Citrus Sinensis ID: 027011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQELRYGIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLAAS
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHccccccccccHHccccccccccccccccHHHHcccccccccccHHHHcccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccHHHHHcHHHHHHHHHccccccHHHHHHHHHHccccHcccccccccHcHHcccccccccccccHEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
magvslkcgdcGALLRSVQEAQEHaeltshsnfseSTEAVLNLVCAtcgkpcrsktetdlhrkrtghtdfvdktseaakpislevpkatadseeaidvdmsgsqpeemvepEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEhendpdidempmvpvsggggaskssltPEEIKLKAQELRYGIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLAAS
Flexible Loop (DISEMBL)
magvslkcgdCGALLRSVQEAQEHAELtshsnfsesTEAVLNLVCATCGKpcrsktetdlhrkrtghtdfvdktseaakpislevpkatadseeaIDVDmsgsqpeemvEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQELRYGIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLAAS
Low Complexity Region (SEG)
MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGnanveaavnwvvehenDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQELRYGIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLAAS
Disordered region (IsUnstruct)
*******CGDCGALL**********************EAVLNLVCATCGKPC********************************************************************LEAMGFPVARATRALHYSGNANVEAAVNWVVEH*******************************LKAQELRYGIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLA**
Disordered Region (DISOPRED)
***VSLKCGDCGALLRSVQ************NFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKATA************************KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDI*********************************GIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLAAS
Disordered Region (DISEMBL)
MAGVSLKCGDCGALLRSVQEA**************STEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDV***************DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG*********TPEEIKLKAQELRYGIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLAAS
Disordered Region (DISPRO)
*AGVSLKCGDCGALLRSVQEAQEHA******NFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKA*******************MVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV********SSLTPEEIKLKAQELRYGIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLAAS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQELRYGIFYAVYFFSDGYCNCYMLSYITNAFLDTIFWFLAAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q6NXA9	294	UBX domain-containing pro	yes	no	0.283	0.221	0.485	6e-10
Q499N6	297	UBX domain-containing pro	yes	no	0.222	0.171	0.509	4e-09
Q922Y1	297	UBX domain-containing pro	yes	no	0.222	0.171	0.509	5e-09
P56399	858	Ubiquitin carboxyl-termin	no	no	0.305	0.081	0.371	5e-09
P45974	858	Ubiquitin carboxyl-termin	yes	no	0.305	0.081	0.371	5e-09
Q5R407	858	Ubiquitin carboxyl-termin	yes	no	0.305	0.081	0.371	5e-09
Q04323	297	UBX domain-containing pro	no	no	0.218	0.168	0.5	8e-09
Q11119	775	Ubiquitin carboxyl-termin	yes	no	0.165	0.049	0.438	1e-08
Q32KW2	297	UBX domain-containing pro	yes	no	0.192	0.148	0.545	1e-08
Q5BKP2	858	Ubiquitin carboxyl-termin	no	no	0.336	0.089	0.345	5e-08

>sp|Q6NXA9|UBXN1_DANRE UBX domain-containing protein 1 OS=Danio rerio GN=ubxn1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG--GGASK 175
           L  L  MGF   RA +A+ ++GN  +E A++W++EHENDPDIDE P VP +G   G A +
Sbjct: 7   LDSLLEMGFGRNRAEKAVAHTGNQGIERAMDWLMEHENDPDIDE-PYVPPAGNTLGPAEE 65

Query: 176 SSLTPEEI 183
            S +P EI
Sbjct: 66  QSQSPTEI 73

Ubiquitin-binding protein that specifically binds 'Lys-6'-linked polyubiquitin chains. Component of a complex required to couple deglycosylation and proteasome-mediated degradation of misfolded proteins in the endoplasmic reticulun that are retrotranslocated in the cytosol. Involved in ubiquitin-proteasome systems.
Danio rerio (taxid: 7955)

>sp|Q499N6|UBXN1_RAT UBX domain-containing protein 1 OS=Rattus norvegicus GN=Ubxn1 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 37/51 (72%)

Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168
           L+ L  MGFP  RA +AL  +GN  +EAA++W++EHE+DPD+DE    P+S
Sbjct: 7   LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLS 57

Ubiquitin-binding protein that interacts with the BRCA1-BARD1 heterodimer, and regulates its activity. Specifically binds 'Lys-6'-linked polyubiquitin chains. Interaction with autoubiquitinated BRCA1, leads to inhibit the E3 ubiquitin-protein ligase activity of the BRCA1-BARD1 heterodimer. Component of a complex required to couple deglycosylation and proteasome-mediated degradation of misfolded proteins in the endoplasmic reticulun that are retrotranslocated in the cytosol.

Rattus norvegicus (taxid: 10116)

>sp|Q922Y1|UBXN1_MOUSE UBX domain-containing protein 1 OS=Mus musculus GN=Ubxn1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 37/51 (72%)

Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168
           L+ L  MGFP  RA +AL  +GN  +EAA++W++EHE+DPD+DE    P+S
Sbjct: 7   LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLS 57

Ubiquitin-binding protein that interacts with the BRCA1-BARD1 heterodimer, and regulates its activity. Specifically binds 'Lys-6'-linked polyubiquitin chains. Interaction with autoubiquitinated BRCA1, leads to inhibit the E3 ubiquitin-protein ligase activity of the BRCA1-BARD1 heterodimer (By similarity) Component of a complex required to couple deglycosylation and proteasome-mediated degradation of misfolded proteins in the endoplasmic reticulun that are retrotranslocated in the cytosol. Involved in ubiquitin-proteasome systems.

Mus musculus (taxid: 10090)

>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 46/70 (65%)

Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
           P +D+ ++ +L  MGFP+    +A++Y+GN+  EAA+NWV+ H +DPD     ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712

Query: 171 GGASKSSLTP 180
            G++ ++  P
Sbjct: 713 PGSTSAAADP 722

Cleaves linear and branched multiubiquitin polymers with a marked preference for branched polymers. Involved in unanchored 'Lys-48'-linked polyubiquitin disassembly. Binds linear and 'Lys-63'-linked polyubiquitin with a lower affinity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 46/70 (65%)

Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
           P +D+ ++ +L  MGFP+    +A++Y+GN+  EAA+NWV+ H +DPD     ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712

Query: 171 GGASKSSLTP 180
            G++ ++  P
Sbjct: 713 PGSTSAAADP 722

Cleaves linear and branched multiubiquitin polymers with a marked preference for branched polymers. Involved in unanchored 'Lys-48'-linked polyubiquitin disassembly. Binds linear and 'Lys-63'-linked polyubiquitin with a lower affinity. Knock-down of USP5 causes the accumulation of p53/TP53 and an increase in p53/TP53 transcriptional activity because the unanchored polyubiquitin that accumulates is able to compete with ubiquitinated p53/TP53 but not with MDM2 for proteasomal recognition.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 46/70 (65%)

Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
           P +D+ ++ +L  MGFP+    +A++Y+GN+  EAA+NWV+ H +DPD     ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712

Query: 171 GGASKSSLTP 180
            G++ ++  P
Sbjct: 713 PGSTSAAADP 722

Cleaves linear and branched multiubiquitin polymers with a marked preference for branched polymers. Involved in unanchored 'Lys-48'-linked polyubiquitin disassembly. Binds linear and 'Lys-63'-linked polyubiquitin with a lower affinity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q04323|UBXN1_HUMAN UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167
           L+ L  MGFP  RA +AL  +GN  +EAA++W++EHE+DPD+DE    P+
Sbjct: 7   LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPL 56

Ubiquitin-binding protein that interacts with the BRCA1-BARD1 heterodimer, and regulates its activity. Specifically binds 'Lys-6'-linked polyubiquitin chains. Interaction with autoubiquitinated BRCA1, leads to inhibit the E3 ubiquitin-protein ligase activity of the BRCA1-BARD1 heterodimer. Component of a complex required to couple deglycosylation and proteasome-mediated degradation of misfolded proteins in the endoplasmic reticulun that are retrotranslocated in the cytosol.

Homo sapiens (taxid: 9606)

>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 40/57 (70%)

Query: 105 PEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
           PE+    E ++  +++L+AMGFP+ R  RAL  +GN++ E A+NW+ EH  DP+ID+
Sbjct: 569 PEKTETIEWNQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEIDK 625

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q32KW2|UBXN1_BOVIN UBX domain-containing protein 1 OS=Bos taurus GN=UBXN1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
           L+ L  MGFP  RA +AL  +GN  +EAA++W++EHE+DPD+DE
Sbjct: 7   LESLIEMGFPKGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDE 50

Ubiquitin-binding protein that interacts with the BRCA1-BARD1 heterodimer, and regulates its activity. Specifically binds 'Lys-6'-linked polyubiquitin chains. Interaction with autoubiquitinated BRCA1, leads to inhibit the E3 ubiquitin-protein ligase activity of the BRCA1-BARD1 heterodimer. Component of a complex required to couple deglycosylation and proteasome-mediated degradation of misfolded proteins in the endoplasmic reticulun that are retrotranslocated in the cytosol.

