+|.|++|+|||||++.|.
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~   77 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALG   77 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHH
Confidence            3456899999999999999999864

>PRK00098 GTPase RsgA; Reviewed

Probab=98.80  E-value=3e-08  Score=79.77  Aligned_cols=60  Identities=28%  Similarity=0.357  Sum_probs=39.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      ...++++|++|+|||||+|+|++......+.-      ...+|.........    ....++||||+...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~----~~~~~~DtpG~~~~  229 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP----GGGLLIDTPGFSSF  229 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC----CCcEEEECCCcCcc
Confidence            46899999999999999999998765333211      11234433333222    23479999999854

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.79  E-value=1.5e-08  Score=76.19  Aligned_cols=125  Identities=21%  Similarity=0.300  Sum_probs=75.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .++|+++|.+|+||||+=..+. .+...-.....+.|.+....+..+..+--+.+||+.|..      ..+...+...-.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF-~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q~d   76 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIF-ANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQED   76 (295)
T ss_pred             cceEEEeccCCCCccccchhhh-hhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhcch
Confidence            3789999999999999644443 222111223455577766665555455677899988843      112222222233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH----HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE----EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~----~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ..+..++++++|+|+..+--..|    ...++.+.+   ..+...++..+.|.|+...+
T Consensus        77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~---~SP~AkiF~l~hKmDLv~~d  132 (295)
T KOG3886|consen   77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ---NSPEAKIFCLLHKMDLVQED  132 (295)
T ss_pred             hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHh---cCCcceEEEEEeechhcccc
Confidence            45677899999999974422222    233333333   33344789999999998643

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=1.8e-08  Score=87.20  Aligned_cols=121  Identities=25%  Similarity=0.330  Sum_probs=83.4

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccc--------------cCCCCccceeeeeEEEEeeCCeEEEEEeCCC
Q 026970           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (230)
Q Consensus        13 ~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG   78 (230)
                      ..+....+++.++.+-..|||||+.+|+..+...+              .....++|......... ..+..+.+||+||
T Consensus         3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-~~~~~~nlidspg   81 (887)
T KOG0467|consen    3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-HKDYLINLIDSPG   81 (887)
T ss_pred             CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-cCceEEEEecCCC
Confidence            34455668999999999999999999976654211              11234666665544433 2677899999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      +.|+.+..           .....-.|+.++++|+-+.........++..... +    ...++|+||+|.+
T Consensus        82 hvdf~sev-----------ssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-~----~~~~lvinkidrl  137 (887)
T KOG0467|consen   82 HVDFSSEV-----------SSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-G----LKPILVINKIDRL  137 (887)
T ss_pred             ccchhhhh-----------hhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-c----CceEEEEehhhhH
Confidence            99876322           2233345889999999888887777766633221 1    2588999999954

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.79  E-value=3e-08  Score=78.58  Aligned_cols=93  Identities=22%  Similarity=0.222  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCC
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPG   78 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG   78 (230)
                      ..+..+.++++|.+++|||||+|+|+.....  ....+.+|+++....+...+.                -.+.++|.+|
T Consensus        16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG   93 (391)
T KOG1491|consen   16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG   93 (391)
T ss_pred             CCCCcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence            3446689999999999999999999987763  223455677666555433221                2589999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeC
Q 026970           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV  113 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~  113 (230)
                      +-...+..+.+...|...+.    .+|+++.|+++
T Consensus        94 LvkGAs~G~GLGN~FLs~iR----~vDaifhVVr~  124 (391)
T KOG1491|consen   94 LVKGASAGEGLGNKFLSHIR----HVDAIFHVVRA  124 (391)
T ss_pred             cccCcccCcCchHHHHHhhh----hccceeEEEEe
Confidence            98777777777776666554    45888888765

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.79  E-value=3.1e-08  Score=79.32  Aligned_cols=60  Identities=32%  Similarity=0.391  Sum_probs=40.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (230)
                      ..++++|++|+|||||+|.|+|......+..      ...+|.........  .  ...++||||+.++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~--~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--G--GGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--C--CCEEEECCCCCccC
Confidence            6899999999999999999999765433211      12234444443332  1  23799999997644

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=5.8e-08  Score=69.18  Aligned_cols=115  Identities=12%  Similarity=0.076  Sum_probs=74.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      +.-+++++|--++|||||++.|-......-     -+|.++....... .+..++.+|.-|+.           +-+...
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-----vPTlHPTSE~l~I-g~m~ftt~DLGGH~-----------qArr~w   81 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-----VPTLHPTSEELSI-GGMTFTTFDLGGHL-----------QARRVW   81 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccccc-----CCCcCCChHHhee-cCceEEEEccccHH-----------HHHHHH
Confidence            346899999999999999999965543111     1133332222333 66788999988863           223555


Q ss_pred             HhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+++.+|++++.+|+.+  ++.+ .+..++.+... ..-.+.|++++.||+|...
T Consensus        82 kdyf~~v~~iv~lvda~d~er~~e-s~~eld~ll~~-e~la~vp~lilgnKId~p~  135 (193)
T KOG0077|consen   82 KDYFPQVDAIVYLVDAYDQERFAE-SKKELDALLSD-ESLATVPFLILGNKIDIPY  135 (193)
T ss_pred             HHHHhhhceeEeeeehhhHHHhHH-HHHHHHHHHhH-HHHhcCcceeecccccCCC
Confidence            677888899999999853  3322 23333333322 1124569999999999875

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.77  E-value=4.1e-08  Score=79.41  Aligned_cols=126  Identities=17%  Similarity=0.180  Sum_probs=68.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc------ccCCCCc-----------cceeeeeEEEE---------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK------SRASSSG-----------VTSTCEMQRTV---------------   64 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~------~~~~~~~-----------~t~~~~~~~~~---------------   64 (230)
                      ..+..|+++|++|+||||++..|.+.-...      .......           ......+....               
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            345799999999999999998886532110      0000000           00000111000               


Q ss_pred             -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 026970           65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY  139 (230)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (230)
                       ...+..+.||||||.....   .....++.+.....    ...++.+++|++++..  .........+.+.+     ..
T Consensus       192 ~~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~-----~~  261 (318)
T PRK10416        192 AKARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAV-----GL  261 (318)
T ss_pred             HHhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhC-----CC
Confidence             0134579999999986533   33334444433221    2356889999999733  22222223333322     35


Q ss_pred             EEEEEeCCCCCCC
Q 026970          140 MIVVFTGGDELED  152 (230)
Q Consensus       140 ~ivv~tk~D~~~~  152 (230)
                      .-+|+||.|....
T Consensus       262 ~giIlTKlD~t~~  274 (318)
T PRK10416        262 TGIILTKLDGTAK  274 (318)
T ss_pred             CEEEEECCCCCCC
Confidence            7799999997653

>cd01859 MJ1464 MJ1464

Probab=98.75  E-value=3.6e-08  Score=71.81  Aligned_cols=57  Identities=30%  Similarity=0.419  Sum_probs=39.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   79 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (230)
                      ...+++++|.+|+||||++|.+.+........ ..+.|...++..    .+..+.++||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQLVK----ITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeEEEE----cCCCEEEEECcCC
Confidence            44788999999999999999999865433222 233444433222    2346899999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.73  E-value=3.6e-08  Score=80.78  Aligned_cols=123  Identities=20%  Similarity=0.160  Sum_probs=67.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCC---cc--------ceeeeeEEE-------------EeeC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSS---GV--------TSTCEMQRT-------------VLKD   67 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~------~~~~~~~~---~~--------t~~~~~~~~-------------~~~~   67 (230)
                      .+.+|+|+|++|+||||++..|+..-.      ........   ..        .....+...             ....
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            347899999999999999999864211      00000000   00        000000000             0001


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.||||||...   .......++.+.+...  .+|.+++|++++.. .......++.+..      ...--+|+||.
T Consensus       320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk-~~d~~~i~~~F~~------~~idglI~TKL  387 (436)
T PRK11889        320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKF  387 (436)
T ss_pred             CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccC-hHHHHHHHHHhcC------CCCCEEEEEcc
Confidence            34789999999864   2344455565555433  35788899988622 2222333333332      23567999999


Q ss_pred             CCCCC
Q 026970          148 DELED  152 (230)
Q Consensus       148 D~~~~  152 (230)
                      |....
T Consensus       388 DET~k  392 (436)
T PRK11889        388 DETAS  392 (436)
T ss_pred             cCCCC
Confidence            98764

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.72  E-value=2.1e-07  Score=73.75  Aligned_cols=79  Identities=20%  Similarity=0.186  Sum_probs=47.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv  142 (230)
                      .+..+.||||||....   +.....++.+.....    ...+|.+++|++++.  ..........+.+.++     ..-+
T Consensus       153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-----~~g~  222 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-----LTGI  222 (272)
T ss_pred             CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-----CCEE
Confidence            4468899999998753   333444444443322    234789999999962  3333333344443332     5779


Q ss_pred             EEeCCCCCCCChh
Q 026970          143 VFTGGDELEDNDE  155 (230)
Q Consensus       143 v~tk~D~~~~~~~  155 (230)
                      |+||.|....-+.
T Consensus       223 IlTKlDe~~~~G~  235 (272)
T TIGR00064       223 ILTKLDGTAKGGI  235 (272)
T ss_pred             EEEccCCCCCccH
Confidence            9999998754333

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.66  E-value=4.8e-08  Score=81.29  Aligned_cols=63  Identities=32%  Similarity=0.336  Sum_probs=49.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   86 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~   86 (230)
                      ..+|+++|-++|||||+||+|.|.+...+ .+.+|-|++.+...+    ...+.+.|+||+--++...
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf~~  376 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPSFSP  376 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEc----CCCceecCCCCccccCCCc
Confidence            58999999999999999999999986433 346677777666543    3467899999998766543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.66  E-value=1e-07  Score=77.44  Aligned_cols=76  Identities=18%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.||||||....   ......++.......  .+|.+++|+++...  .......+.+.+.++     ..-+|+||.
T Consensus       222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~~--~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl  289 (336)
T PRK14974        222 GIDVVLIDTAGRMHT---DANLMDELKKIVRVT--KPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV  289 (336)
T ss_pred             CCCEEEEECCCccCC---cHHHHHHHHHHHHhh--CCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence            456899999998743   234455555544333  46888999998632  222333333333322     577999999


Q ss_pred             CCCCCChh
Q 026970          148 DELEDNDE  155 (230)
Q Consensus       148 D~~~~~~~  155 (230)
                      |....-+.
T Consensus       290 D~~~~~G~  297 (336)
T PRK14974        290 DADAKGGA  297 (336)
T ss_pred             cCCCCccH
Confidence            98754333

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.66  E-value=1.7e-07  Score=76.73  Aligned_cols=122  Identities=22%  Similarity=0.249  Sum_probs=69.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccccc-CCCCccceeeeeEE----------------------------EEeeCCe
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQR----------------------------TVLKDGQ   69 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~----------------------------~~~~~~~   69 (230)
                      ...|+|+|+|||||||.+-.|...-..... ..-.-+|.+.-...                            +......
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            689999999999999999888654320111 11111122211110                            0111345


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~  149 (230)
                      .++||||.|....   +.....++...+..+ .. .-+.+|++++..     ..-++.+...|+.  .+.--+++||.|.
T Consensus       283 d~ILVDTaGrs~~---D~~~i~el~~~~~~~-~~-i~~~Lvlsat~K-----~~dlkei~~~f~~--~~i~~~I~TKlDE  350 (407)
T COG1419         283 DVILVDTAGRSQY---DKEKIEELKELIDVS-HS-IEVYLVLSATTK-----YEDLKEIIKQFSL--FPIDGLIFTKLDE  350 (407)
T ss_pred             CEEEEeCCCCCcc---CHHHHHHHHHHHhcc-cc-ceEEEEEecCcc-----hHHHHHHHHHhcc--CCcceeEEEcccc
Confidence            7999999998643   344566666666555 22 346667777632     1223333333442  2356689999998


Q ss_pred             CCC
Q 026970          150 LED  152 (230)
Q Consensus       150 ~~~  152 (230)
                      ...
T Consensus       351 T~s  353 (407)
T COG1419         351 TTS  353 (407)
T ss_pred             cCc
Confidence            764

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=9.8e-08  Score=68.56  Aligned_cols=120  Identities=13%  Similarity=0.059  Sum_probs=71.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccc-cc--CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFK-SR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~-~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....|+++|.-++|||||+.++-....-. .+  ++....|.......+.. +...+.+||.-|..           .+.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe-----------~lr   83 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQE-----------SLR   83 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChH-----------HHH
Confidence            34789999999999999997763221100 11  12223344444555554 46789999987742           223


Q ss_pred             HHHHhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+|..+|+++|++|+++  ++.......-+.+..-  ..-..|+++++||.|+-.
T Consensus        84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E--~leg~p~L~lankqd~q~  140 (197)
T KOG0076|consen   84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENE--KLEGAPVLVLANKQDLQN  140 (197)
T ss_pred             HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHH--HhcCCchhhhcchhhhhh
Confidence            344456667799999999974  3333322222222111  112348999999999865

>PRK13796 GTPase YqeH; Provisional

Probab=98.64  E-value=6.7e-08  Score=79.89  Aligned_cols=59  Identities=29%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc----ccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA----FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (230)
                      ...++++|.+|||||||||+|++...    .......+++|.......+  .+  ...++||||+..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~~--~~~l~DTPGi~~  222 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--DD--GSFLYDTPGIIH  222 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--CC--CcEEEECCCccc
Confidence            35899999999999999999986431    1111234556665443332  12  347999999964

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.62  E-value=8.4e-08  Score=74.56  Aligned_cols=77  Identities=17%  Similarity=0.068  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc-ccccceEEEEEeCC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG-KKIFDYMIVVFTGG  147 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivv~tk~  147 (230)
                      .+.++||||..+.    ......+...+.... ...-++++++|+. .++......-..+..... -...-|.+.|+||+
T Consensus        92 ~y~l~DtPGQiEl----f~~~~~~~~i~~~L~~~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~  166 (238)
T PF03029_consen   92 DYLLFDTPGQIEL----FTHSDSGRKIVERLQKNGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI  166 (238)
T ss_dssp             SEEEEE--SSHHH----HHHSHHHHHHHHTSSS----EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred             cEEEEeCCCCEEE----EEechhHHHHHHHHhhhcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence            6899999997642    111222222222222 2334788888987 443322111111111110 11234899999999


Q ss_pred             CCCC
Q 026970          148 DELE  151 (230)
Q Consensus       148 D~~~  151 (230)
                      |+.+
T Consensus       167 Dl~~  170 (238)
T PF03029_consen  167 DLLS  170 (238)
T ss_dssp             GGS-
T ss_pred             Cccc
Confidence            9986

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=2.6e-07  Score=78.41  Aligned_cols=187  Identities=15%  Similarity=0.187  Sum_probs=116.0

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCC
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG   78 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG   78 (230)
                      +....++|++..+-.+||||+-+.++........                ....++|.........| ...++.+|||||
T Consensus        35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPG  113 (721)
T KOG0465|consen   35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPG  113 (721)
T ss_pred             chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCC
Confidence            3456689999999999999999888654432111                11246676666666666 678999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHH
Q 026970           79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE  158 (230)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~  158 (230)
                      +.|+-...+       ++    .+-.|+.++|+++-.+.........+.++++ +    .|.+..+||+|.+..+.....
T Consensus       114 HvDFT~EVe-------RA----LrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-~----vP~i~FiNKmDRmGa~~~~~l  177 (721)
T KOG0465|consen  114 HVDFTFEVE-------RA----LRVLDGAVLVLDAVAGVESQTETVWRQMKRY-N----VPRICFINKMDRMGASPFRTL  177 (721)
T ss_pred             ceeEEEEeh-------hh----hhhccCeEEEEEcccceehhhHHHHHHHHhc-C----CCeEEEEehhhhcCCChHHHH
Confidence            998765544       33    3344777888877668887777777777775 2    378899999999976655444


Q ss_pred             HHhcccCC--c-hhh---hhHHHHHhHHHHHHHcC--------C-----CcHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 026970          159 DYLGRECP--K-PLK---KGATKLRDQQFEVDSLK--------G-----YSKREISELKEQMHKSYEDQLKRITEMCAG  218 (230)
Q Consensus       159 ~~l~~~~~--~-~l~---~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (230)
                      +.+.+...  . .++   ..-..+.++.++++...        +     -..+.+.++-.+.++++-+.+...-+.+.+
T Consensus       178 ~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e  256 (721)
T KOG0465|consen  178 NQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAE  256 (721)
T ss_pred             HHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            44433111  1 111   11124556666664431        1     234555555555555554445444444433

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.58  E-value=2.4e-07  Score=76.15  Aligned_cols=135  Identities=19%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccC-CCCccceee------------------eeEEE----------EeeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTC------------------EMQRT----------VLKDG   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~-~~~~~t~~~------------------~~~~~----------~~~~~   68 (230)
                      ....++|+|++|+||||++..|.+......+. ...-++.+.                  .+...          ....+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~  215 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN  215 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence            34699999999999999999987542110000 000000000                  00000          00134


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc---cceEEEEEe
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI---FDYMIVVFT  145 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ivv~t  145 (230)
                      ..+.+|||||....+   ....+.+. .+.. ...+.-.++|++++..... ....+..+....+.+.   ....-+|+|
T Consensus       216 ~DlVLIDTaG~~~~d---~~l~e~La-~L~~-~~~~~~~lLVLsAts~~~~-l~evi~~f~~~~~~p~~~~~~~~~~I~T  289 (374)
T PRK14722        216 KHMVLIDTIGMSQRD---RTVSDQIA-MLHG-ADTPVQRLLLLNATSHGDT-LNEVVQAYRSAAGQPKAALPDLAGCILT  289 (374)
T ss_pred             CCEEEEcCCCCCccc---HHHHHHHH-HHhc-cCCCCeEEEEecCccChHH-HHHHHHHHHHhhcccccccCCCCEEEEe
Confidence            578999999986422   22223222 2222 2234567889998744322 1233444444322110   123568899


Q ss_pred             CCCCCCCChhhHH
Q 026970          146 GGDELEDNDETLE  158 (230)
Q Consensus       146 k~D~~~~~~~~~~  158 (230)
                      |.|....-+..+.
T Consensus       290 KlDEt~~~G~~l~  302 (374)
T PRK14722        290 KLDEASNLGGVLD  302 (374)
T ss_pred             ccccCCCccHHHH
Confidence            9998764343333

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.57  E-value=5.3e-07  Score=75.25  Aligned_cols=126  Identities=17%  Similarity=0.217  Sum_probs=65.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCc-ccee------------------eeeEE----------EEeeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTST------------------CEMQR----------TVLKDG   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~------------------~~~~~----------~~~~~~   68 (230)
                      .+.+|+|+|++|+||||++..|.+......+....+ ++.+                  .....          .....+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            457999999999999999998876421000000000 0000                  00000          000134


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      ..+.+|||+|.....   .....++... .. ....+-.++|++++..  ..   .+..+...|..  ....-+|+||.|
T Consensus       270 ~d~VLIDTaGrsqrd---~~~~~~l~~l-~~-~~~~~~~~LVl~at~~--~~---~~~~~~~~f~~--~~~~~~I~TKlD  337 (420)
T PRK14721        270 KHMVLIDTVGMSQRD---QMLAEQIAML-SQ-CGTQVKHLLLLNATSS--GD---TLDEVISAYQG--HGIHGCIITKVD  337 (420)
T ss_pred             CCEEEecCCCCCcch---HHHHHHHHHH-hc-cCCCceEEEEEcCCCC--HH---HHHHHHHHhcC--CCCCEEEEEeee
Confidence            468999999986422   2233333332 21 1234567888888722  22   22222233321  235679999999


Q ss_pred             CCCCChh
Q 026970          149 ELEDNDE  155 (230)
Q Consensus       149 ~~~~~~~  155 (230)
                      ....-+.
T Consensus       338 Et~~~G~  344 (420)
T PRK14721        338 EAASLGI  344 (420)
T ss_pred             CCCCccH
Confidence            8764333

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=6.4e-07  Score=65.36  Aligned_cols=116  Identities=20%  Similarity=0.113  Sum_probs=73.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--e-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--K-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....++++|..|.||||++++.+-..+-...    ..|.........+  . +..++.+|||.|..-...-.+       
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y----~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd-------   77 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTY----PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD-------   77 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecc----cCcceeEEeeeeeecccCcEEEEeeecccceeeccccc-------
Confidence            4689999999999999999887755442211    1233222222221  1 236889999999754322111       


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          .++-+..+.++++|++.+++-.. ..+-+.+.+.++.   .|++++.||.|--.
T Consensus        78 ----gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~  128 (216)
T KOG0096|consen   78 ----GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA  128 (216)
T ss_pred             ----ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence                22233446788899987777554 4555566665553   48999999999654

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.56  E-value=3e-07  Score=81.50  Aligned_cols=124  Identities=21%  Similarity=0.217  Sum_probs=65.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccC-CCCccceee------------------eeEE----------EEeeCCe
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTC------------------EMQR----------TVLKDGQ   69 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~-~~~~~t~~~------------------~~~~----------~~~~~~~   69 (230)
                      +..|+|+|++|+||||++..|++......+. ...-++.+.                  .+..          +....+.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~  264 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK  264 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence            4689999999999999999988643211100 000000000                  0000          0001334


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      .++||||||....+   ..+.+++.....  ...++-+++|++++..  ..+ ...++.+....+   ....-+|+||.|
T Consensus       265 D~VLIDTAGRs~~d---~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~---~~i~glIlTKLD  334 (767)
T PRK14723        265 HLVLIDTVGMSQRD---RNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG---EDVDGCIITKLD  334 (767)
T ss_pred             CEEEEeCCCCCccC---HHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc---CCCCEEEEeccC
Confidence            78999999976432   333344433322  2345678999998732  222 223333332211   124568999999


Q ss_pred             CCCC
Q 026970          149 ELED  152 (230)
Q Consensus       149 ~~~~  152 (230)
                      ....
T Consensus       335 Et~~  338 (767)
T PRK14723        335 EATH  338 (767)
T ss_pred             CCCC
Confidence            8754

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.53  E-value=1e-06  Score=71.11  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .....|+++|++|+|||||++.|..
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999999764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.52  E-value=9.7e-07  Score=73.26  Aligned_cols=126  Identities=18%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccc----c---cCCC--Ccc---------ceeeeeEEE---------EeeCCeEE
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFK----S---RASS--SGV---------TSTCEMQRT---------VLKDGQVV   71 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~----~---~~~~--~~~---------t~~~~~~~~---------~~~~~~~~   71 (230)
                      +..++++|++|+||||++..|+......    .   ....  .+.         .........         ....+..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            4679999999999999998886422100    0   0000  000         000000000         00135578


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      .||||||+...+   .....++...+.... ..++-+++|++++... .......+    .|.  .....-+|+||.|..
T Consensus       303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~----~f~--~~~~~glIlTKLDEt  372 (432)
T PRK12724        303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLK----AYE--SLNYRRILLTKLDEA  372 (432)
T ss_pred             EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHH----Hhc--CCCCCEEEEEcccCC
Confidence            999999986432   234444545443332 2245688899987331 11222222    222  123577999999987


Q ss_pred             CCCh
Q 026970          151 EDND  154 (230)
Q Consensus       151 ~~~~  154 (230)
                      ..-+
T Consensus       373 ~~~G  376 (432)
T PRK12724        373 DFLG  376 (432)
T ss_pred             CCcc
Confidence            5433

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=8.2e-07  Score=70.18  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEE--------------------E-----eeCCeEE
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRT--------------------V-----LKDGQVV   71 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~--------------------~-----~~~~~~~   71 (230)
                      ...+|+.+|+-..|||||..+|+|..... +..-..++|....|...                    .     ..--+.+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            45899999999999999999999864310 10011122222111110                    0     0011478


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-EEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      .|+|.||+.           -+...+-....-.|+.++|+.+++++.+ ...+-+-.| +..|   .+++++|-||.|+.
T Consensus        89 SfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig---ik~iiIvQNKIDlV  153 (415)
T COG5257          89 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIG---IKNIIIVQNKIDLV  153 (415)
T ss_pred             EEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhc---cceEEEEeccccee
Confidence            999999963           1112221222234889999998755433 333333332 3335   34899999999998


Q ss_pred             C
Q 026970          151 E  151 (230)
Q Consensus       151 ~  151 (230)
                      .
T Consensus       154 ~  154 (415)
T COG5257         154 S  154 (415)
T ss_pred             c
Confidence            6

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=1e-06  Score=70.07  Aligned_cols=128  Identities=16%  Similarity=0.216  Sum_probs=84.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc------c---c-----ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA------F---K-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~------~---~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      .+..+|+-||+-..|||||-.+|+....      +   .     ......++|+......+.. ..+.+.-+|+||+.|+
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHHH
Confidence            4558999999999999999888753211      0   0     1122456676655444443 5678889999998641


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                                 .+-+.....+-|+.|+|+.+++..-+..++-+-.-++ .|-   +++++.+||.|..+  ++...+.++
T Consensus       131 -----------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV---~~ivvfiNKvD~V~--d~e~leLVE  193 (449)
T KOG0460|consen  131 -----------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGV---KHIVVFINKVDLVD--DPEMLELVE  193 (449)
T ss_pred             -----------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCC---ceEEEEEecccccC--CHHHHHHHH
Confidence                       1222233345689999999987776666655543333 464   47999999999996  555555555

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.49  E-value=2.2e-06  Score=73.85  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +..+-++..+.-.++  -+|+|||++|+|||||++.|.|...
T Consensus        15 ~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~   54 (530)
T COG0488          15 DRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELE   54 (530)
T ss_pred             CceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCc
Confidence            344445544544443  7999999999999999999999864

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.49  E-value=1.1e-06  Score=64.10  Aligned_cols=22  Identities=41%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      .++++|..|+|||||++.++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            6789999999999999998765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.48  E-value=5.6e-07  Score=70.81  Aligned_cols=72  Identities=28%  Similarity=0.292  Sum_probs=50.1

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (230)
                      .+...++.++|-||+|||||||++.........    -..+++|...... +...+...++++||||...++..+.+
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~~e  215 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVDVE  215 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCCHH
Confidence            345689999999999999999998544321111    1245667665542 22336678999999999988766654

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=3.3e-08  Score=80.38  Aligned_cols=118  Identities=20%  Similarity=0.277  Sum_probs=82.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc----------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (230)
                      ..-++|+++.+-.+||||.-..|+......                ......++|.......+.| .|.++.+|||||+-
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghv  113 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHV  113 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcc
Confidence            344799999999999999988875432211                0112357777777777777 88999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      |+....+       +|+    +-.|+++.|+|++..........++.-     .....|.+..+||+|++.
T Consensus       114 df~leve-------rcl----rvldgavav~dasagve~qtltvwrqa-----dk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  114 DFRLEVE-------RCL----RVLDGAVAVFDASAGVEAQTLTVWRQA-----DKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             eEEEEHH-------HHH----HHhcCeEEEEeccCCcccceeeeehhc-----cccCCchhhhhhhhhhhh
Confidence            8775444       444    444899999999867665443333222     223457888899999874

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.47  E-value=9.1e-07  Score=70.55  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=72.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCcc-------------cccc--------CCCCccceee-eeEE-----------
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRA-------------FKSR--------ASSSGVTSTC-EMQR-----------   62 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~-------------~~~~--------~~~~~~t~~~-~~~~-----------   62 (230)
                      .+.+..|+++|-+|+||||.|-.|+..-.             |...        ....++..-. ....           
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            44578999999999999999987753211             0000        0000000000 0000           


Q ss_pred             EEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEE
Q 026970           63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI  141 (230)
Q Consensus        63 ~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i  141 (230)
                      .-...+..+.++||.|-......-..-.+.+.+.+....+ -+|-+++++|++.  ..+.....+.+.+..+     -.-
T Consensus       216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt--Gqnal~QAk~F~eav~-----l~G  288 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT--GQNALSQAKIFNEAVG-----LDG  288 (340)
T ss_pred             HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc--ChhHHHHHHHHHHhcC-----Cce
Confidence            0001345799999999876544333334444555444433 3577999999973  3344455556666554     466


Q ss_pred             EEEeCCCCC
Q 026970          142 VVFTGGDEL  150 (230)
Q Consensus       142 vv~tk~D~~  150 (230)
                      +|+||.|-.
T Consensus       289 iIlTKlDgt  297 (340)
T COG0552         289 IILTKLDGT  297 (340)
T ss_pred             EEEEecccC
Confidence            999999954

>PTZ00099 rab6; Provisional

Probab=98.44  E-value=1.4e-06  Score=64.78  Aligned_cols=70  Identities=21%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      ..+.||||||...+           ......++.++|++|+|+|++++.+... ..++..+.+..+.  ..|+++|+||+
T Consensus        29 v~l~iwDt~G~e~~-----------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK~   95 (176)
T PTZ00099         29 VRLQLWDTAGQERF-----------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNKT   95 (176)
T ss_pred             EEEEEEECCChHHh-----------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECc
Confidence            57889999996432           2334456789999999999986544333 3455555544332  35789999999


Q ss_pred             CCCC
Q 026970          148 DELE  151 (230)
Q Consensus       148 D~~~  151 (230)
                      |+..
T Consensus        96 DL~~   99 (176)
T PTZ00099         96 DLGD   99 (176)
T ss_pred             cccc
Confidence            9864

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.43  E-value=1.4e-06  Score=71.41  Aligned_cols=125  Identities=19%  Similarity=0.114  Sum_probs=66.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc------cc--cccCCCCcc---------ceeeeeEEEEe-------------eC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR------AF--KSRASSSGV---------TSTCEMQRTVL-------------KD   67 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~------~~--~~~~~~~~~---------t~~~~~~~~~~-------------~~   67 (230)
                      .+..++++|++|+||||++..|....      +.  .......+.         .....+.....             ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            45789999999999999998886321      10  000000000         00000110000             02


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..++||||||....   ......++.......  .+|.+++|++++  ...  ....+.+.. |.  .....-+|+||.
T Consensus       285 ~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~--~d~~~i~~~-f~--~l~i~glI~TKL  352 (407)
T PRK12726        285 CVDHILIDTVGRNYL---AEESVSEISAYTDVV--HPDLTCFTFSSG--MKS--ADVMTILPK-LA--EIPIDGFIITKM  352 (407)
T ss_pred             CCCEEEEECCCCCcc---CHHHHHHHHHHhhcc--CCceEEEECCCc--ccH--HHHHHHHHh-cC--cCCCCEEEEEcc
Confidence            457899999998642   344445555544333  456777777764  222  223333333 32  123567899999


Q ss_pred             CCCCCCh
Q 026970          148 DELEDND  154 (230)
Q Consensus       148 D~~~~~~  154 (230)
                      |....-+
T Consensus       353 DET~~~G  359 (407)
T PRK12726        353 DETTRIG  359 (407)
T ss_pred             cCCCCcc
Confidence            9875433

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.40  E-value=1.3e-06  Score=73.52  Aligned_cols=132  Identities=23%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc-c----ccc---CCCCcc------c-----eeeeeEE----------EEeeCCe
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA-F----KSR---ASSSGV------T-----STCEMQR----------TVLKDGQ   69 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~-~----~~~---~~~~~~------t-----~~~~~~~----------~~~~~~~   69 (230)
                      ...++|+|++|+||||++..|..... .    ...   ......      .     ....+..          +....+.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~  300 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC  300 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence            46899999999999999877754321 0    000   000000      0     0000000          0001245


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~  149 (230)
                      .+.||||||....   .......+...+... .....+++|++++.  ...+   +..+...|..-  ...-+|+||.|.
T Consensus       301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~--~~~~---l~~~~~~f~~~--~~~~vI~TKlDe  369 (424)
T PRK05703        301 DVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATT--KYED---LKDIYKHFSRL--PLDGLIFTKLDE  369 (424)
T ss_pred             CEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCC--CHHH---HHHHHHHhCCC--CCCEEEEecccc
Confidence            7899999998642   233344455554422 22356677888762  2222   22222333311  234699999998


Q ss_pred             CCCChhhHHHHhc
Q 026970          150 LEDNDETLEDYLG  162 (230)
Q Consensus       150 ~~~~~~~~~~~l~  162 (230)
                      ...-+ .+.+++.
T Consensus       370 t~~~G-~i~~~~~  381 (424)
T PRK05703        370 TSSLG-SILSLLI  381 (424)
T ss_pred             ccccc-HHHHHHH
Confidence            75433 3444433

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.40  E-value=1.8e-06  Score=73.57  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....|+|+|++|+||||++..|..
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988864

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.39  E-value=2.2e-06  Score=72.10  Aligned_cols=71  Identities=20%  Similarity=0.160  Sum_probs=42.7

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      ..++|+||||....   .....+++.......  .+|.+++|+|++..  .   ..+..... |... ....-+|+||.|
T Consensus       176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD  243 (437)
T PRK00771        176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD  243 (437)
T ss_pred             CCEEEEECCCcccc---hHHHHHHHHHHHHHh--cccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence            37899999997642   344555555543333  46789999998633  2   22333333 2221 124668899999


Q ss_pred             CCC
Q 026970          149 ELE  151 (230)
Q Consensus       149 ~~~  151 (230)
                      ...
T Consensus       244 ~~a  246 (437)
T PRK00771        244 GTA  246 (437)
T ss_pred             CCC
Confidence            754

>PRK10867 signal recognition particle protein; Provisional

Probab=98.38  E-value=1.7e-06  Score=72.68  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=42.1

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.|+||||....   ++....++.......  .++.+++|+|+..  ........+.+.+.+     ...-+|+||.
T Consensus       183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKl  250 (433)
T PRK10867        183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKL  250 (433)
T ss_pred             CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence            356899999997642   233444444443322  4577899999752  223333344444322     2466888999


Q ss_pred             CCCC
Q 026970          148 DELE  151 (230)
Q Consensus       148 D~~~  151 (230)
                      |...
T Consensus       251 D~~~  254 (433)
T PRK10867        251 DGDA  254 (433)
T ss_pred             cCcc
Confidence            9643

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.38  E-value=4.2e-07  Score=70.25  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      .+..+|++.|++|+|||||++.|.
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~   50 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALI   50 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHH
Confidence            355899999999999999999984

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.36  E-value=3.1e-06  Score=59.85  Aligned_cols=121  Identities=17%  Similarity=0.070  Sum_probs=72.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .-..+|+++|.+..|||||+-...+...........++........+. .....+.+||.-|..           ++.+.
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~~-----------~~~n~   85 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQR-----------EFINM   85 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCcH-----------hhhcc
Confidence            345899999999999999998888765421111111211111111111 123467899988843           33444


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +...-.++-++||++|.+.+.+-..  ..++.++..|.+...--++|.||-|.+-
T Consensus        86 lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi  138 (205)
T KOG1673|consen   86 LPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFI  138 (205)
T ss_pred             CceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhh
Confidence            4444456678999999986655433  3445555544332234568999999874

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.36  E-value=1.3e-06  Score=68.92  Aligned_cols=125  Identities=20%  Similarity=0.153  Sum_probs=68.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccc---cc---cCCCC-----------ccceeeeeEEEE-------------eeC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAF---KS---RASSS-----------GVTSTCEMQRTV-------------LKD   67 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~---~~---~~~~~-----------~~t~~~~~~~~~-------------~~~   67 (230)
                      +..+++++|++|+||||++..|++....   ..   .....           .......+....             ...
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            4479999999999999999888654210   00   00000           000000111000             002


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.++||||....   ......++...+...  .++.+++|++++.. .......++.    |..  ...--+|+||.
T Consensus       154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~-~~d~~~~~~~----f~~--~~~~~~I~TKl  221 (270)
T PRK06731        154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITN----FKD--IHIDGIVFTKF  221 (270)
T ss_pred             CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC-HHHHHHHHHH----hCC--CCCCEEEEEee
Confidence            457899999997642   244455555554433  45678999998622 2122233332    332  23567999999


Q ss_pred             CCCCCCh
Q 026970          148 DELEDND  154 (230)
Q Consensus       148 D~~~~~~  154 (230)
                      |....-+
T Consensus       222 Det~~~G  228 (270)
T PRK06731        222 DETASSG  228 (270)
T ss_pred             cCCCCcc
Confidence            9876433

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.36  E-value=9.4e-06  Score=67.37  Aligned_cols=124  Identities=18%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc----------cccccCCC-C-cc--------c-eeeeeEEE----------Eee
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR----------AFKSRASS-S-GV--------T-STCEMQRT----------VLK   66 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~----------~~~~~~~~-~-~~--------t-~~~~~~~~----------~~~   66 (230)
                      .+..|+++|++|+||||++..|+..-          +....... . +.        . ....+...          ...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            35789999999999999998876321          10000000 0 00        0 00000000          001


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeC
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk  146 (230)
                      .+..+.+|||||....   +.....++...+....+ .+-+++|++++..  ..+  ..+.+.+. ..  ....-+|+||
T Consensus       253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~-~~e~~LVlsat~~--~~~--~~~~~~~~-~~--~~~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGR-DAEFHLAVSSTTK--TSD--VKEIFHQF-SP--FSYKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCC--HHH--HHHHHHHh-cC--CCCCEEEEEe
Confidence            3457999999998642   23234555565554432 3367899998743  222  22333333 21  1256799999


Q ss_pred             CCCCCC
Q 026970          147 GDELED  152 (230)
Q Consensus       147 ~D~~~~  152 (230)
                      .|....
T Consensus       322 lDet~~  327 (388)
T PRK12723        322 LDETTC  327 (388)
T ss_pred             ccCCCc
Confidence            998754

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.35  E-value=5.4e-07  Score=69.11  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      -+++++|-+.+||||++..|+|...  ...+..++|. ..+.......+-++.+.|.||+.+...+.....+++..    
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s--~vasyefttl-~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia----  132 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFS--EVAAYEFTTL-TTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA----  132 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCC--ccccccceeE-EEecceEeccccceeeecCcchhcccccCCCCccEEEE----
Confidence            4899999999999999999998753  2223333333 33333333478899999999998754433322232222    


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ceEEEEEeCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVVFTGGD  148 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivv~tk~D  148 (230)
                      ..+.++.+++|+|+-.+++  ...+++.-.+.||-+.. .|--+.+.|-|
T Consensus       133 vartcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKd  180 (358)
T KOG1487|consen  133 VARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKD  180 (358)
T ss_pred             EeecccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCccccccc
Confidence            2345578899999864544  45666666666774422 23334444444

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=9.4e-06  Score=75.14  Aligned_cols=123  Identities=17%  Similarity=0.208  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccccc------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc----HHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS----EFV   89 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~----~~~   89 (230)
                      +=.++||++|+||||++..- |...+...      ....+ |..|.     +.-+..-++|||.|-+-...+.    ...
T Consensus       126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-----wwf~deaVlIDtaGry~~q~s~~~~~~~~  198 (1188)
T COG3523         126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-----WWFTDEAVLIDTAGRYITQDSADEVDRAE  198 (1188)
T ss_pred             CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-----cccccceEEEcCCcceecccCcchhhHHH
Confidence            45689999999999988553 33221111      11111 33333     2234566899999987554322    223


Q ss_pred             HHHHHHHHHhh--cCCccEEEEEEeCCCCCCHHH----------HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           90 GKEIVKCIGMA--KDGIHAVLVVFSVRSRFSQEE----------EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~il~v~d~~~~~~~~~----------~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +..+...++..  ...+++|++.+++.+-.+...          +.-++.+.+.++-  ..|+++++||.|++.
T Consensus       199 W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~--~~PVYl~lTk~Dll~  270 (1188)
T COG3523         199 WLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA--RLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc--CCceEEEEecccccc
Confidence            44555555543  345799999998753322221          1224445555443  349999999999987

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.34  E-value=4e-06  Score=69.13  Aligned_cols=71  Identities=18%  Similarity=0.171  Sum_probs=49.0

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      ..+.++||.|-..   -++.+..++...-...  .||-+|+|+|+.  ..+.-....+.+.+..+     -.-+|+||.|
T Consensus       183 ~DvvIvDTAGRl~---ide~Lm~El~~Ik~~~--~P~E~llVvDam--~GQdA~~~A~aF~e~l~-----itGvIlTKlD  250 (451)
T COG0541         183 YDVVIVDTAGRLH---IDEELMDELKEIKEVI--NPDETLLVVDAM--IGQDAVNTAKAFNEALG-----ITGVILTKLD  250 (451)
T ss_pred             CCEEEEeCCCccc---ccHHHHHHHHHHHhhc--CCCeEEEEEecc--cchHHHHHHHHHhhhcC-----CceEEEEccc
Confidence            4799999999764   3455666666654433  678999999986  33444555566666554     4668999999


Q ss_pred             CCC
Q 026970          149 ELE  151 (230)
Q Consensus       149 ~~~  151 (230)
                      --.
T Consensus       251 Gda  253 (451)
T COG0541         251 GDA  253 (451)
T ss_pred             CCC
Confidence            653

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.29  E-value=2.4e-06  Score=72.51  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..++|+|++|+||||++..|++.
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHH
Confidence            468999999999999999998754

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.28  E-value=5.3e-07  Score=73.03  Aligned_cols=66  Identities=21%  Similarity=0.259  Sum_probs=49.1

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   85 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (230)
                      +..+..-|++||-+++||||+||+|-...+....+ .++-|...++...    -+++++||+||+--+..+
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItL----mkrIfLIDcPGvVyps~d  368 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITL----MKRIFLIDCPGVVYPSSD  368 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHH----HhceeEecCCCccCCCCC
Confidence            34566899999999999999999998887654432 4455666555533    357899999999866543

>cd00066 G-alpha G protein alpha subunit

Probab=98.26  E-value=1.5e-05  Score=64.79  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--c
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKK--I  136 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~--~  136 (230)
                      ++..+.++|++|....           +.....++.++++++||++.++-        ........+..+...+..+  .
T Consensus       159 ~~~~~~~~DvgGq~~~-----------R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~  227 (317)
T cd00066         159 KNLKFRMFDVGGQRSE-----------RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA  227 (317)
T ss_pred             cceEEEEECCCCCccc-----------chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence            4567889999996431           13333566789999999998631        1122244445555544432  2


Q ss_pred             cceEEEEEeCCCCCC
Q 026970          137 FDYMIVVFTGGDELE  151 (230)
Q Consensus       137 ~~~~ivv~tk~D~~~  151 (230)
                      ..|+++++||.|.+.
T Consensus       228 ~~pill~~NK~D~f~  242 (317)
T cd00066         228 NTSIILFLNKKDLFE  242 (317)
T ss_pred             CCCEEEEccChHHHH
Confidence            459999999999875

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00959 ffh signal recognition particle protein

Probab=98.25  E-value=4.8e-06  Score=69.94  Aligned_cols=71  Identities=21%  Similarity=0.251  Sum_probs=42.4

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.|+||||....   +.....++.......  .++.+++|+|+..  ........+.+.+.++     ..-+|+||.
T Consensus       182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~~~--~p~e~lLVvda~t--gq~~~~~a~~f~~~v~-----i~giIlTKl  249 (428)
T TIGR00959       182 GFDVVIVDTAGRLQI---DEELMEELAAIKEIL--NPDEILLVVDAMT--GQDAVNTAKTFNERLG-----LTGVVLTKL  249 (428)
T ss_pred             CCCEEEEeCCCcccc---CHHHHHHHHHHHHhh--CCceEEEEEeccc--hHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence            356899999997642   233444444443322  4678999999862  2333334344443332     466889999


Q ss_pred             CCC
Q 026970          148 DEL  150 (230)
Q Consensus       148 D~~  150 (230)
                      |..
T Consensus       250 D~~  252 (428)
T TIGR00959       250 DGD  252 (428)
T ss_pred             cCc
Confidence            954

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.24  E-value=3.7e-05  Score=57.05  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +...++|+|++|+|||||++.|+|...
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            446999999999999999999999753

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.23  E-value=5.2e-05  Score=54.41  Aligned_cols=26  Identities=38%  Similarity=0.457  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +.-.++++|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34688999999999999999999975

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=4.9e-06  Score=58.10  Aligned_cols=115  Identities=17%  Similarity=0.093  Sum_probs=69.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|--|+||+|++-.+--.++.     ..-.|.......+.+ .+-++.++|.-|...           |+-..
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevv-----ttkPtigfnve~v~y-KNLk~~vwdLggqtS-----------irPyW   79 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVV-----TTKPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRPYW   79 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccc-----ccCCCCCcCcccccc-ccccceeeEccCccc-----------ccHHH
Confidence            4579999999999999977554322211     111122223333333 567889999887543           22344


Q ss_pred             HhhcCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++...+++|||+|..++  ++.....+..++.+--  -....++++.||.|...
T Consensus        80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~e--Lq~a~llv~anKqD~~~  133 (182)
T KOG0072|consen   80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEE--LQHAKLLVFANKQDYSG  133 (182)
T ss_pred             HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHh--hcCceEEEEeccccchh
Confidence            4567788999999998643  4433444444444321  11135778899999764

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.19  E-value=8.1e-06  Score=58.82  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      +|+++|++|+||||++..+..
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999988854

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.17  E-value=6e-05  Score=55.79  Aligned_cols=27  Identities=30%  Similarity=0.331  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++++|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.17  E-value=7e-06  Score=60.79  Aligned_cols=73  Identities=21%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.++||||....   .......+......  ..++.+++|+++...  .........+.+..+     ...+|+||.
T Consensus        82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~  149 (173)
T cd03115          82 NFDVVIVDTAGRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL  149 (173)
T ss_pred             CCCEEEEECcccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence            456899999997532   12233333333221  246899999998522  222333333333333     366888999


Q ss_pred             CCCCC
Q 026970          148 DELED  152 (230)
Q Consensus       148 D~~~~  152 (230)
                      |....
T Consensus       150 D~~~~  154 (173)
T cd03115         150 DGDAR  154 (173)
T ss_pred             cCCCC
Confidence            98754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.16  E-value=5.5e-05  Score=56.30  Aligned_cols=26  Identities=35%  Similarity=0.487  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00275 G_alpha G protein alpha subunit

Probab=98.15  E-value=3.2e-05  Score=63.46  Aligned_cols=74  Identities=12%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--c
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKK--I  136 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~--~  136 (230)
                      ++..+.++|..|....           ++....++.++++++||+|.++-        ........+..+...+..+  .
T Consensus       182 ~~~~~~~~DvgGqr~~-----------R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~  250 (342)
T smart00275      182 KKLFFRMFDVGGQRSE-----------RKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA  250 (342)
T ss_pred             CCeEEEEEecCCchhh-----------hhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence            4567889999885321           13333567789999999998731        1122344555555555433  3


Q ss_pred             cceEEEEEeCCCCCC
Q 026970          137 FDYMIVVFTGGDELE  151 (230)
Q Consensus       137 ~~~~ivv~tk~D~~~  151 (230)
                      ..|+++++||.|.+.
T Consensus       251 ~~piil~~NK~D~~~  265 (342)
T smart00275      251 NTSIILFLNKIDLFE  265 (342)
T ss_pred             CCcEEEEEecHHhHH
Confidence            359999999999874

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK01889 GTPase RsgA; Reviewed

Probab=98.08  E-value=5.2e-06  Score=68.48  Aligned_cols=60  Identities=33%  Similarity=0.457  Sum_probs=37.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      ..+++++|.+|+|||||+|.|+|......+.-      ....|.......+.  .  ...++||||+..+
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~--~--~~~l~DtpG~~~~  260 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP--S--GGLLIDTPGMREL  260 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec--C--CCeecCCCchhhh
Confidence            36899999999999999999998754332210      11122222222221  2  2368899998653

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.07  E-value=4.5e-06  Score=67.83  Aligned_cols=66  Identities=24%  Similarity=0.340  Sum_probs=47.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE   87 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~   87 (230)
                      ....+++++|-+++||||+||+|........+. .+++|..-+...    -+..+.|+|.||+.-...+..
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV~----Ldk~i~llDsPgiv~~~~~~~  315 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEVK----LDKKIRLLDSPGIVPPSIDEK  315 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhee----ccCCceeccCCceeecCCCcc
Confidence            345899999999999999999999887655543 345555443332    356788999999986554433

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.06  E-value=5.9e-05  Score=55.31  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.05  E-value=0.00011  Score=55.41  Aligned_cols=26  Identities=35%  Similarity=0.566  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +.-.++|+|++|+|||||++.|+|..
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34689999999999999999999975

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.04  E-value=0.00028  Score=51.88  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++++|++|+|||||++.|+|...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999999754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.04  E-value=7.6e-05  Score=56.76  Aligned_cols=19  Identities=37%  Similarity=0.604  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l   39 (230)
                      -.+++|+||+||||..+.+
T Consensus         4 gqvVIGPPgSGKsTYc~g~   22 (290)
T KOG1533|consen    4 GQVVIGPPGSGKSTYCNGM   22 (290)
T ss_pred             ceEEEcCCCCCccchhhhH
Confidence            3578999999999997764

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.97  E-value=0.0003  Score=51.86  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .+.-++|.||+|+||||+++.|+...
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            34788999999999999999998776

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.96  E-value=6.4e-05  Score=55.64  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ..-.++++|++|+|||||++.|+|...
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            346899999999999999999999753

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=5e-05  Score=64.90  Aligned_cols=37  Identities=38%  Similarity=0.411  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ...+.+++-+.  ..+++++|++|+|||||++.|+|...
T Consensus       336 ~l~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~  372 (559)
T COG4988         336 ALSDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLA  372 (559)
T ss_pred             ccCCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCC
Confidence            33444444444  47999999999999999999999865

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=2.1e-05  Score=63.89  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.|+||.|-..   ....+.+++..+....  .+|.+|+|+|++  ....-....+.+++..+     -.-+++||.
T Consensus       183 ~fdvIIvDTSGRh~---qe~sLfeEM~~v~~ai--~Pd~vi~VmDas--iGQaae~Qa~aFk~~vd-----vg~vIlTKl  250 (483)
T KOG0780|consen  183 NFDVIIVDTSGRHK---QEASLFEEMKQVSKAI--KPDEIIFVMDAS--IGQAAEAQARAFKETVD-----VGAVILTKL  250 (483)
T ss_pred             CCcEEEEeCCCchh---hhHHHHHHHHHHHhhc--CCCeEEEEEecc--ccHhHHHHHHHHHHhhc-----cceEEEEec
Confidence            45799999999763   2344666666664433  579999999996  33334444444555433     344666666


Q ss_pred             CCC
Q 026970          148 DEL  150 (230)
Q Consensus       148 D~~  150 (230)
                      |-.
T Consensus       251 DGh  253 (483)
T KOG0780|consen  251 DGH  253 (483)
T ss_pred             ccC
Confidence            654

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.95  E-value=9.5e-06  Score=60.99  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=29.8

Q ss_pred             CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      ..+.++..+.-..+  -.++++|++|+|||||+++|-+...+.
T Consensus        15 ~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~   55 (240)
T COG1126          15 KEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPD   55 (240)
T ss_pred             eEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCC
Confidence            33444554544433  689999999999999999998876533

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.93  E-value=8.3e-06  Score=62.67  Aligned_cols=40  Identities=28%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccc
Q 026970            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (230)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~   47 (230)
                      +-+++++.-..+  -.|.++|++|+|||||+|.+.|-..+..
T Consensus        18 vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~   57 (248)
T COG1116          18 VLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTS   57 (248)
T ss_pred             EeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            445555554444  5899999999999999999999875443

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.93  E-value=2.8e-05  Score=58.12  Aligned_cols=88  Identities=19%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHH---HHHHHHHHHhcccccceEEEEEeC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE---AALHSLQTLFGKKIFDYMIVVFTG  146 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~---~~l~~l~~~~~~~~~~~~ivv~tk  146 (230)
                      .+.++|+||..+-- +.--+..++.+.+....-++ +++|+++.. -+....+   -.+..+.....  ...|.|-|++|
T Consensus        99 dylifDcPGQIELy-tH~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~--lE~P~INvlsK  173 (273)
T KOG1534|consen   99 DYLIFDCPGQIELY-THLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMIS--LEVPHINVLSK  173 (273)
T ss_pred             CEEEEeCCCeeEEe-ecChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHHH--hcCcchhhhhH
Confidence            58899999987522 22234556666655522223 456666653 2222221   12222222211  23488999999


Q ss_pred             CCCCCCC-hhhHHHHhc
Q 026970          147 GDELEDN-DETLEDYLG  162 (230)
Q Consensus       147 ~D~~~~~-~~~~~~~l~  162 (230)
                      +|++++. ...++.|+.
T Consensus       174 MDLlk~~~k~~l~~Fl~  190 (273)
T KOG1534|consen  174 MDLLKDKNKKELERFLN  190 (273)
T ss_pred             HHHhhhhhHHHHHHhcC
Confidence            9999742 255666665

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.91  E-value=6.9e-05  Score=52.46  Aligned_cols=21  Identities=24%  Similarity=0.494  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026970           22 VVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~   42 (230)
                      |++.|++|+|||++++.++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999854

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.90  E-value=7.9e-05  Score=55.05  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++++|++|+|||||++.|+|...
T Consensus        28 G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          28 GEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            46899999999999999999999854

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.89  E-value=0.00031  Score=51.08  Aligned_cols=25  Identities=40%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ...++|+|++|+|||||++.|.|..
T Consensus        25 g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          25 GEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3689999999999999999999874

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.88  E-value=4.8e-05  Score=65.72  Aligned_cols=29  Identities=24%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      .+-+|+++|++|+|||||++.|+|...+.
T Consensus       347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~  375 (530)
T COG0488         347 RGDRIAIVGPNGAGKSTLLKLLAGELGPL  375 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence            44699999999999999999998876533

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=97.88  E-value=0.00011  Score=58.07  Aligned_cols=66  Identities=29%  Similarity=0.277  Sum_probs=45.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCccceeeeeEEEEe--eCCeEEEEEeCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~   82 (230)
                      .+.-.|.++|+..+|||.|+|.|++.. .|..+....+.|..........  ..+..+.++||.|+.+.
T Consensus        19 ~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~   87 (260)
T PF02263_consen   19 QPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV   87 (260)
T ss_dssp             SBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred             CCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence            445688999999999999999999753 4445554555566544433221  23467999999999883