Bos taurus (taxid: 9913)

>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 107 EMVEP-EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165
           ++++P ++D+  + +L  MGFP+    +A++++GN   E A NW++ H  +PD  E   +
Sbjct: 644 QLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAI 703

Query: 166 PVSGGGGASKSSLT------PEEI 183
           P  GG GAS    T      PEEI
Sbjct: 704 PGYGGAGASVFGATGLDNQPPEEI 727

Deubiquitinase that mediates deubiquitination of target proteins such as BECN1, MITF, SKP2 and USP10 and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). Component of a regulatory loop that controls autophagy and p53/TP53 levels: mediates deubiquitination of BECN1, a key regulator of autophagy, leading to stabilize the PIK3C3/VPS34-containing complexes. Also deubiquitinates USP10, an essential regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-containing complexes regulate USP13 stability, suggesting the existence of a regulatory system by which PIK3C3/VPS34-containing complexes regulate p53/TP53 protein levels via USP10 and USP13. Recruited by nuclear UFD1 and mediates deubiquitination of SKP2, thereby regulating endoplasmic reticulum-associated degradation (ERAD). Mediates stabilization of SIAH2 independently of deubiquitinase activity: binds ubiquitinated SIAH2 and acts by impairing SIAH2 autoubiquitination. Has a weak deubiquitinase activity in vitro and preferentially cleaves 'Lys-63'-linked polyubiquitin chains. In contrast to USP5, it is not able to mediate unanchored polyubiquitin disassembly. Able to cleave ISG15 in vitro; however, additional experiments are required to confirm such data.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
225433606	413	PREDICTED: uncharacterized protein LOC10	0.834	0.462	0.801	5e-86
224140845	414	predicted protein [Populus trichocarpa]	0.834	0.461	0.796	2e-83
427199320	411	ubiquitin-associated/TS-N domain-contain	0.820	0.457	0.805	5e-82
224060373	415	predicted protein [Populus trichocarpa]	0.807	0.445	0.766	3e-81
297848730	413	ubiquitin-associated /TS-N domain-contai	0.812	0.450	0.739	5e-76
356525231	415	PREDICTED: UBX domain-containing protein	0.825	0.455	0.75	6e-76
255634573	253	unknown [Glycine max]	0.825	0.747	0.744	1e-75
18390444	413	ubiquitin-associated (UBA)/TS-N domain-c	0.812	0.450	0.739	3e-75
356512473	415	PREDICTED: UBX domain-containing protein	0.825	0.455	0.744	5e-75
449442391	411	PREDICTED: uncharacterized protein LOC10	0.820	0.457	0.721	1e-73

>gi|225433606|ref|XP_002273725.1| PREDICTED: uncharacterized protein LOC100248761 [Vitis vinifera] gi|298205155|emb|CBI17214.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 153/191 (80%), Positives = 171/191 (89%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAGVSLKCGDCGALL+SV+EAQEHAELTSHSNFSESTEAVLNL+C  C KPCRSKTE+DL
Sbjct: 1   MAGVSLKCGDCGALLKSVEEAQEHAELTSHSNFSESTEAVLNLICTICSKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKE 120
           H KRTGHT+FVDKTSEAAKPISLEVPKAT +S+E +D   S SQP+EM+ PEVDK+LL+E
Sbjct: 61  HTKRTGHTEFVDKTSEAAKPISLEVPKATDESQEVVDASGSSSQPQEMIAPEVDKKLLEE 120

Query: 121 LEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTP 180
           LEAMGFP ARATRALHYSGN ++EAAVNWVVEHEND DIDEMP+VPV+    A K SLTP
Sbjct: 121 LEAMGFPTARATRALHYSGNTSLEAAVNWVVEHENDSDIDEMPLVPVNTKVEAPKPSLTP 180

Query: 181 EEIKLKAQELR 191
           EE+K+KAQELR
Sbjct: 181 EEMKIKAQELR 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140845|ref|XP_002323789.1| predicted protein [Populus trichocarpa] gi|222866791|gb|EEF03922.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 153/192 (79%), Positives = 169/192 (88%), Gaps = 1/192 (0%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAG+SLKCGDCGA LRSVQEAQ+HAELTSHSNFSESTEAVLNLVCATC KPCRSKTE+DL
Sbjct: 1   MAGLSLKCGDCGASLRSVQEAQDHAELTSHSNFSESTEAVLNLVCATCDKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPKATA-DSEEAIDVDMSGSQPEEMVEPEVDKELLK 119
           H KRTGH++F DKT+EAA+PISLEVPKAT  D+ E      + +QPEEMV PEVDK++L+
Sbjct: 61  HTKRTGHSEFTDKTAEAAEPISLEVPKATPMDANEPAADASTSTQPEEMVAPEVDKKILE 120

Query: 120 ELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLT 179
           ELEAMGFP ARATRALHYSGNA +EAAVNWVVEHENDPDIDEMPMVPV+    ASK SLT
Sbjct: 121 ELEAMGFPTARATRALHYSGNAGLEAAVNWVVEHENDPDIDEMPMVPVNSNAEASKPSLT 180

Query: 180 PEEIKLKAQELR 191
           PEE+K KAQELR
Sbjct: 181 PEEVKQKAQELR 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199320|gb|AFY26887.1| ubiquitin-associated/TS-N domain-containing protein [Morella rubra]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 153/190 (80%), Positives = 165/190 (86%), Gaps = 2/190 (1%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAGVSLKCGDCGALLRSV+EAQEHAELTSHSNFSESTEAVLNLVC  CGKPCRSKTE+DL
Sbjct: 1   MAGVSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKE 120
           H KRTGHT+FVDKTSEA KPISLEVPKA A+S++A   + S SQ EEMV PEVDK LL+E
Sbjct: 61  HTKRTGHTEFVDKTSEATKPISLEVPKAAAESDQA--ANASTSQSEEMVVPEVDKNLLEE 118

Query: 121 LEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTP 180
           LEAMGF  ARATRALHYSGNA +EAAVNWVVEHEND DID+MPMVPV+    A K SLTP
Sbjct: 119 LEAMGFSTARATRALHYSGNAGIEAAVNWVVEHENDTDIDQMPMVPVNTKAEAPKPSLTP 178

Query: 181 EEIKLKAQEL 190
           EE+K K QEL
Sbjct: 179 EELKAKQQEL 188

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060373|ref|XP_002300167.1| predicted protein [Populus trichocarpa] gi|118482259|gb|ABK93057.1| unknown [Populus trichocarpa] gi|222847425|gb|EEE84972.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 151/197 (76%), Positives = 167/197 (84%), Gaps = 12/197 (6%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAGVSLKCGDCGALL+SVQEAQ+HAELTSHSNFSESTEAVLNLVC TCGKPCRSKTE+DL
Sbjct: 1   MAGVSLKCGDCGALLKSVQEAQDHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDM-------SGSQPEEMVEPEV 113
           H KRTGHT+F DKT+E  KPISLEVPKA      A+D+D+       + SQPEEMV PEV
Sbjct: 61  HTKRTGHTEFADKTAEVTKPISLEVPKAA-----AMDIDVPAAADASTTSQPEEMVAPEV 115

Query: 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGA 173
           DK++L ELEAMGFP ARATRALHYSGNA++EAAVNWVVEHENDPDIDEMPMV ++    A
Sbjct: 116 DKKILDELEAMGFPTARATRALHYSGNASLEAAVNWVVEHENDPDIDEMPMVSINSKVEA 175

Query: 174 SKSSLTPEEIKLKAQEL 190
            K SLTPEE+K KAQEL
Sbjct: 176 PKPSLTPEEMKQKAQEL 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848730|ref|XP_002892246.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338088|gb|EFH68505.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 160/192 (83%), Gaps = 6/192 (3%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAGVSLKCGDCG LL+SV+EAQEHAELTSHSNF+ESTEAVLNLVC TC KPCRSKTE+DL
Sbjct: 1   MAGVSLKCGDCGTLLKSVEEAQEHAELTSHSNFAESTEAVLNLVCTTCSKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGS--QPEEMVEPEVDKELL 118
           H KRTGHT+FVDKT E  KPI+LE PK   +    ID + SGS    EEMV P+VD  +L
Sbjct: 61  HTKRTGHTEFVDKTLETVKPITLEAPKVAME----IDDNASGSGEAAEEMVVPDVDNNIL 116