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.86  E-value=1.3e-05  Score=62.56  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .+-++..+.-+.  +..++++|++|+|||||+++|.|.-.
T Consensus        16 ~il~~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          16 PILDDLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             eEEecceEEecC--CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            344444444444  47899999999999999999998644

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.86  E-value=0.00037  Score=52.52  Aligned_cols=26  Identities=27%  Similarity=0.509  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +...++|+|++|+|||||++.|+|..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34689999999999999999999863

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=6.2e-05  Score=57.48  Aligned_cols=124  Identities=18%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .++|+++|...+||||+-+.......+... -.-..|.......+. ..-..+.+||.||..++-.+..+        ..
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D--------~e   96 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFD--------YE   96 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhh-hhhcceEEeecCCccccCCCccC--------HH
Confidence            367999999999999987766544321110 000001111111111 01236789999998754322211        11


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ..+.++-+++||+|+.+..-.....+...+.+.+.-+...++-+.+.|.|.+.+
T Consensus        97 ~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen   97 MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence            334566799999998633332223333334444444445567788999998864

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.83  E-value=0.00036  Score=53.50  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHh
Q 026970            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      .+++++.+...  ...+++|.|++|+|||||++.+.
T Consensus        17 ~vpnd~~l~~~--~~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          17 FVPNDTEIGGG--GPSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             eEcceEEecCC--CceEEEEECCCCCChHHHHHHHH
Confidence            34555555332  23789999999999999999986

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.83  E-value=0.00029  Score=59.19  Aligned_cols=40  Identities=25%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970            5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      .++++..+.-..+  -.=+|+|++|+|||||++.|.|...++
T Consensus        18 ~And~V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~P~   57 (501)
T COG3845          18 VANDDVSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQPD   57 (501)
T ss_pred             EecCceeeeecCC--cEEEEeccCCCCHHHHHHHHhCcccCC
Confidence            3455555544443  466899999999999999999986533

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.82  E-value=2e-05  Score=57.79  Aligned_cols=28  Identities=32%  Similarity=0.385  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      .-+++++|++|+|||||+|.+.|-..+.
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~   52 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGFETPA   52 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhccCCC
Confidence            3689999999999999999999876543

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.81  E-value=0.00012  Score=57.88  Aligned_cols=25  Identities=20%  Similarity=0.318  Sum_probs=21.6

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      .++..+|++.|.||+|||||+..|.
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~   72 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALG   72 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHH
Confidence            3455799999999999999998874

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.80  E-value=0.0003  Score=57.38  Aligned_cols=131  Identities=16%  Similarity=0.182  Sum_probs=76.0

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------------CCCCccceeeeeEEEEee----------------
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR------------ASSSGVTSTCEMQRTVLK----------------   66 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------------~~~~~~t~~~~~~~~~~~----------------   66 (230)
                      ..+....|+..|+-.+|||||.-+|+-...-+..            .-..+.+....+.-+-+.                
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            3455689999999999999999887533221110            001122222222211111                


Q ss_pred             ------CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE
Q 026970           67 ------DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM  140 (230)
Q Consensus        67 ------~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~  140 (230)
                            .++-+.|+||-|+.      .++...++..+   -..+|-.++++-+++..+.-.++-+-...-.     .-|+
T Consensus       193 ~~vv~~aDklVsfVDtvGHE------pwLrTtirGL~---gqk~dYglLvVaAddG~~~~tkEHLgi~~a~-----~lPv  258 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHE------PWLRTTIRGLL---GQKVDYGLLVVAADDGVTKMTKEHLGIALAM-----ELPV  258 (527)
T ss_pred             hHhhhhcccEEEEEecCCcc------HHHHHHHHHHh---ccccceEEEEEEccCCcchhhhHhhhhhhhh-----cCCE
Confidence                  12357889999874      22222233322   1356889999999878776665555443332     2389


Q ss_pred             EEEEeCCCCCCCChhhHHHHh
Q 026970          141 IVVFTGGDELEDNDETLEDYL  161 (230)
Q Consensus       141 ivv~tk~D~~~~~~~~~~~~l  161 (230)
                      ++++||+|+.+  ++.+....
T Consensus       259 iVvvTK~D~~~--ddr~~~v~  277 (527)
T COG5258         259 IVVVTKIDMVP--DDRFQGVV  277 (527)
T ss_pred             EEEEEecccCc--HHHHHHHH
Confidence            99999999997  44444333

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.80  E-value=0.00041  Score=52.72  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+++|+|++|+|||||++.+.+.
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHH
Confidence            68999999999999999999843

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.78  E-value=2.9e-05  Score=58.31  Aligned_cols=41  Identities=22%  Similarity=0.325  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970            3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      |+.+.++..+...++  -.++++|++|+|||||++.|+|.-.+
T Consensus        13 Gr~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p   53 (259)
T COG4559          13 GRRLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSP   53 (259)
T ss_pred             cceeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCC
Confidence            344555555544443  68899999999999999999998653

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.78  E-value=0.00047  Score=56.16  Aligned_cols=75  Identities=17%  Similarity=0.226  Sum_probs=47.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC--C------CCHHHHHHHHHHHHHhccc--c
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--R------FSQEEEAALHSLQTLFGKK--I  136 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~--~------~~~~~~~~l~~l~~~~~~~--~  136 (230)
                      .+..+.++|.+|.-.          +- +-...++.++++||||++.++  .      .+....+.++.+...+..+  .
T Consensus       193 k~~~f~~~DvGGQRs----------eR-rKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~  261 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRS----------ER-KKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA  261 (354)
T ss_pred             CCCceEEEeCCCcHH----------Hh-hhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence            667899999999432          11 222248899999999998751  1      1111234444555544433  2


Q ss_pred             cceEEEEEeCCCCCCC
Q 026970          137 FDYMIVVFTGGDELED  152 (230)
Q Consensus       137 ~~~~ivv~tk~D~~~~  152 (230)
                      ..++|+.+||.|++.+
T Consensus       262 ~tsiiLFLNK~DLFeE  277 (354)
T KOG0082|consen  262 NTSIILFLNKKDLFEE  277 (354)
T ss_pred             cCcEEEEeecHHHHHH
Confidence            3479999999999863

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.77  E-value=2.3e-05  Score=55.50  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCEEEEEccCCCccccceeeeccccc
Confidence            35899999999999999999999864

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.77  E-value=2.8e-05  Score=46.77  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      ...+|.|++|+||||++.++.
T Consensus        24 ~~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999998875

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.77  E-value=0.00053  Score=46.41  Aligned_cols=103  Identities=17%  Similarity=0.126  Sum_probs=53.2

Q ss_pred             EEEE-cCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           22 VVLV-GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        22 i~li-G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      |+++ +..|+||||+.-.|...-....+  .     ...........+..+.++|||+....         ....    .
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~--~-----~~~l~d~d~~~~~D~IIiDtpp~~~~---------~~~~----~   61 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAG--R-----RVLLVDLDLQFGDDYVVVDLGRSLDE---------VSLA----A   61 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCC--C-----cEEEEECCCCCCCCEEEEeCCCCcCH---------HHHH----H
Confidence            3444 57999999988776543211000  0     00111111112237899999986641         1112    2


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTG  146 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk  146 (230)
                      ...+|.++++++.+ ..+... ...++.+.+. +.....++.+|+|+
T Consensus        62 l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          62 LDQADRVFLVTQQD-LPSIRNAKRLLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             HHHcCeEEEEecCC-hHHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence            23458899998887 333333 4555555543 32212357777774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=4.4e-05  Score=61.83  Aligned_cols=132  Identities=19%  Similarity=0.151  Sum_probs=76.5

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC------------CCcccee--eeeEEE-------Ee--------
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------------SSGVTST--CEMQRT-------VL--------   65 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------------~~~~t~~--~~~~~~-------~~--------   65 (230)
                      ...-..+++++|.-.+|||||+--|+....-+..-.            ..+.|..  .....+       .+        
T Consensus       163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE  242 (591)
T KOG1143|consen  163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE  242 (591)
T ss_pred             ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence            344558999999999999999988875543111000            0011110  000000       00        


Q ss_pred             ---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 026970           66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (230)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv  142 (230)
                         ....-++|+|.+|........       ...+..  --+|..++|++++..++...++-+..+..+     ..|+++
T Consensus       243 i~e~SSKlvTfiDLAGh~kY~~TT-------i~gLtg--Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL-----~iPfFv  308 (591)
T KOG1143|consen  243 IVEKSSKLVTFIDLAGHAKYQKTT-------IHGLTG--YTPHFACLVVSADRGITWTTREHLGLIAAL-----NIPFFV  308 (591)
T ss_pred             HHhhhcceEEEeecccchhhheee-------eeeccc--CCCceEEEEEEcCCCCccccHHHHHHHHHh-----CCCeEE
Confidence               012357889988865321110       011111  245888999999878887777777766664     348999


Q ss_pred             EEeCCCCCCCChhhHHHHhc
Q 026970          143 VFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus       143 v~tk~D~~~~~~~~~~~~l~  162 (230)
                      ++||+|+..  ...++..++
T Consensus       309 lvtK~Dl~~--~~~~~~tv~  326 (591)
T KOG1143|consen  309 LVTKMDLVD--RQGLKKTVK  326 (591)
T ss_pred             EEEeecccc--chhHHHHHH
Confidence            999999987  444444333

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.74  E-value=2.1e-05  Score=69.41  Aligned_cols=130  Identities=17%  Similarity=0.130  Sum_probs=82.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceee---------------------------------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC---------------------------------------   58 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~---------------------------------------   58 (230)
                      .-+.|+++|..++||||.++++.|..+.+-+..  .+|..+                                       
T Consensus        28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~  105 (657)
T KOG0446|consen   28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS  105 (657)
T ss_pred             cCCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence            447999999999999999999999765221110  001100                                       


Q ss_pred             ----------------eeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH
Q 026970           59 ----------------EMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE  120 (230)
Q Consensus        59 ----------------~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~  120 (230)
                                      ....+...+-..++++|.||+..-...  .+.+..++...+..+....+.+++.+.+. ..+..
T Consensus       106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d~a  184 (657)
T KOG0446|consen  106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSDIA  184 (657)
T ss_pred             hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhhhh
Confidence                            000011112236899999999864332  24567777777777888888888877654 23333


Q ss_pred             HHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       121 ~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ....++..++.  .+....++.|+||.|.++.
T Consensus       185 ts~alkiarev--Dp~g~RTigvitK~Dlmdk  214 (657)
T KOG0446|consen  185 TSPALVVAREV--DPGGSRTLEVITKFDFMDK  214 (657)
T ss_pred             cCHHHHHHHhh--CCCccchhHHhhhHHhhhc
Confidence            34555655554  2234479999999998864

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.73  E-value=3.6e-05  Score=58.89  Aligned_cols=26  Identities=35%  Similarity=0.379  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      -.|+++|++|||||||+|.|.+-+.+
T Consensus        32 e~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            58999999999999999999887654

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.73  E-value=3.3e-05  Score=58.09  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|+|||||++.|+|...
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6899999999999999999999753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.71  E-value=5.6e-06  Score=63.25  Aligned_cols=26  Identities=35%  Similarity=0.382  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.+++|||+|+|||||+|.|+|.-.
T Consensus        30 Gei~~LIGPNGAGKTTlfNlitG~~~   55 (250)
T COG0411          30 GEIVGLIGPNGAGKTTLFNLITGFYK   55 (250)
T ss_pred             CeEEEEECCCCCCceeeeeeeccccc
Confidence            36899999999999999999998754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.71  E-value=4.2e-05  Score=58.47  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999999753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.69  E-value=4.5e-05  Score=58.47  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            36899999999999999999999754

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.68  E-value=4.8e-05  Score=57.21  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=27.2

Q ss_pred             CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+..+.++.-+.+  ...+++||+|+|||||+++|-.
T Consensus        20 ~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          20 KHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             hhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHh
Confidence            34455666665554  6889999999999999988743

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.68  E-value=4.7e-05  Score=59.24  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.67  E-value=5e-05  Score=58.37  Aligned_cols=27  Identities=33%  Similarity=0.390  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            346899999999999999999999854

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=4e-05  Score=60.45  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ....+|+-+|+-..||||+.+++.|..
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~   62 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVH   62 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccce
Confidence            345899999999999999999998864

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.66  E-value=4.5e-05  Score=59.28  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=27.0

Q ss_pred             CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +-++.++.-+.+  -.++++|++|+|||||+++++|.-
T Consensus        19 vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll   54 (254)
T COG1121          19 VLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLL   54 (254)
T ss_pred             eeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence            334444443333  688999999999999999999953

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.66  E-value=5.2e-05  Score=57.70  Aligned_cols=27  Identities=22%  Similarity=0.447  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999999753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.65  E-value=0.00028  Score=48.71  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      +|+++|..|+|||+|+..+...
T Consensus         2 kvv~~G~~gvGKt~l~~~~~~~   23 (124)
T smart00010        2 KVVGIGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             EEEEECCCChhHHHHHHHHhcC
Confidence            6899999999999999998543

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.65  E-value=0.0021  Score=48.78  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      .+++|.|++|+|||||++.|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            579999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.65  E-value=5.6e-05  Score=57.93  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        28 G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        28 GEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.65  E-value=5.5e-05  Score=58.07  Aligned_cols=27  Identities=41%  Similarity=0.503  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999753

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.65  E-value=5.7e-05  Score=57.87  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          26 GEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.64  E-value=5.8e-05  Score=58.10  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36899999999999999999999743

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.64  E-value=4.9e-05  Score=56.37  Aligned_cols=24  Identities=38%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.-+++|+|++|+|||||++.+++
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            346999999999999999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=6.6e-05  Score=62.60  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce--EEEEE
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY--MIVVF  144 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~--~ivv~  144 (230)
                      ++..++++||+|-..   .+.-+...+.+.+..  ..+|.|++|=.+-  ...+....+..+.+.++....++  =-+++
T Consensus       465 ~gfDVvLiDTAGR~~---~~~~lm~~l~k~~~~--~~pd~i~~vgeal--vg~dsv~q~~~fn~al~~~~~~r~id~~~l  537 (587)
T KOG0781|consen  465 QGFDVVLIDTAGRMH---NNAPLMTSLAKLIKV--NKPDLILFVGEAL--VGNDSVDQLKKFNRALADHSTPRLIDGILL  537 (587)
T ss_pred             cCCCEEEEecccccc---CChhHHHHHHHHHhc--CCCceEEEehhhh--hCcHHHHHHHHHHHHHhcCCCccccceEEE
Confidence            456799999999753   334445555555543  4679999997653  22223344444555555433222  34889


Q ss_pred             eCCCCCCC
Q 026970          145 TGGDELED  152 (230)
Q Consensus       145 tk~D~~~~  152 (230)
                      ||+|...+
T Consensus       538 tk~dtv~d  545 (587)
T KOG0781|consen  538 TKFDTVDD  545 (587)
T ss_pred             Eeccchhh
Confidence            99998863

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.63  E-value=5.7e-05  Score=58.18  Aligned_cols=26  Identities=38%  Similarity=0.420  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36899999999999999999999753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00096  Score=55.62  Aligned_cols=25  Identities=28%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -+|+++|++|+|||||+..|+|.-.
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~  638 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLD  638 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCC
Confidence            5899999999999999999999754

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.63  E-value=0.00084  Score=47.80  Aligned_cols=105  Identities=17%  Similarity=0.113  Sum_probs=54.6

Q ss_pred             EEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcC
Q 026970           23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD  102 (230)
Q Consensus        23 ~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (230)
                      +.-|..|+||||+--.+...-. ..+..  ..-.+.......  -...+.++|||+..+     .    ....    ...
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~--~~~vd~D~~~~~--~~yd~VIiD~p~~~~-----~----~~~~----~l~   65 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKR--VLLLDADLGLAN--LDYDYIIIDTGAGIS-----D----NVLD----FFL   65 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCc--EEEEECCCCCCC--CCCCEEEEECCCCCC-----H----HHHH----HHH
Confidence            3447899999999665542211 00000  000000000000  015789999998543     1    1112    233


Q ss_pred             CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970          103 GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (230)
Q Consensus       103 ~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~  149 (230)
                      .+|.++++++.+ ..+... ...++.+.+..+   ..++.+|+|+.+.
T Consensus        66 ~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~---~~~~~lVvN~~~~  109 (139)
T cd02038          66 AADEVIVVTTPE-PTSITDAYALIKKLAKQLR---VLNFRVVVNRAES  109 (139)
T ss_pred             hCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence            458999999886 333222 445555554322   2368899999864

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.63  E-value=6.4e-05  Score=57.90  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999854

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.63  E-value=6.5e-05  Score=57.48  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++|+|++|+|||||++.|+|...
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999753

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.62  E-value=6.3e-05  Score=57.27  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36899999999999999999999753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.62  E-value=6e-05  Score=57.64  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .++|+|++|+|||||++.|+|...
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            899999999999999999999753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.61  E-value=6.8e-05  Score=57.31  Aligned_cols=27  Identities=33%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.61  E-value=6.9e-05  Score=56.61  Aligned_cols=27  Identities=26%  Similarity=0.250  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999999754

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.61  E-value=6.9e-05  Score=57.40  Aligned_cols=27  Identities=33%  Similarity=0.433  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            346899999999999999999999754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.61  E-value=6.7e-05  Score=57.47  Aligned_cols=27  Identities=33%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999999753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.60  E-value=7.2e-05  Score=58.06  Aligned_cols=26  Identities=35%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          26 GEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36899999999999999999999754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.60  E-value=6.9e-05  Score=60.25  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|||||||++.|+|...
T Consensus        32 ei~gllG~NGAGKTTllk~l~gl~~   56 (293)
T COG1131          32 EIFGLLGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcC
Confidence            6899999999999999999999854

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.60  E-value=6.9e-05  Score=60.81  Aligned_cols=27  Identities=37%  Similarity=0.402  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      -.++|+|++|+|||||++.|+|-..+.
T Consensus        30 ef~vllGPSGcGKSTlLr~IAGLe~~~   56 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIAGLEEPT   56 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            578999999999999999999986533

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.59  E-value=5e-05  Score=61.41  Aligned_cols=26  Identities=19%  Similarity=0.219  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +-.++|+|++|+|||||++.|+|...
T Consensus        19 Ge~~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        19 GEVFGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36899999999999999999999754

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.59  E-value=7.5e-05  Score=58.01  Aligned_cols=27  Identities=30%  Similarity=0.398  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346999999999999999999999854

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.59  E-value=7.8e-05  Score=57.45  Aligned_cols=27  Identities=33%  Similarity=0.537  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            347899999999999999999998754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13695 putative NTPase; Provisional

Probab=97.59  E-value=0.00076  Score=49.92  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      +|+|.|.+|+|||||+..+.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999987643

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.59  E-value=7.7e-05  Score=57.42  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +-.++|+|++|+|||||++.|+|...
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          28 GEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36899999999999999999999753

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.59  E-value=7.6e-05  Score=58.86  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         27 GELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999754

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.59  E-value=8.2e-05  Score=56.33  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999753

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.59  E-value=7.7e-05  Score=57.71  Aligned_cols=27  Identities=41%  Similarity=0.567  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ..-.++|+|++|+|||||++.|+|...
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346999999999999999999999753

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.59  E-value=8e-05  Score=56.49  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346999999999999999999999754

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.58  E-value=6.8e-05  Score=56.93  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            347999999999999999999999754

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.58  E-value=8.1e-05  Score=57.00  Aligned_cols=26  Identities=38%  Similarity=0.495  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          26 GEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999753

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.58  E-value=0.003  Score=46.55  Aligned_cols=25  Identities=24%  Similarity=0.305  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..-.|.+||.+|+|||||+++|--.
T Consensus        31 ~GdVisIIGsSGSGKSTfLRCiN~L   55 (256)
T COG4598          31 AGDVISIIGSSGSGKSTFLRCINFL   55 (256)
T ss_pred             CCCEEEEecCCCCchhHHHHHHHhh
Confidence            3468999999999999999998543

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.58  E-value=8.4e-05  Score=56.70  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++|+|++|+|||||++.|+|...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999754

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.58  E-value=7.9e-05  Score=58.03  Aligned_cols=27  Identities=26%  Similarity=0.238  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++|+|++|+|||||++.|+|...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            346899999999999999999999754

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.58  E-value=8.4e-05  Score=55.48  Aligned_cols=26  Identities=27%  Similarity=0.537  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++++|++|+|||||++.|+|...
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          26 GEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.58  E-value=7.9e-05  Score=57.14  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-+|+++|++|+|||||++.|.|.-.
T Consensus        52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~   78 (249)
T COG1134          52 KGERVGIIGHNGAGKSTLLKLIAGIYK   78 (249)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCccC
Confidence            446999999999999999999999854

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.57  E-value=7.9e-05  Score=58.25  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        28 GEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            36899999999999999999998753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.57  E-value=6.4e-05  Score=57.32  Aligned_cols=36  Identities=28%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..++.++.-+..  -.|+++|++|+|||||+++|.|..
T Consensus        19 aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~   54 (258)
T COG3638          19 ALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLV   54 (258)
T ss_pred             eeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhccc
Confidence            334444444443  689999999999999999998853

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.57  E-value=6.5e-05  Score=58.08  Aligned_cols=26  Identities=19%  Similarity=0.220  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         33 GEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccC
Confidence            36899999999999999999999753

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.57  E-value=7.4e-05  Score=59.46  Aligned_cols=26  Identities=31%  Similarity=0.281  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +-.++|+|++|+|||||++.|+|...
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         27 SPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            36899999999999999999999754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.57  E-value=8.6e-05  Score=58.22  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ..-.++|+|++|+|||||++.|+|...
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            456899999999999999999999754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.57  E-value=8.4e-05  Score=58.01  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +-.++|+|++|+|||||++.|+|...
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          28 GELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36899999999999999999999754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.57  E-value=0.00069  Score=55.11  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+..+|.|--|||||||+|.++..
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhc
Confidence            468889999999999999999854

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.56  E-value=9.1e-05  Score=56.33  Aligned_cols=27  Identities=33%  Similarity=0.525  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ..-.+.++|++|+|||||+++|+|...
T Consensus        28 ~Geiv~llG~NGaGKTTlLkti~Gl~~   54 (237)
T COG0410          28 RGEIVALLGRNGAGKTTLLKTIMGLVR   54 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999754

>PRK10908 cell division protein FtsE; Provisional

Probab=97.56  E-value=8.7e-05  Score=57.22  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +...++|+|++|+|||||++.|+|...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999754

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.56  E-value=8.5e-05  Score=57.74  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         35 GEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36899999999999999999999753

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.56  E-value=9e-05  Score=56.53  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            346899999999999999999999753

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.56  E-value=9e-05  Score=57.89  Aligned_cols=27  Identities=30%  Similarity=0.391  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999754

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.56  E-value=8.7e-05  Score=57.76  Aligned_cols=27  Identities=30%  Similarity=0.265  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            346899999999999999999999753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.55  E-value=9.7e-05  Score=56.22  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            336899999999999999999999854

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.55  E-value=9.1e-05  Score=57.36  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++|+|++|+|||||++.|+|...
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            346999999999999999999999853

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.55  E-value=0.0001  Score=54.93  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999753

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.55  E-value=7.5e-05  Score=51.66  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      +|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

...

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.55  E-value=9.6e-05  Score=57.30  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346999999999999999999999754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.55  E-value=0.0017  Score=46.73  Aligned_cols=117  Identities=12%  Similarity=0.183  Sum_probs=59.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc---cccccCCCCccceeeeeEEEEeeCC--eEEEEEeCC----------CCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR---AFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTP----------GLFDFS   83 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtP----------G~~~~~   83 (230)
                      ..+|++.|+||+||||++..+...-   .+..+   +..|.....      ++  .-+.++|..          |+..+.
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg---Gf~t~EVR~------gGkR~GF~Ivdl~tg~~~~la~~~~~~~r   75 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG---GFITPEVRE------GGKRIGFKIVDLATGEEGILARVGFSRPR   75 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCceee---eEEeeeeec------CCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence            4799999999999999988775321   11110   001111100      11  123344433          112111


Q ss_pred             C-----CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           84 A-----GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        84 ~-----~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      .     ..+...+-...++...+..+|+++ +-.+. ++..-...+.+.+.+.+...  +|.+.++-+-+
T Consensus        76 vGkY~V~v~~le~i~~~al~rA~~~aDvII-IDEIG-pMElks~~f~~~ve~vl~~~--kpliatlHrrs  141 (179)
T COG1618          76 VGKYGVNVEGLEEIAIPALRRALEEADVII-IDEIG-PMELKSKKFREAVEEVLKSG--KPLIATLHRRS  141 (179)
T ss_pred             cceEEeeHHHHHHHhHHHHHHHhhcCCEEE-Eeccc-chhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence            1     122233344556666666666543 33334 56555667777777776543  35666655443

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.55  E-value=9.5e-05  Score=57.25  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        29 G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          29 GETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            36899999999999999999999864

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.54  E-value=8.2e-05  Score=57.57  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +.-.++|+|++|+|||||++.|+|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34689999999999999999999975

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.54  E-value=9.7e-05  Score=57.32  Aligned_cols=26  Identities=35%  Similarity=0.440  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36899999999999999999999854

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.54  E-value=9.8e-05  Score=56.46  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446899999999999999999999854

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.54  E-value=9.8e-05  Score=56.74  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          31 GEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            36899999999999999999999753

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.54  E-value=0.00091  Score=43.86  Aligned_cols=68  Identities=21%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970           22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  101 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (230)
                      +++.|..|+||||+...+...-.   .. ..      ..  ... +  .+.++|+|+..+.....          .....
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~---~~-g~------~v--~~~-~--d~iivD~~~~~~~~~~~----------~~~~~   56 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALA---KR-GK------RV--LLI-D--DYVLIDTPPGLGLLVLL----------CLLAL   56 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH---HC-CC------eE--EEE-C--CEEEEeCCCCccchhhh----------hhhhh
Confidence            67889999999999988875421   00 00      00  111 1  67899999976532100          11233


Q ss_pred             CCccEEEEEEeCC
Q 026970          102 DGIHAVLVVFSVR  114 (230)
Q Consensus       102 ~~~~~il~v~d~~  114 (230)
                      ..+|.++++++..
T Consensus        57 ~~~~~vi~v~~~~   69 (99)
T cd01983          57 LAADLVIIVTTPE   69 (99)
T ss_pred             hhCCEEEEecCCc
Confidence            4567888888776

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.54  E-value=9.6e-05  Score=57.78  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.54  E-value=0.00012  Score=52.02  Aligned_cols=21  Identities=38%  Similarity=0.556  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026970           22 VVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~   42 (230)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.53  E-value=0.0001  Score=58.14  Aligned_cols=29  Identities=28%  Similarity=0.328  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .+.-.++|+|++|+|||||++.|+|...+
T Consensus        24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p   52 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLKP   52 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            34569999999999999999999998643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.53  E-value=0.00015  Score=53.88  Aligned_cols=24  Identities=38%  Similarity=0.468  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      -.|+++|++|+|||||+|.+.|-.
T Consensus        32 e~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          32 ELVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             CEEEEEcCCCccHHHHHHHHhcCc
Confidence            578899999999999999999874

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.53  E-value=9.8e-05  Score=58.29  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +-.++|+|++|+|||||++.|+|...
T Consensus        38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         38 GQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            46899999999999999999999753

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.53  E-value=0.0001  Score=57.53  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          27 GEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            46899999999999999999998753

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.52  E-value=0.00011  Score=54.60  Aligned_cols=26  Identities=31%  Similarity=0.510  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++++|++|+|||||++.|+|...
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCC
Confidence            36899999999999999999999854

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.52  E-value=0.0001  Score=58.76  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++|+|++|+|||||++.|+|...
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999999754

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.51  E-value=0.00011  Score=57.41  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +-.++|+|++|+|||||++.|+|...
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         29 GAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            36899999999999999999999753

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.51  E-value=0.00011  Score=56.50  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            346899999999999999999999854

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		1e-20
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		5e-16
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		6e-16
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		1e-15
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		2e-15
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		2e-14
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		5e-04
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		6e-04
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		6e-04
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		8e-04

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 15  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
           P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGK 134
           DTPG+FD    +    KEI++CI +   G HA+L          +EE  A   +   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKXFGE 142
Query: 135 KIFDYMIVVF 144
           +   + I++F
Sbjct: 143 RARSFXILIF 152

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 78  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 137 AMGHTIVLF 145

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 119
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 120 AMGHTIVLF 128

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78
           E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
           +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+    
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMG 119
Query: 139 YMIVVF 144
           + IV+F
Sbjct: 120 HTIVLF 125

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 16  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
           TP  F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 78  TPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
              + IV+F
Sbjct: 137 AXGHTIVLF 145

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 20  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
           R ++LVGRTG GKSATGNSILG+R F SR  ++ VT  C    +   D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80  FDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
           F         G +E   C  ++  G HA+L          Q+++ A+  ++ +FG+ +  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLK 139
Query: 139 YMIVVF 144
           +M++VF
Sbjct: 140 WMVIVF 145

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
           +  AG  +V  + ++ I   +    I  +L           E ++  + ++   FGK+I+
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
              ++V                +  +   + LK  +  +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFE 198

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  +N+IDTPGL 
Sbjct: 37  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
           +  AG  +V  + ++ I   +    I  +L           E ++  + ++   FGK+I+
Sbjct: 95  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 150
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
              ++V                +  +     LK  +  +K+R Q+FE
Sbjct: 151 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 197

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
           +  AG  +V  + ++ I   +    I  +L           E ++  + ++   FGK+I+
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
              ++V                +  +     LK  +  +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 198

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  +N+IDTPGL 
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
           +  AG  +V  + ++ I   +    I  +L           E ++  + ++   FGK+I+
Sbjct: 96  E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
              ++V                +  +     LK  +  +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	5e-51
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	1e-49
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-49
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	2e-47
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	3e-44
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  165 bits (420), Expect = 5e-51
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 3/161 (1%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
           +L        TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  
Sbjct: 28  KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFT 85

Query: 71  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130
           +N+IDTPGL +    +    + I   +      +   +    V     + ++  + ++  
Sbjct: 86  INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQVVIAITQ 144

Query: 131 LFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171
            FGK+I+   ++V T       ++ + E +  +     LK 
Sbjct: 145 TFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKT 185

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  161 bits (408), Expect = 1e-49
 Identities = 64/190 (33%), Positives = 106/190 (55%), Gaps = 6/190 (3%)

Query: 14  SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNV 73
            P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 133
           +DTPG+FD    +    KEI++CI +   G HA+L+V  +  R+++EE  A   +  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKRE 193
           ++   +MI++FT  D+L   D  L DYL RE P+ ++       D+   +++ K     +
Sbjct: 142 ERARSFMILIFTRKDDLG--DTNLHDYL-REAPEDIQDLMDIFGDRYCALNN-KATGAEQ 197

Query: 194 ISELKEQMHK 203
            ++  + +  
Sbjct: 198 EAQRAQLLGL 207

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  161 bits (409), Expect = 2e-49
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 5/169 (2%)

Query: 3   GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR 62
              ++    L        T++++G+ G GKS+T NSI+G R        S       + R
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFSQEE 121
           +    G  +N+IDTPGL +    ++     I   +      I  +L V  +   R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 122 EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170
           +    ++   FGK I++  IV  T       +    +++  +     L+
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  156 bits (396), Expect = 2e-47
 Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 13/212 (6%)

Query: 4   SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT 63
           S      +    S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   + 
Sbjct: 7   SHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG 66

Query: 64  VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA 123
                + + +IDTP +F +    E + KE+ +C  ++  G H +L+V  +  R++ +++ 
Sbjct: 67  SW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQ 124

Query: 124 ALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEV 183
           A   ++ +FG+    + IV+FT  ++L     +L DY+     K L K       +    
Sbjct: 125 AAQRVKEIFGEDAMGHTIVLFTHKEDLN--GGSLMDYMHDSDNKALSKLVAACGGRICAF 182

Query: 184 DSLKGYSKREISELKEQMHKSYEDQLKRITEM 215
           +     ++ E S   +Q+    ++ +  I ++
Sbjct: 183 N-----NRAEGSNQDDQV----KELMDCIEDL 205

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 62.4 bits (151), Expect = 1e-11
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 28/211 (13%)

Query: 4   SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQR 62
           SAI D   L    +    V + G TG+GKS+  N++ G    +  A+ +GV     E   
Sbjct: 56  SAISD--ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP 113

Query: 63  TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE 122
               +   V   D PG+   +   +   +++                +    +RF + + 
Sbjct: 114 YKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDI 165

Query: 123 AALHSLQTLFGKKIFDYMIVVFTGGDELEDND----------ETLEDYLGRECPKPLKKG 172
               ++     K+       V T  D    N+          E +   +   C    ++ 
Sbjct: 166 DIAKAISM-MKKEF----YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE- 219

Query: 173 ATKLRDQQFEVDSLKGYSKREISELKEQMHK 203
              + +    + S K     +   L +++  
Sbjct: 220 -NGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 35/237 (14%), Positives = 81/237 (34%), Gaps = 45/237 (18%)

Query: 19  ERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGV----TSTCEMQRTVLKDGQVVNV 73
            + V++ G  G+GK+     +    ++K        +       C    TVL+  Q +  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 74  IDTPGLFDFSAGSEFV------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 127
              P     S  S  +       +  ++ +  +K   + +LV+ +V++  ++   A   S
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLS 265

Query: 128 LQTLF---GKKIFDYMIVVFTGGDELEDN------DETLE---DYLGREC---PKPLKKG 172
            + L     K++ D++    T    L+ +      DE       YL       P+ +   
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 173 --------ATKLRDQQFEVDSLKGYSKREISELKEQMHKSYE----DQLKRITEMCA 217
                   A  +RD    + +   +      +L   +  S       + +++ +  +
Sbjct: 326 NPRRLSIIAESIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.95
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.95
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.91
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.86
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.85
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.81
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.81
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.8
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.79
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.76
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.76
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.75
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.75
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.75
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.74
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.73
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.73
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.72
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.71
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.71
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.71
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.71
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.71
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.71
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.71
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.7
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.7
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.7
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.7
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.7
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.7
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.7
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.7
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.7
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.7
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.7
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.7
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.69
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.69
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.69
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.69
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.69
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.69
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.69
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.69
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.69
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.68
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.68
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.68
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.68
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.68
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.68
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.68
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.68
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.68
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.68
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.68
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.68
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.67
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.67
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.67
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.67
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.67
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.67
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.67
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.67
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.67
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.67
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.67
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.67
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.67
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.67
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.67
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.67
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.67
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.67
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.67
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.66
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.66
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.66
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.66
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.66
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.66
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.66
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.66
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.66
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.66
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.66
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.65
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.65
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.65
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.65
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.65
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.65
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.65
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.65
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.65
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.65
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.65
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.65
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.65
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.65
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.64
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.64
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.64
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.64
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.64
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.64
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.63
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.63
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.63
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.63
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.63
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.63
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.63
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.63
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.63
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.63
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.62
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.62
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.62
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.62
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.62
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.62
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.61
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.61
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.61
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.61
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.61
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.6
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.6
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.6
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.6
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.6
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.59
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.59
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.59
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.59
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.58
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.58
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.58
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.58
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.57
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.57
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.56
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.56
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.56
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.55
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.55
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.55
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.54
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.54
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.54
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.54
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.54
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.54
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.53
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.53
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.53
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.52
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.52
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.52
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.52
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.52
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.26
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.5
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.5
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.5
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.49
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.49
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.48
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.48
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.48
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.48
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.47
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.46
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.45
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.45
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.45
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.42
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.42
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.42
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.4
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.39
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.38
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.38
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.37
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.35
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.29
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.26
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.23
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.23
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.22
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.18
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.16
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.15
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.15
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.12
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.12
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.1
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.09
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.09
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.98
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.97
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.96
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.88
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.85
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.81
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.75
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.74
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.67
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.63
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.61
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.61
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.61
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.6
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.57
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.5
2xxa_A	433	Signal recognition particle protein; protein trans	98.46
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.39
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.36
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.32
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.31
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.31
2og2_A	359	Putative signal recognition particle receptor; nuc	98.26
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.24
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.24
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.19
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.17
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.15
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.11
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.1
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.83
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.83
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.81
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.81
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.79
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.78
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.76
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.75
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.75
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.74
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.74
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.74
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.74
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.73
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.73
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.73
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.73
1g6h_A	257	High-affinity branched-chain amino acid transport	97.72
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.72
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.71
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.71
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.71
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.71
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.71
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.7
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.7
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.69
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.69
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.67
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.67
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.67
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.66
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.65
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.65
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.65
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.64
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.64
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.64
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.61
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.6
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.6
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.58
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.58
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.57
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.55
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.55
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.55
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.53
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.52
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.52
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.52
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.48
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.48
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.48
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.47
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.47
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.46
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.46
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.46
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.44
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.44
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.43
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.43
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.42
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.41
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.41
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.4
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.39
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.39
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.38
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.37
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.35
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.33
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.33
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.32
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.32
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.3
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.29
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.29
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.28
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.28
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.28
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.27
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.27
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.26
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.25
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.23
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.22
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.22
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.2
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.2
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.2
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.2
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.19
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.19
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.18
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.18
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.18
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.17
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.15
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.15
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.14
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.14
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.14
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.09
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.09
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.09
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.09
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.08
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.07
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.06
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.05
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.05
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.04
3end_A	307	Light-independent protochlorophyllide reductase ir	97.04
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.02
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.01
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.0
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.99
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.98
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.98
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.98
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.97
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.96
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.95
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.94
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.93
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.93
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.93
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.93
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.92
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.91
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.91
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.89
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.88
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.88
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.88
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.86
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.86
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.86
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.85
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.83
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.8
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.8
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.79
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.79
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.79
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.78
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.78
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.78
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.77
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.76
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.75
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.75
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.75
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.75
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.74
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.74
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.74
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.73
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.72
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.71
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.7
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.7
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.69
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.69
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.68
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.67
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.66
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.66
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.66
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.66
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.65
1via_A	175	Shikimate kinase; structural genomics, transferase	96.65
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.64
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.64
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.64
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.62
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.62
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.59
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.59
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.58
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.58
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.57
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.54
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.51
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.5
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.5
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.5
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.5
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.49
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.49
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.48
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.47
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.47
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.47
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.46
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.45
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.45
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.45
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.43
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.43
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.42
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.41
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.4
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.4
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.39
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.36
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.35
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.33
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.32
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.31
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.3
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.28
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.28
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.27
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.27
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.26
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.26
3bos_A	242	Putative DNA replication factor; P-loop containing	96.23
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.23
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.22
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.19
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.18
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.17
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.16
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.15
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.14
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.13
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.12
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.09
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.09
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.08
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.06
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.05
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.05
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.04
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.03
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.01
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.0
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.99
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	95.97
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.95
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.92
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.92
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.91
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.83
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.8
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.78
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.75
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.73
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.71
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.7
3co5_A	143	Putative two-component system transcriptional RES	95.68
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.68

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=1.7e-26  Score=179.22  Aligned_cols=184  Identities=36%  Similarity=0.583  Sum_probs=115.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....++|+|+|++|+|||||+|+|+|...+.......++|..+......+ .+..+.||||||+.+...........+..
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            34568999999999999999999999887554433335666666665554 77899999999999887777777888999


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc-----------cc
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG-----------RE  164 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~-----------~~  164 (230)
                      ++..+++++|++|+|+|++ +++..+..++..+.+.++.....|+++|+||+|++.  ...+++++.           ..
T Consensus       105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~--~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG--DTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC--cccHHHHHHhchHHHHHHHHHc
Confidence            9888889999999999998 788888888899988888766679999999999986  334443333           21


Q ss_pred             CCchh------------hhhHHHHHhHHHHHHHcCC--CcHHHHHHHHHHHHH
Q 026970          165 CPKPL------------KKGATKLRDQQFEVDSLKG--YSKREISELKEQMHK  203 (230)
Q Consensus       165 ~~~~l------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  203 (230)
                      ..++.            ......+..+.+++.++++  |+.+.++++++.+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~  234 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQK  234 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC--------------
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence            11111            1223344666677777666  777766666555433

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.91  E-value=7.2e-23  Score=160.63  Aligned_cols=135  Identities=33%  Similarity=0.584  Sum_probs=105.4

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      +.....+|+|+|++|||||||+|+|++...+.......++|.........+ .+..+.||||||+.++..........+.
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            344568999999999999999999999876554433333565555554544 7789999999999987766666666777


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe-CCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t-k~D~~~  151 (230)
                      .++..+++++|++++|+|++ +++..+..+++.+.+.++.....|+++|+| |+|+..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~  153 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG  153 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred             HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence            77777889999999999998 588888888899999888665567777777 999874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.86  E-value=1.7e-20  Score=147.28  Aligned_cols=142  Identities=22%  Similarity=0.321  Sum_probs=106.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|.+|+|||||+|+|++........ ..+.|.......+.. ++..+.||||||+.++....+...+.+..++
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            45899999999999999999999987532222 334455544444443 7789999999999887665555555555554


Q ss_pred             HhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970           98 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (230)
                        ...++|+++||++++. +++..+..+++.+.+.++.....|+++|+||+|+..++...+++|++.
T Consensus       113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~  177 (262)
T 3def_A          113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK  177 (262)
T ss_dssp             --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred             --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence              2357899999988753 577777899999999988877779999999999876556677777763

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.85  E-value=2.8e-20  Score=146.67  Aligned_cols=142  Identities=23%  Similarity=0.337  Sum_probs=102.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..++|+++|.+|+|||||+|+|++........ ..+.|.......... .+..+.||||||+.++..........+..++
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            45899999999999999999999887533222 233444444443443 6789999999999876544444334443332


Q ss_pred             HhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970           98 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (230)
                        ...++|+++||++++. +++..+..+++.+.+.++...+.|+++|+||+|+..+++.++++|++.
T Consensus       116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~  180 (270)
T 1h65_A          116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK  180 (270)
T ss_dssp             --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred             --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH
Confidence              2457899999988753 577777888999988888776679999999999876444467777763

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.81  E-value=6.3e-19  Score=134.77  Aligned_cols=131  Identities=12%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH--HHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEI   93 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~   93 (230)
                      ....++|+++|.+|+|||||+|+|++...........++|............+..+.||||||+.+.......  ....+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3456899999999999999999999986321222334556655555554335678999999998765433321  12222


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..........+|++++|+|+.+.++..+..++..+...     ..|+++|+||+|+..
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~  158 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLT  158 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence            22222334567899999999878887777777766552     348999999999986

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.81  E-value=1.6e-18  Score=138.38  Aligned_cols=125  Identities=22%  Similarity=0.221  Sum_probs=90.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ...|+++|++|+|||||+|+|++........ .+++|...... +....+..+.||||||+.++.   ..+...+.....
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~-i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~   81 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRG-ILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVY   81 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEE-EEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEE-EEEeCCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence            3689999999999999999999987632221 22334333222 222367899999999998643   234455666677


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .++..+|++++|+|++++++..+..+++.+.+..   ...|+++|+||+|+..
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~  131 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLV---GKVPILLVGNKLDAAK  131 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCS
T ss_pred             HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc---CCCCEEEEEECcccCC
Confidence            7888999999999998788877766666665532   1358999999999976

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.80  E-value=7.3e-19  Score=140.97  Aligned_cols=128  Identities=19%  Similarity=0.298  Sum_probs=93.2

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ++++...|+++|.+|||||||+|+|+|....... ...++|.......... . +..+.||||||+.++. ......+.+
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~~   82 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHSM   82 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHHH
Confidence            3455579999999999999999999998763222 2334454444443333 5 7899999999998754 223455666


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEeCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ......++..+|++++|+|++++.+..+... ++.+..     ...|+++|+||+|+.
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~  135 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI  135 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence            6666677778899999999987788777555 555444     235899999999997

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.79  E-value=6.9e-18  Score=126.21  Aligned_cols=125  Identities=22%  Similarity=0.279  Sum_probs=80.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...++|+++|.+|+|||||+|+|++...........+.|........    +..+.+|||||+.+...... ....+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~   95 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSKS-EREAWGRM   95 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCHH-HHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCHH-HHHHHHHH
Confidence            45689999999999999999999987632222223334444443322    34789999999876544322 12222222


Q ss_pred             HH---hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~---~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..   .....+|++++|+|++++.+..+..+++++...     ..|+++|+||+|+..
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~  148 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIP  148 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence            22   223455999999999878887776666666542     348999999999986

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.76  E-value=2e-17  Score=127.05  Aligned_cols=136  Identities=17%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 026970           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG   90 (230)
Q Consensus        11 ~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~   90 (230)
                      .++......++|+++|.+|||||||+|+|++......  ...+.|.......... .+..+.+|||||+.+.........
T Consensus        21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~   97 (228)
T 2qu8_A           21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTI   97 (228)
T ss_dssp             -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHH
T ss_pred             cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhH
Confidence            3444445679999999999999999999998875322  2233455444444443 567899999999975332111100


Q ss_pred             HHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .  ...+...+..+|++++|+|++++.+........++..........|+++|+||+|+..
T Consensus        98 ~--~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~  156 (228)
T 2qu8_A           98 E--MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN  156 (228)
T ss_dssp             H--HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred             H--HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence            0  1122233567799999999986644332223333333322212458999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.76  E-value=2.4e-17  Score=121.39  Aligned_cols=126  Identities=17%  Similarity=0.247  Sum_probs=84.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...++|+++|.+|+|||||+|+|++......  ...+++.......+.. ++..+.+|||||........          
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~----------   72 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ--EAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMR----------   72 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS--SCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSC----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccC--CCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHH----------
Confidence            3458999999999999999999998765322  1223333333333443 67889999999987654322          


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHh
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  161 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l  161 (230)
                       ...+..+|++++|+|+++.........+..+..     ...|+++|+||+|+...+...+.+.+
T Consensus        73 -~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~  131 (178)
T 2lkc_A           73 -ARGAQVTDIVILVVAADDGVMPQTVEAINHAKA-----ANVPIIVAINKMDKPEANPDRVMQEL  131 (178)
T ss_dssp             -CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG-----GSCCEEEEEETTTSSCSCHHHHHHHH
T ss_pred             -HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh-----CCCCEEEEEECccCCcCCHHHHHHHH
Confidence             245678899999999986666555554443322     23589999999999764333444444

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.75  E-value=7e-17  Score=120.51  Aligned_cols=126  Identities=17%  Similarity=0.182  Sum_probs=85.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI   93 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~   93 (230)
                      ....++|+++|.+|+|||||+|+|++...... ....+.|.......    .+..+.+|||||+........  .....+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHH
Confidence            34558999999999999999999998873222 22233344333322    245688999999876443322  122233


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..........+|++++|+|+++..+......+.++...     ..|+++|+||+|+..
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~  147 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK  147 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence            33333344567999999999877777777777776654     348999999999875

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.75  E-value=2.1e-17  Score=119.64  Aligned_cols=121  Identities=26%  Similarity=0.258  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+++|.+|+|||||+|++++....... ...++|.......+.. .+..+.+|||||......    ....+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence            68999999999999999999987632111 2233444444444443 677899999999876432    12233344455


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+..+|++++|+|++++++.....+.+.+...     ..|+++|+||+|+..
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~  122 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPK  122 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGG
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECccccc
Confidence            67788999999999877887776666666552     348999999999875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.75  E-value=2.7e-17  Score=120.94  Aligned_cols=127  Identities=22%  Similarity=0.192  Sum_probs=82.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      +..+|+++|++|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.........  ..+... 
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~-   77 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVER--IGIERA-   77 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHH--HHHHHH-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHH--HHHHHH-
Confidence            3479999999999999999999987532121 1233444433333443 6778999999998753211110  111122 


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++.+.....++..+.+...  ...|+++|+||+|+..
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITG  129 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHC
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcc--cCCCEEEEEECccCCc
Confidence            234567899999999986666555666666665432  2358999999999854

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.74  E-value=4e-17  Score=128.83  Aligned_cols=128  Identities=21%  Similarity=0.267  Sum_probs=77.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCC----CCccceeeeeEEEEee-CC--eEEEEEeCCCCCCCCCCcH---
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSE---   87 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~---   87 (230)
                      ...+|+++|.+|+|||||+|+|++...+.....    ....|........... ++  ..+.||||||+.+......   
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            458999999999999999999999876544321    0022332222222221 33  3899999999976543221   


Q ss_pred             HHHHHH----HHHHHh---------hcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           88 FVGKEI----VKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        88 ~~~~~~----~~~~~~---------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+...+    ..++..         ...++|+++|+++.. ..+...+..+++.+..      ..|+++|+||+|.+.
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT  158 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence            122111    222221         113478999999765 3677777776666554      358999999999986

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.73  E-value=3.4e-17  Score=137.43  Aligned_cols=123  Identities=22%  Similarity=0.281  Sum_probs=84.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+++|.+|||||||+|+|++...... ...+++|.+.....+.+ ++..+.+|||||+....  .......+......
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            5899999999999999999998864322 23456677666666665 78899999999987432  11122345555556


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++..+|++++|+|+.++++..+..+.+++.+.     ..|+++|+||+|...
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~  124 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLR  124 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcc
Confidence            77889999999999878888887777766653     248999999999753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.73  E-value=6e-17  Score=119.36  Aligned_cols=118  Identities=20%  Similarity=0.200  Sum_probs=77.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ...++|+++|.+|+|||||+|+|++.....  ....+.+.......+.. ++  ..+.+|||||.......         
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------   74 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTI---------   74 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSC---------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhh---------
Confidence            455899999999999999999999876532  22333344443333433 44  57899999996544322         


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ....+..+|++++|+|++++.+... ..++..+....   ...|+++|+||+|+..
T Consensus        75 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~  127 (181)
T 3tw8_B           75 --TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPE  127 (181)
T ss_dssp             --CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGG
T ss_pred             --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCch
Confidence              2245678899999999985422222 23444444432   2358999999999765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.72  E-value=9.9e-17  Score=119.46  Aligned_cols=127  Identities=13%  Similarity=0.035  Sum_probs=79.6

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHH
Q 026970           10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEF   88 (230)
Q Consensus        10 ~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~   88 (230)
                      +..........+|+++|.+|+|||||+|+|++...........  +.......+... ....+.+|||||.......   
T Consensus        13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---   87 (189)
T 2gf9_A           13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI---   87 (189)
T ss_dssp             -CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--CCEEEEEEEEETTEEEEEEEEECCSCCSSCCS---
T ss_pred             CCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce--eEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh---
Confidence            3333444456899999999999999999999876422211122  222222222221 2357899999997654322   


Q ss_pred             HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                              ....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        88 --------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~  141 (189)
T 2gf9_A           88 --------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLED  141 (189)
T ss_dssp             --------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             --------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccc
Confidence                    2356678899999999974432222 344455554321  2358999999999875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.71  E-value=9.8e-17  Score=120.88  Aligned_cols=120  Identities=20%  Similarity=0.171  Sum_probs=74.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      .....+|+++|.+|+|||||+|+|++......   ..+++.......+.. ++  ..+.+|||||.....          
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------   76 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----------   76 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----------
Confidence            34558999999999999999999997764211   111122221222222 33  378899999976421          


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ......+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+..
T Consensus        77 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  133 (206)
T 2bov_A           77 -AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED  133 (206)
T ss_dssp             -HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGG
T ss_pred             -HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccc
Confidence             122233445789999999984322222 344444554432 22458999999999875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.71  E-value=1.3e-16  Score=119.24  Aligned_cols=120  Identities=20%  Similarity=0.194  Sum_probs=79.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++......  .....+.......+.. ++  ..+.+|||||.....           
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------   79 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFR-----------   79 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGC-----------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------
Confidence            4458999999999999999999998764222  2233343343343433 44  478999999965432           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .....++..+|++++|+|++++.+.. ...++..+......  ..|+++|+||+|+...
T Consensus        80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~  136 (196)
T 3tkl_A           80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK  136 (196)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred             hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence            12234557789999999998533222 14455555554322  3589999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.71  E-value=5.8e-17  Score=119.23  Aligned_cols=120  Identities=16%  Similarity=0.166  Sum_probs=75.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....+|+++|.+|+|||||+|+|++...........+.+...  ..+... ....+.+|||||.....           .
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~-----------~   79 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEVSGQKIKLQIWDTAGQERFR-----------A   79 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEE--EEEEETTEEEEEEEEECTTGGGTC-----------H
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCeEEEEEEEECCCChHhh-----------h
Confidence            445899999999999999999999876422211111222222  222221 23478999999965422           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|+++..+... ..++..+.....  ...|+++|+||+|+..
T Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~  134 (179)
T 1z0f_A           80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA  134 (179)
T ss_dssp             HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            23344557799999999985432222 344454555432  2458999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=4.5e-17  Score=121.70  Aligned_cols=124  Identities=18%  Similarity=0.099  Sum_probs=76.6

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      .......+|+++|.+|+|||||+|+|++...........+.+......... .....+.+|||||.....          
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~----------   86 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFH----------   86 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGG----------
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhH----------
Confidence            333556899999999999999999999876422212222222222222111 134578999999965422          


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ......+..+|++++|+|+++..+... ..++..+.+...  ...|+++|+||+|+..
T Consensus        87 -~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~  142 (192)
T 2fg5_A           87 -SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSD  142 (192)
T ss_dssp             -GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             -hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence             122244567899999999985433222 344555554321  2358999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.71  E-value=3.4e-16  Score=118.10  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=77.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++......  .....+.......+.. ++  ..+.+|||||.......          
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~----------   73 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTND--YISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTI----------   73 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTT--CCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCC----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHH----------
Confidence            458999999999999999999998764222  1222232332233333 33  47899999997654422          


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        74 -~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~  127 (206)
T 2bcg_Y           74 -TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKD  127 (206)
T ss_dssp             -CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred             -HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence             2245678899999999985433222 334455544322  2358999999999875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.71  E-value=7.6e-17  Score=117.70  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=73.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...+|+++|.+|+|||||+|++++.......  ....+.......+... ....+.+|||||.....           ..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~   71 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-----------AL   71 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--CCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCC--CCccceEEEEEEEEECCEEEEEEEEECCCcHhhh-----------hh
Confidence            4489999999999999999999977542211  1222222222222221 12368899999965422           23


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+..
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~  125 (170)
T 1z08_A           72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEK  125 (170)
T ss_dssp             -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGG
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence            3456678899999999975432222 3445555554332  358999999999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.71  E-value=7.5e-17  Score=118.98  Aligned_cols=120  Identities=22%  Similarity=0.194  Sum_probs=76.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....+|+++|.+|+|||||+|+|++...........+.+.  ....+... ....+.+|||||.....           .
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   76 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYH-----------S   76 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSE--EEEEEEETTEEEEEEEEECCCSGGGG-----------G
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEE--EEEEEEECCEEEEEEEEeCCCChhhh-----------h
Confidence            4457999999999999999999998765322211222222  22222221 23478999999965322           1


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+.. ...++..+.....  ...|+++|+||+|+..
T Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~  131 (181)
T 2efe_B           77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLD  131 (181)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence            2224456789999999997543322 2445555555422  2458999999999875

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.70  E-value=4.1e-17  Score=124.19  Aligned_cols=118  Identities=17%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ...+|+|+|.+|||||||+++++...+...    ...|....+.  ..... ....+.||||+|...+.           
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~----~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~-----------   76 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNT----YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR-----------   76 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCG-----------
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCC----cCCccceEEEEEEEEecceEEEEEEEECCCchhhh-----------
Confidence            347999999999999999999986654211    1122222221  12221 22468899999976543           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .....++++++++++|+|++++-+... ..++..+....+..  .|+++|+||+|+...
T Consensus        77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~  133 (216)
T 4dkx_A           77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK  133 (216)
T ss_dssp             GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG
T ss_pred             hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhc
Confidence            233456788999999999985544333 56666666655443  489999999998653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.70  E-value=1.4e-16  Score=118.05  Aligned_cols=119  Identities=17%  Similarity=0.153  Sum_probs=77.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++......  .....+.......+.. ++  ..+.+|||||....           .
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~   73 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------R   73 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------H
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence            4458999999999999999999997764221  1222222222233332 33  47899999996431           2


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~  129 (186)
T 2bme_A           74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDA  129 (186)
T ss_dssp             HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            344567788999999999985332222 334444444322  2458999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.70  E-value=1.6e-16  Score=119.09  Aligned_cols=124  Identities=15%  Similarity=0.097  Sum_probs=77.4

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        13 ~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      ..+....++|+|+|.+|||||||+|+|++.......   ...|.......+. ..+..+.+|||||.....         
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~---------   77 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETFE-KGRVAFTVFDMGGAKKFR---------   77 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEEE-ETTEEEEEEEECCSGGGG---------
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEEE-eCCEEEEEEECCCCHhHH---------
Confidence            344556689999999999999999999988753311   1123333333343 367899999999975432         


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc------cccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK------KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~------~~~~~~ivv~tk~D~~~  151 (230)
                        .....++..+|++++|+|+++..+... ..++..+......      ....|+++|+||+|+..
T Consensus        78 --~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  141 (199)
T 4bas_A           78 --GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG  141 (199)
T ss_dssp             --GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred             --HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence              233456788999999999985533222 2333333221110      01458999999999986

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.70  E-value=1.2e-16  Score=134.06  Aligned_cols=128  Identities=18%  Similarity=0.171  Sum_probs=83.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~   94 (230)
                      ....+|+++|++|||||||+|+|++....... ...++|.......+.. ++..+.||||||+.+.....+  +....+ 
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~-  249 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVL-  249 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHH-
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHH-
Confidence            34589999999999999999999998653222 2344555544444443 678899999999865432111  001111 


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      .. ...+..+|++++|+|++++.+..+..++..+.+.     ..++++|+||+|+...+
T Consensus       250 ~~-~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~  302 (436)
T 2hjg_A          250 RA-LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKD  302 (436)
T ss_dssp             HH-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCC
T ss_pred             HH-HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcc
Confidence            11 1234457999999999988888887776665542     35899999999998643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.70  E-value=1.9e-16  Score=118.76  Aligned_cols=129  Identities=14%  Similarity=0.090  Sum_probs=77.6

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      .+.....+|+++|.+|||||||++.+++........ ....+.......+.......+.+|||||...+......     
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----   88 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD-----   88 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----
Confidence            445566899999999999999999998864321111 11111111111111123468999999998654322200     


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                         ...++.++|++++|+|+++++......+..++.+........|+++|+||+|+..
T Consensus        89 ---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~  143 (196)
T 3llu_A           89 ---YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS  143 (196)
T ss_dssp             ---HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             ---cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence               0134456899999999987644444555566665422223458999999999875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.70  E-value=4.8e-17  Score=118.70  Aligned_cols=119  Identities=18%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...+|+++|.+|+|||||+|+|++...........+.+...  ...... ....+.+|||||.....           ..
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~   71 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFR-----------AL   71 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhh-----------cc
Confidence            34799999999999999999999876422212222222222  222221 23578999999975422           12


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~  125 (170)
T 1z0j_A           72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTD  125 (170)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGG
T ss_pred             cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccc
Confidence            2244567899999999985433222 345555555322  2358999999999875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.70  E-value=5.4e-16  Score=113.23  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=77.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|+|||||+|+|++.....     ...|.......+.. ++..+.+|||||.....           ..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~-----------~~   67 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PY   67 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChhhh-----------HH
Confidence            345899999999999999999998765421     11233333334443 57899999999975422           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+...  ...++......  ....|+++|+||+|+..
T Consensus        68 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  122 (171)
T 1upt_A           68 WRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQ  122 (171)
T ss_dssp             GGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence            3456778999999999985544332  22233333221  13458999999999876

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.70  E-value=3.2e-16  Score=117.64  Aligned_cols=113  Identities=16%  Similarity=0.214  Sum_probs=72.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC-----------------------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------------------   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------------------   68 (230)
                      ...+|+++|++|+|||||+|+|++......  ....+........+.. ++                             
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHEN--TNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ   82 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSCEEEEEEEET-TC-----------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCC--cCccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence            458999999999999999999998764211  1111111121122221 11                             


Q ss_pred             ----------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccccc
Q 026970           69 ----------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIF  137 (230)
Q Consensus        69 ----------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~  137 (230)
                                ..+.+|||||......           .....+..+|++++|+|++++.+... ..++..+....+    
T Consensus        83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----  147 (208)
T 3clv_A           83 HNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----  147 (208)
T ss_dssp             --CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred             cccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence                      6789999999654331           22244567899999999985433222 344444444322    


Q ss_pred             ceEEEEEeCCC
Q 026970          138 DYMIVVFTGGD  148 (230)
Q Consensus       138 ~~~ivv~tk~D  148 (230)
                      .|+++|+||+|
T Consensus       148 ~piilv~NK~D  158 (208)
T 3clv_A          148 YIIILVANKID  158 (208)
T ss_dssp             CEEEEEEECTT
T ss_pred             CcEEEEEECCC
Confidence            68999999999

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=5.1e-17  Score=118.47  Aligned_cols=118  Identities=19%  Similarity=0.150  Sum_probs=74.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..+|+++|++|+|||||+|+|++.......  .+..+.......+... ....+.+|||||.....           ...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~   69 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-----------SLA   69 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCChhhh-----------hhh
Confidence            378999999999999999999977642221  1222222222222221 22478999999965321           223


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~  122 (170)
T 1ek0_A           70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQ  122 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccc
Confidence            345577899999999985432222 344444544432  2358999999999875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.70  E-value=7.6e-17  Score=117.53  Aligned_cols=119  Identities=18%  Similarity=0.149  Sum_probs=74.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...+|+++|.+|+|||||+|+|++...........+.+.  ........ .+..+.+|||||.....           ..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~   71 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH-----------SL   71 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh-----------hh
Confidence            347999999999999999999997654222111222222  12222221 24578999999965421           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~  125 (170)
T 1r2q_A           72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLAN  125 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence            2345577899999999985432222 344444444322  2358999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=1e-16  Score=117.05  Aligned_cols=118  Identities=22%  Similarity=0.216  Sum_probs=72.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||+|+|++.........    |....+......++  ..+.+|||||..+..           ..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~   67 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP----TVEDTYRQVISCDKSICTLQITDTTGSHQFP-----------AM   67 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC----CSCEEEEEEEEETTEEEEEEEEECCSCSSCH-----------HH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----CccccEEEEEEECCEEEEEEEEECCCchhhH-----------HH
Confidence            47999999999999999999998754221111    11111111111122  468999999976432           11


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|+..
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~  123 (172)
T 2erx_A           68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  123 (172)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence            2223345699999999984432222 345555555433223458999999999865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.70  E-value=2.7e-16  Score=132.58  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=85.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.+.....+. .+.+...
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~-~e~~~~~  269 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYET-TEKYSVL  269 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCC-CSHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchH-HHHHHHH
Confidence            45689999999999999999999987643332 2334455544444443 6789999999998653211100 0111111


Q ss_pred             -HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970           97 -IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (230)
Q Consensus        97 -~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (230)
                       ...++..+|++++|+|+++.++..+..++..+.+. +    .|+++|+||+|+...+.
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~  323 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDE  323 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCS
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCch
Confidence             11234567999999999988888888888777662 2    48999999999986443

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.69  E-value=1e-16  Score=119.83  Aligned_cols=124  Identities=14%  Similarity=0.180  Sum_probs=74.5

Q ss_pred             CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHH
Q 026970           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFV   89 (230)
Q Consensus        12 ~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~   89 (230)
                      .+.+.....+|+++|.+|+|||||+|+|++......  .....+.......+.. ++  ..+.+|||||....       
T Consensus        19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------   88 (192)
T 2il1_A           19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------   88 (192)
T ss_dssp             ---CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------
Confidence            344455668999999999999999999998764222  1222233333333333 33  47899999996431       


Q ss_pred             HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          .......+..+|++++|+|+++..+... ..++..+.....  ...|+++|+||+|+..
T Consensus        89 ----~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~  145 (192)
T 2il1_A           89 ----NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET  145 (192)
T ss_dssp             ----HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             ----HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence                1222233456799999999985433332 344455544322  2358999999999865

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.69  E-value=2.4e-16  Score=118.63  Aligned_cols=118  Identities=12%  Similarity=0.072  Sum_probs=75.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..+|+++|.+|+|||||+|+|++........  ...........+... ....+.+|||||....           ....
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~~   74 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTIT   74 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCC--CCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CccceeEEEEEEEECCeEEEEEEEECCCchhh-----------cchH
Confidence            4799999999999999999999876422211  111222222222221 2357899999997532           1334


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~  127 (203)
T 1zbd_A           75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMED  127 (203)
T ss_dssp             HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTT
T ss_pred             HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCc
Confidence            456678899999999975432222 334444444321  2358999999999875

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.69  E-value=1e-15  Score=113.53  Aligned_cols=116  Identities=14%  Similarity=0.130  Sum_probs=77.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|+|||||+|++++...  ..   ...|.......+.. ++..+.+|||||...           +...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~---~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DT---ISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCC--SS---CCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCC--Cc---ccccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence            4568999999999999999999998762  11   11233333334443 678999999999742           2233


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+...  ...++......  ....|+++|+||+|+..
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  133 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPG  133 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence            4466788999999999985533322  22223332221  12458999999999876

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.69  E-value=1.8e-16  Score=123.73  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~   97 (230)
                      ++|+++|.+|+|||||+|+|+|.......  .+++|.......+.. ++..+.+|||||+.+......  ...+.+...+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            58999999999999999999998643332  345666665555554 678999999999987653210  1112222222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      . ....+|++++|+|+++ . .....+..++.+     ...|+++|+||+|...
T Consensus        79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~  124 (256)
T 3iby_A           79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFE-----LGKPVVVALNMMDIAE  124 (256)
T ss_dssp             H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTT-----SCSCEEEEEECHHHHH
T ss_pred             H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHH-----cCCCEEEEEEChhcCC
Confidence            1 1267899999999984 2 222333333332     2358999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.69  E-value=3.7e-17  Score=137.84  Aligned_cols=124  Identities=23%  Similarity=0.213  Sum_probs=82.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..++|+|+|.+|||||||+|+|+|...... ....++|.........+ .+..+.+|||||+....   +.....+....
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~   96 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQA   96 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHHH
Confidence            347999999999999999999998765322 23456677666665554 67789999999987422   22345566666


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++..+|++|+|+|+.+.++..+..+.+.+.+     ...|+++|+||+|...
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~  145 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE  145 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence            667778899999999987898888877777654     2358999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.69  E-value=9.9e-17  Score=119.80  Aligned_cols=119  Identities=18%  Similarity=0.164  Sum_probs=74.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...+|+++|.+|+|||||+|+|++........  ...........+.. .....+.+|||||......           .
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~   90 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-----------I   90 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-----------T
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-----------h
Confidence            45799999999999999999999876432211  11122221122221 1235789999999865432           1


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+... ..++..+....  ....|+++|+||+|+..
T Consensus        91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~  144 (193)
T 2oil_A           91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQ  144 (193)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGG
T ss_pred             hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCccc
Confidence            2234567899999999974332211 23333333321  12458999999999875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.69  E-value=1.5e-16  Score=117.26  Aligned_cols=122  Identities=14%  Similarity=0.111  Sum_probs=72.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++......  ..+..+.......+...  ....+.+|||||....           .
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~   72 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQ--YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF-----------Q   72 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTT--C---CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh-----------h
Confidence            4558999999999999999999998764221  11222222222223321  2357899999995432           2


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|++++.+... ..++..+.....  .....|+++|+||+|+..
T Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  132 (182)
T 1ky3_A           73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  132 (182)
T ss_dssp             ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence            333456778999999999975432222 344455544432  113458999999999854

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.69  E-value=4.5e-16  Score=116.92  Aligned_cols=123  Identities=20%  Similarity=0.087  Sum_probs=73.4

Q ss_pred             CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHH
Q 026970           11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEF   88 (230)
Q Consensus        11 ~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~   88 (230)
                      ..........+|+++|.+|+|||||++++++.... ..  ..+++.......+. .++.  .+.+|||||.......   
T Consensus        12 ~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~--~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~---   84 (201)
T 2q3h_A           12 RAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TE--YIPTAFDNFSAVVS-VDGRPVRLQLCDTAGQDEFDKL---   84 (201)
T ss_dssp             --------CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEE-ETTEEEEEEEEECCCSTTCSSS---
T ss_pred             ccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CC--CCCcccceeEEEEE-ECCEEEEEEEEECCCCHHHHHH---
Confidence            33444566789999999999999999999987631 11  11222211112222 2443  6779999998764422   


Q ss_pred             HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                              ....+.++|++++|+|++++.+....  .++..+.....   ..|+++|+||+|+..
T Consensus        85 --------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  138 (201)
T 2q3h_A           85 --------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE  138 (201)
T ss_dssp             --------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred             --------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence                    22456788999999999854333332  35555555432   458999999999875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.69  E-value=1.1e-15  Score=112.76  Aligned_cols=118  Identities=20%  Similarity=0.199  Sum_probs=73.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++...... . . + |....+......++  ..+.+|||||...+....         
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~-~-~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------   71 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS-Y-D-P-TIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP---------   71 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSC-C-C-T-TCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC---------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCC-C-C-C-CccccEEEEEEECCEEEEEEEEeCCCchhhhHHH---------
Confidence            458999999999999999999996553111 1 1 1 22222222222244  467899999987654222         


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ...+..+|++++|+|++++-+... ..++..+.+.+. ....|+++|+||+|+..
T Consensus        72 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~  125 (181)
T 3t5g_A           72 --QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM  125 (181)
T ss_dssp             --GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTT
T ss_pred             --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence              245678899999999984322222 334444444332 22458999999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.69  E-value=5.4e-17  Score=136.10  Aligned_cols=122  Identities=22%  Similarity=0.186  Sum_probs=78.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+++|.+|||||||+|+|++...... ....++|.+..+....+ .+..+.+|||||+.....   .....+......
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDE---PFLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcch---hHHHHHHHHHHH
Confidence            6899999999999999999998764322 23456676666665554 667899999999864221   144555555566


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+..+|++++|+|+.++++..+..+.+.+.+     ...|+++|+||+|...
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence            6678899999999988888877666655543     2358999999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.68  E-value=2.4e-16  Score=117.47  Aligned_cols=121  Identities=14%  Similarity=0.060  Sum_probs=77.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .....+|+++|.+|+|||||+|+|++...+...   ...|.......+.. ++..+.+|||||.....           .
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~   82 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------N   82 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------G
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------H
Confidence            345689999999999999999999987632222   12233333444443 56899999999976532           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+..
T Consensus        83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  140 (190)
T 2h57_A           83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD  140 (190)
T ss_dssp             GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence            22355678899999999985322221 2333333332110 02458999999999975

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.68  E-value=3.4e-16  Score=118.56  Aligned_cols=119  Identities=14%  Similarity=0.171  Sum_probs=76.0

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      .....+|+++|.+|+|||||+|+|++......  ...+++.......+.. ++  ..+.+|||||.......        
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~--------   85 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI--------   85 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCS--SSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC--------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH--------
Confidence            34568999999999999999999997764221  1222233333333333 44  57899999997643322        


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                         ....+..+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+.
T Consensus        86 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~  138 (213)
T 3cph_A           86 ---TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME  138 (213)
T ss_dssp             ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCS
T ss_pred             ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCc
Confidence               1234567899999999974332222 3455555554322  35899999999984

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.68  E-value=2.5e-16  Score=116.46  Aligned_cols=118  Identities=14%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .....+|+++|.+|+|||||+|+|++........ ..+    .....+.. ++..+.+|||||.....           .
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~   80 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG----SNVEEIVI-NNTRFLMWDIGGQESLR-----------S   80 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSS----SSCEEEEE-TTEEEEEEEESSSGGGT-----------C
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCc----eeeEEEEE-CCEEEEEEECCCCHhHH-----------H
Confidence            3456899999999999999999999876522111 112    12223333 67899999999985432           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+... ..++..+.+.. .....|+++|+||+|+..
T Consensus        81 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~  136 (181)
T 2h17_A           81 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE  136 (181)
T ss_dssp             GGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCccc
Confidence            22356678899999999986544332 22333222211 023458999999999875

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.68  E-value=3.7e-16  Score=123.25  Aligned_cols=122  Identities=20%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~   96 (230)
                      .++|+++|.+|+|||||+|+|+|......  ..+++|.......+.. .+..+.+|||||+.+.....  ......+...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            47999999999999999999999874222  2345566665555554 56789999999998865311  1112222222


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      + .....+|++++|+|+++ . .....+...+.+.     ..|+++|+||+|+..
T Consensus        80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A           80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAE  126 (274)
T ss_dssp             H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred             H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence            2 22368899999999984 2 2334444555543     358999999999764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.68  E-value=4.6e-16  Score=115.48  Aligned_cols=118  Identities=21%  Similarity=0.231  Sum_probs=71.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++......   ..+++.......... ++.  .+.+|||||........         
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------   69 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMR---------   69 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTH---------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHH---------
Confidence            358999999999999999999997764211   112222222222222 444  47789999976543221         


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ...+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+..
T Consensus        70 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~  123 (189)
T 4dsu_A           70 --DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPS  123 (189)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSS
T ss_pred             --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcc
Confidence              123345689999999985432222 344444544322 23458999999999874

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=6.6e-16  Score=113.76  Aligned_cols=121  Identities=19%  Similarity=0.170  Sum_probs=74.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++....... ....++.......+.. ++  ..+.+|||||.....           
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------   74 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR-----------   74 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence            34589999999999999999999987642211 1122222222222222 33  378899999965322           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ......+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..+
T Consensus        75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSC
T ss_pred             HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcc
Confidence            233455677899999999985433222 345555555432  24589999999998753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.68  E-value=5.5e-16  Score=116.61  Aligned_cols=121  Identities=23%  Similarity=0.217  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE-EEe-eCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVL-KDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      +.....+|+++|.+|+|||||+|+|++......  ..  .|....+.. ... .....+.+|||||...+...       
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------   88 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--YD--PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-------   88 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--CC--CCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--CC--CccceEEEEEEEECCEEEEEEEEECCCccchHHH-------
Confidence            334568999999999999999999998764211  11  122222111 111 13467899999997765432       


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          ....+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+..
T Consensus        89 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  143 (201)
T 3oes_A           89 ----PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSP  143 (201)
T ss_dssp             ----CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG
T ss_pred             ----HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcc
Confidence                2256678899999999984322221 233333333211 12458999999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.68  E-value=1.3e-16  Score=118.06  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++......  ..++++.......+.. ++  ..+.+|||||.....           .
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~   72 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR-----------T   72 (183)
T ss_dssp             EEEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhh-----------h
Confidence            458999999999999999999997653211  1112222222223332 44  578999999975422           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~  127 (183)
T 2fu5_C           73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVND  127 (183)
T ss_dssp             -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCS
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCc
Confidence            23456678999999999985432222 334444444322  2358999999999875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.68  E-value=6.7e-16  Score=117.16  Aligned_cols=117  Identities=19%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+++|++......   ..+++  .....+....  +..+.+|||||...           +..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~   69 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LRF   69 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc---cCCcc--eeeEEEEecCCCccEEEEEECCCChh-----------HHH
Confidence            458999999999999999999997763211   11222  2222233322  56899999999742           112


Q ss_pred             -HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCC
Q 026970           96 -CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 -~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~  151 (230)
                       ....++.++|++++|+|+++ +........+.+...+.    .....|+++|+||+|+..
T Consensus        70 ~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (214)
T 2fh5_B           70 QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  129 (214)
T ss_dssp             HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence             23345678899999999983 32223333333333321    123458999999999876

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.68  E-value=3.1e-16  Score=114.12  Aligned_cols=118  Identities=20%  Similarity=0.091  Sum_probs=74.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...+|+++|++|+|||||+|+|++......  .....+.......+.... ...+.+|||||........          
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   71 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT----------   71 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC----------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH----------
Confidence            358999999999999999999998754221  112222222222232211 3478999999965433221          


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ...+..+|++++|+|++++.+... ..++..+....   ...|+++|+||+|+..
T Consensus        72 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~  123 (168)
T 1z2a_A           72 -KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLD  123 (168)
T ss_dssp             -HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGG
T ss_pred             -HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCc
Confidence             234567899999999985322221 33444444433   2358999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.68  E-value=1.5e-15  Score=113.08  Aligned_cols=117  Identities=19%  Similarity=0.119  Sum_probs=76.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|+|||||+|+|++......    ...|....+..+. ..+..+.+|||||...           +...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~   83 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKIT-KGNVTIKLWDIGGQPR-----------FRSM   83 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEE-ETTEEEEEEEECCSHH-----------HHTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEE-eCCEEEEEEECCCCHh-----------HHHH
Confidence            3458999999999999999999997654211    1223333333343 3678999999999642           2223


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|+++.-+..  ....++......  ....|+++|+||+|+..
T Consensus        84 ~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (188)
T 1zd9_A           84 WERYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPG  138 (188)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             HHHHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence            334567889999999997543322  222333333221  13458999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.68  E-value=2.1e-16  Score=115.31  Aligned_cols=117  Identities=13%  Similarity=0.143  Sum_probs=73.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..+|+++|++|+|||||+|+|++......  ..++.+.......+...+ ...+.+|||||........           
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~-----------   69 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT-----------   69 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC-----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH-----------
Confidence            47999999999999999999997764221  122222223233333312 2478899999976543221           


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ...+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+.
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~  121 (170)
T 1g16_A           70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDME  121 (170)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCC
Confidence            234567899999999974432222 345555555432  235899999999984

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.67  E-value=2e-16  Score=116.39  Aligned_cols=122  Identities=15%  Similarity=0.096  Sum_probs=75.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++........  +.++.......+...+  ...+.+|||||...+...         
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~---------   72 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM---------   72 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--HTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT---------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--CceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch---------
Confidence            345899999999999999999999875421111  1111222222333322  268999999997654321         


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ivv~tk~D~~~  151 (230)
                        ....+..+|++++|+|++++.+... ..++..+....... ..+++++|+||+|+..
T Consensus        73 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~  129 (178)
T 2hxs_A           73 --LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH  129 (178)
T ss_dssp             --HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred             --hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence              2234567899999999985433222 34455555432211 1234899999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.67  E-value=2.4e-16  Score=115.92  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||+|+|++......  .....+.......+.. ++  ..+.+|||||.....           ..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~~   79 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------SL   79 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------HH
Confidence            47999999999999999999997654221  2222333333333333 33  478999999965422           11


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+.. ...++..+.....  ...|+++|+||+|+..
T Consensus        80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~  133 (179)
T 2y8e_A           80 IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSD  133 (179)
T ss_dssp             SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGG
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence            223345679999999997432222 1344444444332  2358999999999875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=120.33  Aligned_cols=119  Identities=16%  Similarity=0.124  Sum_probs=70.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....+|+++|.+|+|||||+|+|++...........+.+...  ..+... ....+.+|||||.....           .
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~-----------~   92 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQERFR-----------S   92 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEETTEEEEEEEEECTTCTTCH-----------H
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEECCEEEEEEEEECCCCcchh-----------h
Confidence            445899999999999999999999775422111111112211  222221 22468999999975421           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      .....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+.
T Consensus        93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~  146 (199)
T 2p5s_A           93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIR  146 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccc
Confidence            22233456799999999975433222 344555554322  235899999999986

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.67  E-value=1e-15  Score=112.16  Aligned_cols=120  Identities=21%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|++|+|||||+|+|++....... ...+.+....  .+.. ++  ..+.+|||||.....         ...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~~~~~~~D~~g~~~~~---------~~~   69 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYER--TLTV-DGEDTTLVVVDTWEAEKLD---------KSW   69 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEE--EEEE-TTEEEEEEEECCC----------------CH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEE--EEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence            3589999999999999999999987653221 1222232222  2222 33  368899999975421         112


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+... ..++..+.+.. .....|+++|+||+|+..
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~  125 (175)
T 2nzj_A           70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLAR  125 (175)
T ss_dssp             HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTT
T ss_pred             hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhcc
Confidence            22345677899999999985433222 23334444321 122458999999999875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.67  E-value=5.3e-16  Score=114.23  Aligned_cols=121  Identities=22%  Similarity=0.234  Sum_probs=74.2

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      +.....+|+++|.+|+|||||+|+|++......   ..+ |....+......++  ..+.+|||||.........     
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~-----   75 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD---YDP-TIEDSYTKICSVDGIPARLDILDTAGQEEFGAMRE-----   75 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS---CCT-TCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHH-----
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc---cCC-CcCceEEEEEEECCEEEEEEEEECCCchhhHHHHH-----
Confidence            445568999999999999999999998753211   111 22222222111243  4788999999765432211     


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                            ..+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+..
T Consensus        76 ------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  128 (181)
T 2fn4_A           76 ------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES  128 (181)
T ss_dssp             ------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred             ------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence                  22345689999999984322221 334444433322 22358999999999875

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=6.2e-16  Score=116.51  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=77.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++.....  .....++.......+.. ++  ..+.+|||||...           +..
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~   90 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRS   90 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence            34799999999999999999999765421  11222222332223333 34  4789999999642           224


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~  145 (201)
T 2ew1_A           91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE  145 (201)
T ss_dssp             HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence            45567788999999999975432221 345555555422  2358999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=1.6e-15  Score=112.66  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|+|||||+|+|++.......+     |.......+.. ++..+.+|||||.....           ..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~   76 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SS   76 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-----CSCSSCEEEEE-TTEEEEEEECCC----C-----------GG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-----CCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence            345899999999999999999999766532211     22222233333 67899999999986432           11


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++-+... ..++..+.... .....|+++|+||+|+..
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~  131 (187)
T 1zj6_A           77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE  131 (187)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTT
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcC
Confidence            2234577899999999986543332 23333333221 013468999999999875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.67  E-value=3.9e-16  Score=116.43  Aligned_cols=119  Identities=16%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++.......  ....+.......+.. ++  ..+.+|||||........        
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------   87 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSIT--------   87 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCC--------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhH--------
Confidence            34579999999999999999999987642221  122222222222332 33  478999999976543221        


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                         ...+..+|++++|+|+++..+... ..++..+.....  ...|+++|+||+|+..
T Consensus        88 ---~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~  140 (191)
T 2a5j_A           88 ---RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLES  140 (191)
T ss_dssp             ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             ---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCC
Confidence               234567899999999974322222 344445544322  2458999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=3.4e-16  Score=117.28  Aligned_cols=119  Identities=23%  Similarity=0.198  Sum_probs=74.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++........    .|....+......+  ...+.+|||||.....           .
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~   71 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI----PTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-----------A   71 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS----CCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-----------H
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCccc----CccccceeEEEEECCEEEEEEEEeCCChHHhH-----------H
Confidence            45899999999999999999999765422111    12211111111113  2478899999975421           1


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|+..
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            22233445799999999974322222 345555555443323458999999999875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.67  E-value=4e-16  Score=117.62  Aligned_cols=122  Identities=14%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....+|+++|.+|+|||||+|+|++.....  ......+.......+.... ...+.+|||||.......          
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------   73 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL----------   73 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS----------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh----------
Confidence            455899999999999999999999876422  1222223333333333212 247899999997543321          


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                       ....+..+|++++|+|++++.+... ..++..+......  ....|+++|+||+|+..
T Consensus        74 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (207)
T 1vg8_A           74 -GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  131 (207)
T ss_dssp             -CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             -HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence             1245678899999999975432222 3444445444321  12458999999999874

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.67  E-value=5.3e-16  Score=124.28  Aligned_cols=125  Identities=19%  Similarity=0.178  Sum_probs=83.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-HHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI-VKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~-~~~~   97 (230)
                      ..+|+++|.+|||||||+|++++....... ...+.|....+......++..+.+|||||...+       ...+ ....
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~   74 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQK   74 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTTH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhHH
Confidence            479999999999999999999887422111 134456666665555435678999999996421       1111 2233


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+.++|++++|+|++++-+..+. .+..++..........|+++|+||+|+..
T Consensus        75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            4556789999999999865544442 34444444332223458999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.67  E-value=7.2e-16  Score=111.87  Aligned_cols=113  Identities=12%  Similarity=0.057  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|.+|+|||||+|++++......     ..|.......+.. .+..+.+|||||....           ......
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~   63 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH   63 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHH
Confidence            3799999999999999999987654211     1133333333333 5678999999997531           133345


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      .+..+|++++|+|++++-+..  ....++......  ....|+++|+||+|+..
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  115 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPN  115 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence            678899999999998543222  222333333221  12458999999999875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.67  E-value=3.5e-16  Score=114.99  Aligned_cols=120  Identities=18%  Similarity=0.070  Sum_probs=76.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++.......  .+..+.......+.. ++  ..+.+|||||...           +..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~   71 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS   71 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence            4589999999999999999999976542111  122222222222332 33  4789999999643           123


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|+++..+... ..++..+......  ....|+++|+||+|+..
T Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  130 (177)
T 1wms_A           72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  130 (177)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence            44567788999999999985432222 3455555554321  13458999999999863

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.67  E-value=5.2e-16  Score=115.53  Aligned_cols=120  Identities=15%  Similarity=0.111  Sum_probs=76.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++......  .....+.......+.. ++  ..+.+|||||...           +.
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~   83 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--TEATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FR   83 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--CCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hh
Confidence            4558999999999999999999997654222  1222222222222332 33  4789999999532           11


Q ss_pred             -HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 -KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 -~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ......+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+..
T Consensus        84 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  141 (189)
T 1z06_A           84 KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS  141 (189)
T ss_dssp             TTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred             hhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence             223345678899999999984332222 345555555431 22458999999999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.67  E-value=1.2e-15  Score=113.96  Aligned_cols=136  Identities=9%  Similarity=0.054  Sum_probs=81.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEE---e-eCCeEEEEEeCCCCCCCCCCc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTV---L-KDGQVVNVIDTPGLFDFSAGS   86 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~---~-~~~~~~~liDtPG~~~~~~~~   86 (230)
                      ....+|+++|.+|||||||++.+.+.........      ....|....+....   . .....+.+|||||.....   
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---   88 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---   88 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence            3458999999999999999999887643211110      01122222222111   1 123478999999976533   


Q ss_pred             HHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCCCC-hhhHHHHh
Q 026970           87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELEDN-DETLEDYL  161 (230)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~~~-~~~~~~~l  161 (230)
                              .....++..+|++++|+|+++.....+...+..+...+.    .....|+++|+||+|+.... ...+.+++
T Consensus        89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~  160 (198)
T 3t1o_A           89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV  160 (198)
T ss_dssp             --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH
Confidence                    333356788999999999984443334444433333221    12345899999999987531 33455555


Q ss_pred             cc
Q 026970          162 GR  163 (230)
Q Consensus       162 ~~  163 (230)
                      +.
T Consensus       161 ~~  162 (198)
T 3t1o_A          161 DP  162 (198)
T ss_dssp             CT
T ss_pred             Hh
Confidence            53

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.67  E-value=1.4e-15  Score=112.43  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=74.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|++|||||||+|++++.......+     |.......+.. ++..+.++||||.......           
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------   78 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSY-KNLKLNVWDLGGQTSIRPY-----------   78 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEEEE-TTEEEEEEEEC----CCTT-----------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-----cCccceEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence            455899999999999999999999776522211     21122233333 5789999999998654322           


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+...  ...++......  ....|+++|+||+|+..
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  133 (183)
T 1moz_A           79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPG  133 (183)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence            2355678899999999985544332  22333443322  23468999999999875

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.67  E-value=5.7e-16  Score=130.61  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.++....+   ........
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~ve---~~gi~~~~  307 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEEIE---HEGIRRSR  307 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhHHH---HHHHHHHH
Confidence            468999999999999999999988542221 2344555554444554 788999999999876331111   11112233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ..+..+|++++|+|+++..+.... ....++.. +.   ..|+++|+||+|+....
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~~  359 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAANA  359 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTTT
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCcc
Confidence            466789999999999877665321 22222222 22   35899999999998643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.67  E-value=4.2e-16  Score=113.27  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      +..+|+++|.+|+|||||+|+|++......   ..+++.......+.. ++  ..+.+|||||.....           .
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~   67 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-----------A   67 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CH-----------H
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCC---CCCCcceEEEEEEEE-CCEEEEEEEEECCCcchhH-----------H
Confidence            348999999999999999999997764211   111111111122222 33  478899999965321           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+..
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  123 (168)
T 1u8z_A           68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED  123 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccc
Confidence            22233456799999999984432222 344455555432 12458999999999865

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.67  E-value=1.6e-15  Score=112.81  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=77.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|+|||||+|++++.......+     |.......+.. ++..+.+|||||.......           
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------   82 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPY-----------   82 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence            345899999999999999999998766432211     22222333333 5789999999998754422           


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++-+...  ...++......  ....|+++|+||+|+..
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  137 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPD  137 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence            1245678899999999985543332  22233333221  12458999999999976

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.67  E-value=4.3e-16  Score=113.28  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||+|+|++......  ..  .|....+. ..... ....+.+|||||......           .
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~   67 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEK--YD--PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----------M   67 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCS--CC--CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----------H
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCC--CC--CCccceEEEEEEECCEEEEEEEEECCChHHHHH-----------H
Confidence            47999999999999999999997654211  11  12222221 12221 234788999999765431           1


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+..
T Consensus        68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  122 (167)
T 1c1y_A           68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED  122 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence            1123345689999999985422222 344455555432 22458999999999865

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.66  E-value=2.4e-16  Score=119.99  Aligned_cols=120  Identities=21%  Similarity=0.223  Sum_probs=75.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++...........+.+.  .........+  ..+.+|||||.........       
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------   79 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN--HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD-------   79 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE--EEEEEEBTTSCEEEEEEEEECSGGGTSCCCH-------
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee--EEEEEEeCCCcEEEEEEEecCCchhhchHHH-------
Confidence            3458999999999999999999997764221111111111  1111211122  5789999999765432222       


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          ..+..+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+..
T Consensus        80 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~  131 (218)
T 4djt_A           80 ----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKN  131 (218)
T ss_dssp             ----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC-
T ss_pred             ----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcc
Confidence                34567899999999985543332 3455556555432  248999999999875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.66  E-value=6.8e-16  Score=112.24  Aligned_cols=119  Identities=20%  Similarity=0.056  Sum_probs=62.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|+|||||+|++++....... ...+.+.. ....+. .....+.++||||...+.           ....
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~-----------~~~~   67 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYD-RSIVVD-GEEASLMVYDIWEQDGGR-----------WLPG   67 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE-EEEEET-TEEEEEEEEECC---------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceE-EEEEEC-CEEEEEEEEECCCCccch-----------hhhh
Confidence            379999999999999999999987642221 11222221 111111 123468899999976432           2233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .++..+|++++|+|++++-+... ..++..+.+.. .....|+++|+||+|+...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~  121 (166)
T 3q72_A           68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRS  121 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred             hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccc
Confidence            45577899999999985432222 23333343321 1234589999999998753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.66  E-value=2.4e-15  Score=112.18  Aligned_cols=116  Identities=9%  Similarity=0.029  Sum_probs=75.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|++|||||||++++++......     ..|.......+.. ++..+.++||||......           ..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~~   84 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARR-----------LW   84 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTT-----------SG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHH-----------HH
Confidence            347999999999999999999997654211     1233333334443 668999999999865332           22


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++..+|++++|+|++++-+... ..++..+.+.. .....|+++|+||+|+..
T Consensus        85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred             HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcC
Confidence            355678899999999985543322 23333332211 123458999999999875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.66  E-value=6.6e-16  Score=112.09  Aligned_cols=117  Identities=18%  Similarity=0.165  Sum_probs=71.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|++|+|||||+|++++......  .. +.+.......... ++  ..+.++||||.....           ..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~~   67 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEK--YD-PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM   67 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSC--CC-TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------HH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCccc--CC-CCcceeEEEEEEE-CCEEEEEEEEECCCchhhH-----------HH
Confidence            47999999999999999999997654221  11 1111111222222 33  358899999975421           11


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+..
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  122 (167)
T 1kao_A           68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES  122 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred             HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc
Confidence            2233445689999999984332222 334444444332 12458999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.66  E-value=7.3e-16  Score=113.97  Aligned_cols=124  Identities=23%  Similarity=0.203  Sum_probs=74.1

Q ss_pred             CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHH
Q 026970           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFV   89 (230)
Q Consensus        12 ~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~   89 (230)
                      .+.......+|+++|.+|+|||||+|+|++......  ...  |....+......++.  .+.+|||||........   
T Consensus        11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---   83 (183)
T 3kkq_A           11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD--YDP--TIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR---   83 (183)
T ss_dssp             ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCT--TCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH---
T ss_pred             CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCC--CccceeEEEEEeCCcEEEEEEEECCCchhhHHHH---
Confidence            344455668999999999999999999997643211  111  222222222222444  45679999976533221   


Q ss_pred             HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                              ..++..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+..
T Consensus        84 --------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~  137 (183)
T 3kkq_A           84 --------EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH  137 (183)
T ss_dssp             --------HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST
T ss_pred             --------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh
Confidence                    123345799999999985422221 344444444322 22458999999999865

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.66  E-value=6.7e-16  Score=115.20  Aligned_cols=120  Identities=10%  Similarity=0.119  Sum_probs=71.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...++|+++|.+|+|||||+|+|++.......... ..+...     .. .+..+.+|||||.........       ..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~-~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~~-------~~  111 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSAA-----DY-DGSGVTLVDFPGHVKLRYKLS-------DY  111 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccC-CCceee-----ee-cCCeEEEEECCCCchHHHHHH-------HH
Confidence            45589999999999999999999987542211111 111111     11 456788999999876543222       22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-----cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK-----KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~-----~~~~~~ivv~tk~D~~~  151 (230)
                      +......+|++++|+|++ ...........++...+..     ....|+++|+||+|+..
T Consensus       112 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             HHHHGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             HHhhcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            333334579999999997 1111222222333332211     12458999999999986

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.66  E-value=1.2e-15  Score=113.51  Aligned_cols=121  Identities=12%  Similarity=0.018  Sum_probs=76.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeee-eEEEEeeC----------CeEEEEEeCCCCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD----------GQVVNVIDTPGLFDFSAG   85 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~liDtPG~~~~~~~   85 (230)
                      ....+|+++|.+|+|||||+|+|++.......  ......... ...+....          ...+.++||||...    
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----   82 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF--ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER----   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc--ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH----
Confidence            34589999999999999999999976542111  111111111 11222211          24799999999743    


Q ss_pred             cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                             +.......+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+..
T Consensus        83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  141 (195)
T 3bc1_A           83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED  141 (195)
T ss_dssp             -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred             -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence                   12334566788999999999975433222 344444544322 12458999999999865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.66  E-value=4.5e-16  Score=124.30  Aligned_cols=122  Identities=19%  Similarity=0.250  Sum_probs=82.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC-CCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~~~~~~~~~   97 (230)
                      ...|+++|++|+|||||+|+|+|....... ...++|.......+. .++..+.++||||+. .+   .......+....
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~   82 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHMEE---KRAINRLMNKAA   82 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEE-ETTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEE-ECCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence            368999999999999999999998753222 223344433333233 367889999999985 21   111222233333


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|+++ ++..+...++.+..     ...|+++|+||+|...
T Consensus        83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred             HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence            456678899999999986 88777655554432     2358999999999875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.66  E-value=5.8e-16  Score=114.66  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=73.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++......   ..+++.......+.. ++  ..+.+|||||.....           .
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~   81 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-----------A   81 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------H
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCc---CCCccceEEEEEEEE-CCEEEEEEEEECCCCcccH-----------H
Confidence            458999999999999999999997764211   111122221222222 33  378899999976421           1


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+..
T Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  137 (187)
T 2a9k_A           82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED  137 (187)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGG
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            22233445799999999984422222 344455555432 12458999999999865

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.66  E-value=6.5e-16  Score=116.32  Aligned_cols=118  Identities=15%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++......  .....+.......+.. ++  ..+.+|||||....           ..
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~   93 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTGAFSER--QGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RT   93 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HH
Confidence            347999999999999999999987654211  1111112222222332 33  48899999996431           12


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~  148 (201)
T 2hup_A           94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSE  148 (201)
T ss_dssp             HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCcccc
Confidence            33455678899999999974432221 345555555432  2358999999999875

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.1e-15  Score=116.85  Aligned_cols=119  Identities=18%  Similarity=0.126  Sum_probs=74.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+|+|.+|+|||||+|+|++.......  ....+.......+.. ++  ..+.+|||||...+...         
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------   78 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAI---------   78 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhh---------
Confidence            34589999999999999999999987642221  122222222222332 34  47899999997654322         


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        79 --~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~  132 (223)
T 3cpj_B           79 --TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAH  132 (223)
T ss_dssp             --CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred             --HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence              2256678899999999985433222 344455544322  2358999999999864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.66  E-value=2e-15  Score=118.91  Aligned_cols=120  Identities=21%  Similarity=0.241  Sum_probs=79.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .++|+++|++|+|||||+|+|+|......  ..+++|.......+.+ .+..+.+|||||+.+.......  ..+...+ 
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~-   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVG--NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARNF-   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEE--ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHHH-
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHHh-
Confidence            47999999999999999999999865222  2344566555555554 6778999999999876543321  1122211 


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      .....+|++++|+|+++ . .....+...+.+. +   ..|+++|+||+|+.
T Consensus        77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~  122 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-E---VKNIILVLNKFDLL  122 (271)
T ss_dssp             HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-T---CCSEEEEEECHHHH
T ss_pred             hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-C---CCCEEEEEEChhcC
Confidence            12367899999999984 2 2223333333332 1   15899999999964

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.65  E-value=1.5e-15  Score=113.56  Aligned_cols=116  Identities=13%  Similarity=0.091  Sum_probs=72.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|+|||||+|++++......     ..|.......+.. .+..+.+|||||......           .
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~   89 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP-----------L   89 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------T
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence            4558999999999999999999987764221     1132233333333 678999999999865331           1


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++.+...  ...++......  ....|+++|+||+|+..
T Consensus        90 ~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~  144 (192)
T 2b6h_A           90 WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPN  144 (192)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence            2234457799999999985533222  22333333221  12458999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.65  E-value=5.1e-15  Score=118.93  Aligned_cols=130  Identities=15%  Similarity=0.187  Sum_probs=75.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCC---CCc---cceee---------------------------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---SSG---VTSTC---------------------------------   58 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~---~~~---~t~~~---------------------------------   58 (230)
                      ..++|+++|.+|+|||||+|+|+|....+....   ..+   .+...                                 
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI  102 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence            457999999999999999999999875322110   000   00000                                 


Q ss_pred             ------------------eeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeC-CCCC
Q 026970           59 ------------------EMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRF  117 (230)
Q Consensus        59 ------------------~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~-~~~~  117 (230)
                                        ....+....+..+.||||||+......  .......+......++..+|++++|+|+ +..+
T Consensus       103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~  182 (315)
T 1jwy_B          103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (315)
T ss_dssp             HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence                              000012224468999999999752210  0112234445555566788999999987 4344


Q ss_pred             CHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          118 SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       118 ~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ...+ ..+++.+..     ...|+++|+||+|+...
T Consensus       183 ~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~  213 (315)
T 1jwy_B          183 ANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK  213 (315)
T ss_dssp             TTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred             hhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence            4332 234433322     23589999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.65  E-value=1.8e-15  Score=112.00  Aligned_cols=116  Identities=16%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|++|||||||+++|++.......     .|.......+.. ++..+.+|||||....           ...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~   76 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY   76 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence            44589999999999999999999987532111     122222223333 5788999999996531           123


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++++|+|++++-+...  ...++...+..  ....|+++|+||+|+..
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  131 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLT  131 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence            3455678899999999985433222  22233333221  13458999999999876

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.65  E-value=1.2e-15  Score=115.99  Aligned_cols=119  Identities=14%  Similarity=0.083  Sum_probs=76.5

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      +.....+|+++|.+|||||||+++|++......  ..+  |....+. .+... ....+.+|||||.....         
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------   89 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPET--YVP--TVFENYTACLETEEQRVELSLWDTSGSPYYD---------   89 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSS--CCC--CSEEEEEEEEEC--CEEEEEEEEECCSGGGT---------
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCC--cCC--eeeeeEEEEEEECCEEEEEEEEECCCCHhHH---------
Confidence            334568999999999999999999998764211  111  2222221 12221 23578899999975432         


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ......+..+|++++|+|++++-+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        90 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  145 (214)
T 3q3j_B           90 --NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT  145 (214)
T ss_dssp             --TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred             --HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence              223356788999999999985543333  455566665432   358999999999875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.65  E-value=1.3e-15  Score=110.33  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=71.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||+|++++......   ..+.+.......... ++  ..+.+|||||.....           ..
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~   67 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE---CDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS-----------AM   67 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC-----------HH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccc---cCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh-----------HH
Confidence            36899999999999999999997754221   111111111122222 33  457899999976532           11


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+..
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred             HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhh
Confidence            1223345689999999974422222 344444544432 12358999999999875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=1.3e-15  Score=113.85  Aligned_cols=117  Identities=17%  Similarity=0.074  Sum_probs=76.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+++|++......   ..+++.......+.. ++  ..+.+|||||...+..          
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~----------   81 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR----------   81 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCS---CCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH----------
Confidence            3457999999999999999999997753211   111111111112222 33  5788999999876442          


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       .....+..+|++++|+|++++.+...  ..++..+.+...   ..|+++|+||+|+..
T Consensus        82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  136 (194)
T 2atx_A           82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD  136 (194)
T ss_dssp             -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred             -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence             22356778999999999985432222  245555655432   358999999999876

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.65  E-value=1.1e-15  Score=114.78  Aligned_cols=128  Identities=16%  Similarity=0.124  Sum_probs=75.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|++|||||||+|++++.......     .|.......+.. ++..+.+|||||......           .
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~   85 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQARR-----------V   85 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-----------G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-----------H
Confidence            34579999999999999999999987642111     122222233333 568999999999764332           2


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC-ChhhHHHHhc
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG  162 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~  162 (230)
                      ...++..+|++++|+|++++-+... ..++..+.+.. .....|+++|+||+|+... ..+.+.+++.
T Consensus        86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  152 (198)
T 1f6b_A           86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFG  152 (198)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence            2345678899999999985433222 22333232211 1234589999999998642 1234444443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.65  E-value=3.3e-15  Score=116.70  Aligned_cols=120  Identities=22%  Similarity=0.263  Sum_probs=80.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|+|||||+|+|+|.......  .+++|.......+.. .+..+.+|||||.........  .+.+...+.
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~   79 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL   79 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence            478999999999999999999998754322  345666655555543 678999999999987654321  122222211


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      . ...+|++++|+|+++ +. ....+...+.+.     ..|+++|+||+|+..
T Consensus        80 ~-~~~~d~ii~V~D~t~-~~-~~~~~~~~l~~~-----~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           80 L-KGDADLVILVADSVN-PE-QSLYLLLEILEM-----EKKVILAMTAIDEAK  124 (258)
T ss_dssp             H-HSCCSEEEEEEETTS-CH-HHHHHHHHHHTT-----TCCEEEEEECHHHHH
T ss_pred             h-hcCCCEEEEEeCCCc-hh-hHHHHHHHHHhc-----CCCEEEEEECcCCCC
Confidence            1 157899999999984 32 222333333332     358999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=2.8e-16  Score=117.23  Aligned_cols=121  Identities=12%  Similarity=0.048  Sum_probs=76.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      +...+|+|+|.+|+|||||+|+|++...........+.+......... .....+.+|||||..           .+...
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~-----------~~~~~   88 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQE-----------RYRTI   88 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHH-----------HCHHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChH-----------HHHHH
Confidence            345799999999999999999999765321111111222222222121 245689999999942           22344


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++-+.. ...++..+.....  ...|+++|+||+|+..
T Consensus        89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~  142 (191)
T 3dz8_A           89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEE  142 (191)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence            455677889999999998532222 1345555555322  2458999999999864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.65  E-value=6.8e-16  Score=116.46  Aligned_cols=118  Identities=19%  Similarity=0.111  Sum_probs=74.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ..+..+|+++|.+|+|||||++++++......   ..+++.......+.. ++.  .+.+|||||...+.          
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~----------   92 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD----------   92 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT----------
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC---cCCeecceeEEEEEE-CCEEEEEEEEECCCchhhH----------
Confidence            34568999999999999999999997654211   112222222222222 333  55699999985433          


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ......+..+|++++|+|++++.+....  .++..+....   ...|+++|+||+|+..
T Consensus        93 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~  148 (204)
T 4gzl_A           93 -RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD  148 (204)
T ss_dssp             -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHT
T ss_pred             -HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhcc
Confidence             2233567789999999999854433332  4555555543   2358999999999876

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.65  E-value=5.4e-16  Score=116.64  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++......  .....+.......+.. ++  ..+.+|||||.....           
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~-----------   88 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFR-----------   88 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHS-----------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHH-----------
Confidence            3458999999999999999999998764222  1122222222222322 33  578999999953221           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus        89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~  144 (200)
T 2o52_A           89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDP  144 (200)
T ss_dssp             CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGG
T ss_pred             HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccc
Confidence            122245567899999999985432222 344444444322  2358999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.65  E-value=2.9e-15  Score=109.16  Aligned_cols=120  Identities=18%  Similarity=0.279  Sum_probs=74.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|++|+|||||+|+|++......  ..++.|.......+.. ++..+.+|||||...+....  ..+.+.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence            37899999999999999999998754322  1223344433333443 56889999999988654322  1122222111


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      . ..++|++++|+|+++ . .....++..+.+.     ..|+++|+||+|+..
T Consensus        78 ~-~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~  122 (165)
T 2wji_A           78 I-NEKPDLVVNIVDATA-L-ERNLYLTLQLMEM-----GANLLLALNKMDLAK  122 (165)
T ss_dssp             H-HHCCSEEEEEEETTC-H-HHHHHHHHHHHHT-----TCCEEEEEECHHHHH
T ss_pred             h-cCCCCEEEEEecCCc-h-hHhHHHHHHHHhc-----CCCEEEEEEchHhcc
Confidence            1 126799999999973 2 1223344444331     358999999999753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.65  E-value=1.6e-15  Score=114.27  Aligned_cols=121  Identities=19%  Similarity=0.103  Sum_probs=55.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC--ccccccCCCCccceeeeeEEEEeeC---CeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~--~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      ...+|+++|.+|+|||||+|+|++.  ..  .....+.+........+...+   ...+.+|||||..           .
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~   85 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKF--LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-----------L   85 (208)
T ss_dssp             EEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTH-----------H
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcc--cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-----------H
Confidence            4579999999999999999999987  32  111111111122222333322   3579999999963           2


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~  151 (230)
                      +.......+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+..
T Consensus        86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           86 YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            33445567788999999999985433222 3455555554220 12458999999999875

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=2.7e-16  Score=117.35  Aligned_cols=121  Identities=16%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....+|+++|.+|+|||||+|+|++.......  ....+.......+... ....+.+|||||.......          
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------   80 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL----------   80 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh----------
Confidence            34589999999999999999999987642221  1222222222222221 2357899999997643321          


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ....+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+..
T Consensus        81 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~~  135 (195)
T 1x3s_A           81 -TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKEN  135 (195)
T ss_dssp             -HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSSS
T ss_pred             -hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEECCcCcc
Confidence             2244567899999999974422221 23333333321 112458999999999854

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.64  E-value=1.5e-15  Score=113.05  Aligned_cols=119  Identities=19%  Similarity=0.188  Sum_probs=70.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      -...+|+++|.+|+|||||+|+|++......   ..+.+.......+.. ++  ..+.+|||||.....           
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------   83 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS-----------   83 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC----------------
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccc---cCCccceEEEEEEEE-CCEEEEEEEEECCChHHHH-----------
Confidence            3457999999999999999999997754211   111122211122222 33  358899999965322           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+..
T Consensus        84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred             HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc
Confidence            233356678899999999975433222 344444544332 12358999999999875

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.64  E-value=1.7e-15  Score=113.20  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=76.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|++++......    ...|....+......++.  .+.+|||||.....           
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------   85 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTA----YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-----------   85 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCc----cCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-----------
Confidence            4458999999999999999999998764211    111222222222222443  56899999965432           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|++++.+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK  141 (194)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred             HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence            223356778999999999985433333  345555554322   358999999999874