Query: 119 KELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSL 178
           +ELEAMGFP ARATRALHYSGNA++EAAVNWVVEHENDPD+DEMP VP +   G +K +L
Sbjct: 117 EELEAMGFPKARATRALHYSGNASLEAAVNWVVEHENDPDVDEMPKVPANSNVGPAKPAL 176

Query: 179 TPEEIKLKAQEL 190
           TPEE+KLKAQEL
Sbjct: 177 TPEEVKLKAQEL 188

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525231|ref|XP_003531230.1| PREDICTED: UBX domain-containing protein 1-A-like [Glycine max]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 159/192 (82%), Gaps = 3/192 (1%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAGVSLKCGDCGALLR+V+EAQEHAELTSHSNFSESTE VLNL+C  C KPCRSKTE+DL
Sbjct: 1   MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEPVLNLICTACSKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPK--ATADSEEAIDVDMSGSQPEEMVEPEVDKELL 118
           H KRTGHT+FVDKTSEA KPISLE PK  ATA SE       S  Q EEMV PEVDK+LL
Sbjct: 61  HTKRTGHTEFVDKTSEAVKPISLEAPKVDATASSENP-SAAASTDQNEEMVVPEVDKKLL 119

Query: 119 KELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSL 178
           +ELE+MGF  ARATRALHYSGNA +E+AVNW+VEHENDPDID+MP+VP +    A K SL
Sbjct: 120 EELESMGFSTARATRALHYSGNAGLESAVNWIVEHENDPDIDQMPLVPTNTKIEAPKPSL 179

Query: 179 TPEEIKLKAQEL 190
           TPEE+K K QEL
Sbjct: 180 TPEELKAKQQEL 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634573|gb|ACU17649.1| unknown [Glycine max]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/192 (74%), Positives = 158/192 (82%), Gaps = 3/192 (1%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAGVSLKCGDCGALLR+V+EAQEHAELTSHSNFSESTE VLNL+C  C KPCRSKTE+DL
Sbjct: 1   MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEPVLNLICTACSKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPK--ATADSEEAIDVDMSGSQPEEMVEPEVDKELL 118
           H KRTGHT+FVDKTSEA KPISLE PK  ATA SE       S  Q EEMV PEVDK+LL
Sbjct: 61  HTKRTGHTEFVDKTSEAVKPISLEAPKVDATASSENP-SAAASTDQNEEMVVPEVDKKLL 119

Query: 119 KELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSL 178
           +ELE+MGF  ARATRALHYSGNA +E+AVNW+VEHENDPDID+MP+VP +      K SL
Sbjct: 120 EELESMGFSTARATRALHYSGNAGLESAVNWIVEHENDPDIDQMPLVPTNTKIETPKPSL 179

Query: 179 TPEEIKLKAQEL 190
           TPEE+K K QEL
Sbjct: 180 TPEELKAKQQEL 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390444|ref|NP_563718.1| ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] gi|7211981|gb|AAF40452.1|AC004809_10 ESTs gb|N65605, gb|N38087, gb|T20485, gb|T13726, gb|N38339, gb|F15440 and gb|N97201 come from this gene [Arabidopsis thaliana] gi|17065066|gb|AAL32687.1| Unknown protein [Arabidopsis thaliana] gi|21594053|gb|AAM65971.1| unknown [Arabidopsis thaliana] gi|23197878|gb|AAN15466.1| Unknown protein [Arabidopsis thaliana] gi|332189630|gb|AEE27751.1| ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 159/192 (82%), Gaps = 6/192 (3%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAGVSLKCGDCG LL+SV+EAQEHAELTSHSNF+ESTEAVLNLVC TC KPCRSK E+DL
Sbjct: 1   MAGVSLKCGDCGTLLKSVEEAQEHAELTSHSNFAESTEAVLNLVCTTCTKPCRSKIESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGS--QPEEMVEPEVDKELL 118
           H KRTGHT+FVDKT E  KPISLE PK   +    ID + SGS    EEMV P+VD  +L
Sbjct: 61  HTKRTGHTEFVDKTLETIKPISLEAPKVAME----IDDNASGSGEAAEEMVVPDVDNNIL 116

Query: 119 KELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSL 178
           +ELEAMGFP ARATRALHYSGNA++EAAVNWVVEHENDPD+DEMP VP +   G +K +L
Sbjct: 117 EELEAMGFPKARATRALHYSGNASLEAAVNWVVEHENDPDVDEMPKVPSNSNVGPAKPAL 176

Query: 179 TPEEIKLKAQEL 190
           TPEE+KLKAQEL
Sbjct: 177 TPEEVKLKAQEL 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512473|ref|XP_003524943.1| PREDICTED: UBX domain-containing protein 1-A-like [Glycine max]

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 143/192 (74%), Positives = 159/192 (82%), Gaps = 3/192 (1%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAGVSLKCGDCGALLR+V+EAQEHAELTSHSNFSESTE VLNL+C+ C KPCRSKTE+DL
Sbjct: 1   MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEPVLNLICSVCSKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPK--ATADSEEAIDVDMSGSQPEEMVEPEVDKELL 118
           H KRTGHT+FVDKTSEA KPISLE PK  ATA SE       S  + EEMV PEVDK+LL
Sbjct: 61  HTKRTGHTEFVDKTSEAVKPISLEAPKVDATASSENP-SAAASTDKNEEMVVPEVDKKLL 119

Query: 119 KELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSL 178
           KELE+MGF  ARATRALHYSGNA +E+AVNW+VEHENDPDID+MP+VP +    A K  L
Sbjct: 120 KELESMGFSTARATRALHYSGNAGLESAVNWIVEHENDPDIDQMPLVPANTKIEAPKPLL 179

Query: 179 TPEEIKLKAQEL 190
           TPEE+K K QEL
Sbjct: 180 TPEEMKAKQQEL 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442391|ref|XP_004138965.1| PREDICTED: uncharacterized protein LOC101215434 [Cucumis sativus] gi|449505284|ref|XP_004162425.1| PREDICTED: uncharacterized LOC101215434 [Cucumis sativus]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 160/190 (84%), Gaps = 2/190 (1%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
           MAG+SL+CGDCG LL+SV+EAQ+HAELTSHSNFSESTEAVLNLVC  CGKPCRSKTE+DL
Sbjct: 1   MAGLSLQCGDCGVLLKSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDL 60

Query: 61  HRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKE 120
           H KRTGHT+F DKT EAAKPISLE PK  A++E+  D   S S+ EEMV PEV+K +L+E
Sbjct: 61  HTKRTGHTEFADKTLEAAKPISLEAPKVDAEAEDGGDA--SASKSEEMVVPEVNKNILEE 118

Query: 121 LEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTP 180
           LEAMGFP A+ATRAL YSGN+++EAAVNWVVEHENDP+ID+MP+VP      A K SLTP
Sbjct: 119 LEAMGFPTAQATRALFYSGNSSLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTP 178

Query: 181 EEIKLKAQEL 190
           E++K K QEL
Sbjct: 179 EQLKAKQQEL 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2010637	413	AT1G04850 [Arabidopsis thalian	0.825	0.457	0.659	6.9e-63
UNIPROTKB|G4MXB0	787	MGG_08270 "Ubiquitin carboxyl-	0.650	0.189	0.282	1.9e-05

TAIR|locus:2010637 AT1G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 126/191 (65%), Positives = 143/191 (74%)

Query:     1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDL 60
             MAGVSLKCGDCG LL+SV+EAQEHAELTSHSNF+ESTEAVLNLVC TC KPCRSK E+DL
Sbjct:     1 MAGVSLKCGDCGTLLKSVEEAQEHAELTSHSNFAESTEAVLNLVCTTCTKPCRSKIESDL 60

Query:    61 HRKRTGHTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKE 120
             H KRTGHT+FVDKT E  KPISLE PK   + ++  +   SG   EEMV P+VD  +L+E
Sbjct:    61 HTKRTGHTEFVDKTLETIKPISLEAPKVAMEIDD--NASGSGEAAEEMVVPDVDNNILEE 118

Query:   121 LEAMGFPVARATRALHYSGXXXXXXXXXXXXXXXXDPDIDEMPMVPVSGGGGASKSSLTP 180
             LEAMGFP ARATRALHYSG                DPD+DEMP VP +   G +K +LTP
Sbjct:   119 LEAMGFPKARATRALHYSGNASLEAAVNWVVEHENDPDVDEMPKVPSNSNVGPAKPALTP 178