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.64  E-value=2.1e-15  Score=113.44  Aligned_cols=117  Identities=19%  Similarity=0.143  Sum_probs=75.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|++++......  ..+.++.... ..+.. ++  ..+.+|||||.....           
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~-----------   87 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYD-----------   87 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEE-EEEEE-CCEEEEEEEEECCCchhHH-----------
Confidence            4458999999999999999999998764221  1111111111 11222 33  478899999975432           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|++++.+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  143 (201)
T 2gco_A           88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQ  143 (201)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTT
T ss_pred             HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhc
Confidence            222346678899999999985322222  345555555322   358999999999876

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.64  E-value=1.5e-15  Score=112.64  Aligned_cols=117  Identities=16%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++......  ..  .|....+ ..+... ....+.+|||||...+.           
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------   69 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN--YV--PTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------   69 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS--CC--CCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-----------
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC--CC--CccceeEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence            3458999999999999999999998654211  11  1222111 122221 23478999999975432           


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|++++.+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  125 (184)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred             hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence            122346678999999999985433222  234455554422   358999999999875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.64  E-value=3.5e-16  Score=131.45  Aligned_cols=121  Identities=23%  Similarity=0.245  Sum_probs=75.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|++|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.++....+   ..-.....
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~~  298 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERSR  298 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHHh
Confidence            468999999999999999999987542221 2344555444333443 788999999999865321111   11112223


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|++++.+..+..+++.+..       .|+++|+||+|+..
T Consensus       299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~  344 (462)
T 3geh_A          299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVE  344 (462)
T ss_dssp             CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred             hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence            45678999999999987888777655554432       38999999999876

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.64  E-value=1.4e-15  Score=112.46  Aligned_cols=116  Identities=19%  Similarity=0.086  Sum_probs=74.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||++++++.......   .+++.......... ++  ..+.+|||||.....           .
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~   68 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------R   68 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSC---CCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------T
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCc---CCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH-----------H
Confidence            3479999999999999999999976542111   11111111112222 33  356799999986432           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+....  .++..+.....   ..|+++|+||+|+..
T Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  123 (186)
T 1mh1_A           69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  123 (186)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred             HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence            223456788999999999854333332  35555555432   458999999999875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.63  E-value=2e-15  Score=114.78  Aligned_cols=116  Identities=21%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++......  .. +++.......+.. ++  ..+.+|||||.....           .
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~-~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~-----------~   97 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPES--YT-PTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYD-----------R   97 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC---------C-CCCCEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCC--CC-CccceeEEEEEEE-CCEEEEEEEEECCCchhhh-----------H
Confidence            458999999999999999999998764211  11 1111111122222 33  378899999965422           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  152 (214)
T 2j1l_A           98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK  152 (214)
T ss_dssp             -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence            23345678899999999985433222  134555554322   358999999999876

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.63  E-value=2e-14  Score=117.48  Aligned_cols=127  Identities=19%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|||||||+|.|++......  .....|.......... .+..+.++||||+.+..........  ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~  239 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQA  239 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHH
Confidence            3457999999999999999999998864222  2234455555444443 5678999999999764322111111  122


Q ss_pred             HHhhcCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +......+|++++|+|+++..  +... ..++..+...++   ..|+++|+||+|+..
T Consensus       240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~  294 (357)
T 2e87_A          240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVAD  294 (357)
T ss_dssp             HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCC
T ss_pred             HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCC
Confidence            223345679999999987443  4333 556666666543   358999999999876

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.63  E-value=1.8e-15  Score=113.23  Aligned_cols=118  Identities=20%  Similarity=0.158  Sum_probs=73.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++......  ..+  |....+. .+... ....+.+|||||...     .       
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~-------   89 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDP--TLESTYRHQATIDDEVVSMEILDTAGQED-----T-------   89 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCT--TCCEEEEEEEEETTEEEEEEEEECCCCCC-----C-------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCC--CCCceEEEEEEECCEEEEEEEEECCCCCc-----c-------
Confidence            4568999999999999999999998754221  111  2211221 12221 234688999999865     1       


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+..
T Consensus        90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~  146 (196)
T 2atv_A           90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH  146 (196)
T ss_dssp             HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred             cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc
Confidence            112233345689999999984332222 344555555322 22458999999999865

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.63  E-value=8.5e-16  Score=127.57  Aligned_cols=128  Identities=20%  Similarity=0.186  Sum_probs=84.1

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      +....++|+++|++|+|||||+|+|++....... ...++|.......+.......+.+|||||+.++..........  
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~--  106 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK--  106 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH--
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH--
Confidence            3455689999999999999999999988753222 2445566666665655344489999999998765432221122  


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (230)
                        ....+..+|++++|+|+  ........++..+.+.     ..|+++|+||+|+.....
T Consensus       107 --~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A          107 --ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKA  157 (423)
T ss_dssp             --HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCC
T ss_pred             --HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccH
Confidence              22345678999999998  4566677777777764     348999999999986543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.63  E-value=2.6e-15  Score=113.46  Aligned_cols=116  Identities=19%  Similarity=0.130  Sum_probs=73.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||+|+|++......  ..+. +.......+.. ++  ..+.+|||||......           
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t-~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------   88 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPT-VFENYVADIEV-DGKQVELALWDTAGQEDYDR-----------   88 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTT-----------
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCc-ccceEEEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence            347999999999999999999998764211  1111 11111112222 33  4788999999865432           


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  143 (207)
T 2fv8_A           89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRS  143 (207)
T ss_dssp             TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGG
T ss_pred             HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhc
Confidence            22245678899999999984322222  345555555322   358999999999876

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.63  E-value=1.3e-15  Score=111.11  Aligned_cols=119  Identities=23%  Similarity=0.116  Sum_probs=66.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||+|++++.......  ....+.......+.. ++  ..+.+|||||.......          .
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----------~   68 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW----------L   68 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC-----------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh----------h
Confidence            368999999999999999999876542221  122222222222332 33  46789999998653210          1


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+..
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~  123 (169)
T 3q85_A           69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR  123 (169)
T ss_dssp             -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGG
T ss_pred             hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhh
Confidence            1122334699999999985322211 334444444322 12458999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.63  E-value=2.2e-15  Score=113.86  Aligned_cols=118  Identities=16%  Similarity=0.095  Sum_probs=75.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      .....+|+++|.+|+|||||+|+|++......  .  ..|....+. .+... ....+.+|||||...+.          
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------   90 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN--Y--VPTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------   90 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS--C--CCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT----------
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC--c--CCccceeEEEEEEECCEEEEEEEEeCCCcHhhh----------
Confidence            34568999999999999999999998754211  1  112222221 22221 23578999999975432          


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ......+..+|++++|+|++++.+...  ..++..+.+...   ..|+++|+||+|+..
T Consensus        91 -~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           91 -NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  146 (205)
T ss_dssp             -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred             -HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence             122346678999999999985433222  244455555422   358999999999874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.63  E-value=2.1e-15  Score=113.06  Aligned_cols=124  Identities=23%  Similarity=0.133  Sum_probs=72.4

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHH
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGK   91 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~   91 (230)
                      .+.....+|+++|.+|||||||+|+|++........  .+++.......+.. ++  ..+.+|||||.....       .
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-------~   87 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG-------G   87 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--TTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG-------H
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--CCcccceEEEEEEE-CCEEEEEEEEecCCCccch-------h
Confidence            334566899999999999999999998754321111  11222222222222 33  367789999975421       1


Q ss_pred             HHHHHHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+.   ..++..+|++++|+|++++.+.. ...++..+..... ....|+++|+||+|+..
T Consensus        88 ~~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  144 (195)
T 3cbq_A           88 WLR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR  144 (195)
T ss_dssp             HHH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTT
T ss_pred             hhH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccc
Confidence            111   12344679999999998543222 1344444444321 12458999999999875

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.63  E-value=1.7e-16  Score=119.23  Aligned_cols=119  Identities=20%  Similarity=0.189  Sum_probs=72.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||+|+|++.......  ....+.......+.. ++  ..+.+|||||........        
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------   99 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTIT--------   99 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCS--------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHH--------
Confidence            44589999999999999999999987542211  122222333333333 34  478999999976544222        


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                         ...+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+..
T Consensus       100 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~  152 (199)
T 3l0i_B          100 ---SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTT  152 (199)
T ss_dssp             ---CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC-
T ss_pred             ---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCc
Confidence               245678899999999985433222 233333333211  2458999999999875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.63  E-value=9.5e-14  Score=110.63  Aligned_cols=131  Identities=14%  Similarity=0.116  Sum_probs=76.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccC---CC-Cc----------------------ccee-------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA---SS-SG----------------------VTST-------------   57 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~---~~-~~----------------------~t~~-------------   57 (230)
                      ...++|+++|.+|||||||+|+|+|....+...   .. ++                      .|..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            345899999999999999999999987532110   00 10                      1100             


Q ss_pred             ----------eeeEEEEeeCCeEEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhhcCCccEEE-EEEeCCCCCCHHHH-H
Q 026970           58 ----------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEE-A  123 (230)
Q Consensus        58 ----------~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~d~~~~~~~~~~-~  123 (230)
                                .....+.......+.||||||+.....  ..+.....+......++..++.++ +|+|+++.++..+. .
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      000011111246899999999875321  012222233344444555666555 78999766655442 2


Q ss_pred             HHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          124 ALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       124 ~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      +++.+..     ...|+++|+||+|+..+
T Consensus       184 ~~~~~~~-----~~~~~i~V~NK~Dl~~~  207 (299)
T 2aka_B          184 IAKEVDP-----QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHCT-----TCSSEEEEEECGGGSCT
T ss_pred             HHHHhCC-----CCCeEEEEEEccccCCC
Confidence            3333221     23589999999999863

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.62  E-value=4.9e-15  Score=124.31  Aligned_cols=127  Identities=20%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH--HH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI--VK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~--~~   95 (230)
                      ...+|+++|++|||||||+|+|+|....... ...++|.......+.+ ++..+.+|||||+........+....+  ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999998643222 2344555544444544 778899999999853221110000000  00


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      . ...+..+|++++|+|+.+..+..+..+...+...     ..++++|+||+|+...
T Consensus       257 ~-~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~~  307 (439)
T 1mky_A          257 V-VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVH  307 (439)
T ss_dssp             H-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTT
T ss_pred             H-HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCCc
Confidence            1 1223456899999999877777765555544432     2489999999998863

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.62  E-value=6.6e-16  Score=117.89  Aligned_cols=121  Identities=20%  Similarity=0.137  Sum_probs=75.7

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .....+|+++|.+|||||||+|+++............+.+......... ..+..+.+|||||.........        
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~--------   82 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGLRD--------   82 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCCCH--------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHHHH--------
Confidence            3455899999999999999999965433211111222333333222221 1335789999999754432222        


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                         ..+..+|++++|+|++++.+... ..++..+.+...   ..|+++|+||+|+..
T Consensus        83 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  133 (221)
T 3gj0_A           83 ---GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD  133 (221)
T ss_dssp             ---HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred             ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence               34567899999999985433222 345555555432   358999999999875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.62  E-value=5.7e-15  Score=120.90  Aligned_cols=130  Identities=18%  Similarity=0.184  Sum_probs=80.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCcccee----------------------------------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST----------------------------------------   57 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~----------------------------------------   57 (230)
                      .-+.|+|+|.+|||||||+|+|+|....+.+..  .+|..                                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~--~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  110 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE  110 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS--SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC--cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence            446999999999999999999999765333211  11100                                        


Q ss_pred             --------------eeeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH
Q 026970           58 --------------CEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  121 (230)
Q Consensus        58 --------------~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~  121 (230)
                                    .....+.......+.+|||||+......  .......+......++..+|++++|+++.+ .....
T Consensus       111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~-~~~~~  189 (360)
T 3t34_A          111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN-QDLAT  189 (360)
T ss_dssp             HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETT-SCGGG
T ss_pred             HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeeccc-CCcCC
Confidence                          0011111123457899999999875321  223444555666667788999999997642 22222


Q ss_pred             HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          122 EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       122 ~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ..++..+... . ....++++|+||+|+..+
T Consensus       190 ~~~~~l~~~~-~-~~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          190 SDAIKISREV-D-PSGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             CHHHHHHHHS-C-TTCTTEEEEEECGGGCCT
T ss_pred             HHHHHHHHHh-c-ccCCCEEEEEeCCccCCC
Confidence            3344444443 2 123479999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.62  E-value=3.6e-15  Score=113.47  Aligned_cols=122  Identities=10%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....++|+++|++|+|||||+|+|++......... ...+....      .....+.++||||.....       ..+..
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~~------~~~~~~~l~Dt~G~~~~~-------~~~~~   74 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAAD------YDGSGVTLVDFPGHVKLR-------YKLSD   74 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEETT------GGGSSCEEEECCCCGGGT-------HHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEEE------eeCceEEEEECCCcHHHH-------HHHHH
Confidence            34568999999999999999999998764221111 11111111      144578999999986532       12223


Q ss_pred             HHHhhcCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVR-S--RFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~-~--~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~~  152 (230)
                      ++......+|++++|+|++ +  .+... ..++..+.....  .....|+++|+||+|+...
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            3333333478999999997 3  33322 233333332211  1124589999999999863

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.8e-15  Score=121.50  Aligned_cols=123  Identities=15%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+|+|.|+||||||+|+|++.....  ...+++|..+....+.+ .+.++.|+||||+.............+...+.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            3699999999999999999999987432  33456777777766665 78899999999998654444445555555544


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccceEEEEEeCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-IFDYMIVVFTGGDEL  150 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivv~tk~D~~  150 (230)
                          .+|++++|+|+.++.  .+...+..-...++.. ...|.++++||.|..
T Consensus       149 ----~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          149 ----TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             ----HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             ----hcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence                458999999997432  2233333222333432 345788999999963

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.62  E-value=5.3e-16  Score=125.62  Aligned_cols=126  Identities=19%  Similarity=0.146  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+|+|.+|||||||+|+|++.....  .....+|.......+...++..+.++||||+.+.......+...+.+.+  
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--  234 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--  234 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH--
Confidence            368999999999999999999875422  2233455555555555534478999999997542222222334444333  


Q ss_pred             hcCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRS---RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ..++++++|+|+++   +-...+ ..+...+..........|+++|+||+|+..
T Consensus       235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~  288 (342)
T 1lnz_A          235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE  288 (342)
T ss_dssp             --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred             --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence              34589999999974   222222 344455555321123568999999999875

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=1.1e-14  Score=108.14  Aligned_cols=121  Identities=17%  Similarity=0.252  Sum_probs=76.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|++|||||||+|+|++...+...  .+++|.......+.. ++..+.+|||||...+.....  ...+....
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~   80 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY   80 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence            4589999999999999999999987643322  234455444444444 678999999999886543211  11222211


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ... ..+|++++|+|..+ + .....++..+..     ...|+++|+||+|+..
T Consensus        81 ~~~-~~~~~~i~v~d~~~-~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~~  126 (188)
T 2wjg_A           81 IIN-EKPDLVVNIVDATA-L-ERNLYLTLQLME-----MGANLLLALNKMDLAK  126 (188)
T ss_dssp             HHH-HCCSEEEEEEEGGG-H-HHHHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred             Hhc-cCCCEEEEEecchh-H-HHHHHHHHHHHh-----cCCCEEEEEEhhhccc
Confidence            111 24789999999873 2 122233333322     2358999999999753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.61  E-value=3.5e-15  Score=109.76  Aligned_cols=111  Identities=21%  Similarity=0.160  Sum_probs=71.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeee-eEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ...+|+++|.+|||||||+|++++.....  . .+  |.... ...+.. ++  ..+.+|||||...     .       
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~-~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~-------   67 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--L-EK--TESEQYKKEMLV-DGQTHLVLIREEAGAPD-----A-------   67 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC--C-SS--CSSSEEEEEEEE-TTEEEEEEEEECSSSCC-----H-------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC--c-CC--CcceeEEEEEEE-CCEEEEEEEEECCCCch-----h-------
Confidence            45899999999999999999999876522  1 11  21111 122222 33  4678999999753     1       


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDEL  150 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~  150 (230)
                          ..+.++|++++|+|++++.+... ..+++++...... ....|+++|+||+|+.
T Consensus        68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence                22345799999999985433333 3344445554321 1245899999999984

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.61  E-value=8.2e-15  Score=115.22  Aligned_cols=119  Identities=17%  Similarity=0.185  Sum_probs=77.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|+|||||+|+|+|...+...  .+++|.......+..  +..+.+|||||.........  .+.+...+.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence            478999999999999999999997643332  235555544443332  66899999999987543221  122222221


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      . ...+|++++|+|+++ . .....+...+.+     ...|+++|+||+|+..
T Consensus        77 ~-~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           77 L-SQRADSILNVVDATN-L-ERNLYLTTQLIE-----TGIPVTIALNMIDVLD  121 (272)
T ss_dssp             H-TTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred             h-cCCCCEEEEEecCCc-h-HhHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence            1 146899999999973 2 222333334433     1358999999999753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.61  E-value=3.1e-15  Score=113.28  Aligned_cols=117  Identities=19%  Similarity=0.113  Sum_probs=75.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||++.+++......   ..+++.......+.. ++  ..+.+|||||...+..          
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------   72 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR----------   72 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSS---CCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCcc---CCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence            3458999999999999999999997654211   111111111112222 33  4789999999876432          


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       .....+..+|++++|+|++++-+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  127 (212)
T 2j0v_A           73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD  127 (212)
T ss_dssp             ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred             -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence             22346778999999999985433222  245555555432   358999999999865

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.61  E-value=3.9e-15  Score=127.07  Aligned_cols=119  Identities=15%  Similarity=0.195  Sum_probs=84.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccc----------------cc----CCCCccceeeeeEEEEeeCCeEEEEEeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTP   77 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (230)
                      ..++|+++|++|+|||||+|+|++.....                ..    ....++|.......+.+ .+..+.|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence            45899999999999999999997221100                00    00123444444454554 67899999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      |+.++.           .....++..+|++++|+|+.+.........+..+...     ..|+++|+||+|+...+
T Consensus        91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCSC
T ss_pred             CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcccc
Confidence            998754           2233456678999999999888887777777655543     24899999999997543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.60  E-value=2e-15  Score=129.59  Aligned_cols=134  Identities=20%  Similarity=0.316  Sum_probs=79.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceee-eeEE---------------------------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQR---------------------------------   62 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~-~~~~---------------------------------   62 (230)
                      ...++|+|+|.+|+|||||+|+|+|........+..+.|... .+..                                 
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            355899999999999999999999987531111111222111 0000                                 


Q ss_pred             ---EEeeCC---eEEEEEeCCCCCCCCCCcHHHHHH--HHHHHHhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhc
Q 026970           63 ---TVLKDG---QVVNVIDTPGLFDFSAGSEFVGKE--IVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFG  133 (230)
Q Consensus        63 ---~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~  133 (230)
                         +.. .+   ..+.||||||+.+....  .....  +.......+..+|++++|+|+++ .....+..+++.+...  
T Consensus       143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--  217 (550)
T 2qpt_A          143 FMCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--  217 (550)
T ss_dssp             EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred             ceEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence               000 00   36899999999752210  00000  22333334456799999999975 3566666666554432  


Q ss_pred             ccccceEEEEEeCCCCCCCChhhHHHH
Q 026970          134 KKIFDYMIVVFTGGDELEDNDETLEDY  160 (230)
Q Consensus       134 ~~~~~~~ivv~tk~D~~~~~~~~~~~~  160 (230)
                         ..++++|+||+|+..  ...+.+.
T Consensus       218 ---~~pvilVlNK~Dl~~--~~el~~~  239 (550)
T 2qpt_A          218 ---EDKIRVVLNKADMVE--TQQLMRV  239 (550)
T ss_dssp             ---GGGEEEEEECGGGSC--HHHHHHH
T ss_pred             ---CCCEEEEEECCCccC--HHHHHHH
Confidence               247999999999986  4444443

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.60  E-value=6.9e-16  Score=130.20  Aligned_cols=119  Identities=22%  Similarity=0.281  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC-CCCCCcHHH-HHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFV-GKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~-~~~~~~~~   97 (230)
                      .+|+++|.+|||||||+|+|++...... ...+++|.+.....+.. ++..+.+|||||+. ++....+.. .....   
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~---  318 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTL---  318 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHH---
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHH---
Confidence            7899999999999999999998753222 22345566555555554 78899999999997 543222111 01111   


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ..+..+|++|+|+|+++..+..+..+++.+    .   ..|+++|+||+|+..
T Consensus       319 -~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~  364 (482)
T 1xzp_A          319 -QEIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE  364 (482)
T ss_dssp             -HHHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred             -HHhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence             233456999999999877776665554332    2   348999999999875

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.60  E-value=1.1e-14  Score=110.60  Aligned_cols=117  Identities=14%  Similarity=0.051  Sum_probs=73.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeee--eEEEEeeC-----------CeEEEEEeCCCCCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD-----------GQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~liDtPG~~~~~~   84 (230)
                      ...+|+|+|.+|+|||||+|+|++......    ...|....  ...+....           ...+.||||||..    
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----   95 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE----   95 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH----
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH----
Confidence            447999999999999999999998754211    11122211  11222212           3579999999942    


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                             .+.......+..+|++++|+|+++..+.  .....++.......  ...|+++|+||+|+..
T Consensus        96 -------~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~  155 (217)
T 2f7s_A           96 -------RFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPD  155 (217)
T ss_dssp             -------HHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             -------hHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence                   2334445566788999999999743221  22223333322211  3458999999999865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.60  E-value=2e-15  Score=111.42  Aligned_cols=117  Identities=19%  Similarity=0.088  Sum_probs=69.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|+|||||++++++......   ..+ |....+. .+.. .....+.+|||||......          
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~---~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------   71 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD---YVP-TVFDNFSANVVVNGATVNLGLWDTAGQEDYNR----------   71 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTTT----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCC-eeeeeEEEEEEECCEEEEEEEEECCCChhhhh----------
Confidence            3458999999999999999999997653211   111 1111111 1111 1234567999999765432          


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       .....+..+|++++|+|++++.+....  .++..+.....   ..|+++|+||+|+..
T Consensus        72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  126 (182)
T 3bwd_D           72 -LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD  126 (182)
T ss_dssp             -TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred             -hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence             223556788999999999754333222  35555555432   358999999999865

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.60  E-value=1.4e-14  Score=107.74  Aligned_cols=118  Identities=25%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ....+|+++|.+|||||||+|++++.... ..   ...|....+. .... ++  ..+.+|||||...+..-        
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~--------   85 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFI-SE---YDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC--------   85 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCC-SC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT--------
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCC-cc---cCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH--------
Confidence            45589999999999999999999977532 11   1112222221 1222 33  46789999997654321        


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~  151 (230)
                          ...+..+|++++|+|++++-+... ..++..+...... ....|+++|+||+|+..
T Consensus        86 ----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  141 (187)
T 3c5c_A           86 ----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ  141 (187)
T ss_dssp             ----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred             ----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence                124467899999999985433222 3344545443211 12458999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.59  E-value=3.2e-15  Score=110.94  Aligned_cols=114  Identities=21%  Similarity=0.146  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      +.....+|+++|.+|||||||+|++++.......    ..|.......+.. ++  ..+.+|||||...+.         
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~---------   81 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ---------   81 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEEEEEEEE-TTEEEEEEEEECSSSCCHH---------
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceEEEEEEE-CCEEEEEEEEECCCChhhh---------
Confidence            3455689999999999999999999877542211    1122211122232 44  356789999975421         


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                             .+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+.
T Consensus        82 -------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           82 -------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             -------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCB
T ss_pred             -------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccc
Confidence                   2335689999999985433333 34444444431 12345899999999984

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.6e-14  Score=116.76  Aligned_cols=115  Identities=14%  Similarity=0.086  Sum_probs=74.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+|+|.+|+|||||+|+|++......     ..|....+..+.. .+..+.||||||...+.           ...
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLW  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------CSH
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHH
Confidence            346899999999999999999998764221     1244444444443 67899999999965433           222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      ..++..+|++++|+|++++-+...  ...++.......  ...|+++|+||+|+..
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~  280 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPN  280 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             HHHhccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence            345567899999999975544332  112222222211  2458999999999876

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.59  E-value=9.6e-15  Score=123.90  Aligned_cols=119  Identities=16%  Similarity=0.238  Sum_probs=79.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCccceeeeeEEEEeeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDG   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~   68 (230)
                      ...+|+++|++|+|||||+|+|++....                             .......++|.......+.. .+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~  110 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR  110 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence            4589999999999999999999765210                             00011235666666665554 67


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEE
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI  141 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i  141 (230)
                      ..+.||||||+.++           ...+...+..+|++++|+|+++.       +.......+..+.. ++   .++++
T Consensus       111 ~~~~iiDTPG~~~f-----------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~---~~~iI  175 (483)
T 3p26_A          111 ANFTIVDAPGHRDF-----------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHNLI  175 (483)
T ss_dssp             CEEEEECCCCCGGG-----------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT---CCCEE
T ss_pred             ceEEEEECCCcHHH-----------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC---CCcEE
Confidence            89999999998542           24444556788999999999854       33344444444333 23   23699


Q ss_pred             EEEeCCCCCCC
Q 026970          142 VVFTGGDELED  152 (230)
Q Consensus       142 vv~tk~D~~~~  152 (230)
                      +|+||+|+...
T Consensus       176 vviNK~Dl~~~  186 (483)
T 3p26_A          176 IAMNKMDNVDW  186 (483)
T ss_dssp             EEEECGGGGTT
T ss_pred             EEEECcCcccc
Confidence            99999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.59  E-value=6.9e-15  Score=109.21  Aligned_cols=124  Identities=18%  Similarity=0.170  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|.+|+|||||+|++++......  ..+++|......  .. .  .+.++||||+.....-.......+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~t~~~~~~--~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG--KRPGVTRKIIEI--EW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSS--SSTTCTTSCEEE--EE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccC--CCCCccceeEEE--ec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            5899999999999999999998864221  223444433322  22 2  688999999865443222222333332222


Q ss_pred             h----cCCccEEEEEEeCCCCCCHHHHHHHHH--------HHHHhcccccceEEEEEeCCCCCCC
Q 026970          100 A----KDGIHAVLVVFSVRSRFSQEEEAALHS--------LQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       100 ~----~~~~~~il~v~d~~~~~~~~~~~~l~~--------l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      +    ...++++++|+|.. .+......+...        +..... ....|+++|+||+|+...
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  137 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIKN  137 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCSC
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccCc
Confidence            2    34456777777765 221111122110        111111 123589999999998763

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.58  E-value=2.6e-16  Score=133.97  Aligned_cols=116  Identities=16%  Similarity=0.252  Sum_probs=86.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      +++|+++|++|+|||||+++|++......  ..+++|.....+.+....+..+.||||||+.++.....           
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~-----------   70 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA-----------   70 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-----------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-----------
Confidence            47899999999999999999998765322  34556666655555544567899999999876553322           


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ..+..+|++++|+|+++.........+..+...     ..|+++|+||+|+...
T Consensus        71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~~  119 (537)
T 3izy_P           71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAEA  119 (537)
T ss_dssp             SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTTT
T ss_pred             HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEeccccccc
Confidence            456678999999999888887777666655542     2479999999998753

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.58  E-value=2.9e-14  Score=119.38  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=80.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------------------------CCCCccceeeeeEEEEe
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRTVL   65 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~   65 (230)
                      ....+|+++|++++|||||+|+|++.......                               ....++|....+..+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            34589999999999999999999865310000                               00124455544444443


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (230)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t  145 (230)
                       .+..+.||||||+.++           ...+...+..+|++++|+|+++.........+..+.. .+   .+++++|+|
T Consensus       102 -~~~~~~iiDtpGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~---~~~iIvviN  165 (434)
T 1zun_B          102 -AKRKFIIADTPGHEQY-----------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LG---IKHIVVAIN  165 (434)
T ss_dssp             -SSEEEEEEECCCSGGG-----------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCEEEEEEE
T ss_pred             -CCceEEEEECCChHHH-----------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEE
Confidence             5678999999997542           1223345578899999999987777766666655544 23   236999999


Q ss_pred             CCCCCC
Q 026970          146 GGDELE  151 (230)
Q Consensus       146 k~D~~~  151 (230)
                      |+|+..
T Consensus       166 K~Dl~~  171 (434)
T 1zun_B          166 KMDLNG  171 (434)
T ss_dssp             CTTTTT
T ss_pred             cCcCCc
Confidence            999875

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.58  E-value=2.2e-14  Score=121.44  Aligned_cols=117  Identities=19%  Similarity=0.285  Sum_probs=80.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc----cc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA----FK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~----~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      ..++|+++|+.++|||||+|+|++...    .. ......++|....+..+.+ ++..+.+|||||+.           .
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~   85 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------D   85 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------H
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------H
Confidence            458999999999999999999998761    00 1122345666666555554 67899999999963           2


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +...+...+..+|++++|+|+++.........+..+.. .+    .|.++|+||+|+..
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~  139 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAG  139 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSC
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCccc
Confidence            33445566778999999999987777777777665544 33    35799999999875

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.58  E-value=2.8e-14  Score=119.56  Aligned_cols=122  Identities=19%  Similarity=0.230  Sum_probs=82.3

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCccceeeeeEEEE
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTV   64 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~   64 (230)
                      .+.....+|+++|++++|||||+|+|++......                             .....++|....+..+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            3445668999999999999999999965432100                             01124567776666665


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhccccc
Q 026970           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIF  137 (230)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~  137 (230)
                      . .+..+.||||||+.+           +...+...+..+|++++|+|+++...       ......+..+.. .+   .
T Consensus        92 ~-~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~---v  155 (439)
T 3j2k_7           92 T-EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AG---V  155 (439)
T ss_pred             c-CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cC---C
Confidence            4 677999999999743           23344445567899999999986543       234444444433 23   2


Q ss_pred             ceEEEEEeCCCCCC
Q 026970          138 DYMIVVFTGGDELE  151 (230)
Q Consensus       138 ~~~ivv~tk~D~~~  151 (230)
                      +++++|+||+|+..
T Consensus       156 ~~iIvviNK~Dl~~  169 (439)
T 3j2k_7          156 KHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEeecCCCcc
Confidence            34999999999864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.57  E-value=3.4e-14  Score=116.05  Aligned_cols=124  Identities=15%  Similarity=0.153  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      +.|+++|++|+|||||+|+|++......  ...+.|.......+.+ ++..+.++||||+....  .....+.+...+. 
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~-  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI--PPQIVDAFFVTLS-  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC--CGGGHHHHHHHHH-
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC--CHHHHHHHHHHHH-
Confidence            4599999999999999999999864221  2334455444444554 66889999999985421  1222233433333 


Q ss_pred             hcCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+..+|++++|+|+++..  .... ..+.+.+.. ++. ...|+++|+||+|+..
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~  306 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKIN  306 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCC
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCC
Confidence            456789999999997443  1111 122333333 331 1348999999999976

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.57  E-value=5.5e-13  Score=108.78  Aligned_cols=131  Identities=16%  Similarity=0.127  Sum_probs=73.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC----Cc----------------------ccee--------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG----------------------VTST--------------   57 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~----~~----------------------~t~~--------------   57 (230)
                      ..++|+++|.+|||||||+|+|+|....+.....    ++                      .|..              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3479999999999999999999998753211100    11                      0000              


Q ss_pred             ---------eeeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCc-cEEEEEEeCCCCCCHHHHHHH
Q 026970           58 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAAL  125 (230)
Q Consensus        58 ---------~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~il~v~d~~~~~~~~~~~~l  125 (230)
                               .....+...+...+.||||||+......  .......+...+..++..+ +++++|++++..+...+.  .
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~  187 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L  187 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--H
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--H
Confidence                     0001111122467999999999753221  1222233334444444344 566667777644444332  2


Q ss_pred             HHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          126 HSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ..+.....  ...++++|+||+|+...
T Consensus       188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~  212 (353)
T 2x2e_A          188 KVAKEVDP--QGQRTIGVITKLDLMDE  212 (353)
T ss_dssp             HHHHHHCT--TCTTEEEEEECGGGSCT
T ss_pred             HHHHHhCc--CCCceEEEeccccccCc
Confidence            23333221  23589999999999863

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.56  E-value=3.8e-14  Score=121.08  Aligned_cols=119  Identities=16%  Similarity=0.186  Sum_probs=78.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccc--------------------cCCCCccceeeeeEEEEeeCCeEEEEEeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTP   77 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (230)
                      ..++|+++|++|+|||||+++|++......                    .....++|.......+.+ .+..+.|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence            458999999999999999999986421100                    001223333333334443 67899999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      |+.++.           .....++..+|++++|+|+.+.........+..+..     ...|+++++||+|+...+
T Consensus        91 G~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           91 GHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCSC
T ss_pred             CChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCcccc
Confidence            997654           223345567899999999987777665555544332     124799999999997644

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.56  E-value=4.9e-14  Score=115.18  Aligned_cols=128  Identities=20%  Similarity=0.259  Sum_probs=66.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----CccceeeeeEEEEe-eCC--eEEEEEeCCCCCCCCCCc---
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGS---   86 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~---   86 (230)
                      ..++|+++|++|+|||||+|+|++...+......     ...|.......... ..+  ..+.+|||||+.+.....   
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            3478999999999999999999887654332110     11233222222211 123  268999999996643211   


Q ss_pred             ----HHHHHHHHHHHHhhc---------CCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           87 ----EFVGKEIVKCIGMAK---------DGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        87 ----~~~~~~~~~~~~~~~---------~~~~~il~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          ..+...+..++....         .++|+++|+++. ...+...+..+++.+    .  ...|+++|+||+|+..
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLT  188 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCC
Confidence                112222223332221         245788888876 456776666555443    2  2348999999999986

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2.9e-14  Score=123.72  Aligned_cols=120  Identities=15%  Similarity=0.230  Sum_probs=82.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccC-----------------------------CCCccceeeeeEEEEee
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-----------------------------SSSGVTSTCEMQRTVLK   66 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~   66 (230)
                      .....+|+++|++|+|||||+|+|++........                             ...++|.......+.. 
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence            3456899999999999999999999764211100                             0135666666665554 


Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccce
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDY  139 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~  139 (230)
                      .+..+.||||||+.+           +...+...+..+|++|+|+|+++.       ........+..+.. ++   .++
T Consensus       243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~  307 (611)
T 3izq_1          243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHN  307 (611)
T ss_dssp             SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCE
T ss_pred             CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCe
Confidence            678999999999854           235555677889999999999742       22333333333332 23   246


Q ss_pred             EEEEEeCCCCCC
Q 026970          140 MIVVFTGGDELE  151 (230)
Q Consensus       140 ~ivv~tk~D~~~  151 (230)
                      +++|+||+|+..
T Consensus       308 iIVVvNKiDl~~  319 (611)
T 3izq_1          308 LIIAMNKMDNVD  319 (611)
T ss_dssp             EEEEEECTTTTT
T ss_pred             EEEEEecccccc
Confidence            999999999875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.55  E-value=2.7e-14  Score=125.74  Aligned_cols=120  Identities=24%  Similarity=0.319  Sum_probs=80.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc------------c----CCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS------------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~------------~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (230)
                      ...++|+++|++|+|||||+|+|++......            .    ....++|.......+.+ .+..+.||||||+.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~   86 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV   86 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence            4558999999999999999999984211000            0    00234455444444554 67899999999998


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ++.       .....    ++..+|++++|+|+.+..+..+...+..+...     ..|+++|+||+|+...+
T Consensus        87 df~-------~~~~~----~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           87 DFT-------VEVER----SLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             SCC-------HHHHH----HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred             chH-------HHHHH----HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCccccc
Confidence            754       11222    33446999999999878887777777665542     34899999999998643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.55  E-value=2.8e-13  Score=112.62  Aligned_cols=121  Identities=17%  Similarity=0.283  Sum_probs=79.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEee--------------C--------CeEEEE
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK--------------D--------GQVVNV   73 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l   73 (230)
                      ....+|+++|+.++|||||+++|+|..... ......++|....+......              .        ...+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            345899999999999999999999764211 11123445655443322110              0        167999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      |||||+.           .+...+......+|++++|+|+++.. .......+..+.. ++.   .|+++|+||+|+...
T Consensus        86 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           86 VDSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE  150 (408)
T ss_dssp             EECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred             EECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence            9999953           23344445566789999999998665 5555555554433 332   379999999998763

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=9.4e-14  Score=105.26  Aligned_cols=120  Identities=22%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ...+|+++|.+|||||||+|++++... +....  .+++.......+.. ++.  .+.++||+|...     .     ..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~--~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~-----~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC--EVLGEDTYERTLMV-DGESATIILLDMWENKG-----E-----NE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH-----H-----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC--CccceeeEEEEEEE-CCeeeEEEEeecCCCcc-----h-----hh
Confidence            447999999999999999999997542 11111  11111111122222 443  567899998542     1     11


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....++..++++++|+|++++-+... ..+...+.+.. .....|+++|+||+|+..
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~  159 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVR  159 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGG
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhc
Confidence            122355678899999999985433222 22333333321 112458999999999864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.54  E-value=4e-14  Score=124.59  Aligned_cols=124  Identities=19%  Similarity=0.241  Sum_probs=81.2

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcccc---cc-------------CCCCccceeeeeEEEEeeCCeEEEEEeC
Q 026970           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK---SR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT   76 (230)
Q Consensus        13 ~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~---~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (230)
                      ..+....++|+++|++|+|||||+++|+......   ..             ....++|.......+.+ .+..+.||||
T Consensus         6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDT   84 (691)
T 1dar_A            6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDT   84 (691)
T ss_dssp             CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECC
T ss_pred             cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEEC
Confidence            3444556899999999999999999998321100   00             00234555555555554 6789999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ||+.++.       ...    ...+..+|++++|+|+.+.........+..+...     ..|+++|+||+|+...+
T Consensus        85 PG~~df~-------~~~----~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           85 PGHVDFT-------IEV----ERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             CSSTTCH-------HHH----HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred             cCccchH-------HHH----HHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccCC
Confidence            9987632       122    2333456999999999878887776666655542     34799999999998654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.54  E-value=1.2e-13  Score=104.26  Aligned_cols=126  Identities=15%  Similarity=0.211  Sum_probs=71.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~   94 (230)
                      ....+|+++|++|+|||||+|+|+|...........+.+......  .. .+ .+.++||||+........  .......
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--EV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--EE-ET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--Ee-cC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            445899999999999999999999876211111122333332222  22 22 678999999864321111  1112112


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+......++++++++|+....+..+.....++.. .    ..|+++|.||+|.+.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~----~~~~~~v~nK~D~~s  151 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-S----NIAVLVLLTKADKLA  151 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-T----TCCEEEEEECGGGSC
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-c----CCCeEEEEecccCCC
Confidence            222222356789999999986666555444444433 2    247889999999886

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.54  E-value=4.6e-15  Score=125.31  Aligned_cols=116  Identities=16%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..++|+++|++++|||||+++|++.....  ....++|.....+.+.+ ++..+.||||||+.++....           
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~-----------   68 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMR-----------   68 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSB-----------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHH-----------
Confidence            44799999999999999999998754321  12344555554444443 56789999999998765332           


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ...+..+|++++|+|+++.........+..+...     ..|+++++||+|+...
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~~  118 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPEA  118 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-----TCCEEEEEECSSSSTT
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-----CceEEEEEEecccccc
Confidence            2445678999999999876665555555554432     2479999999998753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.54  E-value=2.3e-14  Score=106.24  Aligned_cols=116  Identities=18%  Similarity=0.161  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe------eCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL------KDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      .+|+++|++|||||||+|.|++........  ...|....+.....      .....+.+|||||...+           
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------   69 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGM--QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF-----------   69 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHHH-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCC--cceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH-----------
Confidence            689999999999999999999863111111  11122222221111      13457899999995321           


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ......++.+++++++|+|++++....  ...++..+....   ...|+++|+||+|+..
T Consensus        70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~  126 (184)
T 2zej_A           70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSD  126 (184)
T ss_dssp             HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCC
T ss_pred             HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCccc
Confidence            111122334568999999997542211  134444444332   2358999999999865

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.54  E-value=1.6e-13  Score=114.14  Aligned_cols=120  Identities=17%  Similarity=0.272  Sum_probs=80.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeC----------------------CeEEEE
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKD----------------------GQVVNV   73 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~l   73 (230)
                      ....+|+++|+.++|||||+++|+|..... ......++|....+....+..                      ...+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            345899999999999999999999764211 111224456554443322210                      167999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      |||||+.           .+...+......+|++++|+|+++.. .......+..+.. ++.   .++++|+||+|+..
T Consensus        88 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~~  151 (410)
T 1kk1_A           88 IDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVD  151 (410)
T ss_dssp             EECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSC
T ss_pred             EECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCCC
Confidence            9999953           23334444456779999999998665 5566666655544 342   47999999999876

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.53  E-value=7.9e-14  Score=115.73  Aligned_cols=120  Identities=17%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEE----eeCCeEEEEEeCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTV----LKDGQVVNVIDTPGL   79 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~----~~~~~~~~liDtPG~   79 (230)
                      .+..+|+++|++|+|||||+|+|++.......             ......+.........    ......+.++||||+
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            34589999999999999999999985321100             0000000000000000    001268899999997


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .++           ...+...+..+|++++|+|+++.. .......+..+... +.   .|+++|+||+|+..
T Consensus        86 ~~~-----------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~  143 (403)
T 3sjy_A           86 EVL-----------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVS  143 (403)
T ss_dssp             GGG-----------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred             HHH-----------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccc
Confidence            432           233444557789999999998765 55556666655543 42   37999999999986

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.53  E-value=2.1e-14  Score=119.30  Aligned_cols=118  Identities=15%  Similarity=0.196  Sum_probs=81.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc-------cc-c---c----CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA-------FK-S---R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~-------~~-~---~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (230)
                      ....+|+++|++|+|||||+++|++...       +. .   .    ....++|.......+.. .+..+.||||||+.+
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD   87 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH
Confidence            4458999999999999999999987310       00 0   0    00234455444443433 567899999999864


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEeCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE  151 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~~  151 (230)
                      +           ...+...+..+|++++|+|+++........++..+... +    .| +++|+||+|+..
T Consensus        88 f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~  142 (405)
T 2c78_A           88 Y-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFMNKVDMVD  142 (405)
T ss_dssp             G-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCC
T ss_pred             H-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEECccccC
Confidence            2           23333456688999999999877777777666655542 3    24 889999999874

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.53  E-value=3.6e-14  Score=125.00  Aligned_cols=120  Identities=18%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceee-----------ee--------------------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-----------EM--------------------------   60 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~-----------~~--------------------------   60 (230)
                      ...+|+|+|.+|+|||||+|+|+|....+....  ++|...           ..                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~--p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVN--PCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCC--TTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCC--CCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            458999999999999999999999876443322  112100           00                          


Q ss_pred             -----------------EEEEeeCC---eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH
Q 026970           61 -----------------QRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE  120 (230)
Q Consensus        61 -----------------~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~  120 (230)
                                       ..+..+..   ..+.||||||+.+...        .......+++.+|++|+|+|+++..+..
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~  217 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLG  217 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHH
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchh
Confidence                             00000000   3689999999864211        1123334456789999999998777776


Q ss_pred             HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       121 ~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +...+.   +.+. ....|+++|+||+|+..
T Consensus       218 e~~~l~---~~l~-~~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          218 ERRYLE---NYIK-GRGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             HHHHHH---HHTT-TSCCCEEEEEECGGGGG
T ss_pred             HHHHHH---HHHH-hhCCCEEEEEECccccc
Confidence            654442   2221 11347999999999875

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.52  E-value=7.6e-14  Score=115.57  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=80.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccc----------c----cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFK----------S----RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~----------~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      ..+|+++|++++|||||+++|++.....          .    .....++|.......+.. .+..+.||||||+.+   
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~---   78 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD---   78 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH---
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH---
Confidence            4799999999999999999998742100          0    001234555544443432 567899999999642   


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                              +...+...+..+|++++|+|+++.........+..+.. .+.   +++++++||+|+..
T Consensus        79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v---p~iivviNK~Dl~~  133 (397)
T 1d2e_A           79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV---EHVVVYVNKADAVQ  133 (397)
T ss_dssp             --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CCEEEEEECGGGCS
T ss_pred             --------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC---CeEEEEEECcccCC
Confidence                    33445566788999999999987777776666655544 231   23789999999874

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.52  E-value=5.9e-14  Score=121.22  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=79.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-----------------CCeEEEEEeCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFD   81 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~   81 (230)
                      .++|+++|++|+|||||+++|++.....  ....++|.........+.                 ....+.||||||+.+
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            4799999999999999999999765421  112233333222222110                 112589999999987


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.....           ..+..+|++++|+|+++.+...+...+..+...     ..|+++++||+|+..
T Consensus        83 F~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           83 FTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIH  136 (594)
T ss_dssp             CTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred             HHHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence            653322           345678999999999988888777777766542     248999999999864

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.52  E-value=1e-13  Score=110.73  Aligned_cols=120  Identities=14%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|.+||||||+++.+.+.... ......+.|....+..+  .....+.+|||||...+..+.-        ....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~-~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l--------~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQP-LDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY--------DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCS-GGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH--------HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCC-CccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh--------hhhhh
Confidence            5899999999999999988765321 11112233444433333  2346899999999887642110        11245


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +++++++++|+|+++++......+.+++..........|+++|+||+|+..
T Consensus        70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~  120 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS  120 (331)
T ss_dssp             HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred             ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence            788999999999987743333333333333211122458999999999876

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.52  E-value=1.5e-13  Score=117.90  Aligned_cols=120  Identities=18%  Similarity=0.269  Sum_probs=86.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccc--------------------cccCCCCccceeeeeEEEEeeCCeEEEEEeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAF--------------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP   77 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~--------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (230)
                      ..++|+|+|+.++|||||..+|+.....                    .......++|.......+.+ ++..++|||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence            4589999999999999999998622110                    01122456677766676776 88999999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  154 (230)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (230)
                      |+.||.       .++.+++    .-+|++++|+|+.+.........++...+. +    .|.++++||+|....+.
T Consensus       109 GHvDF~-------~Ev~raL----~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~----lp~i~fINK~Dr~~ad~  169 (548)
T 3vqt_A          109 GHQDFS-------EDTYRVL----TAVDSALVVIDAAKGVEAQTRKLMDVCRMR-A----TPVMTFVNKMDREALHP  169 (548)
T ss_dssp             CGGGCS-------HHHHHHH----HSCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSCCCCH
T ss_pred             CcHHHH-------HHHHHHH----HhcCceEEEeecCCCcccccHHHHHHHHHh-C----CceEEEEecccchhcch
Confidence            999986       2333444    455999999999889999998888877764 2    47999999999986553

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.52  E-value=1.3e-13  Score=121.21  Aligned_cols=130  Identities=16%  Similarity=0.180  Sum_probs=80.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCC---------------------------------------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---------------------------------------------   52 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~---------------------------------------------   52 (230)
                      ..++|+++|.+++|||||+|+|+|....+.+....                                             
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            44799999999999999999999987643321110                                             


Q ss_pred             ----ccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHH-HH
Q 026970           53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEE-AA  124 (230)
Q Consensus        53 ----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~-~~  124 (230)
                          +++.......+..++...++|+||||+......  .......+...+..+. ..+|++++|+|++..+...+. .+
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                001111111222234457899999999873321  1222222333333222 577999999999866665554 44


Q ss_pred             HHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          125 LHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       125 l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ++.+...     ..|+++|+||+|++..
T Consensus       210 l~~L~~~-----g~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          210 AKEVDPQ-----GQRTIGVITKLDLMDE  232 (772)
T ss_dssp             HHHHCTT-----CSSEEEEEECTTSSCT
T ss_pred             HHHHHhc-----CCCEEEEEeCcccCCc
Confidence            4444332     3589999999999864

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.26  E-value=1.3e-15  Score=114.84  Aligned_cols=118  Identities=17%  Similarity=0.056  Sum_probs=73.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....+|+++|.+|+|||||++++++.......   .+++.......+.. .....+.+|||||.....           .
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------R   93 (204)
Confidence            45689999999999999999999876542111   11111111111111 123456699999975432           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+...  ..++..+.....   ..|+++|+||+|+..
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~  148 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  148 (204)
Confidence            22345567899999999875543333  245555544322   358999999999875

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.50  E-value=2.6e-14  Score=120.35  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=77.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc-cccc-------------c---------------CCCCccceeeeeEEEEeeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR-AFKS-------------R---------------ASSSGVTSTCEMQRTVLKDG   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~~   68 (230)
                      ...+|+++|++++|||||+|+|++.. .+..             +               ....++|....+..+.. .+
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence            34899999999999999999998641 0000             0               00135566655555543 66


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccceEE
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMI  141 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i  141 (230)
                      ..+.||||||+.+           +...+...+..+|++++|+|+++....       .....+..+.. .+   .++++
T Consensus        85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~---v~~ii  149 (458)
T 1f60_A           85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LG---VRQLI  149 (458)
T ss_dssp             EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TT---CCEEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cC---CCeEE
Confidence            7899999999753           224445667889999999999744221       23333332222 22   23599


Q ss_pred             EEEeCCCCCC
Q 026970          142 VVFTGGDELE  151 (230)
Q Consensus       142 vv~tk~D~~~  151 (230)
                      +|+||+|+..
T Consensus       150 vviNK~Dl~~  159 (458)
T 1f60_A          150 VAVNKMDSVK  159 (458)
T ss_dssp             EEEECGGGGT
T ss_pred             EEEEcccccc
Confidence            9999999873

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.50  E-value=4.4e-14  Score=118.34  Aligned_cols=118  Identities=24%  Similarity=0.330  Sum_probs=73.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc-ccc----------------------------cCCCCccceeeeeEEEEeeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA-FKS----------------------------RASSSGVTSTCEMQRTVLKDG   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~-~~~----------------------------~~~~~~~t~~~~~~~~~~~~~   68 (230)
                      ..++|+++|+.|+|||||+++|++... +..                            .....++|....+..+.. .+
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence            458999999999999999999986411 000                            001234566555554544 56


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEE
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI  141 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i  141 (230)
                      ..+.||||||+.++           ...+...+..+|++++|+|+++.       ........+..+.. ++   .++++
T Consensus        84 ~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~---~~~ii  148 (435)
T 1jny_A           84 YFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MG---LDQLI  148 (435)
T ss_dssp             CEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TT---CTTCE
T ss_pred             eEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeEE
Confidence            78999999998652           23344567889999999999854       22233333333322 23   23689


Q ss_pred             EEEeCCCCCC
Q 026970          142 VVFTGGDELE  151 (230)
Q Consensus       142 vv~tk~D~~~  151 (230)
                      +++||+|+..
T Consensus       149 vviNK~Dl~~  158 (435)
T 1jny_A          149 VAVNKMDLTE  158 (435)
T ss_dssp             EEEECGGGSS
T ss_pred             EEEEcccCCC
Confidence            9999999875

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.50  E-value=3.7e-13  Score=118.65  Aligned_cols=120  Identities=19%  Similarity=0.274  Sum_probs=80.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc---C-------------CCCccceeeeeEEEEeeCC-------eEEEE
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDG-------QVVNV   73 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~-------~~~~l   73 (230)
                      ...++|+++|+.|+|||||+++|+........   .             ...++|.......+.+ .+       ..+.|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence            44589999999999999999999753210000   0             0234455544444444 33       78999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      |||||+.++.           ......+..+|++|+|+|+++.........+..+...     ..|+++|+||+|+...+
T Consensus        87 iDTPG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           87 IDTPGHVDFT-----------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             EeCCCccchH-----------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCccccc
Confidence            9999987642           2222344567999999999877776666655544332     24799999999987644

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.49  E-value=3.2e-13  Score=101.23  Aligned_cols=117  Identities=21%  Similarity=0.203  Sum_probs=71.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|++|||||||++.|++......  ..+..+.......+.. ++.  .+.++||||........          
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~----------   71 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT----------   71 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh----------
Confidence            47999999999999999999998754211  1122222222233333 443  56789999965432211          


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ...+..++++++|+|+.+..+... ..++..+....  ....++++|+||+|+..
T Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~  124 (199)
T 2f9l_A           72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH  124 (199)
T ss_dssp             -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred             -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence             123456789999999874433222 23343343321  12358999999999864

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.49  E-value=1.2e-13  Score=119.10  Aligned_cols=120  Identities=22%  Similarity=0.264  Sum_probs=74.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEEee--C--CeEEEEEeCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLF   80 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~   80 (230)
                      ..++|+++|+.++|||||+++|++.......             ....++|.......+.+.  +  ...+.||||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            3579999999999999999999753210000             012344544433333332  2  2578899999987


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ++.       ..+.    ..+..+|++++|+|+++.........+......     ..|+++|+||+|+...+
T Consensus        85 dF~-------~ev~----r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a~  141 (600)
T 2ywe_A           85 DFS-------YEVS----RALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSAD  141 (600)
T ss_dssp             GGH-------HHHH----HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC
T ss_pred             hHH-------HHHH----HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCccccC
Confidence            642       2222    334567999999999878877665555444332     24799999999987643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.48  E-value=1.5e-13  Score=112.55  Aligned_cols=102  Identities=14%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|++++|||||+++|+          ..++|....+..+.+ .+..+.+|||||+.++.           ..+...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~-----------~~~~~~   80 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTL-----------KSLITA   80 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCH-----------HHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHH-----------HHHHHH
Confidence            89999999999999999998          223455555554544 56789999999987532           222233


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe-CCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDE  149 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t-k~D~  149 (230)
                      +..+|++++|+| +..........+..+.. .+.   +.+++++| |+|+
T Consensus        81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i---~~~ivvvNNK~Dl  125 (370)
T 2elf_A           81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF---KHGIIALTRSDST  125 (370)
T ss_dssp             HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC---CEEEEEECCGGGS
T ss_pred             HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC---CeEEEEEEeccCC
Confidence            467899999999 76776666666665554 332   23488888 9998