Query:   181 EEIKLKAQELR 191
             EE+KLKAQELR
Sbjct:   179 EEVKLKAQELR 189

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

UNIPROTKB|G4MXB0 MGG_08270 "Ubiquitin carboxyl-terminal hydrolase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 127 (49.8 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 46/163 (28%), Positives = 68/163 (41%)

Query:    36 STEAVLNLVCATCG-KPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKATADSEE 94
             + E ++ L C++CG K   +K        +    +    T     PI ++VP    D   
Sbjct:   499 TAEEIVELTCSSCGSKAGYTKRSCFKTLPQVLVVNARKMTIVNWVPIKVDVPVLVNDDPY 558

Query:    95 AIDVDMS-GSQPEEMVEPE-----------VDKELLKELEAMGFPVARATRALHYSGXXX 142
              +D  +S G QP E + PE            + E + +LEAMGFP  R  +ALH +G   
Sbjct:   559 LLDNYLSQGQQPGEELLPEDASSSSAPAFTPNPEAVAQLEAMGFPRNRCEKALHATGNSD 618

Query:   143 XXXXXXXXXXXXXDPDIDEMPMVPVSGGGGASKSSLTPEEIKL 185
                          DPDIDE P+     G GA   +  P  I++
Sbjct:   619 ANTAMEWLFGHMEDPDIDE-PLKLEGSGDGAGGFTADPSSIEM 660


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      229       213   0.00084  112 3  11 22  0.40    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.93u 0.10s 22.03t   Elapsed:  00:00:02
  Total cpu time:  21.93u 0.10s 22.03t   Elapsed:  00:00:02
  Start:  Thu May  9 19:01:04 2013   End:  Thu May  9 19:01:06 2013

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038843001 SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (413 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	9e-09
cd00194	38	cd00194, UBA, Ubiquitin Associated domain	6e-08
pfam00627	37	pfam00627, UBA, UBA/TS-N domain	1e-06
smart00165	37	smart00165, UBA, Ubiquitin associated domain	3e-05

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 54.7 bits (131), Expect = 9e-09
 Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 9/85 (10%)

Query: 91  DSEEAIDVD--MSGSQPE-EMVEPEVD------KELLKELEAMGFPVARATRALHYSGNA 141
            S++ I +   MS   P+ E + P+ D      + L+++L  MGFP   A RAL  +GN 
Sbjct: 526 RSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQ 585

Query: 142 NVEAAVNWVVEHENDPDIDEMPMVP 166
           + E+A+NW+ +H +DPD+++  + P
Sbjct: 586 DAESAMNWLFQHMDDPDLNDPFVPP 610

Length = 749

>gnl|CDD|238116 cd00194, UBA, Ubiquitin Associated domain

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152
           D+E L++L  MGF    A +AL  + N NVE AV W++E
Sbjct: 1   DEEKLEQLLEMGFSREEARKALRATNN-NVERAVEWLLE 38

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins. Length = 38

>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain

 Score = 43.6 bits (104), Expect = 1e-06
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNW 149
           +D+EL+K+L  MGF    A +AL  +   NVE AV +
Sbjct: 1   IDEELIKQLREMGFSREEAKKALRATNG-NVERAVEY 36

This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280. Length = 37

>gnl|CDD|197551 smart00165, UBA, Ubiquitin associated domain

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNW 149
           D+E + +L  MGF    A +AL  +   NVE A  +
Sbjct: 1   DEEKIDQLLEMGFSREEALKALRAANG-NVERAAEY 35

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin. Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	99.98
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.96
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	99.16
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	99.12
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	99.02
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	99.01
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	98.68
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	98.0
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	97.95
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	97.9
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	97.78
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	97.73
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	97.72
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	97.67
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	97.65
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	97.58
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	97.58
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	97.56
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	97.51
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	97.4
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	97.04
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	97.02
KOG1865	545	consensus Ubiquitin carboxyl-terminal hydrolase [P	96.6
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	96.5
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	96.49
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	96.26
PHA02768	55	hypothetical protein; Provisional	96.18
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	95.89
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	95.58
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	95.29
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	94.97
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	94.7
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	94.63
PHA00732	79	hypothetical protein	94.48
smart00546	43	CUE Domain that may be involved in binding ubiquit	94.42
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	93.68
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	93.56
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	93.4
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	93.31
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	93.05
KOG1866	944	consensus Ubiquitin carboxyl-terminal hydrolase [P	92.9
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	91.72
KOG4598	1203	consensus Putative ubiquitin-specific protease [Po	91.16
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	90.75
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	90.23
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	89.9
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	89.7
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	89.7
PRK12332	198	tsf elongation factor Ts; Reviewed	89.56
KOG2699	407	consensus Predicted ubiquitin regulatory protein [	89.52
PRK09377	290	tsf elongation factor Ts; Provisional	89.21
TIGR00116	290	tsf translation elongation factor Ts. This protein	89.1
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	88.35
PRK06369	115	nac nascent polypeptide-associated complex protein	88.28
KOG1868	653	consensus Ubiquitin C-terminal hydrolase [Posttran	87.37
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	87.23
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	87.2
COG5189	423	SFP1 Putative transcriptional repressor regulating	87.13
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	87.02
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	86.83
COG1773	55	Rubredoxin [Energy production and conversion]	86.57
CHL00098	200	tsf elongation factor Ts	86.51
PHA00733	128	hypothetical protein	86.34
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	86.1
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	84.22
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	83.51
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	83.46
smart00355	26	ZnF_C2H2 zinc finger.	83.0
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	82.75
cd00730	50	rubredoxin Rubredoxin; nonheme iron binding domain	82.62
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	82.25
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	81.56
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	81.54
smart00531	147	TFIIE Transcription initiation factor IIE.	81.27
PHA00616	44	hypothetical protein	80.72
PRK12380	113	hydrogenase nickel incorporation protein HybF; Pro	80.43

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.8e-33  Score=273.60  Aligned_cols=192  Identities=25%  Similarity=0.361  Sum_probs=152.3

Q ss_pred             CcceeeccccccccCCHHH---HHHHHH----HhCCCCCCchhh-----hhhhccCCCCCCCCCCccccccccccccccc
Q 027011            2 AGVSLKCGDCGALLRSVQE---AQEHAE----LTSHSNFSESTE-----AVLNLVCATCGKPCRSKTETDLHRKRTGHTD   69 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~---aq~Ha~----~T~H~nFse~~E-----~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~T   69 (229)
                      +.-|++|.-|++|=-+...   .|--..    .--..+|+++-|     .+.+|.|++||.|       ++|+|+++|+|
T Consensus       437 ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~df~s~ac~~K-------~~a~kt~~~ks  509 (763)
T KOG0944|consen  437 VEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQVDDFWSTACGEK-------KGATKTTRFKS  509 (763)
T ss_pred             hhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcchhhhhHhhcCc-------ccccccccccc
Confidence            4568999999999111110   000000    102234444422     4678999999998       89999999999


Q ss_pred             ccchhhhccccccccc--Cccc---cCCcccccCCC----CCCCCCcccCC--------CCCHHHHHHHHhCCCCHHHHH
Q 027011           70 FVDKTSEAAKPISLEV--PKAT---ADSEEAIDVDM----SGSQPEEMVEP--------EVDKELLKELEAMGFPVARAT  132 (229)
Q Consensus        70 FPd~Lvv~~~r~~l~~--P~Kl---v~~~e~lDls~----g~~~gEe~l~~--------~vd~~~l~qL~eMGF~~~~a~  132 (229)
                      ||+||+||+.||.+.+  |+|+   +++||.|||+.    |.|||||.+++        ..|+..+.||++||||.++|+
T Consensus       510 fP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~  589 (763)
T KOG0944|consen  510 FPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACR  589 (763)
T ss_pred             CCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHH
Confidence            9999999999999987  9999   47899999998    76899998843        379999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 027011          133 RALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGA------------SKSSLTPEEIKLKAQELRYGIFYAVYF  200 (229)
Q Consensus       133 kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~~s~s~~------------~~~~LTeEEkkaK~~ELr~ki~~~~~~  200 (229)
                      |||++|||++.|+|+|||++||+|||+++|+.+|+.+....            -...+++-.+.+-|...-..+.|++++
T Consensus       590 rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDW  669 (763)
T KOG0944|consen  590 RALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDW  669 (763)
T ss_pred             HHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHH
Confidence            99999999999999999999999999999999887532211            023467888888888888899999863

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.3e-29  Score=240.37  Aligned_cols=189  Identities=21%  Similarity=0.324  Sum_probs=154.8