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.48  E-value=1.9e-13  Score=110.27  Aligned_cols=116  Identities=19%  Similarity=0.086  Sum_probs=75.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+++|.+|+|||||++.+++......   ..+++.......+. .++.  .+.+|||||...+.           .
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~-----------~  218 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYD-----------R  218 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCS---CCCCSEEEEEEEEE-ETTEEEEEEEEEECCCGGGT-----------T
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcc---cCCcccceeEEEEE-ECCEEEEEEEEeCCCchhhh-----------H
Confidence            448999999999999999999987654211   11222222222222 2444  45599999976533           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .....+..+|++++|+|++++.+....  .++..+.....   ..|+++|+||+|+..
T Consensus       219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  273 (332)
T 2wkq_A          219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  273 (332)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred             HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence            223566789999999999854433332  34555555432   458999999999865

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.48  E-value=3.8e-13  Score=111.07  Aligned_cols=91  Identities=15%  Similarity=0.054  Sum_probs=46.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--------------------eC---CeEEEEEeC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------KD---GQVVNVIDT   76 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~liDt   76 (230)
                      .+|+++|.+|||||||+|+|++.... . ...+++|..........                    .+   ...+.||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~-~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVE-I-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCc-c-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            37999999999999999999998621 1 12233344333321110                    01   247899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC
Q 026970           77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR  116 (230)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~  116 (230)
                      ||+.......    +.+...+...++.+|++++|+|+++.
T Consensus        79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence            9986532111    11222222456789999999999753

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.48  E-value=1.2e-13  Score=119.24  Aligned_cols=119  Identities=21%  Similarity=0.214  Sum_probs=70.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccc-------------cCCCCccceeeeeEEEEee--C--CeEEEEEeCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-------------RASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD   81 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~~   81 (230)
                      .++|+++|+.++|||||+++|+.......             .....++|.......+.+.  +  +..+.||||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            47999999999999999999976321000             0012345555444444442  1  35789999999876


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      +.       ..+..    .+..+|++++|+|++++........+......     ..|+++|+||+|+...+
T Consensus        84 F~-------~ev~~----~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a~  139 (599)
T 3cb4_D           84 FS-------YEVSR----SLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAAD  139 (599)
T ss_dssp             GH-------HHHHH----HHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC
T ss_pred             HH-------HHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCccccc
Confidence            42       22223    33456999999999878776665555444332     24799999999997643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.47  E-value=1.7e-12  Score=107.54  Aligned_cols=129  Identities=20%  Similarity=0.221  Sum_probs=69.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CccceeeeeEEEEee-C--CeEEEEEeCCCCCCCCCCc---
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGS---   86 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~--~~~~~liDtPG~~~~~~~~---   86 (230)
                      +-.+.|+|+|++|+|||||+|+|+|...+..+...    ...|.......+... .  ...++++||||+.......   
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            44478999999999999999999998653222110    011222111111111 1  2368999999997642111   


Q ss_pred             HHHHHHHHHHHHh-----------hc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           87 EFVGKEIVKCIGM-----------AK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        87 ~~~~~~~~~~~~~-----------~~--~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+...+...+..           .+  +.+|+++|+++++ ..++..+..+++.+..      ..++++|+||+|.+.
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~  181 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT  181 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence            1111111111111           12  3456788888876 5788777666655532      348999999999986

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.46  E-value=2.5e-13  Score=101.36  Aligned_cols=119  Identities=21%  Similarity=0.146  Sum_probs=68.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ..+|+++|.+|||||||+|.+++... +...  ..+++.......+.. ++.  .+.++||+|......          .
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~----------~   72 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSD--XEVLGEDTYERTLMV-DGESATIILLDMWENKGENE----------W   72 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----C----------T
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCcc--ccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhh----------h
Confidence            47999999999999999999986432 1111  111111111122222 444  567899999653100          0


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....++..+|++++|+|++++-+... ..+...+.+... ....|+++|+||+|+..
T Consensus        73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR  128 (192)
T ss_dssp             TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGG
T ss_pred             HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhc
Confidence            01123445689999999985433332 334444444321 12358999999999864

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.45  E-value=4.2e-13  Score=115.30  Aligned_cols=120  Identities=16%  Similarity=0.121  Sum_probs=73.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE----EEEe---eCCeEEEEEeCCCCCCCCCCcHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVL---KDGQVVNVIDTPGLFDFSAGSEFV   89 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~---~~~~~~~liDtPG~~~~~~~~~~~   89 (230)
                      ....+|+++|.+|||||||+|+|++...........+.+......    .+..   ..+..+.++||||.........  
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~--  116 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ--  116 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence            345899999999999999999999876421111111111111000    1111   1256899999999665443222  


Q ss_pred             HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                               ..+..+|++++|+|+++ . .....++..+.....   ..|+++|+||+|+...
T Consensus       117 ---------~~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~  165 (535)
T 3dpu_A          117 ---------FFMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPS  165 (535)
T ss_dssp             ---------HHHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTT
T ss_pred             ---------HHccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccc
Confidence                     22345799999999973 2 344667777776532   3589999999998753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.45  E-value=1.4e-12  Score=97.20  Aligned_cols=117  Identities=22%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|++|||||||++.|++......  ..+.++.......+.. ++.  .+.++||||.........         
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~---------   96 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITS---------   96 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCH---------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhH---------
Confidence            47999999999999999999998764221  2222233333333333 454  455799999865432221         


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                        ..+..++++++|+|..+..+... ..++..+....  ....++++|+||+|+..
T Consensus        97 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~  148 (191)
T 1oix_A           97 --AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH  148 (191)
T ss_dssp             --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred             --HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence              23456789999999874322211 22333333321  22458999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.45  E-value=1.6e-14  Score=125.00  Aligned_cols=119  Identities=18%  Similarity=0.225  Sum_probs=60.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCccceeeeeEEEEeeC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKD   67 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~   67 (230)
                      ...++|+++|++++|||||+|+|++......                             .....++|.......+.. .
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence            4557899999999999999999975321000                             001235566665555554 5


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhcccccceE
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-----F--SQEEEAALHSLQTLFGKKIFDYM  140 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~  140 (230)
                      +..+.||||||+.++...           +...+..+|++|+|+|++++     +  .......+..+.. ++.   +++
T Consensus       254 ~~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~i  318 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEI  318 (592)
T ss_dssp             -----CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCE
T ss_pred             CeEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence            678999999998764321           12344567999999999753     2  4445555544443 332   258


Q ss_pred             EEEEeCCCCCC
Q 026970          141 IVVFTGGDELE  151 (230)
Q Consensus       141 ivv~tk~D~~~  151 (230)
                      ++|+||+|+..
T Consensus       319 IvviNKiDl~~  329 (592)
T 3mca_A          319 VVSVNKLDLMS  329 (592)
T ss_dssp             EEEEECGGGGT
T ss_pred             EEEEecccccc
Confidence            99999999875

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=102.35  Aligned_cols=133  Identities=20%  Similarity=0.256  Sum_probs=75.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCc---HH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGS---EF   88 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~---~~   88 (230)
                      ++++|+|++|+|||||+|+|+|...+..+..      ............+....  ...++++|+||++......   ..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            6899999999999999999998765433210      00111111111111101  1368999999998643211   11


Q ss_pred             HHHH----HHHHHHhh----------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           89 VGKE----IVKCIGMA----------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        89 ~~~~----~~~~~~~~----------~~~~~~il~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      +...    +.......          ...+++.++++|. +..++..+...++.+.+.      .++++|++|+|.+.  
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt--  154 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMT--  154 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSC--
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCC--
Confidence            2111    12222111          1245888898886 468888887777766553      37999999999987  


Q ss_pred             hhhHHHH
Q 026970          154 DETLEDY  160 (230)
Q Consensus       154 ~~~~~~~  160 (230)
                      ...+..+
T Consensus       155 ~~e~~~~  161 (270)
T 3sop_A          155 LEEKSEF  161 (270)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.42  E-value=2.2e-13  Score=114.92  Aligned_cols=119  Identities=18%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc-cc------------------------cc----CCCCccceeeeeEEEEeeC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA-FK------------------------SR----ASSSGVTSTCEMQRTVLKD   67 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~-~~------------------------~~----~~~~~~t~~~~~~~~~~~~   67 (230)
                      ....+|+++|+.++|||||+++|++... +.                        ..    ....++|....+..+.. +
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence            4457999999999999999999974211 00                        00    01235566655544554 6


Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccceE
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYM  140 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~  140 (230)
                      +..+.||||||+.++.           ..+...+..+|++++|+|+++...       ......+..+.. .+   .+++
T Consensus       120 ~~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~---vp~i  184 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QG---INHL  184 (467)
T ss_dssp             SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TT---CSSE
T ss_pred             CeEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cC---CCEE
Confidence            7899999999986532           333345678899999999985521       123333333322 23   1249


Q ss_pred             EEEEeCCCCCC
Q 026970          141 IVVFTGGDELE  151 (230)
Q Consensus       141 ivv~tk~D~~~  151 (230)
                      ++++||+|+..
T Consensus       185 ivviNK~Dl~~  195 (467)
T 1r5b_A          185 VVVINKMDEPS  195 (467)
T ss_dssp             EEEEECTTSTT
T ss_pred             EEEEECccCCC
Confidence            99999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.42  E-value=1.8e-12  Score=117.62  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc---------c---c--ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA---------F---K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~---------~---~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      ....+|+++|++++|||||+++|++...         +   +  ......++|.......+.. .+..+.||||||+.+ 
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed-  371 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD-  371 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH-
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH-
Confidence            4558999999999999999999986411         0   0  0011234555443333332 567899999999642 


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                                +...+...+..+|++|+|+|+++.........+..+... +.   +++++++||+|+..
T Consensus       372 ----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI---P~IIVVINKiDLv~  426 (1289)
T 3avx_A          372 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV---PYIIVFLNKCDMVD  426 (1289)
T ss_dssp             ----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC---SCEEEEEECCTTCC
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC---CeEEEEEeeccccc
Confidence                      334455667889999999999877666666666655542 32   23789999999875

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.40  E-value=7.2e-13  Score=118.95  Aligned_cols=117  Identities=22%  Similarity=0.267  Sum_probs=77.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEee---------------CC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------------DG   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~   68 (230)
                      ..++|+++|+.|+|||||+++|++.......              ....++|.......+.+.               .+
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            4579999999999999999999865321110              012233443333333332               25


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      ..+.||||||+.++..           ....++..+|++++|+|+.++.+..+...+..+...     ..|+++|+||+|
T Consensus        98 ~~i~liDTPG~~df~~-----------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~ilviNK~D  161 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSS-----------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVD  161 (842)
T ss_dssp             EEEEEECCCCCCSSCH-----------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHH
T ss_pred             ceEEEEECcCchhhHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCeEEEEECCC
Confidence            6899999999987641           222344567999999999888887776655444332     247899999999


Q ss_pred             CC
Q 026970          149 EL  150 (230)
Q Consensus       149 ~~  150 (230)
                      +.
T Consensus       162 ~~  163 (842)
T 1n0u_A          162 RA  163 (842)
T ss_dssp             HH
T ss_pred             cc
Confidence            86

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.39  E-value=3e-12  Score=112.31  Aligned_cols=117  Identities=30%  Similarity=0.331  Sum_probs=80.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC----------------CCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (230)
                      ....+|+++|++|+|||||+++|++.........                ..++|.......+.+ ....+.++||||+.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~   85 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence            3458999999999999999999984332100000                123444444444443 67889999999986


Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      ++.       ..+..    .+..+|++++|+|+.+.+......++..+... +    .|+++|+||+|+.
T Consensus        86 ~f~-------~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFV-------GEIRG----ALEAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKG  139 (665)
T ss_dssp             GGH-------HHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred             chH-------HHHHH----HHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence            532       22223    33456899999999888887777777666553 2    4799999999987

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.38  E-value=2.3e-12  Score=106.74  Aligned_cols=125  Identities=16%  Similarity=0.136  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+|+|++|||||||+|+|++......  .....|.......+.......++++||||+.+.......+...+..    
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~--~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~----  231 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR----  231 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCcccc--CcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH----
Confidence            4689999999999999999998854221  2233344444444444234789999999996532111111112222    


Q ss_pred             hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....++.+++++|++ +-.... ....+.+..+...-...|.++|+||+|...
T Consensus       232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  283 (416)
T ss_dssp             HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence            235678999999996 211112 223333333211112458999999999875

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.38  E-value=3.3e-12  Score=105.58  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC--CCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHH-
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEF-   88 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~-   88 (230)
                      -..+..++++|+|++|+|||||+|.|+|.........  ..+.+.. ....+....+  ..++++|+||++... .... 
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~-~~~~~  114 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQI-NKEDS  114 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-C-CHHHH
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhcc-ccchh
Confidence            3344445699999999999999999999854211111  1122222 1221111111  268999999997632 1111 


Q ss_pred             -------HHHHHHHHHHhh---------cC--CccE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970           89 -------VGKEIVKCIGMA---------KD--GIHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (230)
Q Consensus        89 -------~~~~~~~~~~~~---------~~--~~~~-il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~  149 (230)
                             +...+...+...         .+  .+|+ +++++|....++..+..+++.|.      ...++++|+||+|.
T Consensus       115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~  188 (427)
T 2qag_B          115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADA  188 (427)
T ss_dssp             SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhc
Confidence                   122222222221         11  1345 44556766678887766665553      13489999999999


Q ss_pred             CC
Q 026970          150 LE  151 (230)
Q Consensus       150 ~~  151 (230)
                      +.
T Consensus       189 Lt  190 (427)
T 2qag_B          189 IS  190 (427)
T ss_dssp             SC
T ss_pred             cc
Confidence            87

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.37  E-value=5.8e-12  Score=111.37  Aligned_cols=121  Identities=27%  Similarity=0.345  Sum_probs=84.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc----------------ccCCCCccceeeeeEEEEee------CCeEEEEE
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----------------SRASSSGVTSTCEMQRTVLK------DGQVVNVI   74 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~------~~~~~~li   74 (230)
                      ..-++|+|+|+.++|||||..+|+......                ......++|.......+.+.      ++..++||
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            345899999999999999999986332110                01123466666655555542      24689999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ||||+.||.       .++..++..+    |++++|+|+.+.....+...++...+. +    .|.++++||+|....+
T Consensus        91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~-~----lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY-G----VPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH-T----CCEEEEEECSSSTTCC
T ss_pred             eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEccccccCcc
Confidence            999999875       3444555544    899999999889999998888877765 2    3799999999997544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.35  E-value=5.9e-13  Score=116.29  Aligned_cols=117  Identities=19%  Similarity=0.293  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccccc---C-------------CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (230)
                      ++|+++|+.++|||||..+|+........   .             ...++|.......+.+ ++..++||||||+.||.
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSSTH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHHH
Confidence            68999999999999999998632211000   0             0125666666665665 77899999999999865


Q ss_pred             CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                             .++.    ....-+|++++|+|+.+.........++...+. +    .|.++++||+|....+
T Consensus        82 -------~Ev~----raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~----lp~i~~INKmDr~~a~  135 (638)
T 3j25_A           82 -------AEVY----RSLSVLDGAILLISAKDGVQAQTRILFHALRKM-G----IPTIFFINKIDQNGID  135 (638)
T ss_dssp             -------HHHH----HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH-T----CSCEECCEECCSSSCC
T ss_pred             -------HHHH----HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C----CCeEEEEeccccccCC
Confidence                   2233    344566999999999889998888888877775 3    3688999999998654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.29  E-value=4.3e-11  Score=95.39  Aligned_cols=129  Identities=20%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCC----CccceeeeeEEEEee---CCeEEEEEeCCCCCCCCCC---
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASS----SGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAG---   85 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~----~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~---   85 (230)
                      +-.++|+|+|++|+|||||+|+|+|...+.. +...    ...+.......+...   ....++++||||+......   
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            3448999999999999999999998743222 1000    001111111111111   1347899999999543210   


Q ss_pred             cHHHHHHHH----HHHHhh---------cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           86 SEFVGKEIV----KCIGMA---------KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        86 ~~~~~~~~~----~~~~~~---------~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+...+.    ..+...         ...+++++|+++++. .++..+..   .++.. ..  ..++++|+||+|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l-~~--~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAI-HN--KVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHH-TT--TSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHH-Hh--cCCEEEEEEeCCCCC
Confidence            011222111    122111         123466888888753 48776643   33333 21  237999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.26  E-value=1.2e-11  Score=96.46  Aligned_cols=48  Identities=19%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          103 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       103 ~~~~il~v~d~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++|++++|+|++++  .+... ..++..+..... ....|+++|+||+|+..
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~  212 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGV  212 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBC
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccc
Confidence            58999999999865  44433 344555544321 12358999999999864

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.23  E-value=1.7e-11  Score=100.49  Aligned_cols=93  Identities=18%  Similarity=0.136  Sum_probs=49.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC----------------CeEEEEEeCCCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGL   79 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~   79 (230)
                      -....+|+++|.+|+|||||+|+|++...  .....+++|.......+...+                ...+.++||||+
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl   96 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL   96 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence            34557999999999999999999999864  112233445544444333211                235899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      .......+.+...+    ...++.+|++++|+|+.
T Consensus        97 ~~~as~~~glg~~~----l~~ir~aD~Il~VvD~~  127 (396)
T 2ohf_A           97 VKGAHNGQGLGNAF----LSHISACDGIFHLTRAF  127 (396)
T ss_dssp             ----------CCHH----HHHHHTSSSEEEEEEC-
T ss_pred             ccccchhhHHHHHH----HHHHHhcCeEEEEEecC
Confidence            86443222222222    23445779999999986

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.23  E-value=3.8e-13  Score=110.13  Aligned_cols=123  Identities=18%  Similarity=0.191  Sum_probs=69.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccc-----ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ..+|+++|.+|+|||||+|+|++.....     .....+++|.......+    +..+.++||||+.+.....+.+..+.
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL----DEESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES----SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe----cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence            3689999999999999999999864211     11223445554443322    22378999999987653233222222


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+. ....++.++|++++...+.......++.+.     ....|+++++||.|.+.
T Consensus       236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~-----~~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS-----GGRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred             HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEec-----CCCceEEEEecCccccc
Confidence            22221 124678899999874211111111111111     12348999999999986

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.22  E-value=8.3e-12  Score=101.33  Aligned_cols=90  Identities=17%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC----------------CeEEEEEeCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS   83 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~~   83 (230)
                      .+|+++|.+|+|||||+|+|++......  ..+++|..+....+...+                +..+.++||||+....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~--~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            6899999999999999999998763111  223344444433333322                1479999999997532


Q ss_pred             CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC
Q 026970           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  115 (230)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~  115 (230)
                      .....+...+.    ..++.+|++++|+|+++
T Consensus        81 ~~~~gl~~~fl----~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFL----ANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHH----HHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHH----HHHHhcCeEEEEEecCC
Confidence            11111111122    23457799999999874

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.18  E-value=6.5e-13  Score=108.83  Aligned_cols=122  Identities=20%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC-----ccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ..+|+++|.+|+|||||+|+|++.     ...... ..+++|........    +..+.++||||+.+.......+..+.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEIPL----ESGATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEEEC----STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEEEe----CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence            368999999999999999999986     221121 23445555443322    23478999999987543222222222


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+. ....++.++|++++...+.......++.+.     ....++++++||.|.+.
T Consensus       237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~-----~~~~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK-----GGRRSFVCYMANELTVH  288 (369)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred             HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc-----CCCceEEEEecCCcccc
Confidence            22221 125678999999884221101111111111     12347999999999875

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.16  E-value=1e-10  Score=96.06  Aligned_cols=96  Identities=17%  Similarity=0.120  Sum_probs=62.2

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC----------------CeEEEEEeCC
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTP   77 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtP   77 (230)
                      ..-....+|+|+|++|||||||+|+|+|....... ..+++|..+....+...+                +..+.++|||
T Consensus        15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p   93 (392)
T 1ni3_A           15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA   93 (392)
T ss_dssp             SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence            33445689999999999999999999996541221 233445555444443322                1357999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      |+.......+.+...+..    .+..+|++++|+++.
T Consensus        94 Gl~~~~s~~e~L~~~fl~----~ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           94 GLTKGASTGVGLGNAFLS----HVRAVDAIYQVVRAF  126 (392)
T ss_dssp             GGCCCCCSSSSSCHHHHH----HHTTCSEEEEEEECC
T ss_pred             ccccCCcHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence            998654433333333333    335679999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.15  E-value=4.5e-11  Score=97.22  Aligned_cols=25  Identities=28%  Similarity=0.094  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .....|+|+|++|||||||+|.|++
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3458999999999999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.15  E-value=6.5e-11  Score=96.56  Aligned_cols=90  Identities=21%  Similarity=0.175  Sum_probs=56.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee--------------------CCeEEEEEeCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL   79 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~liDtPG~   79 (230)
                      .+|+++|.+|+|||||+|+|++.... . ...+.+|...........                    .+..+.++||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~-v-~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANAL-A-ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTT-C-SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            57999999999999999999986421 1 112233443333322211                    2357999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC
Q 026970           80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  115 (230)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~  115 (230)
                      .......+.+...+...    ++.+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence            86543333233333333    356799999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.12  E-value=1.3e-10  Score=94.16  Aligned_cols=25  Identities=20%  Similarity=0.169  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .....|+++|++|+|||||+|.|++
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4558999999999999999999964

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.12  E-value=3.1e-10  Score=97.54  Aligned_cols=108  Identities=19%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEE--eeCCeEEEEEeCCCCCCCCC-CcHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFSA-GSEFVGKE   92 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~-~~~~~~~~   92 (230)
                      .+..+|+|+|.+|+|||||+|+|+|... +..+....++|.........  ...+..+.|+||||+.+... ........
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~  115 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI  115 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence            4457899999999999999999999864 22211122333333222111  12567899999999987543 22221121


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~  130 (230)
                      +.  +.....  +  ++|+++...++..+...+..+.+
T Consensus       116 fa--la~lls--s--~lv~n~~~~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          116 FA--LAVLLS--S--TFVYNSIGTINQQAMDQLYYVTE  147 (592)
T ss_dssp             HH--HHHHHC--S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HH--HHHHhc--C--eEEEECCCCccHHHHHHHHHHHH
Confidence            11  111111  1  45566655788877666655444

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.10  E-value=3.8e-11  Score=97.96  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ...++|+++|.+|+|||||++.|+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4558999999999999999999863

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.09  E-value=2.2e-09  Score=90.79  Aligned_cols=123  Identities=15%  Similarity=0.167  Sum_probs=70.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh------CCccccccCCC-Cccc--------e--eeeeEEEE---------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS-SGVT--------S--TCEMQRTV---------------   64 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~------~~~~~~~~~~~-~~~t--------~--~~~~~~~~---------------   64 (230)
                      ..+.+|+++|.+||||||+++.|+      |..+....... .+..        .  ...++...               
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345799999999999999999998      66542221111 0000        0  01111100               


Q ss_pred             -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEE
Q 026970           65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIV  142 (230)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~iv  142 (230)
                       ...+..+.||||||....   ......++......  ..+|.+++|+|+....+  .....+.+.+.      .+ ..+
T Consensus       179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv  245 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV  245 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred             HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence             014568999999998752   22334444333322  26789999999975443  33333333332      24 489


Q ss_pred             EEeCCCCCCC
Q 026970          143 VFTGGDELED  152 (230)
Q Consensus       143 v~tk~D~~~~  152 (230)
                      |+||+|....
T Consensus       246 VlNK~D~~~~  255 (504)
T 2j37_W          246 IVTKLDGHAK  255 (504)
T ss_dssp             EEECTTSCCC
T ss_pred             EEeCCccccc
Confidence            9999998753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.09  E-value=2.6e-10  Score=90.00  Aligned_cols=67  Identities=21%  Similarity=0.329  Sum_probs=42.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (230)
                      ....+|+++|.+|+|||||+|+|+|.....++. .+++|...+...    .+..+.++||||+..+......
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVK----VGKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCHH
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEE----eCCCEEEEECcCcCCCCCCCHH
Confidence            345799999999999999999999987543332 334555554322    2457899999999987655443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.98  E-value=9.7e-10  Score=88.88  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .....++|+|++|+|||||+|.|+|
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999999984

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.97  E-value=3.3e-09  Score=92.24  Aligned_cols=80  Identities=21%  Similarity=0.172  Sum_probs=43.6

Q ss_pred             eEEEEEeCCCCCCC--CCCcHHHHHHHHHHHHhhcCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970           69 QVVNVIDTPGLFDF--SAGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (230)
Q Consensus        69 ~~~~liDtPG~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t  145 (230)
                      ..+.++|.||+...  ..-+......+...+..+.... ..++++++.+..+.  ....++.+...-.  ...++++|+|
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l~la~~v~~--~g~rtI~VlT  222 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEALSMAQEVDP--EGDRTIGILT  222 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHHHHHHHHCS--SCCSEEEEEE
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHHHHHHHHhh--cCCceEEEec
Confidence            46899999998763  2222334456666665544333 45555666542222  2234444444321  1247999999


Q ss_pred             CCCCCCC
Q 026970          146 GGDELED  152 (230)
Q Consensus       146 k~D~~~~  152 (230)
                      |+|.+..
T Consensus       223 K~Dlv~~  229 (608)
T 3szr_A          223 KPDLVDK  229 (608)
T ss_dssp             CGGGSSS
T ss_pred             chhhcCc
Confidence            9999853

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.96  E-value=2e-09  Score=83.89  Aligned_cols=128  Identities=16%  Similarity=0.039  Sum_probs=67.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh-----CCccccccCCCCcc--------------ceeeeeE-EE-------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL-----GRRAFKSRASSSGV--------------TSTCEMQ-RT-------------   63 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~-----~~~~~~~~~~~~~~--------------t~~~~~~-~~-------------   63 (230)
                      .....+++.|..||||||+++.|+     |.............              +...... ..             
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL   91 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence            345788899999999999999998     65543222111100              0000000 00             


Q ss_pred             ------------EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHH-HHHHHHH
Q 026970           64 ------------VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQT  130 (230)
Q Consensus        64 ------------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~  130 (230)
                                  ....+..+.||||||..+..     ....+...+...+.. +++++++|+....+..+.. .......
T Consensus        92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~  165 (262)
T 1yrb_A           92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL  165 (262)
T ss_dssp             HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence                        00012478999999975311     111111112223345 7899999986444544422 1111111


Q ss_pred             HhcccccceEEEEEeCCCCCC
Q 026970          131 LFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       131 ~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .. .....|+++|+||+|...
T Consensus       166 ~~-~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          166 ID-LRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             HH-HHHTSCEEEEECCGGGCC
T ss_pred             Hh-cccCCCeEEEEecccccc
Confidence            11 112347999999999875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.88  E-value=1.6e-08  Score=83.56  Aligned_cols=117  Identities=19%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCC-C--CccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-S--SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...++|+|++|+|||||+|.|+|...+..+.. .  ..++.. .+ .........++++|+||+......    ..++..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~-v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~  142 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RH-PYKHPNIPNVVFWDLPGIGSTNFP----PDTYLE  142 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CE-EEECSSCTTEEEEECCCGGGSSCC----HHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EE-eccccccCCeeehHhhcccchHHH----HHHHHH
Confidence            35899999999999999999999654322211 1  111111 11 111112236899999998643211    122222


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      .+.  ....+.+++ ++.. +.......+...+... +    .|+++|.|+.|.+
T Consensus       143 ~~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~----~p~~lV~tkpdll  188 (413)
T 1tq4_A          143 KMK--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM-K----KEFYFVRTKVDSD  188 (413)
T ss_dssp             HTT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-T----CEEEEEECCHHHH
T ss_pred             HcC--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc-C----CCeEEEEecCccc
Confidence            221  222345554 7776 4565666666666552 2    4899999998865

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.85  E-value=6e-08  Score=80.61  Aligned_cols=122  Identities=16%  Similarity=0.166  Sum_probs=69.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh------CCccccccCCC--Ccc---------ceeeeeEEEE----------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS--SGV---------TSTCEMQRTV----------------   64 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~------~~~~~~~~~~~--~~~---------t~~~~~~~~~----------------   64 (230)
                      .+..|+++|++|+||||++..|+      |..+.......  .+.         .....++...                
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999987      33321111000  000         0000001000                


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                      ...+..+.||||||....   ......++.......  .+|.+++|+|+...  .........+.+.+     ....+|+
T Consensus       179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred             HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence            013467999999997642   334445554443322  46899999999732  23333334444332     3578999


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||+|...
T Consensus       247 TKlD~~~  253 (443)
T 3dm5_A          247 TKLDGSA  253 (443)
T ss_dssp             ECCSSCS
T ss_pred             ECCCCcc
Confidence            9999875

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.81  E-value=4.1e-09  Score=82.22  Aligned_cols=60  Identities=30%  Similarity=0.412  Sum_probs=39.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      .+++++|.+|+|||||+|+|++......+. ..++|...+...    .+..+.++||||+.++..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQWFS----LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE----CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEEEE----eCCCEEEEECCCcccCcC
Confidence            589999999999999999999887543322 334455443221    245788999999998665

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.75  E-value=2e-08  Score=83.43  Aligned_cols=124  Identities=19%  Similarity=0.178  Sum_probs=70.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh------CCccccccCCC---------------CccceeeeeE----------EEEe-
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS---------------SGVTSTCEMQ----------RTVL-   65 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~------~~~~~~~~~~~---------------~~~t~~~~~~----------~~~~-   65 (230)
                      .+..|+++|++|+||||++..|+      |..+.......               .+........          .+.. 
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            45789999999999999999987      33221110000               0000000000          0000 


Q ss_pred             -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                       ..+..+.++||||..... .......++.......  .++.+++|+|+...  .......+.+.+.+     .+..+|+
T Consensus       176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVIl  245 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVII  245 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEEE
T ss_pred             HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEEE
Confidence             125678999999975411 1233445555544333  45899999998632  22334444454433     3688999


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||.|...
T Consensus       246 TKlD~~a  252 (433)
T 3kl4_A          246 TKMDGTA  252 (433)
T ss_dssp             ECGGGCS
T ss_pred             ecccccc
Confidence            9999764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.74  E-value=7.6e-09  Score=78.40  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..++|+++|.+|+|||||++.|++.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3479999999999999999999865

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.67  E-value=2.5e-08  Score=83.07  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc------cccccCCCC----------------------c-cceee-ee--EEEEe
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSS----------------------G-VTSTC-EM--QRTVL   65 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~------~~~~~~~~~----------------------~-~t~~~-~~--~~~~~   65 (230)
                      .+..|+++|++|+||||+++.|.+..      +........                      + .+... ..  ..+..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~  177 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK  177 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence            34689999999999999999987632      110000000                      0 01110 00  00000


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ceEEEEE
Q 026970           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVVF  144 (230)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivv~  144 (230)
                      ..+..+.|+||||....   .......+...  .....+|.+++|+|+....  .   ....... +... . +...+|+
T Consensus       178 ~~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVl  245 (432)
T 2v3c_C          178 FKKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIV  245 (432)
T ss_dssp             TSSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEE
T ss_pred             hhCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEE
Confidence            14567899999998642   22233333221  1223679999999986332  2   2222222 2221 2 3488999


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||+|...
T Consensus       246 nK~D~~~  252 (432)
T 2v3c_C          246 TKLDGSA  252 (432)
T ss_dssp             ECSSSCS
T ss_pred             eCCCCcc
Confidence            9999864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.63  E-value=4.5e-07  Score=72.10  Aligned_cols=127  Identities=16%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccc------cCCC--Cc-c--------ceeeeeEEEE----------------
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS------RASS--SG-V--------TSTCEMQRTV----------------   64 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~------~~~~--~~-~--------t~~~~~~~~~----------------   64 (230)
                      .+..|+++|++||||||+++.|.+......      +...  .+ .        .....+....                
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            457999999999999999999975432111      0000  00 0        0000010000                


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh-hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 026970           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (230)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv  143 (230)
                      ...+..+.++||+|..................+.. ....++.+++++|+..+.  .....+..+.+..+     ..+++
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~ii  253 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGVI  253 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEEE
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEEE
Confidence            00233567999999864321111112222333322 234578888899986442  23334444444333     57899


Q ss_pred             EeCCCCCC
Q 026970          144 FTGGDELE  151 (230)
Q Consensus       144 ~tk~D~~~  151 (230)
                      +||.|...
T Consensus       254 vTh~d~~a  261 (304)
T 1rj9_A          254 VTKLDGTA  261 (304)
T ss_dssp             EECTTSSC
T ss_pred             EECCcccc
Confidence            99998764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.61  E-value=6.2e-07  Score=71.85  Aligned_cols=74  Identities=11%  Similarity=0.126  Sum_probs=49.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC-------CCCC-HHHHHHHHHHHHHhccc--c
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFS-QEEEAALHSLQTLFGKK--I  136 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-------~~~~-~~~~~~l~~l~~~~~~~--~  136 (230)
                      ++..+.+|||+|..           .++.....++.+++++|+|+|++       +.-+ .....++.++...+...  .
T Consensus       165 ~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~  233 (327)
T 3ohm_A          165 QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ  233 (327)
T ss_dssp             TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred             eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence            66789999999953           33445567889999999999764       1111 22234555555554422  2


Q ss_pred             cceEEEEEeCCCCCC
Q 026970          137 FDYMIVVFTGGDELE  151 (230)
Q Consensus       137 ~~~~ivv~tk~D~~~  151 (230)
                      ..|+++++||+|+..
T Consensus       234 ~~~iiL~~NK~DL~~  248 (327)
T 3ohm_A          234 NSSVILFLNKKDLLE  248 (327)
T ss_dssp             TCEEEEEEECHHHHH
T ss_pred             CceEEEEEECchhhh
Confidence            358999999999764

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.61  E-value=8.8e-07  Score=71.26  Aligned_cols=74  Identities=11%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC-------C-CCHHHHHHHHHHHHHhccc--c
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-------R-FSQEEEAALHSLQTLFGKK--I  136 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-------~-~~~~~~~~l~~l~~~~~~~--~  136 (230)
                      ++..+.+|||+|.           +.++.....++.+++++|+|+|+++       . -.........++...+...  .
T Consensus       159 ~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~  227 (340)
T 4fid_A          159 KDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK  227 (340)
T ss_dssp             SSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred             eeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence            5678999999995           3445666788999999999999861       0 1112233444444443322  2


Q ss_pred             cceEEEEEeCCCCCC
Q 026970          137 FDYMIVVFTGGDELE  151 (230)
Q Consensus       137 ~~~~ivv~tk~D~~~  151 (230)
                      ..|+++++||+|+..
T Consensus       228 ~~piiLv~NK~DL~~  242 (340)
T 4fid_A          228 GAVKLIFLNKMDLFE  242 (340)
T ss_dssp             TSEEEEEEECHHHHH
T ss_pred             CCeEEEEEECchhhh
Confidence            358999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.61  E-value=2.3e-07  Score=77.92  Aligned_cols=135  Identities=13%  Similarity=0.147  Sum_probs=72.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------CCCCcc-------c----eeeeeEEEE---------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------T----STCEMQRTV---------------   64 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~~~~-------t----~~~~~~~~~---------------   64 (230)
                      ..+..|+|+|++|+|||||++.|.|......+      ......       .    ....+....               
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~  370 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA  370 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence            34579999999999999999999764321110      000000       0    000011000               


Q ss_pred             -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH---HHHhh-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 026970           65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY  139 (230)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (230)
                       ...+..+.++||+|....   ......++.+   .+... ...++-+++|+|++..  ......++.+.+.++     .
T Consensus       371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i  440 (503)
T 2yhs_A          371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L  440 (503)
T ss_dssp             HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred             HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence             013456889999998642   2223333332   22222 1236789999998633  333344444544433     4


Q ss_pred             EEEEEeCCCCCCCChhhHHHHhc
Q 026970          140 MIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus       140 ~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                      ..+|+||.|.... ...+..++.
T Consensus       441 tgvIlTKLD~tak-gG~~lsi~~  462 (503)
T 2yhs_A          441 TGITLTKLDGTAK-GGVIFSVAD  462 (503)
T ss_dssp             SEEEEECGGGCSC-CTHHHHHHH
T ss_pred             CEEEEEcCCCccc-ccHHHHHHH
Confidence            6789999997532 344444443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.60  E-value=1.9e-07  Score=77.79  Aligned_cols=108  Identities=17%  Similarity=0.142  Sum_probs=56.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC-----------------ccccccCCCCccceeeeeEE----EEeeC--CeEEEEE
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR-----------------RAFKSRASSSGVTSTCEMQR----TVLKD--GQVVNVI   74 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~li   74 (230)
                      +...|.|+|++++|||||+|.|+|.                 ..|..+......|.......    .....  ...+.++
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll  145 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM  145 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence            4468999999999999999999864                 12222211222222221111    01112  2468999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 026970           75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL  131 (230)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~  131 (230)
                      ||||+.+...+ ...-..+.. +....  .+++||-  ....+...+...+..+.+.
T Consensus       146 DTeG~~~~~~~-~~~d~~ifa-l~~lL--Ss~~IyN--~~~~i~~~~l~~L~~~~e~  196 (447)
T 3q5d_A          146 DTQGTFDSQST-LRDSATVFA-LSTMI--SSIQVYN--LSQNVQEDDLQHLQLFTEY  196 (447)
T ss_dssp             EEECCCSSHHH-HHHHHHHHH-HHHHH--CSEEEEE--ESSSCCHHHHHHHHHHHHH
T ss_pred             cCCcccccccc-hhhhHHHHH-HHHHH--hhHHHHh--hcccccHHHHHHHHHHHHH
Confidence            99999875321 111112221 11111  1334443  3336777777666665553

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.57  E-value=1.8e-07  Score=75.22  Aligned_cols=123  Identities=15%  Similarity=0.129  Sum_probs=66.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------CCC--Ccc-------ceeee--eEEEE---------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASS--SGV-------TSTCE--MQRTV---------------   64 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~--~~~-------t~~~~--~~~~~---------------   64 (230)
                      .++..++++|++|+||||+++.|++......+      ...  .+.       .....  +....               
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            44679999999999999999999864321110      000  000       00000  00000               


Q ss_pred             -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 026970           65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (230)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv  143 (230)
                       ...+..+.++||+|.......   ...++.......  .+|..++++|+...  ......++.+.+..+     ..+++
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii  274 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII  274 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred             HHhccchhhHHhhccchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence             012345778999998653322   233333322222  35788999998633  223333444443332     57899


Q ss_pred             EeCCCCCC
Q 026970          144 FTGGDELE  151 (230)
Q Consensus       144 ~tk~D~~~  151 (230)
                      +||.|...
T Consensus       275 lTKlD~~a  282 (328)
T 3e70_C          275 LTKLDADA  282 (328)
T ss_dssp             EECGGGCS
T ss_pred             EeCcCCcc
Confidence            99999754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.50  E-value=9.3e-07  Score=71.72  Aligned_cols=73  Identities=11%  Similarity=0.122  Sum_probs=49.5

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHhccc--c
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTLFGKK--I  136 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~  136 (230)
                      ++..+.+|||+|.....           .....++.+++++|+|+|+++.-        .........++.......  .
T Consensus       191 ~~~~l~iwDt~GQe~~r-----------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~  259 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSER-----------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT  259 (353)
T ss_dssp             TTEEEEEEEECCSGGGG-----------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred             CCeeEEEEeCCCchhhh-----------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence            56789999999965432           33446889999999999997421        112234445555544321  2


Q ss_pred             cceEEEEEeCCCCC
Q 026970          137 FDYMIVVFTGGDEL  150 (230)
Q Consensus       137 ~~~~ivv~tk~D~~  150 (230)
                      ..|+++++||+|+.
T Consensus       260 ~~piiLv~NK~DL~  273 (353)
T 1cip_A          260 DTSIILFLNKKDLF  273 (353)
T ss_dssp             TSEEEEEEECHHHH
T ss_pred             CCcEEEEEECcCch
Confidence            35899999999985

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.46  E-value=3.4e-06  Score=70.25  Aligned_cols=123  Identities=17%  Similarity=0.128  Sum_probs=66.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh-------CCccccccCCCCcc-ce----------eeeeEE--------------E-
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGV-TS----------TCEMQR--------------T-   63 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~-------~~~~~~~~~~~~~~-t~----------~~~~~~--------------~-   63 (230)
                      ..+..|+++|.+|+||||++..|+       |..+.......... ..          ...+..              + 
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            345789999999999999998887       54432111111000 00          000000              0 


Q ss_pred             Eee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 026970           64 VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  142 (230)
Q Consensus        64 ~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv  142 (230)
                      ... .+..+.||||||.....   ......+....  ....++.+++|+|+....  ......+.+...     .....+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~--~~~~p~~vllVvda~~g~--~~~~~~~~f~~~-----l~i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVH--ASINPVETLFVVDAMTGQ--DAANTAKAFNEA-----LPLTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTTC---HHHHHHHHHHH--HHSCCSEEEEEEETTBCT--THHHHHHHHHHH-----SCCCCE
T ss_pred             HHHhCCCCEEEEECCCccccc---HHHHHHHHHHH--HhhcCcceeEEeecchhH--HHHHHHHHHhcc-----CCCeEE
Confidence            001 35679999999976422   23333333332  123578899999987332  222222222221     122557


Q ss_pred             EEeCCCCCC
Q 026970          143 VFTGGDELE  151 (230)
Q Consensus       143 v~tk~D~~~  151 (230)
                      |+||.|...
T Consensus       246 VlnK~D~~~  254 (433)
T 2xxa_A          246 VLTKVDGDA  254 (433)
T ss_dssp             EEECTTSSS
T ss_pred             EEecCCCCc
Confidence            999999764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.45  E-value=1.3e-06  Score=69.24  Aligned_cols=123  Identities=14%  Similarity=0.110  Sum_probs=65.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC------CccccccCCCC-ccce----------eeeeEE--------------EE-e-
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG------RRAFKSRASSS-GVTS----------TCEMQR--------------TV-L-   65 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~------~~~~~~~~~~~-~~t~----------~~~~~~--------------~~-~-   65 (230)
                      +..|+++|++|+||||++..|.+      ........... +...          ...+..              +. . 
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999873      22211111100 0000          000000              00 0 


Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970           66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  145 (230)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t  145 (230)
                      ..+..+.++||||..... ..+....++......  ..+|.+++|+++...  .......+.+.+    . .....+|+|
T Consensus       178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~~~~~~~~~~~~----~-~~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEA--IKPDEVTLVIDASIG--QKAYDLASKFNQ----A-SKIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHH----T-CTTEEEEEE
T ss_pred             hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--HHHHHHHHHHHh----h-CCCCEEEEe
Confidence            145579999999986410 122233333322111  256899999998632  222222222222    1 223789999


Q ss_pred             CCCCCC
Q 026970          146 GGDELE  151 (230)
Q Consensus       146 k~D~~~  151 (230)
                      |.|...
T Consensus       248 k~D~~~  253 (297)
T 1j8m_F          248 KMDGTA  253 (297)
T ss_dssp             CGGGCT
T ss_pred             CCCCCc
Confidence            999764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.39  E-value=1.2e-07  Score=75.41  Aligned_cols=59  Identities=29%  Similarity=0.363  Sum_probs=33.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS------SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      ...++|+|++|+|||||+|+|+|......+.-.      ..+|......  .. .  ...++||||+..+
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~~-~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HT-S--GGLVADTPGFSSL  237 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EE-T--TEEEESSCSCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--hc-C--CEEEecCCCcccc
Confidence            468999999999999999999987643332111      1233222221  11 1  3479999998753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.36  E-value=3.1e-07  Score=73.08  Aligned_cols=134  Identities=16%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc------cCCCCc-cc----------eeeeeEE--------------E--
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS------RASSSG-VT----------STCEMQR--------------T--   63 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~------~~~~~~-~t----------~~~~~~~--------------~--   63 (230)
                      ..+..|+++|++|+||||++..|.+......      ...... ..          ....+..              +  
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~  181 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH  181 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence            3457899999999999999998875321100      000000 00          0000000              0  


Q ss_pred             EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh---c-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 026970           64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA---K-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY  139 (230)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (230)
                      ....+..+.++||||..   ........++.......   . ..++.+++|+++...  .......+.+.+.     ...
T Consensus       182 a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~-----~~i  251 (306)
T 1vma_A          182 ALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA-----VNV  251 (306)
T ss_dssp             HHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH-----SCC
T ss_pred             HHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhc-----CCC
Confidence            01134568999999963   22333444443332221   2 347889999998611  1222222223222     224


Q ss_pred             EEEEEeCCCCCCCChhhHHHHh
Q 026970          140 MIVVFTGGDELEDNDETLEDYL  161 (230)
Q Consensus       140 ~ivv~tk~D~~~~~~~~~~~~l  161 (230)
                      .-+|+||.|.... ...+.+..
T Consensus       252 ~gvVlTk~D~~~~-gG~~l~~~  272 (306)
T 1vma_A          252 TGIILTKLDGTAK-GGITLAIA  272 (306)
T ss_dssp             CEEEEECGGGCSC-TTHHHHHH
T ss_pred             CEEEEeCCCCccc-hHHHHHHH
Confidence            6688999997643 33344433

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.32  E-value=4.4e-07  Score=68.82  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..++|+++|.+|||||||++.|+..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4589999999999999999999865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.31  E-value=7.3e-06  Score=65.06  Aligned_cols=125  Identities=17%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------CCCCcc-------ce----eeeeEEE--E-------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------TS----TCEMQRT--V-------------   64 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~~~~-------t~----~~~~~~~--~-------------   64 (230)
                      ..+..++++|++|+||||+++.|+|......+      ......       ..    ...+...  .             
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~  177 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK  177 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence            34579999999999999999999764321111      000000       00    0011100  0             


Q ss_pred             --eeCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHHHh-hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 026970           65 --LKDGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD  138 (230)
Q Consensus        65 --~~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (230)
                        ...+....++||.|.....   .....++   ...+.. ....++-+++++|++..++...  .+..+.+..+     
T Consensus       178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g-----  247 (302)
T 3b9q_A          178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----  247 (302)
T ss_dssp             HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred             HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----
Confidence              0012346789999986532   2222222   222222 2345777888888764544332  2333333323     


Q ss_pred             eEEEEEeCCCCCC
Q 026970          139 YMIVVFTGGDELE  151 (230)
Q Consensus       139 ~~ivv~tk~D~~~  151 (230)
                      ..++++||.|...
T Consensus       248 ~t~iiiThlD~~~  260 (302)
T 3b9q_A          248 ITGLILTKLDGSA  260 (302)
T ss_dssp             CCEEEEECCSSCS
T ss_pred             CCEEEEeCCCCCC
Confidence            5789999988764

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.31  E-value=1.7e-06  Score=71.72  Aligned_cols=122  Identities=18%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCC-ccce----------eeeeEE--------------EEe-
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSS-GVTS----------TCEMQR--------------TVL-   65 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~------~~~~~~~~-~~t~----------~~~~~~--------------~~~-   65 (230)
                      .+..|+++|++|+||||++..|.+...      ........ +...          ...+..              +.. 
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            457889999999999999988864321      00000000 0000          000000              000 


Q ss_pred             -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                       ..+..+.||||||....   ......++.......  .+|.+++|+|+...  .......+.+...     .....+|+
T Consensus       177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~-----l~i~GVIl  244 (425)
T 2ffh_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEK-----VGVTGLVL  244 (425)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHH-----TCCCEEEE
T ss_pred             HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhc-----CCceEEEE
Confidence             13457899999997643   233334443333222  46889999998632  2222222322222     22467899


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||.|...
T Consensus       245 TKlD~~~  251 (425)
T 2ffh_A          245 TKLDGDA  251 (425)
T ss_dssp             ESGGGCS
T ss_pred             eCcCCcc
Confidence            9998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.26  E-value=7.9e-06  Score=66.30  Aligned_cols=125  Identities=17%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------CCCCcc-------ce----eeeeEEEEe--------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------TS----TCEMQRTVL--------------   65 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~~~~-------t~----~~~~~~~~~--------------   65 (230)
                      ..+..|+++|++|+||||+++.|+|......+      ......       +.    ...+.....              
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~  234 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK  234 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence            34579999999999999999999764321110      000000       00    011110000              


Q ss_pred             ---eCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHHH-hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 026970           66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD  138 (230)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~  138 (230)
                         ..+....++||.|.....   .....++   ...+. .....++-+++|+|++..++...  .+..+.+..+     
T Consensus       235 ~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g-----  304 (359)
T 2og2_A          235 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----  304 (359)
T ss_dssp             HHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred             HHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----
Confidence               012346789999986532   2222222   22222 22345777888888764444332  2333333323     


Q ss_pred             eEEEEEeCCCCCC
Q 026970          139 YMIVVFTGGDELE  151 (230)
Q Consensus       139 ~~ivv~tk~D~~~  151 (230)
                      ..++++||.|...
T Consensus       305 ~t~iiiThlD~~~  317 (359)
T 2og2_A          305 ITGLILTKLDGSA  317 (359)
T ss_dssp             CCEEEEESCTTCS
T ss_pred             CeEEEEecCcccc
Confidence            5789999988764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.24  E-value=1.7e-06  Score=68.62  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------CCCCcccee-----------eeeEE----------EEeeCCe
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASSSGVTST-----------CEMQR----------TVLKDGQ   69 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------~~~~~~t~~-----------~~~~~----------~~~~~~~   69 (230)
                      .+..|+++|++|+||||++..|++......+       ......+..           .....          +....+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~  183 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY  183 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence            4579999999999999999998643211000       000000000           00000          0001345


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~  149 (230)
                      .+.|+||||....   ......++...+.  ...++.+++|++++..  .   ..+..+.+.+.  .....-+|+||.|.
T Consensus       184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~---~~~~~~~~~~~--~l~~~giVltk~D~  251 (296)
T 2px0_A          184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--Y---EDMKHIVKRFS--SVPVNQYIFTKIDE  251 (296)
T ss_dssp             SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--H---HHHHHHTTTTS--SSCCCEEEEECTTT
T ss_pred             CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--H---HHHHHHHHHHh--cCCCCEEEEeCCCc
Confidence            7999999998642   2222333333221  1235778899987632  1   12222333333  12345678899997


Q ss_pred             CCCChhhHHHHhc
Q 026970          150 LEDNDETLEDYLG  162 (230)
Q Consensus       150 ~~~~~~~~~~~l~  162 (230)
                      ... ...+...+.
T Consensus       252 ~~~-~g~~~~~~~  263 (296)
T 2px0_A          252 TTS-LGSVFNILA  263 (296)
T ss_dssp             CSC-CHHHHHHHH
T ss_pred             ccc-hhHHHHHHH
Confidence            653 234444443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.24  E-value=5.5e-06  Score=66.34  Aligned_cols=125  Identities=20%  Similarity=0.216  Sum_probs=66.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCCcc-------ce-----eeeeEEE---------------
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSSGV-------TS-----TCEMQRT---------------   63 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~------~~~~~~~~~~-------t~-----~~~~~~~---------------   63 (230)
                      ..+..|+++|++|+||||++..|.+.-.      ..........       ..     ......+               
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~  182 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD  182 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence            4457899999999999999988864321      1000000000       00     0001111               


Q ss_pred             ----EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH---HHHhhc-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 026970           64 ----VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK  135 (230)
Q Consensus        64 ----~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~  135 (230)
                          ....+..+.||||||....   ......++..   .+.... ..+|.+++|+++...     ...+..+.. |...
T Consensus       183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~-~~~~  253 (320)
T 1zu4_A          183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEE-FSKV  253 (320)
T ss_dssp             HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHH-HTTT
T ss_pred             HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHH-Hhhc
Confidence                0013467999999997641   1222233322   222122 346899999998622     223333433 3322


Q ss_pred             ccceEEEEEeCCCCCC
Q 026970          136 IFDYMIVVFTGGDELE  151 (230)
Q Consensus       136 ~~~~~ivv~tk~D~~~  151 (230)
                       ....-+|+||.|...
T Consensus       254 -~~i~GvVltk~d~~~  268 (320)
T 1zu4_A          254 -ADVSGIILTKMDSTS  268 (320)
T ss_dssp             -SCCCEEEEECGGGCS
T ss_pred             -CCCcEEEEeCCCCCC
Confidence             234568999999754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.19  E-value=3.6e-06  Score=66.90  Aligned_cols=58  Identities=22%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccC-CC---C--ccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SS---S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~-~~---~--~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (230)
                      ...++++|++|+|||||+|+|+ ...+..+. ..   .  .+|......  .. . ....++||||+..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~~-~-~~g~v~d~pg~~~  228 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--PF-G-KGSFVGDTPGFSK  228 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--EE-T-TTEEEESSCCCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--Ec-C-CCcEEEECcCcCc
Confidence            4688999999999999999999 64433221 11   1  122222111  11 1 2347899999864

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.17  E-value=2.1e-05  Score=65.38  Aligned_cols=107  Identities=19%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh-------C----------CccccccCCCCccceeeeeEE----EEeeCC--eEEEE
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL-------G----------RRAFKSRASSSGVTSTCEMQR----TVLKDG--QVVNV   73 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~-------~----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l   73 (230)
                      .+...|.|+|..++|||+|+|.|+       |          ...|..+....++|.......    ....++  ..+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            345788899999999999999765       2          133433333344454443321    111233  46999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHH-HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 026970           74 IDTPGLFDFSAGSEFVGKEIVKC-IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  130 (230)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~  130 (230)
                      +||.|+++...+.. .-..+... +-.+    ..+||=..  ..++..+.+.+..+.+
T Consensus       145 lDTEG~~d~~~~~~-~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te  195 (457)
T 4ido_A          145 MDTQGTFDSQSTLR-DSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE  195 (457)
T ss_dssp             EEECCBTCTTCCHH-HHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred             EeccCCCCcccCcc-ccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence            99999988665432 11222211 1111    24444333  3567777666665554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.15  E-value=1.2e-06  Score=70.93  Aligned_cols=26  Identities=35%  Similarity=0.593  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ...++|+|++|+|||||+|.|+|...
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            35899999999999999999999764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.11  E-value=5.2e-06  Score=65.72  Aligned_cols=122  Identities=19%  Similarity=0.175  Sum_probs=65.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccc------ccCCCC-ccce----------eeeeEE--------------EEe-
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFK------SRASSS-GVTS----------TCEMQR--------------TVL-   65 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~------~~~~~~-~~t~----------~~~~~~--------------~~~-   65 (230)
                      .+..++++|++|+||||++..|++.....      .+.... +...          ......              +.. 
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            45789999999999999998886532110      000000 0000          000000              000 


Q ss_pred             -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                       ..+..+.|+||||....   ......++.......  .++.+++|+++...  .......+.+...     ....-+|+
T Consensus       177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~~~~~~~~~~~~-----~~i~givl  244 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEK-----VGVTGLVL  244 (295)
T ss_dssp             HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHH-----TCCCEEEE
T ss_pred             HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HHHHHHHHHHhhc-----CCCCEEEE
Confidence             13457999999987643   233444444443333  46788899998622  2222222222221     22466899


Q ss_pred             eCCCCCC
Q 026970          145 TGGDELE  151 (230)
Q Consensus       145 tk~D~~~  151 (230)
                      ||.|...
T Consensus       245 nk~d~~~  251 (295)
T 1ls1_A          245 TKLDGDA  251 (295)
T ss_dssp             ECGGGCS
T ss_pred             ECCCCCc
Confidence            9999764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.10  E-value=3.2e-06  Score=67.13  Aligned_cols=59  Identities=24%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   81 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (230)
                      ...++++|++|+|||||+|+|+|...+..+.-      ...+|......  ..  .....++|+||+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~--~~--~~~g~v~q~p~~~~  233 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--KF--DFGGYVVDTPGFAN  233 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--EC--TTSCEEESSCSSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE--Ec--CCCCEEEECcCCCc
Confidence            35889999999999999999999765433311      11122222111  11  12347899999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.83  E-value=2e-06  Score=63.81  Aligned_cols=26  Identities=38%  Similarity=0.760  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ....|+|+|++|+|||||++.|++..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            44789999999999999999998653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.83  E-value=1.2e-05  Score=61.43  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|||||||++.|+|...
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            36899999999999999999998754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.81  E-value=6.9e-06  Score=61.12  Aligned_cols=24  Identities=38%  Similarity=0.551  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..++|+|++|+|||||++.|++.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            367899999999999999999874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.81  E-value=8.5e-06  Score=59.60  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCc
Q 026970           21 TVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +++|+|++|+|||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.79  E-value=1.4e-05  Score=60.59  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|+|||||++.|+|...
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5889999999999999999999754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.78  E-value=1.1e-05  Score=60.39  Aligned_cols=26  Identities=35%  Similarity=0.357  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ....++|+|++|||||||++.|+|..
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34689999999999999999998764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.76  E-value=6.2e-05  Score=61.21  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHhccc--c
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTLFGKK--I  136 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~  136 (230)
                      ++..+.+|||+|....           ......++.+++++|||+|+++.-        .........++.......  .
T Consensus       199 ~~~~l~i~Dt~Gq~~~-----------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~  267 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSE-----------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS  267 (362)
T ss_dssp             TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred             CCeEEEEEeccchhhh-----------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence            5788999999997432           234456788999999999998410        112233344444443321  2


Q ss_pred             cceEEEEEeCCCCC
Q 026970          137 FDYMIVVFTGGDEL  150 (230)
Q Consensus       137 ~~~~ivv~tk~D~~  150 (230)
                      ..|+++++||+|+.
T Consensus       268 ~~piILv~NK~DL~  281 (362)
T 1zcb_A          268 NVSIILFLNKTDLL  281 (362)
T ss_dssp             TSEEEEEEECHHHH
T ss_pred             CCCEEEEEEChhhh
Confidence            35899999999986

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.75  E-value=1.9e-05  Score=61.36  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36899999999999999999999754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.75  E-value=2.4e-05  Score=60.17  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999999754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.74  E-value=2e-05  Score=60.98  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35899999999999999999999754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.74  E-value=1.4e-05  Score=58.43  Aligned_cols=24  Identities=29%  Similarity=0.636  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...++|+|++|||||||++.|++.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            358999999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.74  E-value=2.1e-05  Score=61.18  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            36899999999999999999999754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.74  E-value=2e-05  Score=60.39  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36899999999999999999999854

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.73  E-value=1.6e-05  Score=59.13  Aligned_cols=24  Identities=13%  Similarity=0.328  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..++|+|++|||||||++.|++.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            468999999999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.73  E-value=2e-05  Score=60.50  Aligned_cols=25  Identities=40%  Similarity=0.407  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|+|||||++.|+|...
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999999754

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.73  E-value=8e-05  Score=55.25  Aligned_cols=81  Identities=7%  Similarity=-0.004  Sum_probs=47.5

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      ...+.|+|||+...     .    .....+    ..+|.+++++..+ ..+......++.+.+.-......++.+|+|+.
T Consensus        75 ~yD~viiD~~~~~~-----~----~~~~~l----~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-----V----ITSAAV----MVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS-----H----HHHHHH----HHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC-----H----HHHHHH----HHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            46789999998653     1    111222    2358899999887 44444456666665542112223568999999


Q ss_pred             CCCCCChhhHHHHhc
Q 026970          148 DELEDNDETLEDYLG  162 (230)
Q Consensus       148 D~~~~~~~~~~~~l~  162 (230)
                      +........+.++++
T Consensus       141 ~~~~~~~~~~~~~l~  155 (206)
T 4dzz_A          141 IEMATMLNVLKESIK  155 (206)
T ss_dssp             CTTEEEEHHHHHHHH
T ss_pred             CCCchHHHHHHHHHH
Confidence            864322334555554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.73  E-value=2.3e-05  Score=61.08  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            36899999999999999999999754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.72  E-value=2.1e-05  Score=61.00  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35899999999999999999999754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.72  E-value=1.9e-05  Score=59.49  Aligned_cols=25  Identities=24%  Similarity=0.220  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|+|||||++.|+|...
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5789999999999999999999754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.71  E-value=2.2e-05  Score=61.45  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            36899999999999999999999754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.71  E-value=1.6e-05  Score=60.11  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +....++|+|++|||||||++.|+|..
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            345789999999999999999998864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.71  E-value=1.9e-05  Score=56.60  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .-.++|+|++|+|||||++.|+|..
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            4689999999999999999999865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.71  E-value=2.6e-05  Score=57.30  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ++..|+|+|++|+||||+++.|.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3468999999999999999999986

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.70  E-value=2.5e-05  Score=59.52  Aligned_cols=26  Identities=27%  Similarity=0.426  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            35899999999999999999999753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.70  E-value=2.5e-05  Score=59.95  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35899999999999999999999754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.69  E-value=2.5e-05  Score=60.19  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35899999999999999999999754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.69  E-value=1.5e-05  Score=60.20  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +..++|+|++|+|||||++.|+|..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3689999999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.67  E-value=2.8e-05  Score=61.01  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++|+|++|+|||||++.|+|...+
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p   73 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYEPA   73 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            358999999999999999999997543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.67  E-value=2.9e-05  Score=60.49  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            36899999999999999999999754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.67  E-value=2.9e-05  Score=60.63  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            36899999999999999999999754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.66  E-value=2.9e-05  Score=60.48  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .-.++|+|++|+|||||++.|+|.
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999997

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.65  E-value=3.1e-05  Score=59.87  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|+|||||++.|+|...
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5899999999999999999999754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.65  E-value=2.9e-05  Score=59.83  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            35889999999999999999999754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.65  E-value=3e-05  Score=60.17  Aligned_cols=25  Identities=36%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .-.++|+|++|+|||||++.|+|..
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            3689999999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.64  E-value=2.3e-05  Score=58.70  Aligned_cols=27  Identities=33%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .....|+|+|++|+|||||++.|.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            455799999999999999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.64  E-value=2.6e-05  Score=59.93  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=22.4

Q ss_pred             CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970            6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.++..+.-+  .+..|+|+|++|||||||++.|.+.
T Consensus        14 ~l~~isl~i~--~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           14 GTENLYFQSM--RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             ---------C--CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eecceeccCC--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4444445443  3478999999999999999999764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.64  E-value=3.1e-05  Score=59.76  Aligned_cols=24  Identities=33%  Similarity=0.565  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .-.++|+|++|+|||||++.|+|.
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999996

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.61  E-value=3.8e-05  Score=55.62  Aligned_cols=26  Identities=31%  Similarity=0.521  Sum_probs=22.1

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ......|+|+|++|+||||+++.|.+
T Consensus         5 ~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            5 NHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            34457899999999999999999864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.60  E-value=8.6e-05  Score=61.07  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhcc--cc
Q 026970           67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGK--KI  136 (230)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~--~~  136 (230)
                      ++..+.+|||+|.....           .....++.+++++|+|+|+++-        ..........++......  ..
T Consensus       215 ~~v~l~iwDtaGQe~~r-----------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~  283 (402)
T 1azs_C          215 DKVNFHMFDVGGQRDER-----------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR  283 (402)
T ss_dssp             TTEEEEEEEECCSGGGG-----------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred             CCccceecccchhhhhh-----------hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence            56889999999975432           3345788999999999999840        011223344444444332  12


Q ss_pred             cceEEEEEeCCCCCC
Q 026970          137 FDYMIVVFTGGDELE  151 (230)
Q Consensus       137 ~~~~ivv~tk~D~~~  151 (230)
                      ..|+++|+||+|+..
T Consensus       284 ~~piiLvgNK~DL~~  298 (402)
T 1azs_C          284 TISVILFLNKQDLLA  298 (402)
T ss_dssp             SCCEEEEEECHHHHH
T ss_pred             CCeEEEEEEChhhhh
Confidence            458999999999753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.60  E-value=4.2e-05  Score=55.41  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +-.++++|++|+|||||++.+.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc
Confidence            46899999999999999997653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.58  E-value=3.3e-05  Score=57.76  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ++..|+|+|++|+|||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4478999999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.58  E-value=4.5e-05  Score=60.15  Aligned_cols=27  Identities=26%  Similarity=0.398  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .+-.++|+|++|+|||||++.|+|...
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            346899999999999999999999754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.57  E-value=4.4e-05  Score=59.34  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .-.++|+|++|+|||||++.|+|..
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999999985

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.55  E-value=4.5e-05  Score=57.08  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .+..|+|+|++||||||+++.|++..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34689999999999999999998764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.55  E-value=5.5e-05  Score=61.38  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence            36899999999999999999999754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.55  E-value=2.5e-05  Score=58.59  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      -.++|+|++|+|||||++.|+|. .+.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl-~p~   48 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQ   48 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence            57899999999999999999987 533

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.53  E-value=4.6e-05  Score=59.19  Aligned_cols=27  Identities=30%  Similarity=0.384  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .+...++|+|++|+|||||++.|+|..
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            344689999999999999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.52  E-value=6e-05  Score=61.06  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      -.++|+|++|+|||||++.|+|...+
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCC
Confidence            58899999999999999999997643

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.52  E-value=2.7e-05  Score=59.19  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=16.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh-CCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL-GRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~-~~~   43 (230)
                      +..++|+|++|||||||++.|+ +..
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4689999999999999999999 763

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.52  E-value=4.2e-05  Score=60.72  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            346899999999999999999998754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.48  E-value=5e-05  Score=60.19  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +...++|+|++|+|||||++.|+|.
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            3468999999999999999999864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.00094  Score=55.50  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+.-|+|.|+||+|||+|++++++.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3478999999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.48  E-value=7.7e-05  Score=60.51  Aligned_cols=26  Identities=31%  Similarity=0.359  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence            35889999999999999999999754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.47  E-value=7.9e-05  Score=60.81  Aligned_cols=25  Identities=40%  Similarity=0.486  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|+|||||++.|+|...
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCC
Confidence            5889999999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.47  E-value=8e-05  Score=60.49  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCC
Confidence            35889999999999999999999754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.46  E-value=6.2e-05  Score=59.98  Aligned_cols=27  Identities=19%  Similarity=0.127  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..+..|+|+|++|||||||++.|.|..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            456899999999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.46  E-value=7.8e-05  Score=60.36  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            35889999999999999999999854

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.46  E-value=6.6e-05  Score=55.76  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +..|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3689999999999999999998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.44  E-value=9.1e-05  Score=60.38  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCC
Confidence            36889999999999999999999764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.44  E-value=6.5e-05  Score=55.77  Aligned_cols=26  Identities=27%  Similarity=0.555  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+|+|++|+||||+++.|.+.
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999999754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.43  E-value=8.7e-05  Score=56.96  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh---CCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL---GRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~---~~~~   44 (230)
                      +..|+|+|++||||||+++.|.   |...
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~   55 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH   55 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            4689999999999999999999   7654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.43  E-value=5.2e-05  Score=55.91  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .+++++|++|+|||||++.|+|..
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            368999999999999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0011  Score=55.00  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .++-|+|.|+||+|||+|++++++.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999854

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.41  E-value=9.8e-05  Score=60.24  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|+|||||++.|+|...
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCC
Confidence            5889999999999999999999854

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.41  E-value=7.2e-05  Score=60.46  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      -.++|+|++|+|||||++.|+|...
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCC
Confidence            5899999999999999999999754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.40  E-value=2.9e-05  Score=57.11  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      -|+|+||+|||||||++.|+..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999999754

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.0015  Score=53.57  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.-|+|.|+||+|||+|++++++.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            467999999999999999999864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.39  E-value=0.00011  Score=56.68  Aligned_cols=27  Identities=19%  Similarity=0.291  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh---CCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL---GRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~---~~~~   44 (230)
                      ....|+|+|++||||||+++.|.   |...
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~   55 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRL   55 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence            45789999999999999999998   7654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.38  E-value=0.00021  Score=57.93  Aligned_cols=73  Identities=12%  Similarity=0.108  Sum_probs=46.5

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC-------CC-CCHHHHHHHHHHHHHhccc--cc
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SR-FSQEEEAALHSLQTLFGKK--IF  137 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-------~~-~~~~~~~~l~~l~~~~~~~--~~  137 (230)
                      ...+.+|||+|.....           .....++++++++|+|+|++       +. -......+..++.......  ..
T Consensus       182 ~v~l~iwDtaGQe~~r-----------~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNER-----------RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             --EEEEEEECCSTTGG-----------GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             ceeeEEEECCCchhhh-----------HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            3578999999976433           33347889999999999986       11 1112233444444443321  24


Q ss_pred             ceEEEEEeCCCCCC
Q 026970          138 DYMIVVFTGGDELE  151 (230)
Q Consensus       138 ~~~ivv~tk~D~~~  151 (230)
                      .|+++|+||+|+..
T Consensus       251 ~piiLvgNK~DL~~  264 (354)
T 2xtz_A          251 TSFMLFLNKFDIFE  264 (354)
T ss_dssp             CEEEEEEECHHHHH
T ss_pred             CeEEEEEECcchhh
Confidence            58999999999753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.37  E-value=7.7e-05  Score=54.75  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..++|+|++|+||||+++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4689999999999999999975

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.35  E-value=6.7e-05  Score=60.78  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            35889999999999999999999754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0019  Score=53.41  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+.-|+|.|++|+|||+|++++++.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHH
Confidence            3468999999999999999999865

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.33  E-value=8.7e-05  Score=53.53  Aligned_cols=23  Identities=39%  Similarity=0.702  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..|+|+|++|+||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.32  E-value=0.00013  Score=58.09  Aligned_cols=26  Identities=19%  Similarity=0.220  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+|+|++|+|||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44579999999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.32  E-value=0.00017  Score=61.71  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      +.-.++|+|++|+|||||++.|+|...+.
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~   52 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEIIPN   52 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            34689999999999999999999975433

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.30  E-value=0.00013  Score=54.14  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+..|+|+|++|+||||+++.|.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.29  E-value=0.00015  Score=59.49  Aligned_cols=26  Identities=38%  Similarity=0.461  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCC
Confidence            36899999999999999999999753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.29  E-value=0.00014  Score=54.06  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+..|+|+|++||||||+++.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4468999999999999999999753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.28  E-value=0.00012  Score=59.53  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ....++|+|++|+|||||++.|++.-
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34689999999999999999999874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.28  E-value=0.0025  Score=48.88  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..|+|.|++|+|||++++++...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999999753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.28  E-value=0.00013  Score=59.14  Aligned_cols=25  Identities=36%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .-.|+++|++|+|||||+++|+|.-
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3589999999999999999998753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.27  E-value=0.00013  Score=55.02  Aligned_cols=25  Identities=16%  Similarity=0.286  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..-.++|+|++|+|||||++.|++.
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.27  E-value=0.00016  Score=57.68  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...+..|+|+|++|||||||++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345579999999999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.26  E-value=0.0002  Score=61.41  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .+.-.++|+|++|+|||||++.|+|...+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p   73 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQLIP   73 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44568999999999999999999997543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.00022  Score=61.92  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS   47 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~   47 (230)
                      .+.-.++|+|++|+|||||++.|+|...+..
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~  131 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL  131 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence            3457899999999999999999999765433

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.22  E-value=0.00033  Score=52.12  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .....|+|+|++|+||||+.+.|.+.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.22  E-value=0.00013  Score=58.58  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ...++++|++|+|||||++.|+|.-
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999999874

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.20  E-value=0.00029  Score=52.44  Aligned_cols=29  Identities=21%  Similarity=0.326  Sum_probs=23.6

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           13 TSPSNGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        13 ~~~~~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +++...+..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            4 TDDKKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             TCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34444567899999999999999999864

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0016  Score=54.24  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+.-|+|.|++|+|||+|++++++.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            4478999999999999999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.20  E-value=0.00017  Score=58.88  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +...++|+|++|+|||||++.|++.
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4468999999999999999999875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0011  Score=55.05  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+.-|+|.|+||+|||+|++++++.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3478999999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.19  E-value=0.0002  Score=54.40  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+|.|++|+||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45579999999999999999999865

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.19  E-value=0.00024  Score=52.59  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +...|+|+|++|+||||+.+.|..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999974

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.18  E-value=0.00024  Score=52.82  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999986

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.18  E-value=8.1e-05  Score=53.97  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..++|+|++|+|||||++.|++..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.18  E-value=0.00027  Score=61.39  Aligned_cols=30  Identities=23%  Similarity=0.334  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      .+.-.++|+|++|+|||||++.|+|...+.
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~  144 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPN  144 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence            445789999999999999999999976543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.18  E-value=0.00014  Score=52.88  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ...++|+|++|+|||||++++++..
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.17  E-value=0.00017  Score=61.32  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ...++|+|+||||||||+++|++.-
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3569999999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.15  E-value=0.00021  Score=59.24  Aligned_cols=26  Identities=31%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +.-.|+|+|++|+|||||+++|++.-
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            34689999999999999999998753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.15  E-value=0.0002  Score=53.95  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+|+|+|++|+||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.14  E-value=0.00018  Score=58.65  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..+++|+|++|+|||||++.|+|..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.14  E-value=0.00027  Score=52.43  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+|+|++|+||||+++.|.+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.00017  Score=60.54  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ...+++|+|++|+|||||++.|+|...
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            347899999999999999999988653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.09  E-value=0.00025  Score=61.55  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++++|++|+|||||++.|+|...
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            346899999999999999999998754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.09  E-value=0.00017  Score=50.98  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ....++|+|++|+|||||++.+.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998753

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.09  E-value=0.00023  Score=52.75  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999976

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.09  E-value=0.0023  Score=49.83  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...++|.|++|+|||++++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.08  E-value=0.00035  Score=60.52  Aligned_cols=27  Identities=41%  Similarity=0.541  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++++|++|+|||||++.|+|...
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            346899999999999999999998754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.07  E-value=0.00037  Score=60.34  Aligned_cols=27  Identities=41%  Similarity=0.522  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++++|++|+|||||++.|+|...
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.07  E-value=0.00035  Score=50.73  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.++++|++|+|||||++.|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            68999999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.07  E-value=0.00038  Score=54.85  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...+..|+|+|++|+|||||++.|.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.06  E-value=0.00039  Score=50.23  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999975

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.05  E-value=0.00047  Score=50.37  Aligned_cols=25  Identities=20%  Similarity=0.441  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...+|+|+|.+|+||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3478999999999999999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.05  E-value=0.00043  Score=59.29  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++|+|++|+|||||++.|+|...+
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            357899999999999999999997543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.04  E-value=0.00036  Score=50.06  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l   39 (230)
                      ..|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.02  E-value=0.00038  Score=49.90  Aligned_cols=22  Identities=18%  Similarity=0.145  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.01  E-value=0.00049  Score=59.77  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45899999999999999999999754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.00  E-value=0.0005  Score=50.72  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+|+|.+||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999999754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.00  E-value=0.00051  Score=58.86  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++|+|++|+|||||++.|+|...+
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p  338 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVEEP  338 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            458999999999999999999997543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.00043  Score=51.27  Aligned_cols=24  Identities=33%  Similarity=0.648  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...|+|+|.+||||||+.+.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998643

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.98  E-value=0.00044  Score=50.23  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+|+|++|+|||||+.+|.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999998653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.98  E-value=0.00049  Score=49.74  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999975

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.97  E-value=0.00036  Score=56.41  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ..-+++|+|++|+|||||++.|+|...
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346899999999999999999998743

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.96  E-value=0.013  Score=53.34  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=19.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l   39 (230)
                      ...++|+|++|+||||+++.+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            368999999999999999998

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.95  E-value=0.00027  Score=56.42  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      .+.++|+|.+|||||||+|.|++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4688999999999999999999763

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.95  E-value=0.00035  Score=58.80  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      -.++|+|++|+|||||++.|+|..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            588999999999999999998754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.94  E-value=0.00033  Score=60.55  Aligned_cols=27  Identities=37%  Similarity=0.337  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++++|++|+|||||++.|+|...
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            346899999999999999999998754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.93  E-value=0.00083  Score=49.68  Aligned_cols=27  Identities=15%  Similarity=0.396  Sum_probs=22.5

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +......|+|.|.+||||||+.+.|..
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            344557899999999999999998863

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.93  E-value=0.0032  Score=57.09  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=26.1

Q ss_pred             CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+.++..+....  ...++|+|++|+|||||++.+.+
T Consensus       660 ~~V~ndvsl~~~~--g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          660 QYVPNNTDLSEDS--ERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SSCCEEEEECTTS--CCEEEEESCCCHHHHHHHHHHHH
T ss_pred             ceecccccccCCC--CeEEEEECCCCCchHHHHHHHHH
Confidence            3345555554333  36899999999999999999854

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.93  E-value=0.00056  Score=49.79  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      +..|+|+|.+||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999986

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.93  E-value=0.00063  Score=49.76  Aligned_cols=23  Identities=13%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..|++.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999863

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.92  E-value=0.0065  Score=45.22  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=42.9

Q ss_pred             CeEEEEEeCCCC-CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEe
Q 026970           68 GQVVNVIDTPGL-FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFT  145 (230)
Q Consensus        68 ~~~~~liDtPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~t  145 (230)
                      ...+.|+|||+. ...         .....    ...+|.+++++.++ ..+.. ....++.+.+. .   ..++.+|+|
T Consensus        67 ~yD~viiD~p~~~~~~---------~~~~~----l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-~---~~~~~vv~N  128 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE---------DLEAL----ADGCDLLVIPSTPD-ALALDALMLTIETLQKL-G---NNRFRILLT  128 (209)
T ss_dssp             GCSEEEEEEECCCSSS---------HHHHH----HHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT-C---SSSEEEEEC
T ss_pred             cCCEEEEeCCCCcCcH---------HHHHH----HHHCCEEEEEecCC-chhHHHHHHHHHHHHhc-c---CCCEEEEEE
Confidence            457899999986 431         11122    23458899988776 22222 13344444442 1   235789999


Q ss_pred             CCCCCC-CChhhHHHHhc
Q 026970          146 GGDELE-DNDETLEDYLG  162 (230)
Q Consensus       146 k~D~~~-~~~~~~~~~l~  162 (230)
                      +.+... .....+.++++
T Consensus       129 ~~~~~~~~~~~~~~~~l~  146 (209)
T 3cwq_A          129 IIPPYPSKDGDEARQLLT  146 (209)
T ss_dssp             SBCCTTSCHHHHHHHHHH
T ss_pred             ecCCccchHHHHHHHHHH
Confidence            998653 22334555554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.91  E-value=0.016  Score=46.21  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +...|+|.|++|+|||+|++++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            3468999999999999999999854

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.91  E-value=0.00037  Score=54.42  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026970           22 VVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~   42 (230)
                      ++|+|++|+|||||+++|++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.0007  Score=58.78  Aligned_cols=28  Identities=21%  Similarity=0.367  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKS   47 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~   47 (230)
                      -.++|+|++|+|||||++.|+|...+..
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~  406 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDE  406 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSB
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            3589999999999999999999865443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.88  E-value=0.00064  Score=49.61  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.88  E-value=0.00092  Score=48.74  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+|+|.+|+||||+++.|...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.88  E-value=0.00064  Score=49.46  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ...|+++|++|+||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999863

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.86  E-value=0.0005  Score=59.55  Aligned_cols=27  Identities=33%  Similarity=0.316  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++++|++|+|||||++.|+|...
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            346899999999999999999998754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.86  E-value=0.0014  Score=52.44  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +.|+|+|++|+|||||...|...-
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            579999999999999999998654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.86  E-value=0.0033  Score=50.55  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      .++|.|++|+||||+++.|.+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999998773

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.85  E-value=0.00074  Score=53.10  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+..|+|.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999963

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.83  E-value=0.00091  Score=47.18  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      ...+|+|++|+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            466899999999999999975

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.80  E-value=0.0008  Score=49.12  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.80  E-value=0.00064  Score=51.18  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...++|+|++|+|||||++.|++.
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999999843

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.79  E-value=0.00054  Score=52.66  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      -++|+|++|+|||||+++|.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.79  E-value=0.001  Score=49.12  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+..|+|.|.+|+||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999999863

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.79  E-value=0.00088  Score=48.96  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      +..|+|.|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999885

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.78  E-value=0.0008  Score=49.61  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.78  E-value=0.00093  Score=48.95  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.78  E-value=0.00092  Score=48.18  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+.++++|.+|+|||||++.|+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            368999999999999999998753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.77  E-value=0.001  Score=48.22  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..|+|+|.+|+||||+.+.|.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.76  E-value=0.001  Score=49.38  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            36899999999999999999964

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.75  E-value=0.00096  Score=50.09  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998853

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.75  E-value=0.00065  Score=56.64  Aligned_cols=26  Identities=19%  Similarity=0.143  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..-+++|+|++|+|||||++.|+|..
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44689999999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.75  E-value=0.0011  Score=50.69  Aligned_cols=23  Identities=17%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      .+.+|+|+|++||||||+.+.|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999999986

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.75  E-value=0.0011  Score=48.13  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      ...|+++|.+|+||||+.+.|.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            4679999999999999999987

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.74  E-value=0.00074  Score=53.15  Aligned_cols=26  Identities=19%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..-.++|+|++|+|||||++.|++..
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34588999999999999999987653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.74  E-value=0.0011  Score=48.98  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.74  E-value=0.00053  Score=62.37  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +-+++|+|++|+|||||++.|+|...
T Consensus       699 GeivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          699 SSRIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             TCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35899999999999999999999754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.73  E-value=0.0097  Score=53.19  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+.-|+|.|++|+|||+|++++++.
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4478999999999999999999865

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.72  E-value=0.001  Score=54.14  Aligned_cols=20  Identities=35%  Similarity=0.429  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~   40 (230)
                      ..+|+|++|+||||++++|+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56799999999999999987

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.71  E-value=0.00095  Score=49.86  Aligned_cols=20  Identities=35%  Similarity=0.710  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~   40 (230)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.70  E-value=0.0015  Score=49.13  Aligned_cols=26  Identities=15%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...+.|+|+|+|||||+|....|...
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34467888999999999999888643

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.70  E-value=0.0097  Score=46.03  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....++|.|++|+|||+++.++...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4478999999999999999999753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.69  E-value=0.0012  Score=49.22  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+..|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999874

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.69  E-value=0.00074  Score=54.23  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..++|+|++|+|||||++.|++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            468999999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.68  E-value=0.0016  Score=47.53  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.67  E-value=0.0011  Score=49.63  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.66  E-value=0.001  Score=49.95  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999853

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.66  E-value=0.00092  Score=54.57  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+..++++|++|+|||||++.|.+.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3468999999999999999999863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.66  E-value=0.0011  Score=49.97  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      ...|+|+|.+||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999986

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.66  E-value=0.0014  Score=49.14  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999964

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.65  E-value=0.00079  Score=52.53  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      -++|+|++|+|||||+++|.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.65  E-value=0.00099  Score=48.07  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      +|+|+|++|+||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.64  E-value=0.016  Score=46.95  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.++|.|++|+||||+++.+.+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.64  E-value=0.00077  Score=60.33  Aligned_cols=37  Identities=19%  Similarity=0.190  Sum_probs=27.7

Q ss_pred             CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970            4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..+.++..+.   .....++|+|++|+|||||++.+.|..
T Consensus       595 ~~vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          595 PFIANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCCCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceeeeccccc---CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            3345555555   344689999999999999999998753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.64  E-value=0.0012  Score=50.84  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|+|++|+|||||.+.|..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.62  E-value=0.0013  Score=48.34  Aligned_cols=23  Identities=17%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..|+|.|.+|+||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.62  E-value=0.00089  Score=51.55  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+..|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.60  E-value=0.0097  Score=48.70  Aligned_cols=24  Identities=29%  Similarity=0.584  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...|+|.|++|+|||+|+.++...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.59  E-value=0.0032  Score=49.77  Aligned_cols=65  Identities=12%  Similarity=-0.022  Sum_probs=42.4

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhcccccceEEEEEeC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG  146 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk  146 (230)
                      ..+.+|||  ...+.           .....++.++|++++|+|++++. +... ..++..+..     ...|+++|+||
T Consensus        63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK  124 (301)
T 1u0l_A           63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINK  124 (301)
T ss_dssp             SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECC
T ss_pred             CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeH
Confidence            37899999  32222           11225678899999999998654 3332 344443333     13589999999


Q ss_pred             CCCCC
Q 026970          147 GDELE  151 (230)
Q Consensus       147 ~D~~~  151 (230)
                      +|+.+
T Consensus       125 ~DL~~  129 (301)
T 1u0l_A          125 MDLYD  129 (301)
T ss_dssp             GGGCC
T ss_pred             HHcCC
Confidence            99875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.59  E-value=0.0012  Score=49.34  Aligned_cols=24  Identities=13%  Similarity=-0.031  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....++++|++|+|||||+..|++
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345889999999999999999986

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.58  E-value=0.00095  Score=51.37  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ...|+|+|.+|+||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999965

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.58  E-value=0.002  Score=50.43  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ..+..|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999986

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.57  E-value=0.0028  Score=47.61  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..++|.|++|+||||+++.+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998643

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.54  E-value=0.0012  Score=47.89  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ++|+|+|.+|+||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998853

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.51  E-value=0.0012  Score=60.19  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +-+++|+|++|+|||||++.|+|.
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999954

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.50  E-value=0.0018  Score=49.73  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .....|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998854

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.50  E-value=0.0013  Score=49.80  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....++|+|++|+|||||+..|++.
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3468899999999999999999873

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.50  E-value=0.0019  Score=46.69  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...++|.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.50  E-value=0.0019  Score=49.93  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            36899999999999999998863

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.49  E-value=0.0019  Score=48.90  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999863

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.49  E-value=0.0017  Score=46.27  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999854

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.48  E-value=0.0015  Score=50.14  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..|+|.|++|+||||++++|.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.47  E-value=0.0021  Score=47.93  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+..|+++|.+|+||||+.+.|.+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.47  E-value=0.0012  Score=47.74  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=15.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      +..|+|.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999986

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.47  E-value=0.0028  Score=48.03  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .....|+|.|.+|+||||+++.|...
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            35578999999999999999998754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.46  E-value=0.00016  Score=54.79  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .++|+|++|+|||||+++|++...
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcccc
Confidence            457899999999999999988654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.45  E-value=0.0016  Score=46.71  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999863

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.45  E-value=0.0017  Score=48.44  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.45  E-value=0.00072  Score=50.34  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      .|+|.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.43  E-value=0.0019  Score=47.15  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.43  E-value=0.00048  Score=56.90  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~   40 (230)
                      .++|+|++|+|||||+++|.
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            88999999999999998884

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.42  E-value=0.0021  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      +..|+|.|++|+||||+.+.|.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999987

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.41  E-value=0.0012  Score=58.81  Aligned_cols=25  Identities=20%  Similarity=0.098  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ...++|+|++|+|||||++.+.|..
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            4689999999999999999998754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.40  E-value=0.002  Score=48.01  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      +|+|+|+|||||+|....|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999888643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.39  E-value=0.0025  Score=47.32  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      ...+|+|++|+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            567889999999999999874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.36  E-value=0.0023  Score=45.69  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998853

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.35  E-value=0.0026  Score=48.29  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .....|+|+|.+|+||||+.+.|.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999999874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.33  E-value=0.0021  Score=60.57  Aligned_cols=27  Identities=37%  Similarity=0.417  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-.++++|++|+|||||++.|+|...
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~  441 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRLYD  441 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999998753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.32  E-value=0.0024  Score=48.10  Aligned_cols=20  Identities=30%  Similarity=0.702  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~   40 (230)
                      .|+|.|.+||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999985

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.31  E-value=0.0016  Score=61.65  Aligned_cols=26  Identities=31%  Similarity=0.307  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ++-+|+++|++|+|||||++.|++--
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCc
Confidence            34689999999999999999999864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.30  E-value=0.0026  Score=46.89  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..++|.|++|+|||+|+.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.28  E-value=0.0013  Score=56.31  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +...|+|+|.+|||||||++.|.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            45789999999999999999998763

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.28  E-value=0.0059  Score=47.78  Aligned_cols=50  Identities=12%  Similarity=0.141  Sum_probs=34.0

Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      +.+......+|++++|+|+.++.+.....+    .+.++   ..|.++|+||+|+.+
T Consensus        15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~---~kp~ilVlNK~DL~~   64 (282)
T 1puj_A           15 REVTEKLKLIDIVYELVDARIPMSSRNPMI----EDILK---NKPRIMLLNKADKAD   64 (282)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCS---SSCEEEEEECGGGSC
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHC---CCCEEEEEECcccCC
Confidence            344445567799999999986665443222    22233   358999999999986

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.27  E-value=0.0021  Score=50.17  Aligned_cols=24  Identities=25%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....++|+|++|+|||||+..+++
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            446899999999999999999875

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.27  E-value=0.0038  Score=51.21  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.|+|.|+||+|||||...|..
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            6789999999999999988864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.26  E-value=0.0029  Score=46.60  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....|+|.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.26  E-value=0.0028  Score=47.47  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999853

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.23  E-value=0.0031  Score=47.48  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....++|.|++|+|||++++.+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.23  E-value=0.0028  Score=59.93  Aligned_cols=27  Identities=37%  Similarity=0.439  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++..++++|++|+|||||++.|+|.-.
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccccc
Confidence            346899999999999999999998753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.22  E-value=0.0042  Score=48.94  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...++|.|++|+|||++++.|.+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            357999999999999999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.19  E-value=0.0025  Score=45.94  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...++|.|++|+|||+++..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.18  E-value=0.004  Score=49.22  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ++.|+|+|+||||||||...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            367899999999999999998643

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.17  E-value=0.0036  Score=46.20  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...|+|+|++|+|||||...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999999755

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.16  E-value=0.0038  Score=49.49  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+.|+|+|+||+|||||...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            367899999999999999999744

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.15  E-value=0.0036  Score=50.31  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      ...+|+|++|+||||++.+|+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999974

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.14  E-value=0.0036  Score=49.25  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.13  E-value=0.0075  Score=49.90  Aligned_cols=26  Identities=35%  Similarity=0.300  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+++|.+||||||+.+.|...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            34578899999999999999998743

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.12  E-value=0.0019  Score=56.82  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      .-.++|+|++|+|||||++.++
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHH
Confidence            3578999999999999998764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.09  E-value=0.0029  Score=52.56  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      +..++|+|++|+|||||+++|.+..
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhh
Confidence            3578999999999999999987643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.09  E-value=0.0038  Score=46.08  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      .|+|.|.+|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999854

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.08  E-value=0.0046  Score=48.68  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....++|.|++|+|||++++.+...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999887644

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.06  E-value=0.0034  Score=50.88  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ...+|+|++|+||||++++|.+
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            3789999999999999999874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.05  E-value=0.0041  Score=49.06  Aligned_cols=24  Identities=25%  Similarity=0.464  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..|+|.|++|+|||+++++|.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            367999999999999999999854

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.05  E-value=0.0042  Score=43.34  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..|++.|++|+|||++..+|...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            56899999999999999999754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.05  E-value=0.0042  Score=48.71  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...++|.|++|+|||++++++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            468999999999999999999753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.04  E-value=0.004  Score=58.78  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      ++-+++++|++|+|||||++.|+|...
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            346899999999999999999998754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.03  E-value=0.0044  Score=49.39  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..|+|+|++|+|||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988643

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.01  E-value=0.0046  Score=48.65  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..++|.|++|+|||+|.+++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356777899999999999999754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.00  E-value=0.0031  Score=50.98  Aligned_cols=26  Identities=15%  Similarity=0.249  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ....+.|+|++|+|||||++.+++..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44689999999999999999998753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.00  E-value=0.0043  Score=49.77  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            58999999999999999888643

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.99  E-value=0.0092  Score=48.18  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..++|.|++|+||||+++.+...
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~   61 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKG   61 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999988643

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=95.97  E-value=0.0069  Score=45.13  Aligned_cols=76  Identities=9%  Similarity=0.048  Sum_probs=34.6

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccceEEEEEeC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK---IFDYMIVVFTG  146 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ivv~tk  146 (230)
                      ++....+||-.  .....   ..++.....++.+.|++|||+|..++-..+.+..+..+...+...   ...|++|+.||
T Consensus        97 k~~~~~~~~~~--~~GGQ---~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANK  171 (227)
T 3l82_B           97 KMFSRHNEGDD--QQGSR---YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCI  171 (227)
T ss_dssp             -------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEE
T ss_pred             hcccccCCCcc--ccCcH---HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCC
Confidence            35566666521  11122   344455556777889999999996542222444444444444332   23478888898


Q ss_pred             C-CCC
Q 026970          147 G-DEL  150 (230)
Q Consensus       147 ~-D~~  150 (230)
                      . |..
T Consensus       172 qqDlp  176 (227)
T 3l82_B          172 SQGDV  176 (227)
T ss_dssp             SSTTS
T ss_pred             CcCcc
Confidence            5 553

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.95  E-value=0.0024  Score=50.27  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=17.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.92  E-value=0.004  Score=46.22  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+++.|++|+||||++.+|+.
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999888764

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.92  E-value=0.0034  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+|+|++|+|||||+.+|..
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHH
Confidence            778999999999999999873

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.91  E-value=0.0036  Score=53.44  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l   39 (230)
                      ..-.++|+|++|+|||||++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            3468999999999999999994

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.83  E-value=0.0058  Score=49.26  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +....|+|+|++|+||||+.+.|.+.
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            34468999999999999999887653

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.80  E-value=0.0045  Score=53.10  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....++|+|++|+|||||+++|.+.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3468999999999999999999765

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.78  E-value=0.0044  Score=56.95  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ...++|+|++|+|||||++.+ |..
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHH
Confidence            468999999999999999998 543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.75  E-value=0.012  Score=53.27  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..++|+|++|+|||++++.+...
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999999865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.73  E-value=0.0069  Score=45.87  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=19.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ..-.++++|++|+|||||+..++
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34578999999999999976664

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.73  E-value=0.0072  Score=49.04  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l   39 (230)
                      ....+|+|+|.+|+|||||++.+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            34589999999999999999876

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.71  E-value=0.0049  Score=49.42  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      .++|.|++|+||||+++.+++.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998765

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.70  E-value=0.0059  Score=50.04  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....++++|++|+||||+++.|+..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHH
Confidence            3468899999999999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.68  E-value=0.0041  Score=43.32  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            56899999999999999988654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.68  E-value=0.0072  Score=44.67  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      .++|.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-25
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-12
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	5e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	6e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	6e-05
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	0.004

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 98.0 bits (243), Expect = 2e-25
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 5/161 (3%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 70
            L        T++++G+ G GKS+T NSI+G R        S       + R+    G  
Sbjct: 24  NLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFT 81

Query: 71  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQ 129
           +N+IDTPGL +    ++     I     +    I  +L V  +   R    ++    ++ 
Sbjct: 82  LNIIDTPGLIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAIT 139

Query: 130 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170
             FGK I++  IV  T       +    +++  +     L+
Sbjct: 140 DSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 180

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (155), Expect = 1e-12
 Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 26/213 (12%)

Query: 11  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDGQ 69
            L    +    V + G TG+GKS+  N++ G    +  A+ +GV     E       +  
Sbjct: 48  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 107

Query: 70  VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 129
            V   D PG+   +   +   +++                +    +RF + +     ++ 
Sbjct: 108 NVVFWDLPGIGSTNFPPDTYLEKMKFY--------EYDFFIIISATRFKKNDIDIAKAIS 159

Query: 130 TLFGKKIFDYMIVVFTGGDELEDND----------ETLEDYLGRECPKPLKKGATKLRDQ 179
               K+       V T  D    N+          E +   +   C    ++    + + 
Sbjct: 160 M-MKKEF----YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE--NGIAEP 212

Query: 180 QFEVDSLKGYSKREISELKEQMHKSYEDQLKRI 212
              + S K     +   L +++        +  
Sbjct: 213 PIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 245

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 16/187 (8%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
            V LVG    GKS   + +   +     A     T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140
           + +     +G + ++ I      I  V+ +  +  R   ++   ++   + +  ++ +  
Sbjct: 61  EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQ 200
            ++     ++ +  E LE +  +                 F + ++       + EL  +
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD----------YPVFPISAVTR---EGLRELLFE 166

Query: 201 MHKSYED 207
           +    E+
Sbjct: 167 VANQLEN 173

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 20/182 (10%)

Query: 22  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81
           V LVG    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 82  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141
            ++  + +G E ++ I   +  ++ +              +        L  +     + 
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISELKEQM 201
            V               D L  E  K L     +       V +L G     +  LKE +
Sbjct: 122 KV---------------DLLEEEAVKALADALAREGLAVLPVSALTGAG---LPALKEAL 163

Query: 202 HK 203
           H 
Sbjct: 164 HA 165

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 19/191 (9%), Positives = 58/191 (30%), Gaps = 11/191 (5%)

Query: 21  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
           T++  GR+  GKS     + G++  + +             +                  
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61

Query: 81  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY- 139
           +     +      ++      D    V+   +      + E+     +   F + + +  
Sbjct: 62  EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 140 --MIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQFEVDSLKGYSKREISEL 197
              IV     D++++  E +     +      +   +++      + +  G +   I  L
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEK-----FEVPLSEIDKVFIPISAKFGDN---IERL 173

Query: 198 KEQMHKSYEDQ 208
           K ++ +   ++
Sbjct: 174 KNRIFEVIRER 184

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 7   DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQR 62
            D      P   ++T V  G++G GKS+  N+I      +    S     G  +T  ++ 
Sbjct: 85  QDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL 144

Query: 63  TVLKDGQVVNVIDTPGL 79
                G    V DTPG 
Sbjct: 145 IHTSGGL---VADTPGF 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.77
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.77
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.73
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.73
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.71
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.7
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.68
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.67
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.67
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.66
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.66
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.66
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.65
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.65
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.65
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.63
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.63
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.62
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.61
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.61
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.61
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.6
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.6
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.59
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.59
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.59
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.58
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.58
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.58
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.58
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.57
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.57
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.55
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.53
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.53
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.52
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.52
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.52
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.51
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.51
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.5
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.5
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.49
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.48
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.47
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.46
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.45
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.42
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.4
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.34
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.34
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.25
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.24
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.19
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.14
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.14
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.12
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.11
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.06
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.95
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.92
d1okkd2	207	GTPase domain of the signal recognition particle r	98.89
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.89
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.88
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.85
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.85
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.8
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.63
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.43
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.88
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.88
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.85
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.81
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.8
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.79
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.77
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.77
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.77
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.76
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.73
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.73
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.72
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.71
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.71
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.7
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.7
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.68
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.68
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.68
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.67
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.6
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.59
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.58
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.58
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.51
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.51
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.51
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.47
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.44
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.43
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.42
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.41
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.39
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.39
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.39
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.38
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.35
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.33
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.33
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.32
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.31
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.31
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.29
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.27
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.26
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.24
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.23
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.23
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.23
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.23
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.23
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.21
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.19
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.19
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.16
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.16
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.14
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.13
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.11
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.09
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.08
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.07
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.06
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.02
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.02
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.0
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.99
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.98
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.97
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.94
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.88
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.87
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.87
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.78
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.78
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.77
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.77
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.75
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.71
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.69
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.67
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.63
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.61
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.6
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.59
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.51
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.46
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.3
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.27
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.26
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.23
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.21
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.18
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.17
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.16
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.13
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.13
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.07
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.07
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.06
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.06
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.05
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.04
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.99
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.9
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.83
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.79
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.75
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.62
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.59
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.54
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.52
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.49
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.27
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.25
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.24
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.21
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.09
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.09
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.85
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.8
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.53
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.51
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.43
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.42
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.39
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.34
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.25
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.0
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.99
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.86
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.74
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.73
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.73
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.69
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.61
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.56
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.56
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.54
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.31
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.16
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.89
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.5
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.12
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.09
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.02
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.53
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.23
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.03
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	90.88
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.12
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.38
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.84
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.3
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	86.67
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	85.96
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.84
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.46
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.34
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.27
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.05
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	82.99
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	81.9
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	81.53
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.43
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.32
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.2
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.09
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.06

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.92  E-value=3.2e-24  Score=165.89  Aligned_cols=143  Identities=23%  Similarity=0.322  Sum_probs=114.7

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ...++|+|+|.+|+|||||+|+|+|...+.+.. ..++|..+..+.... .+..+.|+||||+.++....+.....+..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecC-CCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            345899999999999999999999998876553 346676666665554 788999999999998765555554444444


Q ss_pred             HHhhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970           97 IGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  163 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~  163 (230)
                      .  ....+|+++||++++ .+++..+...++.+.+.||..+++++++|+||+|...+++..+++|+..
T Consensus       108 ~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~  173 (257)
T d1h65a_         108 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK  173 (257)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred             H--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh
Confidence            3  234679999999875 3799999999999999999999999999999999997667778887764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.7e-20  Score=136.08  Aligned_cols=125  Identities=22%  Similarity=0.222  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+|+|.+|||||||+|+|+|....... ...++|......... ..+..+.++||||+.......   ...+......
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~-~~~~tt~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~---~~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILT-EGRRQIVFVDTPGLHKPMDAL---GEFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEE-ETTEEEEEEECCCCCCCCSHH---HHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec-ccCCcccccccceee-eeeeeeeeccccccccccccc---chhccccccc
Confidence            57999999999999999999998753332 233445554444444 367899999999997644322   2334444455


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ....+|++++|+|++++++..+..+.+.++....   ..|+++|+||+|+...
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~---~~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY  130 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS
T ss_pred             ccccccceeeeechhhhhcccccchhhheecccc---chhhhhhhcccccccC
Confidence            6778999999999988888888777777766433   3489999999998763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=2.5e-18  Score=125.87  Aligned_cols=120  Identities=21%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH----HHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF----VGKEIVKC   96 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~----~~~~~~~~   96 (230)
                      .|+|+|.+|||||||+|+|+|.....  ...+++|.....  +.   ...+.++||||++........    +...+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~--~~~~g~T~~~~~--~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRR--GKRPGVTRKIIE--IE---WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSS--SSSTTCTTSCEE--EE---ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee--eCCCCEeecccc--cc---cccceecccCCceeccccccccccccchhhhhh
Confidence            68999999999999999999987532  234455655432  22   234678999998765554433    33344555


Q ss_pred             HHhhcCCccEEEEEEeCCC-----------CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRS-----------RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~-----------~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      +......+|++++|+|+..           .....+...++.+.+.     ..|+++|+||+|+..+
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-----~~p~iiv~NK~D~~~~  136 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKIKN  136 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGCSC
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-----CCCEEEEEeeeehhhh
Confidence            5666678899999999752           3444455566655543     3489999999998863

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.2e-18  Score=127.30  Aligned_cols=125  Identities=16%  Similarity=0.121  Sum_probs=79.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      .|+|+|.+|||||||+|+|+|......  ...+.|....+.......+..+.++||||+.............+.    ..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l----~~   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----RH   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----HH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHH----HH
Confidence            589999999999999999999875333  233445555554444446778999999998753322211112222    23


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+++++++++...........+..++..........|+++|+||+|+..
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~  127 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  127 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence            456689999999864433333344444433222223458999999999986

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=2.2e-17  Score=122.04  Aligned_cols=135  Identities=20%  Similarity=0.264  Sum_probs=86.4

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH--HHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEI   93 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~   93 (230)
                      ...-++|+|+|++|||||||+|+|+|...........+.|.......    ....+.++|+||..........  ....+
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc----ccccceEEEEEeeccccccccccchhhhH
Confidence            34446899999999999999999998753222222233333332222    2345678999887654443332  22333


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHh
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  161 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l  161 (230)
                      ..........++++++|+|+..+++..+..+++.+... +    .|+++|+||+|+..  ....++++
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-~----~piivv~NK~D~~~--~~~~~~~~  156 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-G----IPVIVIATKADKIP--KGKWDKHA  156 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSC--GGGHHHHH
T ss_pred             Hhhhhccccchhhhhhhhhccccccccccccccccccc-c----CcceechhhccccC--HHHHHHHH
Confidence            34444556678999999999888998888888887764 2    47999999999986  44444443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.3e-17  Score=124.05  Aligned_cols=118  Identities=15%  Similarity=0.200  Sum_probs=87.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccc-----------cc----CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFK-----------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~-----------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      +..+|+++|+.++|||||+++|++.....           ..    ....++|.......+.+ ++..+.|+||||+.++
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence            34799999999999999999997431100           00    01126777777776765 7889999999998764


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .           ..+......+|++++|+|+.+.+...+...+..+... |-   +++++++||+|+.+
T Consensus        81 ~-----------~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~~  134 (204)
T d2c78a3          81 I-----------KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFMNKVDMVD  134 (204)
T ss_dssp             H-----------HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCC
T ss_pred             H-----------HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEEecccCC
Confidence            3           2223445677999999999889999888888877774 42   35788899999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.8e-17  Score=118.74  Aligned_cols=125  Identities=22%  Similarity=0.182  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|++|||||||+|+|+|....... ..++.+......... ..+..+.++||||+.+......   .........
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~~   76 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIH-IDGMPLHIIDTAGLREASDEVE---RIGIERAWQ   76 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEE-ETTEEEEEEECCCCSCCSSHHH---HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEee-cccccccceEeeeee-ccCceeeeccccccccccccch---hHHHHHHHH
Confidence            68999999999999999999998753332 223344443333343 3778999999999987542222   222222334


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++..+|++++++|..+.........+..+.+....  ..|+++|+||+|+..
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~iilv~NK~Dl~~  126 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITG  126 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHC
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhccc--ccceeeccchhhhhh
Confidence            45678999999999866655555544444443332  358999999999765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=1.2e-17  Score=126.47  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEE-----------------eeCCeEEEEEeCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV-----------------LKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------------~~~~~~~~liDtPG~~~~   82 (230)
                      +.|+++|++++|||||+|+|++.....  ....+++.........                 ...+..+.++||||+.++
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchh--eecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            569999999999999999998764311  1111222211111110                 124568999999998776


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .....           .....+|++++|+|+.+.++..+...+..+... +    .|+++|+||+|+...
T Consensus        84 ~~~~~-----------~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~iivlNK~D~~~~  137 (227)
T d1g7sa4          84 TTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-R----TPFVVAANKIDRIHG  137 (227)
T ss_dssp             TTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSTT
T ss_pred             cccch-----------hcccccceEEEEEecccCcccchhHHHHHhhcC-C----CeEEEEEECccCCCc
Confidence            53332           345678999999999889999998888887764 2    489999999998853

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.8e-17  Score=121.57  Aligned_cols=128  Identities=21%  Similarity=0.175  Sum_probs=80.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVKC   96 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~~   96 (230)
                      +.++|+++|++|||||||+|+|++........ ..+++.......+. .++..+.++||||+......... ........
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVF-IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEE-ETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeec-cCCceeeeeccCCccccccccccccccchhHH
Confidence            34899999999999999999999987533322 23344444444444 37889999999998642211100 00000111


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      +......+|++++|+|+..........++..+...     ..|+++|+||+|+...
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-----~~~~i~v~nK~D~~~~  135 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVH  135 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTT
T ss_pred             HHHHHhcCCEEEEeecccccchhhHHHHHHHHHHc-----CCceeeeccchhhhcc
Confidence            12223456899999999878888777777776653     2489999999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=1.6e-16  Score=114.86  Aligned_cols=122  Identities=22%  Similarity=0.250  Sum_probs=79.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|++|||||||+|+|+|....... ...+.|.......+. .....+.++||||+........  ...........
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~--~~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVE-WYGKTFKLVDTCGVFDNPQDII--SQKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEE-ETTEEEEEEECTTTTSSGGGCC--CHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeecccccccc-ccccccccccccceeeeecccc--ccccccccccc
Confidence            6899999999999999999997653222 233444444444343 3677899999999876442221  11122222334


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+|+++++++.+......+..++..+... +    .|+++|+||+|+..
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~----~pviiv~NK~Dl~~  123 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLR  123 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHH
T ss_pred             cccCcEEEEeecccccccccccccccccccc-c----ccccccchhhhhhh
Confidence            4677999999999878888888777777654 3    37999999999864

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.68  E-value=2.6e-16  Score=115.97  Aligned_cols=117  Identities=16%  Similarity=0.198  Sum_probs=87.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc--------------ccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA--------------FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      ..+|+++|+.++|||||+++|++...              ........++|.......+.+ .++.+.++||||+.+   
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~---   78 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD---   78 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH---
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHH---
Confidence            47899999999999999999975211              001112346677766666664 778999999999643   