Q ss_pred             CCcceeeccccccc-------------cCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCccccccccccccc
Q 027011            1 MAGVSLKCGDCGAL-------------LRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGH   67 (229)
Q Consensus         1 ~~~~slkC~~Cg~~-------------L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f   67 (229)
                      ++..+|+|..|+++             |.+++++|..-++ -...|.+.   .++++|.+|+.+       .+|+|+++|
T Consensus       427 e~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~-v~a~f~pd---tiE~~CenCk~K-------~~a~~k~~~  495 (749)
T COG5207         427 EVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKS-VEAFFLPD---TIEWSCENCKGK-------KKASRKPFI  495 (749)
T ss_pred             hhcceecccccccccccccceEEEEeecccCcchhhHHHH-HHheECcc---ceeeehhhhcCc-------ccccccchh
Confidence            35679999999999             8899999998887 77888876   568999999887       899999999


Q ss_pred             ccccchhhhccccccccc--Cccc---c--CCcccccCCC--CC-CCCCcccC------CCCCHHHHHHHHhCCCCHHHH
Q 027011           68 TDFVDKTSEAAKPISLEV--PKAT---A--DSEEAIDVDM--SG-SQPEEMVE------PEVDKELLKELEAMGFPVARA  131 (229)
Q Consensus        68 ~TFPd~Lvv~~~r~~l~~--P~Kl---v--~~~e~lDls~--g~-~~gEe~l~------~~vd~~~l~qL~eMGF~~~~a  131 (229)
                      +|||+||++|+.||.|.|  ..|+   +  ..++.++++.  +. .|..|.+.      ...|+.++.||++||||.++|
T Consensus       496 kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~  575 (749)
T COG5207         496 KSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDA  575 (749)
T ss_pred             hccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHH
Confidence            999999999999999999  6666   2  3456788887  32 34444332      236899999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCC----CC-CC------CCCCCHHHHHHHHHHHHHHHHHhhcc
Q 027011          132 TRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG----GG-AS------KSSLTPEEIKLKAQELRYGIFYAVYF  200 (229)
Q Consensus       132 ~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~~s~----s~-~~------~~~LTeEEkkaK~~ELr~ki~~~~~~  200 (229)
                      .|||..|||.+.|.||||||+||||||+++|+.+|+...    +. +.      ...||+.-.+.-+.+.+..+.|+|.+
T Consensus       576 ~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w  655 (749)
T COG5207         576 ARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVW  655 (749)
T ss_pred             HHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEE
Confidence            999999999999999999999999999999998766411    10 10      23577778888888888888888765

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=99.16  E-value=3.5e-11  Score=77.97  Aligned_cols=37  Identities=41%  Similarity=0.701  Sum_probs=34.2

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHH
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWV  150 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL  150 (229)
                      +|++.|++|++|||++++|++||+.++| |++.|++||
T Consensus         1 i~~~~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L   37 (37)
T PF00627_consen    1 IDEEKVQQLMEMGFSREQAREALRACNG-NVERAVDWL   37 (37)
T ss_dssp             SHHHHHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence            4788999999999999999999999998 999999998

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.2e-10  Score=105.48  Aligned_cols=81  Identities=30%  Similarity=0.476  Sum_probs=67.3

Q ss_pred             HHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHH-HhCCCCCCCCCCCCCCCC--------------------CCCCCCCC
Q 027011          118 LKELEAMGFPVARATRALHYSGNANVEAAVNWV-VEHENDPDIDEMPMVPVS--------------------GGGGASKS  176 (229)
Q Consensus       118 l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL-~~h~dD~did~pl~~p~~--------------------s~s~~~~~  176 (229)
                      +++|++||||..++.+||.-+||.++|.||+|| .+|.+||. +.|...|..                    +++.+.++
T Consensus         4 ~~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~~d~~~d~~-~ap~~~p~~~~~~~~~~~~~sg~~~~s~~se~~e~ik   82 (290)
T KOG2689|consen    4 AQSLEEMGFPSGKAEKALAVYGNRGIEQALDWLEMDHAGDPI-DAPLSTPLAADLGRLPTSFESGKLSDSGYSESEEEIK   82 (290)
T ss_pred             HHHHHHhcCchhhhhhHhhhhccccHHHHHHHHHhcccCCCc-cccccccchhhhhcccchhcCCCcCCchhhhhhhhcc
Confidence            489999999999999999999999999999999 78888876 555433221                    33446799


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhc
Q 027011          177 SLTPEEIKLKAQELRYGIFYAVY  199 (229)
Q Consensus       177 ~LTeEEkkaK~~ELr~ki~~~~~  199 (229)
                      .||+||++++.+.|+++|.++..
T Consensus        83 ~ls~eE~~~~~~~i~ekik~k~~  105 (290)
T KOG2689|consen   83 LLSEEEKKAQTKRILEKIKQKQI  105 (290)
T ss_pred             ccChHHHHHHHHHHHHHhcchhH
Confidence            99999999999999999987653

>smart00165 UBA Ubiquitin associated domain

Probab=99.02  E-value=5e-10  Score=71.85  Aligned_cols=37  Identities=35%  Similarity=0.560  Sum_probs=34.6

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~  151 (229)
                      +++.+++|++|||++++|++||+.++| +++.|++|||
T Consensus         1 ~~~~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~   37 (37)
T smart00165        1 DEEKIDQLLEMGFSREEALKALRAANG-NVERAAEYLL   37 (37)
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence            367899999999999999999999998 8999999996

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>cd00194 UBA Ubiquitin Associated domain

Probab=99.01  E-value=6.9e-10  Score=71.50  Aligned_cols=38  Identities=47%  Similarity=0.754  Sum_probs=35.4

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      +++.+++|++|||++++|++||..++| |++.|++||++
T Consensus         1 ~~~~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~~   38 (38)
T cd00194           1 DEEKLEQLLEMGFSREEARKALRATNN-NVERAVEWLLE   38 (38)
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHhC
Confidence            367899999999999999999999998 99999999984

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=2.1e-08  Score=100.03  Aligned_cols=51  Identities=39%  Similarity=0.616  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCC
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMP  163 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl  163 (229)
                      +++++.|..+++|||++++|++||++++| |+|+|++|||+|+|++-+|.++
T Consensus       633 ~~~e~~v~si~smGf~~~qa~~aL~~~n~-nveravDWif~h~d~~~ed~~~  683 (763)
T KOG0944|consen  633 EVDEESVASIVSMGFSRNQAIKALKATNN-NVERAVDWIFSHMDIPVEDAAE  683 (763)
T ss_pred             CCChhHheeeeeecCcHHHHHHHHHhcCc-cHHHHHHHHHhcccccccccCc
Confidence            58999999999999999999999999987 9999999999999966555544

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=98.00  E-value=3.6e-06  Score=76.65  Aligned_cols=52  Identities=12%  Similarity=0.131  Sum_probs=44.9

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      .+.|+.|+++       ..+.|++.|.++|++|+|+.+||.++.    ..|+   |..|..|||+.
T Consensus       154 ~~~C~~C~~~-------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~  212 (327)
T cd02664         154 QYYCEKCASL-------QDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPV  212 (327)
T ss_pred             ceeCCccCCc-------cceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCc
Confidence            4899999987       689999999999999999999999874    5677   45677888875

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=97.95  E-value=1.9e-06  Score=77.11  Aligned_cols=51  Identities=10%  Similarity=0.156  Sum_probs=44.6

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc---Cccc---cCCcccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~---P~Kl---v~~~e~lDls~  100 (229)
                      +.|+.|+++       +.+.|+..|.++|++|+|+.+||..+.   +.|+   |..|+.|||+.
T Consensus       196 ~~C~~C~~~-------~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~  252 (328)
T cd02660         196 YKCSGCGST-------QEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTP  252 (328)
T ss_pred             ccCCCCCCc-------cceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhh
Confidence            689999997       689999999999999999999999985   6787   45677888875

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=97.90  E-value=1.6e-05  Score=75.36  Aligned_cols=43  Identities=23%  Similarity=0.352  Sum_probs=39.2

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      ..+..|++|++|||+|+++++||++.-| |.++|++||+....+
T Consensus       155 ~~e~~I~~i~eMGf~R~qV~~ALRAafN-NPdRAVEYL~tGIP~  197 (378)
T TIGR00601       155 ERETTIEEIMEMGYEREEVERALRAAFN-NPDRAVEYLLTGIPE  197 (378)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhC-CHHHHHHHHHhCCCc
Confidence            3578999999999999999999999988 999999999988653

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=97.78  E-value=4.7e-06  Score=74.06  Aligned_cols=48  Identities=15%  Similarity=0.173  Sum_probs=42.3

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc---Cccc---cCCcccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~---P~Kl---v~~~e~lDls~  100 (229)
                      +.|+.|++          |+|++.|.++|++|+|+.+||..+.   +.|+   |..|+.|||+.
T Consensus       132 ~~C~~C~~----------a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~  185 (279)
T cd02667         132 FACENCTK----------AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP  185 (279)
T ss_pred             ccCCccCc----------eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhh
Confidence            89999977          6899999999999999999999995   6887   46688899986