Q ss_pred             CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                              +...+......+|++++|+|+.+.+...+.+.+..+... +.   +++++++||+|...
T Consensus        79 --------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~~---~~iIv~iNK~D~~~  133 (196)
T d1d2ea3          79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV---EHVVVYVNKADAVQ  133 (196)
T ss_dssp             --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCS
T ss_pred             --------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-cC---CcEEEEEecccccc
Confidence                    334445566788999999999989998888777777664 32   37999999999875

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.3e-16  Score=129.97  Aligned_cols=118  Identities=19%  Similarity=0.140  Sum_probs=79.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC---CccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      .+++|+++|.+|||||||+|+|+|..........   .++|.....+  ...+...+.+|||||+.......+....+  
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~--~~~~~~~~~l~DtPG~~~~~~~~~~~~~~--  130 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY--KHPNIPNVVFWDLPGIGSTNFPPDTYLEK--  130 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE--ECSSCTTEEEEECCCGGGSSCCHHHHHHH--
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee--eccCCCeEEEEeCCCcccccccHHHHHHH--
Confidence            4589999999999999999999996543322211   2234443333  33356679999999998765444322211  


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                          .....+|.+|++.+  .+++..+..+++.+.+. +    .|+++|+||+|..
T Consensus       131 ----~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-~----k~~~~V~nK~D~~  175 (400)
T d1tq4a_         131 ----MKFYEYDFFIIISA--TRFKKNDIDIAKAISMM-K----KEFYFVRTKVDSD  175 (400)
T ss_dssp             ----TTGGGCSEEEEEES--SCCCHHHHHHHHHHHHT-T----CEEEEEECCHHHH
T ss_pred             ----hhhhcceEEEEecC--CCCCHHHHHHHHHHHHc-C----CCEEEEEeCcccc
Confidence                22345677777765  37888898888888774 3    4899999999964

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=7.5e-17  Score=118.09  Aligned_cols=125  Identities=18%  Similarity=0.155  Sum_probs=77.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      .|+|+|++|||||||+|+|+|.....  ....+.|...........++..+.++||||+.............+...+.  
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~--~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~--   78 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--   78 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCce--ecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH--
Confidence            68999999999999999999887532  23445566655555555567789999999985433322323333333333  


Q ss_pred             cCCccEEEEEEeCC--CCCCHHHH-HHHHHHHHHhccc-ccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVR--SRFSQEEE-AALHSLQTLFGKK-IFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~--~~~~~~~~-~~l~~l~~~~~~~-~~~~~ivv~tk~D~~~  151 (230)
                        .++.++++++..  +....... ............. ...|+++|+||+|+..
T Consensus        79 --~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~  131 (185)
T d1lnza2          79 --RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE  131 (185)
T ss_dssp             --HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred             --HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh
Confidence              346777777654  22332222 2222222322222 3458999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.67  E-value=1.3e-15  Score=109.29  Aligned_cols=114  Identities=14%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|||||||+++|.+....     ...+|.......+.. ++..+.++||||..           .+.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~-----------~~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-----SCCCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-----cccceEeeeeeeccc-cccceeeeecCcch-----------hhhhHHH
Confidence            479999999999999999999987541     223344444444543 77899999999953           2333445


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..++++++|+|..+..+...  ....+.+...  .....|+++|+||+|+..
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  117 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPG  117 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             hhhhhhhcceeeeecccchhHHH--HHHhhhhhhhhcccCCCceEEEEecccccc
Confidence            67788999999999975544333  2222222222  123358999999999864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.1e-16  Score=114.04  Aligned_cols=117  Identities=11%  Similarity=0.059  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|||||||++++++.......  .+..+.......+... ....+.+|||||....           .....
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~-----------~~~~~   72 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY-----------RTITT   72 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCccc--ccccccceeeEEEEeecceEEEEEEECCCchhh-----------HHHHH
Confidence            78999999999999999999876542221  2222222222222221 2247889999995431           23344


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+++.+|++|+|+|.++.-+... ..++..+.....  ...++++|+||+|...
T Consensus        73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~  124 (169)
T d3raba_          73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMED  124 (169)
T ss_dssp             TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC--SCCEEEEEEECTTCGG
T ss_pred             HHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccC--CcceEEEEEeeccccc
Confidence            57789999999999974322222 333344433322  2358899999999764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.66  E-value=9.2e-16  Score=111.22  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=79.1

Q ss_pred             CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        13 ~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      ..++....+|+++|.+|||||||+|+|.+........     +.......+.. .+..+.++|+||....          
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-----~~~~~~~~i~~-~~~~~~i~d~~g~~~~----------   73 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-----TQGFNIKSVQS-QGFKLNVWDIGGQRKI----------   73 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECSSCGGG----------
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCccee-----eeeeeEEEecc-CCeeEeEeeccccccc----------
Confidence            3455667999999999999999999998876522211     11122233333 5778999999996532          


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~~  152 (230)
                       .......+..+|++++|+|+++..+...  ....+.....  .....|+++|+||+|+...
T Consensus        74 -~~~~~~~~~~~~~ii~v~d~~d~~s~~~--~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~  132 (176)
T d1fzqa_          74 -RPYWRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA  132 (176)
T ss_dssp             -HHHHHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred             -hhHHHHHhhccceeEEeeccccccchhh--hhhhhhhhhhhhccCCCeEEEEEEecccccc
Confidence             1334456678899999999985544333  2222222222  1224589999999999763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.9e-16  Score=111.98  Aligned_cols=114  Identities=22%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|||||||++.+.+......     ..+....+ ..+.. ++  ..+.+|||||...+.           ..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-----~~~~~~~~~~~i~~-~~~~~~l~i~D~~g~e~~~-----------~~   64 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-----AEAAGHTYDRSIVV-DGEEASLMVYDIWEQDGGR-----------WL   64 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC--------------CEEEEEEEEE-TTEEEEEEEEECC------------------C
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-----CCeeeeeecceeec-cccccceeeeecccccccc-----------ee
Confidence            5899999999999999999998753111     11111111 12222 33  478899999965432           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++.++|++++|+|++++-+... ..++..+....+ ....|+++|+||+|+..
T Consensus        65 ~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~  119 (168)
T d2gjsa1          65 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVR  119 (168)
T ss_dssp             HHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGG
T ss_pred             cccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhh
Confidence            3356678899999999985544333 344444544432 23458999999999865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-15  Score=109.18  Aligned_cols=118  Identities=20%  Similarity=0.206  Sum_probs=77.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      +..+|+++|.+|||||||++++++......    ...|....+......++  ..+.++||||...+.....        
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~--------   70 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS----YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ--------   70 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSC----CCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcc----cCcceecccceEEecCcEEEEeeecccccccccccccc--------
Confidence            347999999999999999999986553211    11232222221111244  3677899999876543322        


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                         ..+..+|++++|+|++++-+... ..++..+.+..+. ...|+++|+||+|+..
T Consensus        71 ---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~  123 (167)
T d1xtqa1          71 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHM  123 (167)
T ss_dssp             ---GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCS-SCCCEEEEEECTTCGG
T ss_pred             ---hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccc-cccceeeecccccccc
Confidence               45678999999999985533333 3455555555443 2358999999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.65  E-value=1.8e-15  Score=110.14  Aligned_cols=116  Identities=17%  Similarity=0.273  Sum_probs=77.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccC-----CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   93 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (230)
                      ..+|+++|++++|||||+|+|++........     ...+.+.......... .+..+.++|+||..           .+
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~-----------~~   72 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------DL   72 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------HH
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCcccccccccccc-----------cc
Confidence            3689999999999999999999764321111     1122333333333333 67889999999953           23


Q ss_pred             HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..........+|++++|+|+.+.....+...+..+... +    .|+++|+||+|+..
T Consensus        73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-~----~p~iiv~NKiD~~~  125 (179)
T d1wb1a4          73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-N----IPIIVVITKSDNAG  125 (179)
T ss_dssp             HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCBCEEEECTTSSC
T ss_pred             ccchhhhhhhccccccccccccccchhhhhhhhhhhhc-C----CcceeccccccccC
Confidence            34444556778999999999888887777766665553 3    47999999999986

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=1.6e-16  Score=113.52  Aligned_cols=120  Identities=21%  Similarity=0.276  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~   97 (230)
                      .+|+|+|.+|||||||+|+|+|....... ...+.|.......... .+..+.++||||+.......  .......... 
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~-   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE-   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeee-ccccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH-
Confidence            47999999999999999999987643222 2233444443443443 67889999999986533211  1111222222 


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                         +..+|++++|+|+++.....+......+.       ..++++++||.|....
T Consensus        78 ---~~~ad~ii~v~d~~~~~~~~~~~~~~~~~-------~~~~i~~~~k~d~~~~  122 (160)
T d1xzpa2          78 ---IEKADIVLFVLDASSPLDEEDRKILERIK-------NKRYLVVINKVDVVEK  122 (160)
T ss_dssp             ---HHHCSEEEEEEETTSCCCHHHHHHHHHHT-------TSSEEEEEEECSSCCC
T ss_pred             ---HHhCCEEEEEEeCCCCcchhhhhhhhhcc-------cccceeeeeeccccch
Confidence               34568999999998777766554443322       2379999999999863

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.6e-16  Score=112.96  Aligned_cols=118  Identities=22%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|||||||++++++......    ...|....+......++.  .+.++||+|...+.           ..
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~----~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-----------~~   66 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-----------AM   66 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSS----CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-----------HH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCc----cCcceeeccccceeeccccceecccccccccccc-----------cc
Confidence            46899999999999999999998654211    112332222222222443  56789999976532           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++-+... ..++..+.+..+.....|+++|+||+|+..
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  122 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  122 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc
Confidence            2234456799999999985433332 455555555444444568999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.1e-16  Score=112.18  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+|+|.+|||||||++++++.......  .+..+.......... ++  ..+.++||||...+.           ...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~~   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-----------AVT   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSC--TTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-----------HHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccccceeEEEEE-CCEEEEEEEeccCCchhHH-----------HHH
Confidence            68999999999999999999876542222  222232222222332 33  378899999965432           222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++-+... ..++..+.+...  ...|+++++||+|+..
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~  123 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA  123 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcc--ccceEEEEcccccchh
Confidence            344557899999999985433222 344555555433  2458999999999754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.7e-16  Score=111.82  Aligned_cols=119  Identities=22%  Similarity=0.218  Sum_probs=74.4

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   94 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (230)
                      ....+|+++|.+|||||||++++++.... ...  .++........+.. ++  ..+.+|||+|...+.....       
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~-~~~--~~t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~-------   72 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDY--DPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE-------   72 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSC--CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH-------
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCC-ccc--ccccccceeeEecc-CCeeeeeeccccccccccccccc-------
Confidence            44579999999999999999999876542 111  11112221222222 44  3677899999876543322       


Q ss_pred             HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          ..+..+|++++|+|.++..+... ..++..+.+..+. ...|+++|+||+|+..
T Consensus        73 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~  125 (173)
T d2fn4a1          73 ----QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLES  125 (173)
T ss_dssp             ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGG
T ss_pred             ----hhhccceeeeeecccccccccchhhhhhHHHHHHhcc-CCCceEEEEEeechhh
Confidence                23345689999999985433332 3444444443322 2348999999999764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.4e-15  Score=112.18  Aligned_cols=119  Identities=18%  Similarity=0.191  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ++|+|+|.+|||||||++.+++...........+.+..  ...+... ....+.+|||||...+....           .
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~l~i~Dt~G~e~~~~~~-----------~   73 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK--IKTVELDGKTVKLQIWDTAGQERFRTIT-----------S   73 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE--EEEEEETTEEEEEEEECCTTTTTTTCCC-----------G
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEE--EEEEEEeeEEEEEEEEECCCchhhHHHH-----------H
Confidence            78999999999999999999866532221112222222  2222221 23478889999977654322           2


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  153 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (230)
                      ..+..+|++++|+|++++.+... ..+...+.+...  ...|+++|.||+|.....
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~  127 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKR  127 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTC
T ss_pred             HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhccc--CCceEEEEEecccccccc
Confidence            46678999999999985433333 233333443322  335899999999987643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.3e-16  Score=111.35  Aligned_cols=115  Identities=21%  Similarity=0.132  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||+|++++.......  .+............. .+  ..+.++||||.........          
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~--~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~----------   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITK----------   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCS--SCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccc--ccccccccceeeeee-cCceeeeeeeccCCccchhhhhh----------
Confidence            68999999999999999999865432111  111111111122221 33  4778999999776543332          


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ..+..+|++++|+|++++-+... ..+++.+.+..+   ..|+++|+||+|+..
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~iilVgnK~Dl~~  120 (164)
T d1z2aa1          70 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLD  120 (164)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGG
T ss_pred             -hhhccCceEEEEEeccchhhhhhcccccccccccCC---CceEEEeeccCCccc
Confidence             34567899999999985443332 345555555443   348999999999865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.3e-16  Score=112.55  Aligned_cols=116  Identities=20%  Similarity=0.200  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||++++++.......  ..+.+.......+.. ++  ..+.++||||..++.....          
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~----------   71 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITS----------   71 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHHH----------
Confidence            68999999999999999999876542221  222222222232332 33  3788999999765443322          


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                       ..+..+|++++|+|.+++-+... ..++..+.+....  ..|+++|+||+|+.+
T Consensus        72 -~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~--~~piilvgnK~Dl~~  123 (175)
T d2f9la1          72 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRH  123 (175)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred             -HHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCC--CCcEEEEEeeecccc
Confidence             34567899999999984432222 4455556555443  248999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.5e-16  Score=112.46  Aligned_cols=116  Identities=14%  Similarity=0.110  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||++++++......  .....+.......+.. .+  ..+.+|||||...           +....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence            7899999999999999999997654222  2222233333333332 33  3578899999532           22444


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++.+++++++|+|.+++.+... ..++..+.+...  ...|+++|+||+|...
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ilvgnK~D~~~  124 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE  124 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhccccc--ccccEEEEEeeccccc
Confidence            567789999999999875433222 344444444322  2358999999999764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1e-15  Score=117.79  Aligned_cols=121  Identities=19%  Similarity=0.252  Sum_probs=89.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc----------------cccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF----------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   82 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (230)
                      -++|+++|+.|+|||||+.+|+-....                .......++|.......+.+ ++..++|+||||+.++
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhh
Confidence            368999999999999999999632110                00112335666666676776 8899999999999998


Q ss_pred             CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhh
Q 026970           83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET  156 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~  156 (230)
                      .....       ..+    ..+|+.++|+|+.+.........++...+. +    .|.++++||+|....+-..
T Consensus        85 ~~e~~-------~~l----~~~D~avlVvda~~Gv~~~T~~~w~~a~~~-~----lP~i~fINKmDr~~ad~~~  142 (276)
T d2bv3a2          85 TIEVE-------RSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-K----VPRIAFANKMDKTGADLWL  142 (276)
T ss_dssp             STTHH-------HHH----HHCCEEEEEEETTTSSCHHHHHHHHHHHTT-T----CCEEEEEECTTSTTCCHHH
T ss_pred             HHHHH-------HHH----HhhhheEEeccccCCcchhHHHHHHHHHHc-C----CCEEEEEecccccccccch
Confidence            75433       333    345899999999989999998888877764 2    4899999999998655333

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.2e-16  Score=111.38  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|||||||++++++...........  ........+.. .....+.+|||||...           +.....
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~   72 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI--GVEFGSKIINVGGKYVKLQIWDTAGQER-----------FRSVTR   72 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS--EEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccc--ccceeeEEEEecCcceeEEEEECCCchh-----------hhhhHH
Confidence            689999999999999999998765422211111  11111111211 1224688999999643           223445


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..++++++|+|.+++-+... ..++..+.+....  ..|+++|+||+|+..
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~  124 (174)
T d2bmea1          73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDA  124 (174)
T ss_dssp             TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             HHhhhCCEEEEEEecccchhHHHHhhhhcccccccCC--ceEEEEEEecccccc
Confidence            67788999999999984322221 3344444443332  458999999999754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-15  Score=110.67  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|||||||++++++........  ...+........... ....+.++|++|.........           
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-----------   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR-----------   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcc--cceeeccceeeeeeeeeEEEEEeecccCccchhhHHH-----------
Confidence            689999999999999999998775432221  122222222222221 234788999999876543322           


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|++++.+... ..++..+.+..+.  ..|+++|.||+|...
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~--~~piilv~nK~D~~~  122 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLES  122 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCC--CCeEEEEecCCchhh
Confidence            34567899999999985543332 4555556555433  348999999999754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.63  E-value=5.3e-15  Score=107.77  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=76.3

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      .....+|+++|.+|||||||++.|.+.......     .|.......... .+..+.++||||.......          
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~----------   77 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVETLSY-KNLKLNVWDLGGQTSIRPY----------   77 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEEEEE-TTEEEEEEEEC----CCTT----------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-----cccceEEEEEee-CCEEEEEEecccccccchh----------
Confidence            445689999999999999999999877653221     122233333333 6788999999998654322          


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                       ...++..+|++++|+|.+++.+...  ...++.....  .....|+++|+||+|+..
T Consensus        78 -~~~~~~~~~~ii~v~d~~d~~s~~~--~~~~l~~~~~~~~~~~~piliv~NK~Dl~~  132 (182)
T d1moza_          78 -WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPG  132 (182)
T ss_dssp             -GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred             -HHhhhccceeEEEEeeecccccchh--HHHHHHHHHHhhccCCcceEEEEEeecccc
Confidence             2356678899999999986655443  2233333322  122458999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.63  E-value=3.1e-15  Score=107.22  Aligned_cols=116  Identities=17%  Similarity=0.082  Sum_probs=75.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|++|+|||||+++|.+.....    ....|....+..+.. ++..+.+||+||...           +.....
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~----~~~~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNE----DMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCC----SCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCC----cccccceeeeeeeee-eeEEEEEeecccccc-----------cccccc
Confidence            4799999999999999999998765421    122355445554543 678999999999532           122233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|++++.+... ..++..+.+.. .....|+++|+||.|+..
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pi~lv~nK~Dl~~  118 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPG  118 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhhh-cccCCcEEEEEeccccch
Confidence            45678899999999975433222 22222222211 123458999999999865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=109.49  Aligned_cols=117  Identities=15%  Similarity=0.113  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|||||||++++++......  ..++.+........... ....+.+|||||.....           ....
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-----------~~~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFR-----------SLIP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGG-----------GGHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCc--cccceeeeccceeeccCCCceeeeecccCCcchhc-----------cchH
Confidence            3799999999999999999997664222  22222222222222221 22477899999976432           2233


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+..+|++++|+|.+++.+... ..++..+......  ..|+++|+||+|+.+
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~--~~~iilvgnK~Dl~~  119 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLAD  119 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGG
T ss_pred             HHhhccceEEEeeccccccchhhhHhhHHHHHHhcCC--CceEEEEecccchhh
Confidence            45678899999999985543333 4555555554433  358999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.5e-15  Score=109.27  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+|+|.+|||||||++++++.......  .+.............. ....+.++||+|.....           ....
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~   70 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-----------ALGP   70 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSC--CCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccc--ccccccchheeeeccCCccceeeeeccCCcceec-----------ccch
Confidence            68999999999999999999876542211  1111212222222221 13578899999976432           3334


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..+.++|++++|+|++++-+... ..+++.+.....  ...++++|+||+|+..
T Consensus        71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~~  122 (167)
T d1z08a1          71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEK  122 (167)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGG
T ss_pred             hhccCCceeEEEEeCCchhHHHhhhhhhhhcccccc--cccceeeecccccccc
Confidence            56788999999999985433333 344444444322  2347889999999865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.2e-15  Score=110.51  Aligned_cols=121  Identities=15%  Similarity=0.093  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+++|.+|||||||++++++...........+.+...............+.++||||.....           .....
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~~   71 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-----------SLGVA   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhh-----------hHHHH
Confidence            7899999999999999999987654222111111121111111111122467899999964322           23335


Q ss_pred             hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      ....++++++|+|++++.+... ..++..+.+.....  ...|+++|+||+|+..
T Consensus        72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~  126 (175)
T d1ky3a_          72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  126 (175)
T ss_dssp             CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhh
Confidence            6778899999999985544332 45555565554322  2458999999999764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-15  Score=108.63  Aligned_cols=119  Identities=19%  Similarity=0.104  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   92 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (230)
                      |.....+|+++|.+|||||||+++++..... ... . + |............+  ..+.+|||||...+...       
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~-~-~-Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~-------   73 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFP-EEY-V-P-TVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-------   73 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCC-CSC-C-C-SSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-------
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCC-CcC-C-C-ceeeeeeEEEeeCCceEEeecccccccchhhhh-------
Confidence            3445589999999999999999999876532 211 1 1 22111111111122  46789999998764422       


Q ss_pred             HHHHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                          ....+.++|++++|+|++++-+...  ..+...+... ..  ..|+++|+||+|+..
T Consensus        74 ----~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~--~~~~ilvgnK~Dl~~  127 (185)
T d2atxa1          74 ----RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPFLLIGTQIDLRD  127 (185)
T ss_dssp             ----GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TCCEEEEEECTTSTT
T ss_pred             ----hhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CC--CCCeeEeeecccccc
Confidence                2256788999999999985543332  3344444443 32  348999999999876

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.2e-15  Score=109.06  Aligned_cols=117  Identities=15%  Similarity=0.161  Sum_probs=56.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||+++|++......  ..+..+.......+.. ++  ..+.+|||||...+.           ...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~-----------~~~   72 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR-----------TIT   72 (173)
T ss_dssp             EEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--cCccccceEEEEEEEE-CCEEEEEEEEECCCchhhH-----------HHH
Confidence            6899999999999999999997653211  1122223333333333 33  467789999965432           223


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ..++.++|++++|+|++++.+... ..+...+.....  ...|+++|.||.|....
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~D~~~~  126 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDK  126 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSC
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhcc--CCceEEEEEecccchhh
Confidence            356788999999999985543333 333444444322  23589999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9e-15  Score=105.48  Aligned_cols=119  Identities=22%  Similarity=0.174  Sum_probs=70.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ...+|+|+|.+|||||||++++++...... .  .++........+.. ++  ..+.++||||..+..           .
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~-~--~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~-----------~   68 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTD-Y--DPTIEDSYTKQCVI-DDRAARLDILDTAGQEEFG-----------A   68 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSS-C--CTTCCEEEEEEEEE-TTEEEEEEEEECC----CC-----------H
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcc-c--Ccccccceeeeeee-ccccccccccccccccccc-----------c
Confidence            347999999999999999999987653211 1  11111222222222 33  368899999987543           1


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .....+..+|++++|+|.+++-+... ..++..+.+.... ...|+++|+||+|+...
T Consensus        69 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~  125 (171)
T d2erya1          69 MREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQ  125 (171)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTS
T ss_pred             cccccccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhh
Confidence            22233445699999999985433222 3344444443332 24579999999998643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.3e-15  Score=108.28  Aligned_cols=117  Identities=19%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|||||||++++++........    .|...........++  ..+.+||++|.....           ..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-----------~~   67 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-----------SM   67 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-----------HH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccC----CceeeeeeeeeecCcceEeeccccCCCccccc-----------cc
Confidence            4799999999999999999999765422211    122111111111133  467889999965421           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+.++|++++|+|++++-+... ..+...+..... ....|+++|+||+|+..
T Consensus        68 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~  122 (167)
T d1kaoa_          68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES  122 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred             hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhh
Confidence            2234456799999999985544333 334344443322 23458999999999764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.61  E-value=7.3e-15  Score=110.08  Aligned_cols=121  Identities=13%  Similarity=0.150  Sum_probs=83.2

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-------------------------------cCCCCccceeeeeEEEE
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-------------------------------RASSSGVTSTCEMQRTV   64 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~   64 (230)
                      ..+.++|+++|+.++|||||+++|+.......                               .....+.|.......+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            34568999999999999999999963221000                               01112344444444444


Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970           65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  144 (230)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~  144 (230)
                      . .++.+.++||||+.++.           ..+......+|++++|+|+.+.+...+...+..+... |   .+++++++
T Consensus        86 ~-~~~~~~iiD~PGH~dfv-----------~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-g---v~~iiv~v  149 (222)
T d1zunb3          86 T-AKRKFIIADTPGHEQYT-----------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-G---IKHIVVAI  149 (222)
T ss_dssp             C-SSEEEEEEECCCSGGGH-----------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCEEEEEE
T ss_pred             c-cceEEEEEeccchhhhh-----------hhhccccccCceEEEEeccccCcccchHHHHHHHHHc-C---CCEEEEEE
Confidence            3 67899999999987642           3333445677999999999989998888777766553 5   23699999


Q ss_pred             eCCCCCCC
Q 026970          145 TGGDELED  152 (230)
Q Consensus       145 tk~D~~~~  152 (230)
                      ||+|+...
T Consensus       150 NK~D~~~~  157 (222)
T d1zunb3         150 NKMDLNGF  157 (222)
T ss_dssp             ECTTTTTS
T ss_pred             Eccccccc
Confidence            99998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.3e-15  Score=108.39  Aligned_cols=116  Identities=22%  Similarity=0.157  Sum_probs=72.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|||||||++++++.....    ....|....+......++  ..+.+|||||...+.            .
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~----~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------------~   65 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIW----EYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI------------Q   65 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCS----CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH------------H
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC----ccCCceeccccccccccccceEEEEeecccccccc------------c
Confidence            3789999999999999999999765321    112233333322222244  468899999975421            1


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+.++|++++|+|++++.+.... .+...+... ......|+++|+||+|+..
T Consensus        66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilvgnK~Dl~~  120 (168)
T d2atva1          66 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI-KKPKNVTLILVGNKADLDH  120 (168)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HTTSCCCEEEEEECGGGGG
T ss_pred             chhhhcccccceeecccCCccchhhhhhhccccccc-ccccCcceeeeccchhhhh
Confidence            11234467999999999865443332 223333332 2223458999999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.3e-15  Score=107.81  Aligned_cols=114  Identities=18%  Similarity=0.095  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++++++......    ...|...... .... .....+.+|||||......           ..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-----------~~   67 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEV----YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----------LR   67 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-----------TG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCC----cCCceeeeccccccccccceeeeccccCccchhcc-----------cc
Confidence            6899999999999999999987654211    1112222211 1221 1223688999999765432           23


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++.++|++++|+|++++-+...  ..+...+... ..  ..|+++|+||+|+..
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~--~~piilvgnK~Dl~~  120 (177)
T d1kmqa_          68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CP--NVPIILVGNKKDLRN  120 (177)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TSCEEEEEECGGGTT
T ss_pred             hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CC--CCceEEeeecccccc
Confidence            356788999999999985433322  2334444443 32  358999999999876

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.60  E-value=3.5e-15  Score=114.47  Aligned_cols=115  Identities=30%  Similarity=0.369  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (230)
                      ++|+++|+.|+|||||+.+|+........                ....+.|.......+.+ ++..+.++||||+.++.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGGH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhhh
Confidence            68999999999999999999532211000                01234566666666766 88999999999998753


Q ss_pred             CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                             .+....+    .-+|++++|+|+.+.........++.+.+. +    .|.++++||+|...
T Consensus        82 -------~e~~~al----~~~D~avlvvda~~Gv~~~t~~~~~~~~~~-~----~p~~i~iNk~D~~~  133 (267)
T d2dy1a2          82 -------GEIRGAL----EAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKGG  133 (267)
T ss_dssp             -------HHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGCC
T ss_pred             -------hhhhhhh----cccCceEEEeeccCCccchhHHHHHhhhhc-c----cccccccccccccc
Confidence                   3333333    345899999999989999999888887775 3    37899999999853

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.60  E-value=7.6e-15  Score=106.08  Aligned_cols=116  Identities=15%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ....+|+++|.+|||||||++++++......     ..|......... .....+.++|+||....           ...
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~D~~g~~~~-----------~~~   72 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVT-YKNVKFNVWDVGGQDKI-----------RPL   72 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-----EEETTEEEEEEE-ETTEEEEEEEESCCGGG-----------HHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-----cceeeeeEEEee-ccceeeEEecCCCcchh-----------hhH
Confidence            3458999999999999999999987654221     123333333333 36678999999997642           144


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..++++++|+|+++.-+...  ...++.....  .....|+++|+||+|+..
T Consensus        73 ~~~~~~~~~~ii~v~D~s~~~~~~~--~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~  127 (173)
T d1e0sa_          73 WRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPD  127 (173)
T ss_dssp             HGGGTTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred             HHhhhcccceEEEEEecccchhHHH--HHHHHHHHhhhcccccceeeeeeecccccc
Confidence            5567889999999999984333222  2223333222  123458999999999865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=4.5e-15  Score=106.97  Aligned_cols=118  Identities=23%  Similarity=0.191  Sum_probs=75.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|+|||||++++++...... . .+  |....+......++  ..+.+||++|........          
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~-~-~~--t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~----------   69 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPD-Y-DP--TIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR----------   69 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTT-C-CT--TCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH----------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcc-c-Cc--ceeeccccccccccccccccccccccccccccch----------
Confidence            48999999999999999999987653211 1 11  22111111111133  467899999987644322          


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                       ...++++|++++|+|++++-+... ..++..+.+.... ...|+++|+||+|+...
T Consensus        70 -~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~  124 (169)
T d1x1ra1          70 -EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHL  124 (169)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTT
T ss_pred             -hhhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhh
Confidence             134456799999999986544333 4556666655432 24589999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.2e-15  Score=108.55  Aligned_cols=119  Identities=16%  Similarity=0.151  Sum_probs=73.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..+|+++|.+|||||||+++|++......  .....+.......+... ....+.+|||||.......           .
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~   73 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPE--LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-----------T   73 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------H
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCc--cccceeecceeEEEEEeccccEEEEEECCCchhhHHH-----------H
Confidence            37899999999999999999987654222  12222333222223321 2346889999997654322           1


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+.++|++++|+|++++.+... ..++..+.+. ......+++++.||.|...
T Consensus        74 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~  127 (177)
T d1x3sa1          74 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKEN  127 (177)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSS
T ss_pred             HHHHhcCCEEEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeecccccc
Confidence            234568899999999874322221 2333333221 2334568899999999765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-15  Score=108.49  Aligned_cols=116  Identities=20%  Similarity=0.185  Sum_probs=73.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||+|++++.......    ..|....+.......  ...+.++|+||.....           ...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----------~~~   68 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-----------AMR   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH-----------HHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCcc----CCccceeeccceeeeceeeeeeeeeccCccccc-----------cch
Confidence            68999999999999999999976542211    112222211111113  3467889999976421           222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..++++++|+|.+++.+.+. ..++..+.+..+. ...|+++|+||+|+..
T Consensus        69 ~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  122 (166)
T d1ctqa_          69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKCDLAA  122 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-SSCCEEEEEECTTCSC
T ss_pred             hhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC-CCCeEEEEeccccccc
Confidence            233456689999999985544333 4555666665432 2358999999999764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.9e-15  Score=108.90  Aligned_cols=117  Identities=14%  Similarity=0.060  Sum_probs=70.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-----------CCeEEEEEeCCCCCCCCCCcHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF   88 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtPG~~~~~~~~~~   88 (230)
                      .+|+++|.+|||||||++++++.......  ....+.......+...           ....+.++||||.         
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~---------   74 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKF--ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ---------   74 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEE--EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH---------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCcc--CCcccceeeEEEEEEecccccccccccceEEeccccCCcc---------
Confidence            78999999999999999999976542211  1111111111111110           1236889999994         


Q ss_pred             HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970           89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                        +.+.......+.++|++++|+|++++.+.  .....++.....  .....|+++|+||+|+..
T Consensus        75 --e~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~  135 (186)
T d2f7sa1          75 --ERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPD  135 (186)
T ss_dssp             --HHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             --hhhHHHHHHHHhcCCEEEEEEeccccccc--eeeeeccchhhhhccCCCceEEEEeeeccchh
Confidence              23334444567789999999999743221  222233333221  123357899999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=109.52  Aligned_cols=114  Identities=21%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+|+++|.+|||||||++++++......    ...|....+..... .+  ...+.+|||||.....           ..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~----~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~   68 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG-----------GL   68 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CC----EEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHS-----------SC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc----cccceeccccccccccccccccccccccccccccc-----------ee
Confidence            6899999999999999999987654211    11232222222111 12  3478999999954322           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+.++|++++|+|++++-+... ..++..+.+...   ..|+++|+||+|+..
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~  121 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD  121 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC---SCCEEEEEECCCCSC
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhccC---CCceeeecchhhhhh
Confidence            3356788999999999986544332 445555544432   358999999999865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.8e-15  Score=107.83  Aligned_cols=118  Identities=17%  Similarity=0.117  Sum_probs=72.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ..+|+++|.+|||||||++++..........  +............. .....+.++||+|.....           ...
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-----------~~~   70 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNIN--PTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-----------ALA   70 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGT
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccc--cccccccccccccccccccceeeeecCCchhhh-----------HHH
Confidence            4789999999999999999998765422211  11111111111111 112356799999976532           222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|++++-+... ..++..+.+...  ...|+++|+||+|+..
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~  123 (167)
T d1z0ja1          71 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTD  123 (167)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGG
T ss_pred             HHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccC--CcceEEEecccchhcc
Confidence            245678899999999974433222 333333444333  3458999999999864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=6.6e-15  Score=109.44  Aligned_cols=120  Identities=10%  Similarity=0.136  Sum_probs=73.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .++|+|+|++|||||||+|+|++....      +++|.......+. .++..+.++||||.....       ..+...+.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~-~~~~~~~l~D~~g~~~~~-------~~~~~~~~   68 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAAD-YDGSGVTLVDFPGHVKLR-------YKLSDYLK   68 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETT-GGGSSCEEEECCCCGGGT-------HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEE-eCCeEEEEEecccccchh-------hHHHHHHH
Confidence            479999999999999999999987531      2233333333333 366788999999976422       22223333


Q ss_pred             hhcCCccEEEEEEeCCCCC--CHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRF--SQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~--~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~~  152 (230)
                      ......+.+++++++....  -.....++..+...+.  .....|+++|+||+|+...
T Consensus        69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            4444557888888875221  1222333322221111  1234589999999998763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.4e-15  Score=107.07  Aligned_cols=117  Identities=18%  Similarity=0.152  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      .+|+++|.+|||||||++++++........  +.............. ....+.++||||.....           ....
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~   73 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQE--STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-----------SLAP   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccc--cccccccccceeeccceEEEEEeccCCCchhhh-----------hhHH
Confidence            689999999999999999999765422212  111222222222221 12468899999975432           2223


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .++.+++++++|+|.+++.+... ..+...+.+....  ..|+++|+||+|+..
T Consensus        74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~  125 (170)
T d1r2qa_          74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLAN  125 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             HHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCC--CceEEeecccccccc
Confidence            45678899999999875433332 3444444444333  358999999999764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.58  E-value=4.8e-15  Score=106.71  Aligned_cols=117  Identities=20%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|||||||++++++...... .   ..|....+......++  ..+.++||||..+..           ..
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~-~---~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~-----------~~   68 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVED-Y---EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-----------AI   68 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSC-C---CTTCCEEEEEEEEETTEEEEEEEEECCC---CH-----------HH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcc-c---CCccccccccccccccccccccccccccccchh-----------hh
Confidence            37999999999999999999986653211 1   1122222221111233  467889999976421           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|.+++.+... ..+++.+.+... ....|+++|+||+|+..
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~  123 (168)
T d1u8za_          69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED  123 (168)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred             hhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEeccccccc
Confidence            2233446799999999985443333 345555555432 23458999999999754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.2e-14  Score=107.95  Aligned_cols=119  Identities=18%  Similarity=0.194  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ++|+++|++|||||||+|+|++......   .++.+.......+....+..+.++|+||...       ...   .....
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~---~~~~~   67 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRF---QLLDR   67 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHH---HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc---cCCeeEEEEEEEEeeeeeeeeeeeecccccc-------ccc---hhhhh
Confidence            4799999999999999999998764222   1222222222222223456899999999632       111   22334


Q ss_pred             hcCCccEEEEEEeCCCCCCH--HH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQ--EE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~--~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .+..++++++|+|+++....  .. ..+...+..........|+++|+||+|+..
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            55677899999998743221  11 222233333222223358999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6.9e-15  Score=105.42  Aligned_cols=120  Identities=16%  Similarity=0.101  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|.+|||||||++++++...........+........... .....+.++|++|.....          ......
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~   71 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-GERIKIQLWDTAGQERFR----------KSMVQH   71 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-TEEEEEEEEECCCSHHHH----------TTTHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeee-ccceEEEEEeccCchhhc----------ccccee
Confidence            689999999999999999998765432222222222222222111 133578899999854211          011224


Q ss_pred             hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++.++|++++|+|++++-+.+. ..++..+.+.... ...|+++|+||+|+..
T Consensus        72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~  123 (165)
T d1z06a1          72 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRS  123 (165)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGG
T ss_pred             eecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchh
Confidence            5678899999999985543333 3455555554332 2458999999999865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.8e-14  Score=103.36  Aligned_cols=116  Identities=14%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ++|+++|.+|||||||++++++.......  .+..+.......+.. .+  ..+.+|||||...+....           
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~~-----------   68 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTIT-----------   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcc--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHHH-----------
Confidence            68999999999999999999876542221  122222333333332 33  467789999975443222           


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++..++++++|+|.+++-+... ..+...+...  .....+++++.+|.|...
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~i~~~~k~d~~~  121 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH--ANDEAQLLLVGNKSDMET  121 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCTT
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcc--ccCcceeeeecchhhhhh
Confidence            245678899999999985433222 2222333332  223457889999999765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=9.8e-15  Score=106.54  Aligned_cols=119  Identities=13%  Similarity=0.127  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ++|+|+|.+|||||||++.+++.......  .+............. .....+.++||||........           .
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-----------~   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG-----------V   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-----------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCc--CCccceeeeeeeeeeCCceEEEEeeecCCcccccccc-----------c
Confidence            68999999999999999999976542211  111111111111221 123478899999976544322           2


Q ss_pred             hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      .....+|++++++|.++.-+... ..++..+.......  ...|+++|+||+|+..
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~  125 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  125 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc
Confidence            45678899999999974332222 44555555544321  2348999999999754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=104.07  Aligned_cols=118  Identities=19%  Similarity=0.180  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||++++++...... ..............+.. .+  ..+.+|||||.....           ...
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~-----------~~~   73 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR-----------SVT   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc-cccceeeeeeEEEEEEe-cCcEEEEEEEECCCchhhH-----------HHH
Confidence            6899999999999999999987653222 11121222222222322 34  367899999965422           333


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ...+..+|++++|+|.+++.+... ..+...+.+...  ...++++|.||+|....
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~d~~~~  127 (170)
T d2g6ba1          74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHE  127 (170)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSC
T ss_pred             HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccC--CCceEEEEEeeechhhc
Confidence            356678899999999974433222 233333333322  24589999999998764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-14  Score=106.36  Aligned_cols=115  Identities=22%  Similarity=0.127  Sum_probs=74.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|||||||++++++......  ..  .|............+  ..+.+|||||...+.           ..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~--~~--~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~   67 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE--YV--PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-----------RL   67 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSS--CC--CCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------TT
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCC--cC--CceeeecceeEeeCCceeeeeccccccchhhh-----------hh
Confidence            37899999999999999999987654211  11  122222221221233  478899999976543           22


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++-+....  .+...+... ..  ..|+++|.||+|+..
T Consensus        68 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~--~~~i~lvgnK~Dl~~  121 (191)
T d2ngra_          68 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CP--KTPFLLVGTQIDLRD  121 (191)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CT--TCCEEEEEECGGGGG
T ss_pred             hhhcccccceeecccccchHHHHHHHHHHHHHHHhhc-CC--CCceEEEeccccccc
Confidence            33567889999999999855433322  233333332 22  358999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=104.56  Aligned_cols=117  Identities=17%  Similarity=0.148  Sum_probs=74.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|||||||+++++........  .  .|....+. .+.. .....+.+||++|.......           
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~--~--~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------   67 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY--D--PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM-----------   67 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSC--C--CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH-----------
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCcc--C--CccccccceeEEeeeeEEEeccccccCccccccc-----------
Confidence            368999999999999999999876542211  1  12222222 1121 12346889999998764321           


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....+..+|++++|+|++++-+... ..++..+.+..+ ....|+++|+||+|+..
T Consensus        68 ~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~  122 (167)
T d1c1ya_          68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED  122 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred             ccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC-CCCCeEEEEEEecCccc
Confidence            1234456799999999985533332 445555544433 22458999999999865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=8.9e-15  Score=105.39  Aligned_cols=116  Identities=20%  Similarity=0.167  Sum_probs=73.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||++++++........  +..........+.. .+  ..+.+|||+|.....           ...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~--~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~-----------~~~   69 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SLA   69 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GGH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccc--ccccceeecccccc-ccccccccccccCCchhHH-----------HHH
Confidence            689999999999999999998776422211  11111112222222 33  478899999975422           122


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+..+|++++|+|.+++.+... ..+...+.....  ...++++|+||+|+..
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~v~nk~d~~~  122 (170)
T d1ek0a_          70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDMLQ  122 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccc--cccceeeeeccccccc
Confidence            345678899999999986544433 233333333322  2458999999999764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-14  Score=105.29  Aligned_cols=118  Identities=17%  Similarity=0.052  Sum_probs=74.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      +...+|+++|.+|||||||++++++........   ++........+.. .....+.++|++|...+.           .
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~---~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~   68 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------R   68 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC---CCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-----------T
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccc---cceeeceeeeeeccCcceEEEeecccccccch-----------h
Confidence            445899999999999999999999765422211   1111111111221 122467899999976543           2


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ....++..+|++++|+|++++-+...  ..+...+... ..  ..|+++|+||+|+..
T Consensus        69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~--~~piilvgnK~Dl~~  123 (183)
T d1mh1a_          69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CP--NTPIILVGTKLDLRD  123 (183)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TSCEEEEEECHHHHT
T ss_pred             hhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CC--CCcEEEEeecccchh
Confidence            22356788999999999985443332  2234444433 22  348999999999765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.2e-14  Score=103.37  Aligned_cols=114  Identities=17%  Similarity=0.082  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCcccee-eeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|||||||+++++.......    ...|.. ........ .....+.+|||+|......           ..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~   67 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-----------VR   67 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-----------TG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCc----cCCceeecccccccccceEEeeccccccccccccc-----------cc
Confidence            5899999999999999999987654211    111222 22222222 1234678999999764332           22


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-H-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-E-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...+.++|++++|+|++++-+... . .+...+.. ...  ..|+++|+||+|+..
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~--~~~iilVgnK~Dl~~  120 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCP--NTKMLLVGCKSDLRT  120 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCT--TCEEEEEEECGGGGG
T ss_pred             cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cCC--cceEEEEEecccccc
Confidence            356788999999999985433332 2 22333333 232  358999999999765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.2e-14  Score=102.79  Aligned_cols=129  Identities=19%  Similarity=0.111  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+|+|.+|||||||++.++........  ..++........... .+  ..+.++||||....           ....
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~~   72 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------RSLR   72 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeeeeeeeeeee-cCceeeEeeecccCccee-----------hhhh
Confidence            68999999999999999999876532111  111122222222222 33  46789999996542           1344


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc--ccceEEEEEeCCCCCCCC--hhhHHHHhc
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN--DETLEDYLG  162 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~~~--~~~~~~~l~  162 (230)
                      ......++++++++|.+++.+... ..+++.+.+.....  ...|+++|+||+|+.+..  .....++.+
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~  142 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR  142 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH
Confidence            466778899999999985433332 44555555544321  235899999999975421  234455554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=1.5e-13  Score=101.96  Aligned_cols=117  Identities=18%  Similarity=0.232  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCcccee-----eeeEE----------------------EEeeCCeEE
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTST-----CEMQR----------------------TVLKDGQVV   71 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~-----~~~~~----------------------~~~~~~~~~   71 (230)
                      .+|+++|+.++|||||+++|++......... ....+..     .....                      ......+.+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   88 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI   88 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence            7999999999999999999997432111000 0000000     00000                      000012468


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970           72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  150 (230)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~  150 (230)
                      .++||||+.+           +...+......+|++++|+|+.+.+ ....+..+..+.. ++.   +++++++||+|+.
T Consensus        89 ~iiD~PGH~d-----------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i---~~iIV~vNK~Dl~  153 (205)
T d2qn6a3          89 SFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGV---KNLIIVQNKVDVV  153 (205)
T ss_dssp             EEEECSCHHH-----------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECGGGS
T ss_pred             EEeccchHHH-----------HHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCC---ceeeeccccCCCc
Confidence            9999999643           3344455667889999999998776 5455555555544 342   3789999999998


Q ss_pred             C
Q 026970          151 E  151 (230)
Q Consensus       151 ~  151 (230)
                      .
T Consensus       154 ~  154 (205)
T d2qn6a3         154 S  154 (205)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.5e-14  Score=109.60  Aligned_cols=121  Identities=18%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCccceeeeeEEEEeeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDG   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~   68 (230)
                      +..+|+++|+.++|||||+.+|+.....                             .......++|.......+.+ .+
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~   83 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK   83 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CC
Confidence            3479999999999999999998531100                             00011356777777777776 77


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEE
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI  141 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i  141 (230)
                      +++.|+||||+.++.           .-+......+|++++|+|+...       ........+.... .+|   .++++
T Consensus        84 ~~i~iiDtPGH~df~-----------~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~-~~g---v~~ii  148 (239)
T d1f60a3          84 YQVTVIDAPGHRDFI-----------KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQLI  148 (239)
T ss_dssp             EEEEEEECCCCTTHH-----------HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEEE
T ss_pred             EEEEEEECCCcHHHH-----------HHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH-HcC---CCeEE
Confidence            999999999998632           4444566788999999998743       2223344443333 334   24689


Q ss_pred             EEEeCCCCCCCCh
Q 026970          142 VVFTGGDELEDND  154 (230)
Q Consensus       142 vv~tk~D~~~~~~  154 (230)
                      +++||+|+...+.
T Consensus       149 v~iNKmD~~~~d~  161 (239)
T d1f60a3         149 VAVNKMDSVKWDE  161 (239)
T ss_dssp             EEEECGGGGTTCH
T ss_pred             EEEECCCCCCCCH
Confidence            9999999886443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.8e-12  Score=100.33  Aligned_cols=130  Identities=16%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCc-cceeeeeEE-----------------------------------
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEMQR-----------------------------------   62 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~~~~~-----------------------------------   62 (230)
                      .+.|+|+|..++|||||||+|+|....+.+..... +.....+..                                   
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            46899999999999999999999886444332211 000001110                                   


Q ss_pred             -------------EEeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHHhhcCCcc-EEEEEEeCCCCCCHHHHHHHH
Q 026970           63 -------------TVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCIGMAKDGIH-AVLVVFSVRSRFSQEEEAALH  126 (230)
Q Consensus        63 -------------~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~il~v~d~~~~~~~~~~~~l~  126 (230)
                                   +..+.-..+.++||||+.......  ......+...+..+...++ ++++|.++...++...  ...
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~~  183 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--ALK  183 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HHH
Confidence                         111123458999999998644322  1122233333333334444 5566667764554433  333


Q ss_pred             HHHHHhcccccceEEEEEeCCCCCCC
Q 026970          127 SLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       127 ~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      +++.. . +...++++|+||+|...+
T Consensus       184 ~~~~~-~-~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         184 IAKEV-D-PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHH-C-TTCSSEEEEEECGGGSCT
T ss_pred             HHHHh-C-cCCCceeeEEeccccccc
Confidence            33332 2 223479999999999864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-13  Score=99.31  Aligned_cols=119  Identities=22%  Similarity=0.161  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      .+|+++|.+|+|||||++++++....... ...++........+.. ++  ..+.++|+|+...     .   .++  ..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~~~~g-----~---e~~--~~   71 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDS-DCEVLGEDTYERTLMV-DGESATIILLDMWENKG-----E---NEW--LH   71 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCC-C---CCTTEEEEEEEE-TTEEEEEEEECCTTTTH-----H---HHH--HH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccc-cccceeeecceeeecc-CCceeeeeeeccccccc-----c---ccc--cc
Confidence            68999999999999999999976532111 1111111111112222 33  3567899886431     1   111  22


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ..++..+|++++|+|++++.+... ..+...+....+ ....|+++|+||+|+..
T Consensus        72 ~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~  125 (172)
T d2g3ya1          72 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR  125 (172)
T ss_dssp             HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred             cccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccc
Confidence            356788999999999985433322 233333333222 23458999999999764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.51  E-value=2.3e-13  Score=100.14  Aligned_cols=119  Identities=16%  Similarity=0.243  Sum_probs=74.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEE----------------------EeeCCeEEEEE
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRT----------------------VLKDGQVVNVI   74 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~----------------------~~~~~~~~~li   74 (230)
                      +..+|+++|+.++|||||+|+|+|...... .....+.|....+...                      .......+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            346899999999999999999998532111 0111222222211111                      00112458999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ||||+.           .+...+......+|++++|+++.+.. .....+.+..+... +.   +++++++||+|+.+
T Consensus        84 DtPGh~-----------~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~d  146 (195)
T d1kk1a3          84 DAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD  146 (195)
T ss_dssp             ECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred             ccchhh-----------hhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccchh
Confidence            999953           34444555566789999999998665 44445555555553 42   36889999999876

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=3.4e-13  Score=98.04  Aligned_cols=129  Identities=13%  Similarity=0.182  Sum_probs=72.0

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   95 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (230)
                      ....++|+|+|.+|||||||+|+|++........ ..+.+.. .........+......++++.................
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQ-LINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC--------------C-CEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeec-cccccee-eccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            4456999999999999999999999976533222 1222222 2222222345555555555554433333333333333


Q ss_pred             HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...........++++.+............+..+...     ..++++++||+|+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~k~D~~~  141 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLA  141 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             hhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-----cccccchhhhhhccC
Confidence            333334445567777777767777676666666554     237899999999987

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=6.2e-14  Score=101.57  Aligned_cols=123  Identities=20%  Similarity=0.270  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      ..|+|+|.+|||||||+|+|+|.......  ..+.|...............+.++|+||.....  ..............
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   81 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITS--RKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECC--CCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec--cCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence            46899999999999999999998764332  233344444343444467788889999975311  11111111111222


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      ....+++++++.+.. ............+.+.     ..+.++|+||+|.+..
T Consensus        82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~-----~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLREG-----KAPVILAVNKVDNVQE  128 (179)
T ss_dssp             CCCCEEEEEEEEETT-CCCHHHHHHHHHHHSS-----SSCEEEEEESTTTCCC
T ss_pred             chhhcceeEEEEecC-ccchhHHHHHHHhhhc-----cCceeeeeeeeeccch
Confidence            334567888888887 4444444443333332     3478999999998863

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.50  E-value=4.9e-13  Score=96.47  Aligned_cols=118  Identities=14%  Similarity=0.081  Sum_probs=72.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ++..+|+|+|.+|||||||+++|.+........ ..+    ....... ..+..+.++|++|.......           
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~----~~~~~~~-~~~~~~~~~d~~~~~~~~~~-----------   75 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG----SNVEEIV-INNTRFLMWDIGGQESLRSS-----------   75 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSC----SSCEEEE-ETTEEEEEEECCC----CGG-----------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-ccc----eeEEEEe-ecceEEEEeccccccccccc-----------
Confidence            345899999999999999999999887533221 111    1112222 25678999999987543322           


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      .......+++++++++.++..+....................|+++|+||+|+..
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  130 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE  130 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccc
Confidence            2234556789999999985554443222222222122334568999999999865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.49  E-value=1.3e-12  Score=102.58  Aligned_cols=137  Identities=19%  Similarity=0.239  Sum_probs=72.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCcccee---ee------------------------------------
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST---CE------------------------------------   59 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~---~~------------------------------------   59 (230)
                      .++|+|+|..++|||||||+|+|....+++...  +|..   ..                                    
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~--~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGI--VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC----------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCc--cccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHH
Confidence            368999999999999999999998864333211  1110   00                                    


Q ss_pred             --------------------eEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHHhhcCCccEEEE-EEeCCCC
Q 026970           60 --------------------MQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCIGMAKDGIHAVLV-VFSVRSR  116 (230)
Q Consensus        60 --------------------~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~il~-v~d~~~~  116 (230)
                                          ...+....-..+.+|||||+........  .....+...+..+...++.+++ |+++...
T Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~  181 (306)
T d1jwyb_         102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (306)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccc
Confidence                                0011111234688999999986443221  1222233344444455666544 4565433


Q ss_pred             CCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970          117 FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  162 (230)
Q Consensus       117 ~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~  162 (230)
                      +....  ....+++. . +...++++|+||+|.... ......++.
T Consensus       182 ~~~~~--~~~~~~~~-~-~~~~r~i~Vitk~D~~~~-~~~~~~~l~  222 (306)
T d1jwyb_         182 LANSD--ALQLAKEV-D-PEGKRTIGVITKLDLMDK-GTDAMEVLT  222 (306)
T ss_dssp             STTCS--HHHHHHHH-C-SSCSSEEEEEECTTSSCS-SCCCHHHHT
T ss_pred             ccccH--HHHHHHHh-C-cCCCeEEEEEeccccccc-hhHHHHHHh
Confidence            33222  33334443 2 223479999999999854 233444444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.48  E-value=3e-13  Score=95.82  Aligned_cols=113  Identities=13%  Similarity=0.074  Sum_probs=71.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+|+++|++|||||||+|+|++........     +......... .....+.++|+||....           ......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~d~~g~~~~-----------~~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVE-YKNISFTVWDVGGQDKI-----------RPLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCC-----CSSCCEEEEE-CSSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ceeeEEEEEe-eeeEEEEEecCCCcccc-----------hhhhhh
Confidence            479999999999999999998765422211     1111122222 25678999999997642           123335