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=97.73  E-value=2.6e-05  Score=69.87  Aligned_cols=52  Identities=10%  Similarity=0.015  Sum_probs=44.1

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      .+.|+.|+++       ..++|+..|..+|++|+|+.+||....    ..|+   |..|..||+..
T Consensus       167 ~~~C~~C~~~-------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~  225 (300)
T cd02663         167 KFYCDECCSL-------QEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFN  225 (300)
T ss_pred             cEECCCCCCc-------eeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccc
Confidence            4899999987       689999999999999999999999884    5676   45677788764

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=97.72  E-value=1.1e-05  Score=71.73  Aligned_cols=51  Identities=8%  Similarity=-0.044  Sum_probs=42.1

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      ..|+.|+..       ..++|+..|.++|++|+|+.+||.+..    ..|+   |..|..||++.
T Consensus       176 ~~~~~~~~~-------~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~  233 (305)
T cd02657         176 KHSPTLGRD-------AIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYE  233 (305)
T ss_pred             hcCcccCCC-------ceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEeccc
Confidence            579999886       678999999999999999999999875    4455   45677888874

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=97.67  E-value=2.2e-05  Score=68.77  Aligned_cols=51  Identities=16%  Similarity=0.060  Sum_probs=43.4

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhcccccccccCccc---cCCcccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKAT---ADSEEAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~P~Kl---v~~~e~lDls~  100 (229)
                      +.|+.||++       ..+.|+..+.++|++|+|+.+||......|+   +..|+.|||+.
T Consensus       183 ~~C~~C~~~-------~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~  236 (304)
T cd02661         183 YKCERCKKK-------VKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSP  236 (304)
T ss_pred             eeCCCCCCc-------cceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhh
Confidence            799999997       6789999999999999999999999865565   45567788875

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=97.65  E-value=1.1e-05  Score=72.00  Aligned_cols=43  Identities=28%  Similarity=0.382  Sum_probs=38.3

Q ss_pred             hhhccCCCCCCCCCCcccccccccccccccccchhhhcccccccc-c--Cccc
Q 027011           40 VLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLE-V--PKAT   89 (229)
Q Consensus        40 vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~-~--P~Kl   89 (229)
                      .++..|+.||++       ..+.|+..+.++|++|+|+.+||... +  |+|+
T Consensus       192 ~i~~~C~~C~~~-------~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki  237 (311)
T cd02658         192 TIEDFCSTCKEK-------TTATKTTGFKTFPDYLVINMKRFQLLENWVPKKL  237 (311)
T ss_pred             cccccccCCCCc-------ccEEEEEEeecCCceEEEEeEEEEecCCCceEee
Confidence            456789999987       78999999999999999999999994 3  8887

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=97.58  E-value=4.1e-05  Score=64.81  Aligned_cols=52  Identities=13%  Similarity=0.150  Sum_probs=42.3

Q ss_pred             hhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCc-ccccCC
Q 027011           41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVD   99 (229)
Q Consensus        41 l~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~-e~lDls   99 (229)
                      ..+.|+.||++       ..+.++..|.++|++|+|+.+||...+  ..|+   |..| +.+|++
T Consensus       103 ~~~~C~~C~~~-------~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~  160 (230)
T cd02674         103 NAWKCPKCKKK-------RKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLT  160 (230)
T ss_pred             CceeCCCCCCc-------cceEEEEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccc
Confidence            45899999987       778999999999999999999999986  6666   3333 456665

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=97.58  E-value=5.4e-05  Score=69.92  Aligned_cols=52  Identities=6%  Similarity=0.043  Sum_probs=41.4

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--------Cccc---cCCcccccCCC
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--------PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--------P~Kl---v~~~e~lDls~  100 (229)
                      .+.|+.|+++       +.|+|+..|.++|++|+|+.+||....        ..|+   |..|..||+..
T Consensus       200 ~y~C~~C~~~-------~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~  262 (332)
T cd02671         200 KYFCENCHHY-------TEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEE  262 (332)
T ss_pred             CeeCCCCCCc-------eeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcccccccc
Confidence            4999999987       789999999999999999999999652        4455   34455566653

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=97.56  E-value=3.9e-05  Score=68.89  Aligned_cols=52  Identities=13%  Similarity=0.184  Sum_probs=44.4

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      .+.|+.|+++       ..+.|+..|.++|++|+|+.+||..+.    .+|+   |..|..||++.
T Consensus       171 ~~~C~~C~~~-------~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~  229 (334)
T cd02659         171 KYFCEKCGKK-------VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEP  229 (334)
T ss_pred             cEecCcCCCc-------ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCcc
Confidence            3899999997       689999999999999999999999863    5666   45678888885

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=97.51  E-value=2.8e-05  Score=70.42  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=45.3

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      .+.|+.|+++       ..+.|+..|.++|++|+|+.+||.++.    +.|+   |..|+.|||+.
T Consensus       176 ~~~C~~C~~~-------~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~  234 (324)
T cd02668         176 QYFCESCNSK-------TDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGE  234 (324)
T ss_pred             cccCCCCCce-------eeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechh
Confidence            3899999987       789999999999999999999999874    6777   46678899885

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=97.40  E-value=4.2e-05  Score=67.97  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=33.0

Q ss_pred             hhhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc
Q 027011           40 VLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV   85 (229)
Q Consensus        40 vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~   85 (229)
                      ..++.|+.|+++        .+.|+.+|.++|++|+|+.+||.+..
T Consensus       124 ~~e~~C~~C~~~--------~a~k~~~i~~~P~vL~i~lkRf~~~~  161 (245)
T cd02673         124 PIEKDCSSCKCE--------SAISSERIMTFPECLSINLKRYKLRI  161 (245)
T ss_pred             ccCccCCCCCCc--------cceeechhhhCChhhEEeeEeeeecc
Confidence            457899999874        67899999999999999999997654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=97.04  E-value=0.0013  Score=61.59  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      ..+..+.+|++||++++..++||++.-| |.++|++||.....+
T Consensus       134 ~~e~~V~~Im~MGy~re~V~~AlRAafN-NPeRAVEYLl~GIP~  176 (340)
T KOG0011|consen  134 EYEQTVQQIMEMGYDREEVERALRAAFN-NPERAVEYLLNGIPE  176 (340)
T ss_pred             hhHHHHHHHHHhCccHHHHHHHHHHhhC-ChhhhHHHHhcCCcc
Confidence            4678899999999999999999999988 999999999987654

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00032  Score=69.33  Aligned_cols=50  Identities=20%  Similarity=0.302  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEM  162 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~p  162 (229)
                      .+||+..+..|++|||.++.|+|||..+++ +++++++|++.|.| ..+.+|
T Consensus       618 keVdE~~~~Slle~Gln~n~~Rkal~~~n~-d~~r~V~w~~N~~D-~tF~EP  667 (749)
T COG5207         618 KEVDESKARSLLENGLNPNLCRKALMDMNT-DSKRRVVWCINDDD-GTFPEP  667 (749)
T ss_pred             ccccHHHHHHHHHcCCCHHHHHHHHHHccC-CchheEEEEEeCCC-CCCCCC
Confidence            368999999999999999999999999866 99999999999643 334444

>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0016  Score=64.42  Aligned_cols=60  Identities=13%  Similarity=0.064  Sum_probs=51.4

Q ss_pred             hhccCCCCCCCCCCcccccccccccccccccchhhhcccccccccCccc---cCCcccccCCC-CCCCCCc
Q 027011           41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKAT---ADSEEAIDVDM-SGSQPEE  107 (229)
Q Consensus        41 l~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~P~Kl---v~~~e~lDls~-g~~~gEe  107 (229)
                      --|+|..|.++       +.|.|+..+..-|.+|.|+.|||+...--|+   |..|+.|||.+ -.+++|.
T Consensus       285 n~Y~C~~Ck~~-------v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~  348 (545)
T KOG1865|consen  285 NAYHCGRCKQK-------VPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPNEG  348 (545)
T ss_pred             cccccchhhhh-------CcccceeeeecCCceEEEeeehhccCcccccccccCCcccccccccccCCCCC
Confidence            34999999987       8999999999999999999999999876676   66799999998 3355554

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=96.50  E-value=0.0041  Score=59.24  Aligned_cols=42  Identities=29%  Similarity=0.408  Sum_probs=38.5

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      +.++|+.|.+|||++..+..|-++.+ +|.|.|.||||+|..|
T Consensus       337 E~~AIeRL~~LGF~r~~viqaY~ACd-KNEelAAn~Lf~~~~~  378 (378)
T TIGR00601       337 EKEAIERLCALGFDRGLVIQAYFACD-KNEELAANYLLSQNFD  378 (378)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHhcC-CcHHHHHHHHHhhcCC
Confidence            67899999999999999999999975 6999999999998665

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.49  E-value=0.0066  Score=59.34  Aligned_cols=48  Identities=31%  Similarity=0.385  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Q 027011          110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD  158 (229)
Q Consensus       110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~d  158 (229)
                      ++++|...|.+|+.|||++..|+-||..+|| +++.|...|..+...+.
T Consensus       425 p~~vd~~~la~Lv~mGF~e~~A~~ALe~~gn-n~~~a~~~L~~s~~n~~  472 (568)
T KOG2561|consen  425 PEQVDGISLAELVSMGFEEGKARSALEAGGN-NEDTAQRLLSASVANEG  472 (568)
T ss_pred             CcccchhhHHHHHHhccccchHHHHHHhcCC-cHHHHHHHHHHhCCCCc
Confidence            5668999999999999999999999999888 99999999987766554

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=96.26  E-value=0.0061  Score=57.21  Aligned_cols=40  Identities=38%  Similarity=0.605  Sum_probs=37.2

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      +.++++.|.+|||++..+..|.++. ++|.|.|.||||+|+
T Consensus       298 e~eAIeRL~alGF~ralViqayfAC-dKNEelAAN~Ll~~~  337 (340)
T KOG0011|consen  298 EKEAIERLEALGFPRALVIQAYFAC-DKNEELAANYLLSHS  337 (340)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHhc-CccHHHHHHHHHhhc
Confidence            5688999999999999999999987 579999999999998

>PHA02768 hypothetical protein; Provisional

Probab=96.18  E-value=0.0047  Score=44.09  Aligned_cols=40  Identities=25%  Similarity=0.441  Sum_probs=35.0

Q ss_pred             CCcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         1 ~~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      |+-..++|..||+.|......+.|-..  |.         .+++|..|++.
T Consensus         1 ~~~~~y~C~~CGK~Fs~~~~L~~H~r~--H~---------k~~kc~~C~k~   40 (55)
T PHA02768          1 MALLGYECPICGEIYIKRKSMITHLRK--HN---------TNLKLSNCKRI   40 (55)
T ss_pred             CcccccCcchhCCeeccHHHHHHHHHh--cC---------CcccCCcccce
Confidence            455678999999999999999999988  76         37899999985

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=95.89  E-value=0.0025  Score=57.38  Aligned_cols=40  Identities=23%  Similarity=0.164  Sum_probs=35.4

Q ss_pred             hhhhhccCCCCCCCCCCcccccccccccccccccc----hhhhcccccccc
Q 027011           38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVD----KTSEAAKPISLE   84 (229)
Q Consensus        38 E~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd----~Lvv~~~r~~l~   84 (229)
                      |.+..+.|++|+++       ..+.|++++.++|+    +|+||.+||..+
T Consensus       130 E~~~~~~C~~C~~~-------~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~  173 (268)
T cd02672         130 EKVTKAWCDTCCKY-------QPLEQTTSIRHLPDILLLVLVINLSVTNGE  173 (268)
T ss_pred             hhcccccccccCcc-------cccEEEEEeecCCCcccceEEEEEeccChh
Confidence            44557899999987       78999999999999    999999999854

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=95.58  E-value=0.0062  Score=49.78  Aligned_cols=55  Identities=16%  Similarity=0.120  Sum_probs=43.4

Q ss_pred             hhhhhccCCCCC--CCCCCcccccccccccccccccchhhhccccccccc---Cccc---cCCcccccCC
Q 027011           38 EAVLNLVCATCG--KPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVD   99 (229)
Q Consensus        38 E~vl~l~C~~Cg--~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~---P~Kl---v~~~e~lDls   99 (229)
                      +.+....|..|+  +.       ..+.++..+.++|++|+|+.+|+..+.   +.|+   |..++.+++.
T Consensus       112 e~~~~~~~~~c~~~~~-------~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~  174 (255)
T cd02257         112 EILEGDNCYKCEKKKK-------QEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLS  174 (255)
T ss_pred             hccCCCCcccCCCCcc-------cceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCc
Confidence            456667899998  33       678899999999999999999999875   6676   3556666664

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=95.29  E-value=0.018  Score=41.14  Aligned_cols=30  Identities=30%  Similarity=0.542  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCC
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNA  141 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~  141 (229)
                      -+|.++|+++.+|||++.+...||++-|=+
T Consensus         7 Gi~~~lVd~F~~mGF~~dkVvevlrrlgik   36 (55)
T PF09288_consen    7 GIDKDLVDQFENMGFERDKVVEVLRRLGIK   36 (55)
T ss_dssp             --SHHHHHHHHHHT--HHHHHHHHHHS--S
T ss_pred             CCCHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence            479999999999999999999999997643

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.0077  Score=56.77  Aligned_cols=41  Identities=22%  Similarity=0.309  Sum_probs=35.7

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT   89 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl   89 (229)
                      ...||.||++       ..+.|+..+.-.|++|+|+.+||++-.  |+|+
T Consensus       284 ~W~CpkC~~k-------~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~ki  326 (415)
T COG5533         284 AWRCPKCGRK-------ESSRKRMEILVLPDVLIIHISRFHISVMGRKKI  326 (415)
T ss_pred             cccCchhccc-------ccchheEEEEecCceEEEEeeeeeEEeeccccc
Confidence            3789999998       678999999999999999999999654  6664

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=94.70  E-value=0.0095  Score=52.01  Aligned_cols=44  Identities=11%  Similarity=0.136  Sum_probs=34.0

Q ss_pred             hhhhhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc---Cccc---cCCcccc
Q 027011           38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAI   96 (229)
Q Consensus        38 E~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~---P~Kl---v~~~e~l   96 (229)
                      |.+..+.|+.|               ++.|.++|++|+|+.+||.++.   +.|+   |..|+.|
T Consensus       109 E~l~~~~C~~C---------------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l  158 (240)
T cd02662         109 EIIDDYKCDRC---------------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL  158 (240)
T ss_pred             ccccCcCCCCC---------------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc
Confidence            34446899999               3679999999999999999886   7777   3445544

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=94.63  E-value=0.013  Score=56.11  Aligned_cols=56  Identities=11%  Similarity=-0.097  Sum_probs=43.0

Q ss_pred             hhhhhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCccc-ccCCC
Q 027011           38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEEA-IDVDM  100 (229)
Q Consensus        38 E~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~e~-lDls~  100 (229)
                      |-...|.|+.|...       ..++|+..+...|++|+|+.+||...+  ..|.   |..|.. ||+++
T Consensus       307 e~L~ky~~~~c~~~-------~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~  368 (440)
T cd02669         307 QLLKKYDGKTETEL-------KDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSD  368 (440)
T ss_pred             HHHHhcCCccceec-------ccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhh
Confidence            33445899999875       567999999999999999999999875  3444   344553 67775

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PHA00732 hypothetical protein

Probab=94.48  E-value=0.034  Score=42.02  Aligned_cols=36  Identities=28%  Similarity=0.565  Sum_probs=30.4

Q ss_pred             eeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         6 lkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ++|+.||+.+......+.|... .|..          +.|+.||+.+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~-~H~~----------~~C~~CgKsF   37 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARR-NHTL----------TKCPVCNKSY   37 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhc-ccCC----------CccCCCCCEe
Confidence            6899999999999999999875 4653          3799999974

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=94.42  E-value=0.1  Score=34.40  Aligned_cols=38  Identities=34%  Similarity=0.506  Sum_probs=31.5

Q ss_pred             CHHHHHHHHhCCCCH---HHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          114 DKELLKELEAMGFPV---ARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       114 d~~~l~qL~eMGF~~---~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      .++.+++|.+| ||.   ..+++.|...+| +++.|++-|++.
T Consensus         2 ~~~~v~~L~~m-FP~l~~~~I~~~L~~~~g-~ve~~i~~LL~~   42 (43)
T smart00546        2 NDEALHDLKDM-FPNLDEEVIKAVLEANNG-NVEATINNLLEG   42 (43)
T ss_pred             hHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence            46789999999 765   788899998766 899999988763

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.68  E-value=0.078  Score=46.55  Aligned_cols=39  Identities=28%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      .+...++.|.+|||+++.+..+|...+. +++.|.+.+++
T Consensus       161 ~~~~~v~~l~~mGf~~~~~i~~L~~~~w-~~~~a~~~~~s  199 (200)
T KOG0418|consen  161 WDKKKVDSLIEMGFSELEAILVLSGSDW-NLADATEQLLS  199 (200)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHhhcccc-chhhhhHhhcc
Confidence            4678899999999999999999998876 88889888765