Q ss_pred             hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970          100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                      .+..++++++++|..++.+...  ...++.+...  .....+++++.||.|...
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~  115 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPN  115 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred             hhccceeEEEEEEecChHHHHH--HHHHHHHHHHhhcccCceEEEEeecccccc
Confidence            5677899999999975544332  2222222222  223458999999999875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1e-13  Score=100.20  Aligned_cols=111  Identities=22%  Similarity=0.174  Sum_probs=69.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      ..+|+++|.+|||||||++++++.....  . . + |....+......++  ..+.+|||+|...     .         
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~--~-~-~-t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~-----~---------   65 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQV--L-E-K-TESEQYKKEMLVDGQTHLVLIREEAGAPD-----A---------   65 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCC--C-C-C-SSCEEEEEEEEETTEEEEEEEEECSSCCC-----H---------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC--c-C-C-ccceeEEEEeecCceEEEEEEeecccccc-----c---------
Confidence            4899999999999999999998876421  1 1 1 11111221111244  4688999999653     1         


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDEL  150 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~  150 (230)
                        ..+..+|++++|+|++++-+... ..+..++...... ....|+++|+||.|.-
T Consensus        66 --~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d  119 (175)
T d2bmja1          66 --KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  119 (175)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred             --ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence              12345799999999985543333 3444555443222 1234789999988864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.4e-13  Score=107.59  Aligned_cols=116  Identities=22%  Similarity=0.304  Sum_probs=79.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccc--------------cCCCCccceeeeeEEEEee---------------CCe
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLK---------------DGQ   69 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~---------------~~~   69 (230)
                      -++|+++|+.++|||||+.+|+.......              .....+.|.........+.               +..
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            46799999999999999999963221100              0112344544433333221               234


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  149 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~  149 (230)
                      .+.++||||+.++.       .+...++    .-+|++++|+|+.+++...+...++...+. +    .|+++++||+|+
T Consensus        97 ~inliDtPGh~dF~-------~ev~~al----~~~D~allVVda~eGv~~qT~~~~~~a~~~-~----~p~i~viNKiDr  160 (341)
T d1n0ua2          97 LINLIDSPGHVDFS-------SEVTAAL----RVTDGALVVVDTIEGVCVQTETVLRQALGE-R----IKPVVVINKVDR  160 (341)
T ss_dssp             EEEEECCCCCCSSC-------HHHHHHH----HTCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CEEEEEEECHHH
T ss_pred             EEEEEcCCCcHHHH-------HHHHHHH----hhcCceEEEEecccCcchhHHHHHHHHHHc-C----CCeEEEEECccc
Confidence            68999999999876       2333333    345999999999989999988888776664 2    389999999997


Q ss_pred             C
Q 026970          150 L  150 (230)
Q Consensus       150 ~  150 (230)
                      .
T Consensus       161 ~  161 (341)
T d1n0ua2         161 A  161 (341)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.45  E-value=3.3e-12  Score=90.98  Aligned_cols=117  Identities=15%  Similarity=0.083  Sum_probs=75.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   97 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (230)
                      ...+|+++|.+|||||||+|++++......     ..|......... ..+..+.++|+||.....           ...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~   66 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVT-YKNLKFQVWDLGGLTSIR-----------PYW   66 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEE-ETTEEEEEEEECCCGGGG-----------GGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeec-cCceEEEEeecccccccc-----------ccc
Confidence            448999999999999999999998765221     123333333333 367889999999976532           222


Q ss_pred             HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970           98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  152 (230)
Q Consensus        98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (230)
                      .......++++++++..+...... .......... ......++++|+||.|+...
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~  121 (169)
T d1upta_          67 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQA  121 (169)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC
T ss_pred             hhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeecccccc
Confidence            245567789999999874444333 2222222221 12234589999999998763

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.42  E-value=2.6e-13  Score=101.93  Aligned_cols=117  Identities=23%  Similarity=0.305  Sum_probs=72.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCccceeeeeEEEEeeCCe
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDGQ   69 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~~   69 (230)
                      ..+|+++|+.++|||||+.+|+.....                             .......+.|.......+.+ ++.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~   81 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY   81 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CCc
Confidence            479999999999999999988632110                             01122345555555555554 678


Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH-------HHHHHHHHHHHhcccccceEEE
Q 026970           70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE-------EEAALHSLQTLFGKKIFDYMIV  142 (230)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~-------~~~~l~~l~~~~~~~~~~~~iv  142 (230)
                      .+.++||||+.++.           ..+......+|++++|+|+.+.....       ..+.+... +.++   .+++++
T Consensus        82 ~i~iiDtPGH~df~-----------~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~~~---~~~iIv  146 (224)
T d1jnya3          82 FFTIIDAPGHRDFV-----------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTMG---LDQLIV  146 (224)
T ss_dssp             EEEECCCSSSTTHH-----------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHTT---CTTCEE
T ss_pred             eeEEeeCCCcHHHH-----------HHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HHhC---CCceEE
Confidence            99999999997642           44445667789999999998653222       22222222 2233   236899


Q ss_pred             EEeCCCCCC
Q 026970          143 VFTGGDELE  151 (230)
Q Consensus       143 v~tk~D~~~  151 (230)
                      ++||+|+..
T Consensus       147 ~iNK~D~~~  155 (224)
T d1jnya3         147 AVNKMDLTE  155 (224)
T ss_dssp             EEECGGGSS
T ss_pred             EEEcccCCC
Confidence            999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=2.3e-12  Score=91.32  Aligned_cols=113  Identities=10%  Similarity=0.046  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  100 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (230)
                      +|+++|++|||||||+|+|++.....     ..+|.......... .+..+.++|++|.....           ......
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RLWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEECC-TTCCEEEEECCCSGGGG-----------GGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-----eeceeeEeEEEecc-CCeeEEEEeeccchhhh-----------hhHhhh
Confidence            79999999999999999999876421     12233333333332 56778899999875422           223355


Q ss_pred             cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          101 KDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       101 ~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ...++++++++|..+....... .++..... .......|++++.+|.|+..
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~~~k~d~~~  115 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFN-IAELKDVPFVILGNKIDAPN  115 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHT-CTTTTTCCEEEEEECTTSSS
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhh-hhccCCceEEEEeccccccc
Confidence            6778999999999755443332 22222222 12334558999999999875

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.34  E-value=3.5e-12  Score=96.73  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=65.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCccceeeeeEEEEeeCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDG   68 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (230)
                      +..+|+++|+.++|||||+.+|+......                             ......+.+.........+ .+
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-cc
Confidence            34679999999999999999994211100                             0011223444433333443 66


Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhcccccceEE
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMI  141 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~i  141 (230)
                      ..+.++||||+.++.           ..+......+|++++|+++.+..       .......+..+.. ++   .++++
T Consensus       102 ~~i~~iDtPGH~df~-----------~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~---i~~ii  166 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QG---INHLV  166 (245)
T ss_dssp             EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TT---CSSEE
T ss_pred             ceeeeecccccccch-----------hhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cC---CCeEE
Confidence            789999999997654           33334556789999999997542       1123344433333 34   23689


Q ss_pred             EEEeCCCCCC
Q 026970          142 VVFTGGDELE  151 (230)
Q Consensus       142 vv~tk~D~~~  151 (230)
                      +++||+|+..
T Consensus       167 v~iNKmD~~~  176 (245)
T d1r5ba3         167 VVINKMDEPS  176 (245)
T ss_dssp             EEEECTTSTT
T ss_pred             EEEEcCCCCc
Confidence            9999999874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.34  E-value=1.2e-11  Score=89.40  Aligned_cols=116  Identities=13%  Similarity=0.072  Sum_probs=69.5

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   96 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (230)
                      .+..+|+|+|.+|||||||+|+|++.......     .+.......+.. .+..+.++|++|........          
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------   74 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQARRVW----------   74 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CCGG----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-----cccccceeEEEe-cccccccccccchhhhhhHH----------
Confidence            45689999999999999999999987652211     122222222332 56778899999876543222          


Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE  151 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (230)
                       .......++++++++..+.......  ...+.....  .....|++++.||.|...
T Consensus        75 -~~~~~~~~~~~~~~d~~d~~~~~~~--~~~~~~~~~~~~~~~~~~li~~~K~D~~~  128 (186)
T d1f6ba_          75 -KNYLPAINGIVFLVDCADHERLLES--KEELDSLMTDETIANVPILILGNKIDRPE  128 (186)
T ss_dssp             -GGGGGGCSEEEEEEETTCGGGHHHH--HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             -hhhhcccceeeeeeeccCccchHHH--HHHHHHhhcccccCCCceEEEEeccCccc
Confidence             2455667899999998744333321  112222222  223468999999999865

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=2.4e-11  Score=89.07  Aligned_cols=114  Identities=16%  Similarity=0.078  Sum_probs=71.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|.+|||||||++.+..    ...   ..+|.......+.. ....+.++|++|.....           ....
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f----~~~---~~pTiG~~~~~~~~-~~~~~~~~D~~gq~~~~-----------~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI----IHG---QDPTKGIHEYDFEI-KNVPFKMVDVGGQRSER-----------KRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH----HHS---CCCCSSEEEEEEEE-TTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc----CCC---CCCeeeeEEEEEee-eeeeeeeecccceeeec-----------cccc
Confidence            37899999999999999999931    111   11244444444554 67899999999975422           3334


Q ss_pred             hhcCCccEEEEEEeCCCCCCH--------HHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQ--------EEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~--------~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (230)
                      .++..+++++++++.++....        ........+...+..  ....|+++++||+|+++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            667788999999988643221        123334444443332  23459999999999764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.24  E-value=5.3e-11  Score=88.88  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=76.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|..|||||||++.+.....    .    +|.......+.. ++..+.++|+.|.....           ....
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~----pTiG~~~~~~~~-~~~~~~~~D~~Gq~~~r-----------~~w~   65 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----V----LTSGIFETKFQV-DKVNFHMFDVGGQRDER-----------RKWI   65 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----C----CCCSCEEEEEEE-TTEEEEEEECCCSTTTT-----------TGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----C----CCCCeEEEEEEE-CcEEEEEEecCccceec-----------cchh
Confidence            37899999999999999999853321    1    133333333443 67899999999976543           2223


Q ss_pred             hhcCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      .++.++++++++++.++.        -.....+.+..+...+..+  ...|+++++||+|++.
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            677889999999997621        1122334445555555533  2358999999999875

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=1.2e-11  Score=96.61  Aligned_cols=92  Identities=18%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC----------------CeEEEEEeCCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFD   81 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~   81 (230)
                      ...+|+|+|.|+||||||+|+|++...... ...+.+|..+....+..++                ...+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~-anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCc-CCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            347999999999999999999997654222 2355667766555444322                23688999999987


Q ss_pred             CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      .......+..+|...+    +.+|++++|+++.
T Consensus        88 gA~~g~GLGn~fL~~i----r~~d~lihVV~~f  116 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHV----RAVDAIYQVVRAF  116 (296)
T ss_dssp             CCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred             ccccccccHHHHHHHh----hccceeEEEEecc
Confidence            6655555555666554    4559999999874

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.17  E-value=6.2e-12  Score=97.32  Aligned_cols=88  Identities=19%  Similarity=0.125  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCCCCCCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS   83 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~   83 (230)
                      .+|+|+|.|+||||||+|+|++....  ....+.+|..+....+..++.                -.+.++|.||+....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~--~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCc--cccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            68999999999999999999987642  223455666666655543222                247899999998643


Q ss_pred             CCcHHHHHHHHHHHHhhcCCccEEEEEEeC
Q 026970           84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSV  113 (230)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~  113 (230)
                      +....+..+|.+.+.    .+|++++|+|+
T Consensus        81 ~~g~Glg~~FL~~ir----~~d~LihVVr~  106 (278)
T d1jala1          81 SKGEGLGNKFLANIR----ETDAIGHVVRC  106 (278)
T ss_dssp             HHHGGGTCCHHHHHH----TCSEEEEEEEC
T ss_pred             ccCCCccHHHHHHHH----hccceEEEeec
Confidence            333334455555554    45899999986

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=1.3e-11  Score=97.45  Aligned_cols=88  Identities=15%  Similarity=0.003  Sum_probs=43.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEE-e----------------------eCCeEEEEEeCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV-L----------------------KDGQVVNVIDTP   77 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~----------------------~~~~~~~liDtP   77 (230)
                      .|+|+|.|+||||||+|+|++......  ..+.+|..+...... .                      .....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~--nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIA--NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchh--cCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            699999999999999999999865222  233445443322110 0                      012368999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970           78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  114 (230)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~  114 (230)
                      |+..........    ...+-.....+|++++|+|+.
T Consensus        80 Gli~ga~~g~~~----~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEGRGL----GNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETT
T ss_pred             Ccccchhcccch----HHHHHHhhccceEEEEEeccc
Confidence            997643332222    222334456789999999975

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=2.6e-10  Score=83.26  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=74.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|..|||||||++++..... .     ..+|.......+.. ....+.++|++|.....           ....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~-----~~pTiG~~~~~~~~-~~~~~~~~d~~g~~~~~-----------~~~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG-S-----GVPTTGIIEYPFDL-QSVIFRMVDVGGQRSER-----------RKWI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS-S-----CCCCCSCEEEEEEC-SSCEEEEEECCCSTTGG-----------GGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC-C-----CCceeeEEEEEEec-cceeeeecccccccccc-----------cccc
Confidence            47899999999999999999975542 1     11244344444443 66789999999986543           3333


Q ss_pred             hhcCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  151 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~  151 (230)
                      .++.++++++++++..+..        .......++.+...+...  ...|+++++||.|+..
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~  126 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE  126 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHH
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhh
Confidence            6778899999999875321        111223333333333222  3458999999999763

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.12  E-value=8.1e-11  Score=90.66  Aligned_cols=69  Identities=22%  Similarity=0.336  Sum_probs=45.5

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV   89 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~   89 (230)
                      .....+|+++|.|+||||||+|+|.+.....++. .+++|...+...    .+..+.++||||+..+....+..
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~i~----~~~~~~l~DTPGi~~p~~~~~~~  177 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVK----VGKELELLDTPGILWPKFEDELV  177 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCHHH
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECC-cccccccceEEE----CCCCeEEecCCCccccCCccHHH
Confidence            4456899999999999999999999988655543 456676654432    35679999999998776665543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=1.5e-10  Score=84.22  Aligned_cols=111  Identities=12%  Similarity=0.090  Sum_probs=70.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   98 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (230)
                      ..+|+++|..|||||||++.+.....+         |.......+.. ....+.++||.|.....           ....
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~---------t~~~~~~~~~~-~~~~~~i~D~~Gq~~~~-----------~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA---------GTGIVETHFTF-KDLHFKMFDVGGQRSER-----------KKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC---------CCSEEEEEEEE-TTEEEEEEEECCSGGGG-----------GGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC---------CccEEEEEEEe-eeeeeeeeccccccccc-----------cchh
Confidence            368999999999999999998744321         11112222332 67789999999976432           3444


Q ss_pred             hhcCCccEEEEEEeCCCCCCH--------HHHHHHHHHHHHhcc--cccceEEEEEeCCCCC
Q 026970           99 MAKDGIHAVLVVFSVRSRFSQ--------EEEAALHSLQTLFGK--KIFDYMIVVFTGGDEL  150 (230)
Q Consensus        99 ~~~~~~~~il~v~d~~~~~~~--------~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~  150 (230)
                      .++..++++++|+|.++..+.        ........+...+..  ....|+++++||+|..
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence            678899999999987532211        112222223332221  2234899999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=8.1e-11  Score=87.12  Aligned_cols=62  Identities=23%  Similarity=0.270  Sum_probs=40.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccccc-C-----CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-A-----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   84 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~-~-----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (230)
                      ....+|+|++|||||||||+|++.....++ .     ....+|...+.+.+.  .  ...++||||+.++..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~--~--gg~iiDTPG~r~~~l  162 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD--F--GGYVVDTPGFANLEI  162 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT--T--SCEEESSCSSTTCCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEEC--C--CcEEEeCCccccccc
Confidence            468899999999999999999987543222 1     123345555555432  2  247999999987553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=5.7e-10  Score=82.09  Aligned_cols=133  Identities=18%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC---------CCcc---------ceeeeeEEE----------
Q 026970           12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---------SSGV---------TSTCEMQRT----------   63 (230)
Q Consensus        12 ~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~---------~~~~---------t~~~~~~~~----------   63 (230)
                      +.-++..+..|+++|++||||||.+-.|+..-. ..+..         ..+.         .....++..          
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~   82 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVA   82 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHH
Confidence            344556667999999999999999877753211 00000         0000         000000000          


Q ss_pred             ------EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc----CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 026970           64 ------VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG  133 (230)
Q Consensus        64 ------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~  133 (230)
                            ...++..+.||||||....   +.....++........    ..++-+++|+++..  ...+........+.++
T Consensus        83 ~~~~~~~~~~~~d~ilIDTaGr~~~---d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~--~~~~~~~~~~~~~~~~  157 (213)
T d1vmaa2          83 FDAVAHALARNKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT--GQNGLVQAKIFKEAVN  157 (213)
T ss_dssp             HHHHHHHHHTTCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG--HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCEEEEeccccccc---hHHHHHHHHHHHhhhhhccccccceeEEeecccc--CcchhhhhhhhccccC
Confidence                  0013456899999997643   3444444444443322    23578999999862  2222222222222222


Q ss_pred             ccccceEEEEEeCCCCCCCChh
Q 026970          134 KKIFDYMIVVFTGGDELEDNDE  155 (230)
Q Consensus       134 ~~~~~~~ivv~tk~D~~~~~~~  155 (230)
                           ..-+++||.|....-+.
T Consensus       158 -----~~~lI~TKlDe~~~~G~  174 (213)
T d1vmaa2         158 -----VTGIILTKLDGTAKGGI  174 (213)
T ss_dssp             -----CCEEEEECGGGCSCTTH
T ss_pred             -----CceEEEecccCCCcccH
Confidence                 56799999998754333

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.92  E-value=4.5e-09  Score=78.92  Aligned_cols=77  Identities=14%  Similarity=0.056  Sum_probs=42.5

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  148 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D  148 (230)
                      ..+.++|+||+.+..    .......... . ....+.+++++|+.........................|.++|+||+|
T Consensus        95 ~~~~~id~~g~~~~~----~~~~~~~~~~-~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETF----LFHEFGVRLM-E-NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHH----HHSHHHHHHH-H-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhHH----HHHHHHHHHH-h-hccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence            358999999986421    0111111111 1 224567889999864555444332222222111223347999999999


Q ss_pred             CCC
Q 026970          149 ELE  151 (230)
Q Consensus       149 ~~~  151 (230)
                      +..
T Consensus       169 ~~~  171 (244)
T d1yrba1         169 LLS  171 (244)
T ss_dssp             GCC
T ss_pred             ccc
Confidence            987

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.89  E-value=3.6e-09  Score=77.41  Aligned_cols=81  Identities=17%  Similarity=0.140  Sum_probs=45.4

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  146 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk  146 (230)
                      +..+.+|||||....+.........+.+.+.... ..++-+++|+++...  .++........+.++     ..-+++||
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI~TK  160 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVG-----LTGVIVTK  160 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHC-----CSEEEEEC
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC--chHHHHHHHhhhccC-----CceEEEec
Confidence            4578999999986543222222233333333221 356789999999733  233222222333333     45689999


Q ss_pred             CCCCCCChh
Q 026970          147 GDELEDNDE  155 (230)
Q Consensus       147 ~D~~~~~~~  155 (230)
                      .|....-+.
T Consensus       161 lDet~~~G~  169 (207)
T d1okkd2         161 LDGTAKGGV  169 (207)
T ss_dssp             TTSSCCCTT
T ss_pred             cCCCCCccH
Confidence            998754333

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.89  E-value=2.7e-10  Score=84.50  Aligned_cols=60  Identities=28%  Similarity=0.422  Sum_probs=35.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccccc----C--CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR----A--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   83 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~----~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (230)
                      ....+|+|++|||||||||+|++.....++    .  ....+|.....+.  . ++  -.++||||+.++.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~-~g--g~iiDTPG~r~~~  162 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--T-SG--GLVADTPGFSSLE  162 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--E-TT--EEEESSCSCSSCC
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--c-CC--CEEEECCcccccc
Confidence            357789999999999999999987543322    1  1223444444442  2 33  3689999998755

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.88  E-value=5.2e-09  Score=76.75  Aligned_cols=128  Identities=15%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCcccee------------------eeeEEEE-----------
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST------------------CEMQRTV-----------   64 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~------------------~~~~~~~-----------   64 (230)
                      .+...+..|+++|++|+||||++-.|...-. ..+....-+|.+                  ..+....           
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~   85 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYK-KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKR   85 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHHH-HTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHH
Confidence            4445667899999999999999877753211 000000000000                  0000000           


Q ss_pred             -----eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 026970           65 -----LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY  139 (230)
Q Consensus        65 -----~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~  139 (230)
                           ...+..+.+|||||....+ .......++.......  .++-+++|+++....  ..........+.++     .
T Consensus        86 a~~~~~~~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~--~~~~~~~~~~~~~~-----~  155 (211)
T d1j8yf2          86 GVEKFLSEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQ--KAYDLASKFNQASK-----I  155 (211)
T ss_dssp             HHHHHHHTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGG--GHHHHHHHHHHHCT-----T
T ss_pred             HHHHhhccCCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCc--chHHHHhhhhcccC-----c
Confidence                 0134578999999975322 1122234444444333  356889999986332  23222222333222     3


Q ss_pred             EEEEEeCCCCCCC
Q 026970          140 MIVVFTGGDELED  152 (230)
Q Consensus       140 ~ivv~tk~D~~~~  152 (230)
                      --+++||.|....
T Consensus       156 ~~lI~TKlDet~~  168 (211)
T d1j8yf2         156 GTIIITKMDGTAK  168 (211)
T ss_dssp             EEEEEECTTSCSC
T ss_pred             ceEEEecccCCCc
Confidence            5588999998754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=6.8e-09  Score=81.39  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      +..++|++.|+||||||||++.|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            456999999999999999999997

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=6.6e-09  Score=76.09  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc----CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  143 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv  143 (230)
                      +..+.+|||||....   +....+++.+......    ..++.+++|+++..  ...+........+.++     .--++
T Consensus        91 ~~d~ilIDTaGr~~~---d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~--~~~~~~~~~~~~~~~~-----~~~lI  160 (211)
T d2qy9a2          91 NIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST--GQNAVSQAKLFHEAVG-----LTGIT  160 (211)
T ss_dssp             TCSEEEECCCCCGGG---HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGG--THHHHHHHHHHHHHSC-----CCEEE
T ss_pred             CCCEEEeccCCCccc---cHHHHHHHHHHHHHHhhhcccCcceeeeehhccc--CcchHHHHhhhhhccC-----CceEE
Confidence            446899999997532   2334444444433221    13578899999862  2333222222223333     56799


Q ss_pred             EeCCCCCCCChhhHHH
Q 026970          144 FTGGDELEDNDETLED  159 (230)
Q Consensus       144 ~tk~D~~~~~~~~~~~  159 (230)
                      +||.|....-+..+.-
T Consensus       161 lTKlDe~~~~G~~l~~  176 (211)
T d2qy9a2         161 LTKLDGTAKGGVIFSV  176 (211)
T ss_dssp             EECCTTCTTTTHHHHH
T ss_pred             EeecCCCCCccHHHHH
Confidence            9999987543443333

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.80  E-value=9.8e-09  Score=75.15  Aligned_cols=73  Identities=21%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970           68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      +..+.+|||||....   +.....++.+.....  .++-+++|+++...  .........+.+.++     ..-+++||.
T Consensus        92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TKl  159 (207)
T d1ls1a2          92 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTKL  159 (207)
T ss_dssp             TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred             cCcceeecccccchh---hhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEeec
Confidence            457899999998643   344556666555444  45788999998633  344444444444444     456999999


Q ss_pred             CCCCC
Q 026970          148 DELED  152 (230)
Q Consensus       148 D~~~~  152 (230)
                      |....
T Consensus       160 De~~~  164 (207)
T d1ls1a2         160 DGDAR  164 (207)
T ss_dssp             GGCSS
T ss_pred             Ccccc
Confidence            98754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.63  E-value=5.6e-08  Score=75.97  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ...++|++.|++|+|||||++.|..
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHH
Confidence            4568999999999999999999873

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.6e-07  Score=68.65  Aligned_cols=66  Identities=27%  Similarity=0.299  Sum_probs=47.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEEe--eCCeEEEEEeCCCCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFS   83 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~   83 (230)
                      +...|.++|+.++|||+|+|.|+|... +..+....++|..........  ..+..+.++||.|+.+..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            456899999999999999999998653 334444445566555443332  244579999999998754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.88  E-value=2.5e-06  Score=60.28  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +|+|+|++|+|||||++.|++.-.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCC
Confidence            799999999999999999997543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.4e-05  Score=56.63  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +-+.+++.|.-|||||||+|.++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            3478899999999999999999754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.85  E-value=4.2e-06  Score=60.61  Aligned_cols=26  Identities=23%  Similarity=0.202  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +-.++|+|++|+|||||++.|+|...
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccc
Confidence            35889999999999999999999754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=6.7e-06  Score=60.65  Aligned_cols=28  Identities=36%  Similarity=0.438  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      .-.++|+|++|+|||||++.|.|...+.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~~p~   53 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLETIT   53 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence            3689999999999999999999976533

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.80  E-value=7.2e-06  Score=60.89  Aligned_cols=27  Identities=26%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++|+|++|+|||||++.|+|...+
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            368999999999999999999998653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.79  E-value=7.5e-06  Score=60.32  Aligned_cols=27  Identities=30%  Similarity=0.241  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++++|++|||||||++.|.|...+
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~~p   57 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLDKP   57 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCcchhhHhccCCCCC
Confidence            368999999999999999999997643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.77  E-value=7.6e-06  Score=60.84  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++|+|++|+|||||+++|+|...+
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            368999999999999999999998653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.77  E-value=1e-05  Score=60.26  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++++|++|+|||||++.|+|...
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            347999999999999999999998754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.77  E-value=8.8e-06  Score=60.23  Aligned_cols=28  Identities=32%  Similarity=0.396  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAFK   46 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~~   46 (230)
                      .-.++++|++|+|||||++.|.|...+.
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~~p~   59 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLEEPT   59 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence            3589999999999999999999976543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=1.8e-06  Score=62.83  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..|+++|.|||||||+.+.|+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999999974

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.73  E-value=7.6e-06  Score=57.84  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .++|+|+|++|+|||||++.|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            379999999999999999999743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.73  E-value=3.7e-06  Score=63.20  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++|+|++|+|||||++.|+|...+
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~~p   56 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFLKA   56 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCcC
Confidence            358899999999999999999998653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=1.1e-05  Score=60.05  Aligned_cols=26  Identities=31%  Similarity=0.391  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.|+|+|++|+|||||++.|+|...
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            36899999999999999999999754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=9e-06  Score=56.68  Aligned_cols=22  Identities=14%  Similarity=0.311  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.|+|+|.+|||||||++.|+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5899999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.2e-05  Score=59.62  Aligned_cols=27  Identities=19%  Similarity=0.139  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++++|++|+|||||++.|.|...+
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~~p   57 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLERP   57 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCccc
Confidence            368999999999999999999997643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.70  E-value=1.1e-05  Score=59.71  Aligned_cols=25  Identities=40%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           21 TVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .++++|++|+|||||++.|.|...+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            6789999999999999999997653

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.70  E-value=8.3e-06  Score=59.97  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++++|++|+|||||++.|.|...+
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~~p   52 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFHVP   52 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            368999999999999999999998643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.68  E-value=1.3e-05  Score=59.37  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++++|++|+|||||++.|+|...+
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~~p   55 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLEEP   55 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCCC
Confidence            358999999999999999999998643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.68  E-value=1.4e-05  Score=59.92  Aligned_cols=26  Identities=42%  Similarity=0.556  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|...
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccC
Confidence            36899999999999999999998754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.4e-05  Score=59.84  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++++|++|+|||||++.|+|...
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            346899999999999999999998754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=1.4e-05  Score=60.85  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||++.|+|.-.
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCCc
Confidence            36899999999999999999999754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.60  E-value=2.1e-05  Score=54.95  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.+.+|+|+|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4557999999999999999999974

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.59  E-value=2.3e-05  Score=58.82  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      .-.++|+|++|+|||||+++|+|...
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcc
Confidence            36899999999999999999999754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=1.3e-05  Score=59.27  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRR   43 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~   43 (230)
                      ..-.++++|++|+|||||++.|+|..
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34689999999999999999999964

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.58  E-value=1.2e-05  Score=59.62  Aligned_cols=27  Identities=22%  Similarity=0.276  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGRRAF   45 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~~~~   45 (230)
                      .-.++++|++|+|||||++.|.|...+
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcCC
Confidence            368999999999999999999997643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.51  E-value=2.1e-05  Score=54.81  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ++|+|+|++||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999953

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.51  E-value=1.9e-05  Score=59.14  Aligned_cols=27  Identities=37%  Similarity=0.337  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRA   44 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~   44 (230)
                      +.-.++|+|++|+|||||++.|+|...
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            346899999999999999999998754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.51  E-value=3.8e-05  Score=54.92  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+|+|++||||||+...|+..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998743

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.47  E-value=3.6e-05  Score=52.55  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|++.|++||||||+++.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578899999999999999863

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.44  E-value=0.00013  Score=54.16  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...|+|.|++|+|||+++++|++.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            367999999999999999999753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.43  E-value=4.5e-05  Score=54.31  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+.+|+|+|++||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999873

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00058  Score=50.91  Aligned_cols=24  Identities=33%  Similarity=0.645  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..++|.|++|+|||+++++|...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            367999999999999999999843

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.41  E-value=3.9e-05  Score=54.63  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ++.+|+|+|++||||||+.+.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999988643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=6.6e-05  Score=53.68  Aligned_cols=27  Identities=15%  Similarity=0.388  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ++..+.|+|+|++||||||+...|+..
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            345689999999999999999999753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00018  Score=53.97  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+++|+|++|+|||+++..|...
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            58899999999999999998744

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=4.2e-05  Score=52.59  Aligned_cols=22  Identities=41%  Similarity=0.711  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.|+|+|++||||||+.+.|..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.7e-05  Score=55.09  Aligned_cols=23  Identities=30%  Similarity=0.658  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.|+|+||+|+||+||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999999854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=5.8e-05  Score=53.87  Aligned_cols=81  Identities=16%  Similarity=0.152  Sum_probs=46.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM   99 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (230)
                      .+++|+|++|+|||+++..|...-.  .+..+.           . ..+..+.-+|...+........+....+...+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~--~~~vp~-----------~-L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e  109 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII--NGEVPE-----------G-LKGRRVLALDMGALVAGAKYRGEFEERLKGVLND  109 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH--HTCSCG-----------G-GTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH--hCCCCH-----------H-HcCceEEEeeHHHHhccCCccHHHHHHHHHHHHH
Confidence            5889999999999999988874322  110000           0 1345666777665544333233444555555544


Q ss_pred             hc-CCccEEEEEEeCC
Q 026970          100 AK-DGIHAVLVVFSVR  114 (230)
Q Consensus       100 ~~-~~~~~il~v~d~~  114 (230)
                      .. ...++|+|+-++.
T Consensus       110 ~~~~~~~iILfIDeih  125 (195)
T d1jbka_         110 LAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHSTTTEEEEEETGG
T ss_pred             HhcCCCcEEEEcchHH
Confidence            32 2235666666554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=7.2e-05  Score=53.17  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..+..|+|-|++|||||||.+.|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999863

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.33  E-value=6e-05  Score=52.31  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.|+|.|++||||||+.+.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999999743

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.33  E-value=4.5e-05  Score=53.10  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ++|+|+|.+||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999988853

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=9.8e-05  Score=51.81  Aligned_cols=25  Identities=36%  Similarity=0.315  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.+..|+++|.+||||||+++.++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457889999999999999998863

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.31  E-value=8.1e-05  Score=51.97  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+..|.|+|.+||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=6.5e-05  Score=52.23  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.|+++|.+|||||||++.|+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=0.00037  Score=51.71  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .-|+|.|++|+|||+++++|...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            56999999999999999999853

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=9.4e-05  Score=51.36  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+..++|+|++||||||+.+.|...
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3477888999999999999998643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=8.6e-05  Score=52.91  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +++|+|+|++||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=6.8e-05  Score=52.56  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.|+|.|++|+|||||+..++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998743

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.23  E-value=0.00011  Score=51.14  Aligned_cols=24  Identities=25%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..|+|.|++||||||+.+.|...
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            367889999999999999999765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.23  E-value=8.9e-05  Score=52.41  Aligned_cols=23  Identities=39%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..|+|+|++||||||+++.|...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            57889999999999999999754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=9.6e-05  Score=53.41  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +..|+|+||+|||||||++.|+..
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            467899999999999999999754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.23  E-value=9.2e-05  Score=52.02  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      +.|+|.|.+||||||+++.|.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999885

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.23  E-value=8.7e-05  Score=52.23  Aligned_cols=21  Identities=33%  Similarity=0.646  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00011  Score=53.27  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ++..|+|.|++|||||||.+.|..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            358899999999999999998853

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00081  Score=50.13  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.-|+|.|++|+|||++++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            357999999999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.19  E-value=8.6e-05  Score=51.45  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      +|+|+|.+||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.16  E-value=0.00016  Score=51.52  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...+|+|+|++||||||+...|+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            3479999999999999999999743

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.16  E-value=0.00013  Score=50.71  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.|+|.|.+||||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57888899999999999998754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00011  Score=52.13  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      -|+|+|++||||+||++.|+..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3889999999999999999754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.13  E-value=0.00012  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      +|+|+|++||||||+.+.|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998743

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.11  E-value=0.00015  Score=51.78  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .++.|+|+|+|||||||+...|...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00032  Score=52.68  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....|+|.|++|+|||+|++++++.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHH
Confidence            3467999999999999999999855

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.08  E-value=0.00015  Score=51.01  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      +|+|+|++||||||+.+.|...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998643

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00018  Score=50.71  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+|+|+|++||||||+...|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999964

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.06  E-value=0.00015  Score=54.31  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+..|+|.|+||+|||||+.+|++.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4467899999999999999999764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00036  Score=55.18  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+++|+|++|||||+++..|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            4679999999999999987764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00018  Score=50.52  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      +|+|+|++||||||..+.|..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999988863

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.00  E-value=0.00015  Score=56.12  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+|++.|++|+|||||+|+|++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999965

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00011  Score=52.06  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .+..|+|+|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356888999999999999999963

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00019  Score=51.05  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026970           22 VVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~   42 (230)
                      |+|+|++|||||||++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.97  E-value=0.0002  Score=49.93  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      ..|+|+|.+||||||+.+.|.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH
Confidence            357789999999999999985

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.003  Score=46.22  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..++|.|++|+||||+++.++.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHH
Confidence            3578899999999999988754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.0003  Score=51.72  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+.++|.|+||+||||+++++++.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999999754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.87  E-value=0.0003  Score=49.41  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.|+|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4577889999999999999963

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.0016  Score=44.55  Aligned_cols=59  Identities=22%  Similarity=0.213  Sum_probs=36.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   80 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (230)
                      +...|+|-|+-|||||||++.++..-........++.+....+.    ..+..+.=+|.=-+.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~~Y~----~~~~~i~H~DlYRl~   90 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYN----IAGKMIYHFDLYRLA   90 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEE----ETTEEEEEEECTTCS
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEEeec----cCCceEEEEEEeccC
Confidence            34678999999999999999997554332223333333332221    245677778854443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.00047  Score=51.91  Aligned_cols=55  Identities=13%  Similarity=0.137  Sum_probs=39.2

Q ss_pred             HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHH
Q 026970           97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDY  160 (230)
Q Consensus        97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~  160 (230)
                      +......+|+||+|+|+..+++..+..+.+.++       .+|.++|+||+|+.+  ....+++
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~-------~Kp~IlVlNK~DLv~--~~~~~~w   63 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPMIEDILK-------NKPRIMLLNKADKAD--AAVTQQW   63 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS-------SSCEEEEEECGGGSC--HHHHHHH
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc-------CCCeEEEEECccCCc--hHHHHHH
Confidence            344556779999999998788877655544432       248999999999987  4444443

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.78  E-value=0.0004  Score=49.34  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+..|+|-|..||||||+++.|...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998743

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.77  E-value=0.00048  Score=48.78  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      .+..|+|.|.+||||||+.+.|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999885

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.77  E-value=0.019  Score=42.43  Aligned_cols=20  Identities=40%  Similarity=0.672  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l   39 (230)
                      ++|++.|.-|+||||+.-.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHH
Confidence            57899999999999997443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.75  E-value=0.00051  Score=51.04  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .....++|.|++|+|||++++.|+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            34468999999999999999998743

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00057  Score=50.50  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...+.++|.|++|+||||++.+|+..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34468999999999999999999864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.00048  Score=50.50  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.++|.|+||+||||+++.|+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            56899999999999999998754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.00047  Score=52.89  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ++..|+|+||||+|||.|.++|+..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            3467899999999999999999753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.61  E-value=0.00074  Score=48.65  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      .++..|.|.|.|||||||+.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999863

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.60  E-value=0.0007  Score=49.39  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.++|.|++|+||||+++.|+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            56899999999999999998754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00084  Score=51.30  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ...+..|+|.|.+|||||||.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            4556899999999999999988874

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0038  Score=44.69  Aligned_cols=22  Identities=14%  Similarity=0.191  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      .-+++.|++|+||||++..++.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999987654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00088  Score=48.30  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.|++.|++||||||+...|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58899999999999999998643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.00019  Score=51.09  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~   40 (230)
                      ..+|+|++|+||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            44678999999999999984

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.27  E-value=0.00062  Score=51.40  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=17.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      +.+.|++.|.+||||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            34689999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.0013  Score=48.35  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=20.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+.++|.|++|+||||++..++.
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            335689999999999999988864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.23  E-value=0.0011  Score=53.22  Aligned_cols=23  Identities=22%  Similarity=0.550  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.+|+++||||+|||-|.++|.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0014  Score=47.74  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.++|.|++|+||||+++.++..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999998754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0022  Score=48.35  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             CCCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           16 SNGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        16 ~~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ...+..|+|.|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456899999999999999987764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.17  E-value=0.013  Score=42.22  Aligned_cols=65  Identities=14%  Similarity=-0.019  Sum_probs=35.6

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCC
Q 026970           69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGG  147 (230)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~  147 (230)
                      ..+.++|+|+...             .........+|.+++++..+ ..+... ...++.+.+. +   .+..-+|+|+.
T Consensus       112 ~d~IiiD~~~~~~-------------~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-~---~~~~giv~N~~  173 (237)
T d1g3qa_         112 FDFILIDCPAGLQ-------------LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-G---LAILGFVLNRY  173 (237)
T ss_dssp             CSEEEEECCSSSS-------------HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-T---CEEEEEEEEEE
T ss_pred             CCEEEEccccccc-------------ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh-h---hhhhhhhhccc
Confidence            3689999987543             11112334578999998775 221111 3333333331 2   12344889998


Q ss_pred             CCCC
Q 026970          148 DELE  151 (230)
Q Consensus       148 D~~~  151 (230)
                      +...
T Consensus       174 ~~~~  177 (237)
T d1g3qa_         174 GRSD  177 (237)
T ss_dssp             TSCT
T ss_pred             cccc
Confidence            8654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.13  E-value=0.0018  Score=46.72  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+|++-|++||||||....|...
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57888899999999999998643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0016  Score=47.11  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.++|.|++|+||||+++.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            45899999999999999988643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.07  E-value=0.0018  Score=47.95  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|++|+|||||++.++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            5788999999999999998863

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.07  E-value=0.0019  Score=46.17  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0019  Score=46.33  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      ..|+|.|.+||||||+.+.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            478999999999999999885

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0029  Score=48.44  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             CCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           15 PSNGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        15 ~~~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..+...++++|++|+|||.|.++|..
T Consensus        48 ~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          48 EHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchhHHHHHHHHh
Confidence            333445799999999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.00096  Score=50.71  Aligned_cols=19  Identities=37%  Similarity=0.595  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 026970           21 TVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l   39 (230)
                      .-+|+|++|+||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            4478899999999999888

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.04  E-value=0.00099  Score=49.70  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026970           22 VVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~   42 (230)
                      +++.|++|+|||++++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            445599999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.002  Score=46.61  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.++|.|++|+||||++..|+..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35889999999999999999754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.029  Score=40.74  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l   39 (230)
                      ..++|.|++.+||||+++++
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHH
Confidence            56888999999999999886

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.83  E-value=0.0027  Score=49.64  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +..+++++||||||||-+.++|+.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            346899999999999999999863

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.79  E-value=0.0023  Score=50.77  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      --|++.|++|+||||++.+++..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            57899999999999999998764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0022  Score=50.71  Aligned_cols=19  Identities=32%  Similarity=0.552  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 026970           22 VVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~   40 (230)
                      -+|+|++|+||||++.+|.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4688999999999999983

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.62  E-value=0.0038  Score=48.74  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +....+++.||+|+|||+|.++|++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            34468999999999999999998654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.59  E-value=0.013  Score=42.19  Aligned_cols=20  Identities=30%  Similarity=0.685  Sum_probs=16.0

Q ss_pred             eEEEEE-cCCCCcHHHHHHHH
Q 026970           20 RTVVLV-GRTGNGKSATGNSI   39 (230)
Q Consensus        20 ~~i~li-G~~g~GKStlin~l   39 (230)
                      +.|++. |..|+||||+.-.|
T Consensus         2 kvIav~s~KGGvGKTtia~nl   22 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANL   22 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHH
Confidence            467777 78999999997554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0046  Score=45.06  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ++.|+|=|.-||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            46889999999999999999963

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.52  E-value=0.0036  Score=44.51  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 026970           21 TVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~   41 (230)
                      .|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488899999999999998863

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0029  Score=46.06  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 026970           20 RTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~~   42 (230)
                      +.|+|-|..||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0058  Score=43.60  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      +-|++-|..||||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5688889999999999998863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.27  E-value=0.0057  Score=42.52  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..-|++.|++|+||||+.-.|...
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            356899999999999999888754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.25  E-value=0.067  Score=38.44  Aligned_cols=20  Identities=25%  Similarity=0.232  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 026970           21 TVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~   40 (230)
                      .++|.|++.+||||+++++.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            57899999999999998863

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.24  E-value=0.0056  Score=42.52  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..-|++.|++|+||||+.-.|...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            367899999999999999887643

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.21  E-value=0.006  Score=44.43  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999854

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0073  Score=42.76  Aligned_cols=24  Identities=13%  Similarity=0.170  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....+.|.|++|+|||+|...++.
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            346889999999999999988764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0072  Score=43.26  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=19.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +.-|+|-|..||||||+++.|..
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH
Confidence            35688889999999999988753

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.85  E-value=0.01  Score=45.30  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      -.++++|++|+|||.+.+.|..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHH
Confidence            4678889999999999988763

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.0078  Score=43.55  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....+.|.|++|+|||+|+..++..
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3468899999999999999888644

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.53  E-value=0.014  Score=40.15  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..-|++.|++|+||||+.-.|...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            367899999999999998776643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.013  Score=41.95  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      .++-|++-|.-||||||+++.|.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHH
Confidence            34678999999999999999885

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.43  E-value=0.012  Score=42.84  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ....++|.|++|+|||+|.-.++
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH
Confidence            34688999999999999987665

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.0092  Score=47.37  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      ...++++|.||+|||++++.++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            4679999999999999998776

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.39  E-value=0.016  Score=43.19  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ....|+|.|..|+|||||+..+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3478899999999999999988643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.34  E-value=0.0056  Score=47.05  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 026970           20 RTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..|+++|++|+|||++++++.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4699999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.25  E-value=0.012  Score=41.61  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ++...+++.|++++|||+|+++|+..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHH
Confidence            44578999999999999999988644

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.00  E-value=0.013  Score=44.77  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 026970           21 TVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        21 ~i~liG~~g~GKStlin~l~~~   42 (230)
                      .+++.|+||+|||.+.++|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            3455799999999999999865

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.99  E-value=0.02  Score=42.53  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             CCCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           14 SPSNGERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        14 ~~~~~~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ...+....+.+.|++++|||+|+++|...
T Consensus        99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_          99 KKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            34455678899999999999999998643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.86  E-value=0.017  Score=41.72  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....++|.|++|+|||+|.-.++.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            345789999999999999877653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.74  E-value=0.018  Score=41.17  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026970           22 VVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~   42 (230)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.73  E-value=0.02  Score=36.86  Aligned_cols=24  Identities=13%  Similarity=0.105  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      .+.+.|++-|-+|+||||+.++|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            456899999999999999999996

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.026  Score=40.91  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      +....++|.|++|+|||+|.-.++.
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446889999999999999877763

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.69  E-value=0.02  Score=41.26  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....++|.|++|+|||+|.-.++.
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            346889999999999999877753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.61  E-value=0.018  Score=44.10  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+|.|=|.-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            36899999999999999999964

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.56  E-value=0.024  Score=43.46  Aligned_cols=24  Identities=33%  Similarity=0.374  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+|.|=|.-|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            478999999999999999999764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.56  E-value=0.024  Score=41.95  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=18.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      .-.++|.|+||+|||+|+..++
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3567899999999999976654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.54  E-value=0.016  Score=44.45  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970           19 ERTVVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~~~   42 (230)
                      ..+|.|=|.-|+||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999743

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.31  E-value=0.024  Score=40.55  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=18.7

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ....+.|.|++|+|||+|.-.++
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHH
Confidence            44688999999999999975543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.16  E-value=0.23  Score=34.69  Aligned_cols=24  Identities=4%  Similarity=-0.011  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....+++-|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988874

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.89  E-value=0.035  Score=36.31  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=17.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHh
Q 026970           19 ERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l~   40 (230)
                      ..+.+|.+++|+|||+++-.++
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHH
Confidence            3567888999999999875543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.041  Score=40.49  Aligned_cols=21  Identities=29%  Similarity=0.287  Sum_probs=17.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      ...+|.|++|+|||+|+-.|+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            467789999999999986654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.12  E-value=0.027  Score=42.11  Aligned_cols=16  Identities=19%  Similarity=0.403  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHH
Q 026970           21 TVVLVGRTGNGKSATG   36 (230)
Q Consensus        21 ~i~liG~~g~GKStli   36 (230)
                      .++|+|.+|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4678899999999875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.056  Score=40.36  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           17 NGERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ..+-+++++|.+|+|||+|+..+..
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            4557999999999999999988764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.02  E-value=0.034  Score=41.89  Aligned_cols=16  Identities=19%  Similarity=0.459  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCcHHHHH
Q 026970           21 TVVLVGRTGNGKSATG   36 (230)
Q Consensus        21 ~i~liG~~g~GKStli   36 (230)
                      .++|.|.+|+||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4788899999999875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.061  Score=41.58  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=17.2

Q ss_pred             CeEEEEEcCCCCcHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l   39 (230)
                      ....+|.|++|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            467888999999999987543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.064  Score=39.76  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=17.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHH
Q 026970           18 GERTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l   39 (230)
                      .++.|++.|.-|+||||+.-.|
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHH
Confidence            3468888999999999976554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.03  E-value=0.29  Score=35.05  Aligned_cols=45  Identities=22%  Similarity=0.135  Sum_probs=26.4

Q ss_pred             CccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          103 GIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       103 ~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++|.+++|+++.+ .+......  +.|.-...  ...+.+||+||+|+..
T Consensus        10 NiD~~~iV~s~~~P~~~~~~id--R~Lv~a~~--~~i~pvIvlnK~DL~~   55 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFSTALLD--RFLVLVEA--NDIQPIICITKMDLIE   55 (231)
T ss_dssp             CCCEEEEEEESTTTTCCHHHHH--HHHHHHHT--TTCEEEEEEECGGGCC
T ss_pred             ccCEEEEEEECCCCCCCHHHHH--HHHHHHHH--cCCCEEEEEecccccc
Confidence            5688899988753 34432211  22222111  1236889999999986

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.88  E-value=0.23  Score=35.51  Aligned_cols=44  Identities=16%  Similarity=0.054  Sum_probs=26.7

Q ss_pred             CccEEEEEEeCCC-CCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970          103 GIHAVLVVFSVRS-RFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE  151 (230)
Q Consensus       103 ~~~~il~v~d~~~-~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (230)
                      ++|.+++|+.+.+ .+..... .++-.... .    ..+.++|+||+|+..
T Consensus        10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a~~-~----~i~pvIvlnK~DL~~   55 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTYIIDKFLVLAEK-N----ELETVMVINKMDLYD   55 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHHHHHHHHHHHHH-T----TCEEEEEECCGGGCC
T ss_pred             cCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-c----CCCEEEEEeCcccCC
Confidence            5688999998763 3443321 12211111 1    247899999999986

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.12  E-value=0.086  Score=38.40  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 026970           20 RTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l~   40 (230)
                      ..|+|.|++|+||+.+.+.|-
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHH
Confidence            457899999999999999985

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.12  Score=36.14  Aligned_cols=20  Identities=20%  Similarity=0.396  Sum_probs=17.1

Q ss_pred             eEEEEEcC-CCCcHHHHHHHH
Q 026970           20 RTVVLVGR-TGNGKSATGNSI   39 (230)
Q Consensus        20 ~~i~liG~-~g~GKStlin~l   39 (230)
                      +++.+.|. +||||||+.-.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            68999998 599999997665

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.84  E-value=0.17  Score=37.05  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=16.3

Q ss_pred             CeEEEEEcCCCCcHHHHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        19 ~~~i~liG~~g~GKStlin~l   39 (230)
                      ...|++-|+-|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            356666699999999986554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.30  E-value=0.22  Score=36.77  Aligned_cols=23  Identities=22%  Similarity=0.305  Sum_probs=19.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ..-+++++|.+|+|||+|+-.++
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHH
Confidence            45689999999999999987765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=86.67  E-value=0.21  Score=36.65  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=18.8

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHh
Q 026970           18 GERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ....+.|.|++|+|||||.=.++
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHH
Confidence            34688999999999999975554

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=85.96  E-value=0.16  Score=33.94  Aligned_cols=17  Identities=47%  Similarity=0.753  Sum_probs=14.5

Q ss_pred             CeEEEEEcCCCC-cHHHH
Q 026970           19 ERTVVLVGRTGN-GKSAT   35 (230)
Q Consensus        19 ~~~i~liG~~g~-GKStl   35 (230)
                      +++|+++|.||+ |++||
T Consensus         2 pK~I~IlGsTGSIG~~tL   19 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTL   19 (150)
T ss_dssp             CEEEEEETTTSHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHH
Confidence            589999999997 77775

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.84  E-value=0.27  Score=36.27  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=16.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 026970           20 RTVVLVGRTGNGKSATGNSI   39 (230)
Q Consensus        20 ~~i~liG~~g~GKStlin~l   39 (230)
                      ++|++-|.-|+||||+.-.|
T Consensus         3 r~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57888999999999986444

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.46  E-value=0.2  Score=37.53  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=14.5

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 026970           20 RTVVLVGRTGNGKSATG   36 (230)
Q Consensus        20 ~~i~liG~~g~GKStli   36 (230)
                      -.-+++|-+|+|||||-
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            35689999999999975

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.34  E-value=0.15  Score=32.74  Aligned_cols=18  Identities=33%  Similarity=0.217  Sum_probs=14.3

Q ss_pred             CeEEEEEcCCCCcHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATG   36 (230)
Q Consensus        19 ~~~i~liG~~g~GKStli   36 (230)
                      ..+++|.++||+|||..+
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            367788899999999443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.27  E-value=0.3  Score=33.65  Aligned_cols=16  Identities=31%  Similarity=0.403  Sum_probs=13.1

Q ss_pred             EEEEEcCCCCcHHHHH
Q 026970           21 TVVLVGRTGNGKSATG   36 (230)
Q Consensus        21 ~i~liG~~g~GKStli   36 (230)
                      ++++.++||+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            4678899999999743

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.05  E-value=0.22  Score=37.52  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=14.6

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 026970           20 RTVVLVGRTGNGKSATG   36 (230)
Q Consensus        20 ~~i~liG~~g~GKStli   36 (230)
                      -.-+++|-+|+|||||-
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            45689999999999974

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=82.99  E-value=0.37  Score=31.52  Aligned_cols=17  Identities=24%  Similarity=0.262  Sum_probs=13.6

Q ss_pred             EEEcCCCCcHHH-HHHHH
Q 026970           23 VLVGRTGNGKSA-TGNSI   39 (230)
Q Consensus        23 ~liG~~g~GKSt-lin~l   39 (230)
                      +++|+-.||||| |++.+
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            678999999999 55554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.90  E-value=0.39  Score=35.58  Aligned_cols=24  Identities=13%  Similarity=0.328  Sum_probs=19.6

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      ...-+++++|.+|+|||+|+-.++
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHH
Confidence            345689999999999999976554

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.53  E-value=0.56  Score=32.13  Aligned_cols=21  Identities=24%  Similarity=0.608  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 026970           22 VVLVGRTGNGKSATGNSILGR   42 (230)
Q Consensus        22 i~liG~~g~GKStlin~l~~~   42 (230)
                      |+++|...+|||.+...++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999988754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.43  E-value=0.47  Score=34.78  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970           18 GERTVVLVGRTGNGKSATGNSILG   41 (230)
Q Consensus        18 ~~~~i~liG~~g~GKStlin~l~~   41 (230)
                      ....+.+.|++++|||+|.-.++.
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHH
Confidence            345788999999999999877653

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.32  E-value=0.18  Score=35.09  Aligned_cols=18  Identities=22%  Similarity=0.329  Sum_probs=14.9

Q ss_pred             CeEEEEEcCCCCcHHHHH
Q 026970           19 ERTVVLVGRTGNGKSATG   36 (230)
Q Consensus        19 ~~~i~liG~~g~GKStli   36 (230)
                      ...+++.++||+|||+..
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            357889999999999763

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.20  E-value=0.46  Score=35.67  Aligned_cols=17  Identities=29%  Similarity=0.573  Sum_probs=14.6

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 026970           20 RTVVLVGRTGNGKSATG   36 (230)
Q Consensus        20 ~~i~liG~~g~GKStli   36 (230)
                      -.-+++|-+|+|||||-
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            35579999999999986

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.06  E-value=0.61  Score=34.16  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=19.2

Q ss_pred             CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970           17 NGERTVVLVGRTGNGKSATGNSIL   40 (230)
Q Consensus        17 ~~~~~i~liG~~g~GKStlin~l~   40 (230)
                      +....+.+.|++|+|||+|.-.++
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHH
Confidence            345688899999999999975554