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=93.56  E-value=0.23  Score=32.85  Aligned_cols=41  Identities=24%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             HHHHHHH-hCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011          116 ELLKELE-AMGFPVARATRALHYSGNANVEAAVNWVVEHENDP  157 (229)
Q Consensus       116 ~~l~qL~-eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~  157 (229)
                      +.|.+.+ =.|.++..|+.-|..+++ +++.|++-.+++.++|
T Consensus         2 e~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Av~~y~~~~~~~   43 (43)
T PF14555_consen    2 EKIAQFMSITGADEDVAIQYLEANNW-DLEAAVNAYFDDGEAP   43 (43)
T ss_dssp             HHHHHHHHHH-SSHHHHHHHHHHTTT--HHHHHHHHHHSS-S-
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence            3444544 248899999999999988 9999999999887664

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=93.40  E-value=0.26  Score=32.40  Aligned_cols=38  Identities=24%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       115 ~~~l~qL~eM--GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      ++.+++|.+|  .++++..+.+|..++| ++|.|++-|++.
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~-~ve~ai~~LL~~   41 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNG-DVEAAIDALLEM   41 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTT-THHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence            5778999998  3567888999988776 899999999863

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.31  E-value=0.11  Score=51.08  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      ||+..+..|++|||.+..|..||+.+.| ++..|++-|-.|.|.
T Consensus       374 vn~rs~~rL~~mGyer~la~eaL~r~~N-di~~aldllq~esde  416 (568)
T KOG2561|consen  374 VNPRSLERLVSMGYERELAAEALRRNEN-DIQKALDLLQDESDE  416 (568)
T ss_pred             cCHHHHHHHHhcchHhHHHHHHHHhccC-cHHHHHHhcCCcchh
Confidence            7999999999999999999999999987 999999888777664

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.05  E-value=0.077  Score=30.03  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.2

Q ss_pred             eeccccccccCCHHHHHHHHHH
Q 027011            6 LKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         6 lkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ++|.+||+.++.....+.|...
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6899999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=92.90  E-value=0.024  Score=58.41  Aligned_cols=64  Identities=19%  Similarity=0.185  Sum_probs=50.4

Q ss_pred             CCCCCchhh---------hhhhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCc
Q 027011           30 HSNFSESTE---------AVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSE   93 (229)
Q Consensus        30 H~nFse~~E---------~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~   93 (229)
                      |.|..||-|         -.--|.|..|.++       +.-+||+.|+..|.+|+||.+||.++-    -.|-   ...|
T Consensus       245 ~~nLeesLeqfv~gevlEG~nAYhCeKCdeK-------~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP  317 (944)
T KOG1866|consen  245 HQNLEESLEQFVKGEVLEGANAYHCEKCDEK-------VDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP  317 (944)
T ss_pred             cchHHHHHHHHHHHHHhcCcchhhhhhhhhh-------hHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc
Confidence            777777632         2234899999998       788999999999999999999999983    5665   2456


Q ss_pred             ccccCCC
Q 027011           94 EAIDVDM  100 (229)
Q Consensus        94 e~lDls~  100 (229)
                      -.||+++
T Consensus       318 ~~ldMeP  324 (944)
T KOG1866|consen  318 RELDMEP  324 (944)
T ss_pred             hhhcCCc
Confidence            6778776

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.72  E-value=0.036  Score=46.28  Aligned_cols=47  Identities=13%  Similarity=0.292  Sum_probs=34.8

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCc-ccccCCC
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSE-EAIDVDM  100 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~-e~lDls~  100 (229)
                      .++|..|+..            +..|.++|++|+|+.+|+.+..    ..|.   +..| +.|||+.
T Consensus       142 ~~~c~~c~~~------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~  196 (269)
T PF00443_consen  142 SIKCSSCKNS------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSP  196 (269)
T ss_dssp             EEEETTTTCE------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGG
T ss_pred             cccccccccc------------ccccccccceeeeccccceeccccccccccccccccCchhhhhhh
Confidence            5789999873            6889999999999999996653    5666   4567 6899886

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=91.16  E-value=0.052  Score=55.96  Aligned_cols=52  Identities=13%  Similarity=0.163  Sum_probs=44.9

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      .|-|..|+++|       -|.|--+|++||=.|.++.|||.++-    -.||   +-.|+.|||+.
T Consensus       234 qy~ce~ck~k~-------dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~  292 (1203)
T KOG4598|consen  234 QYMCENCKSKQ-------DAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLND  292 (1203)
T ss_pred             HHHHhhhhhhh-------hhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHH
Confidence            38899999984       78899999999999999999999993    6777   35688999875

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=90.75  E-value=0.071  Score=54.31  Aligned_cols=53  Identities=11%  Similarity=0.021  Sum_probs=44.8

Q ss_pred             hhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cC-CcccccCCC
Q 027011           41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---AD-SEEAIDVDM  100 (229)
Q Consensus        41 l~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~-~~e~lDls~  100 (229)
                      ...-||+|+..       -.|+|+.-+-..|++|+|+.+||.-++  +.|.   |+ +-+.|||+.
T Consensus       694 DswyCpgCkef-------rqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~  752 (823)
T COG5560         694 DSWYCPGCKEF-------RQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSG  752 (823)
T ss_pred             ccccCCchHhh-------hhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccc
Confidence            35789999875       789999999999999999999999887  9998   42 345688885

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=90.23  E-value=0.31  Score=26.88  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=18.1

Q ss_pred             eeccccccccCCHHHHHHHHHH
Q 027011            6 LKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         6 lkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ++|+.|++.+++..+.+.|...
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            5899999999999999999875

...

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=89.90  E-value=0.5  Score=46.68  Aligned_cols=38  Identities=29%  Similarity=0.464  Sum_probs=33.3

Q ss_pred             CHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       114 d~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      -+.-++||-+||| ++++..+||.+||+ ++.+|++-|+.
T Consensus       454 ~q~QLeQL~~MGF~nre~nlqAL~atgG-di~aAverll~  492 (493)
T KOG0010|consen  454 YQTQLEQLNDMGFLDREANLQALRATGG-DINAAVERLLG  492 (493)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHhcC-cHHHHHHHHhc
Confidence            4667999999997 57889999999998 99999998763

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=89.70  E-value=0.88  Score=30.74  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=23.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHc---CCCCHHHH
Q 027011          115 KELLKELEAMGFPVARATRALHYS---GNANVEAA  146 (229)
Q Consensus       115 ~~~l~qL~eMGF~~~~a~kAL~~T---gn~~~E~A  146 (229)
                      +++++.|+..||++..+.+|+...   .+.+++..
T Consensus         4 ~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~   38 (47)
T PF07499_consen    4 EDALEALISLGYSKAEAQKAVSKLLEKPGMDVEEL   38 (47)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHH
Confidence            578999999999999999998876   33455543

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=89.70  E-value=0.19  Score=31.77  Aligned_cols=26  Identities=31%  Similarity=0.791  Sum_probs=20.6

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      +++|.+||.+..+..                     .+.+||.||.+
T Consensus         1 ~~~C~~CGy~y~~~~---------------------~~~~CP~Cg~~   26 (33)
T cd00350           1 KYVCPVCGYIYDGEE---------------------APWVCPVCGAP   26 (33)
T ss_pred             CEECCCCCCEECCCc---------------------CCCcCcCCCCc
Confidence            478999999876654                     46799999975

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=89.56  E-value=0.75  Score=40.34  Aligned_cols=41  Identities=27%  Similarity=0.519  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       113 vd~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      ++..++.+|-+ -|.+--.|++||..++| |++.|++||....
T Consensus         3 i~a~~ik~LR~~tga~~~~ck~AL~~~~g-d~~~A~~~lr~~g   44 (198)
T PRK12332          3 ITAKLVKELREKTGAGMMDCKKALEEANG-DMEKAIEWLREKG   44 (198)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhh
Confidence            56778888875 58999999999999988 9999999998764

>KOG2699 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.52  E-value=0.12  Score=49.81  Aligned_cols=123  Identities=24%  Similarity=0.260  Sum_probs=78.1

Q ss_pred             HHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccccccccccccccccchhhhcccccccccCcccc--CCccccc
Q 027011           20 EAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEVPKATA--DSEEAID   97 (229)
Q Consensus        20 ~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~P~Klv--~~~e~lD   97 (229)
                      -.+.|.+-+.|+||+.+...++..             |+++..+.++.+.++.-+.  .+.  +..|.++.  .....+-
T Consensus         4 ~k~~~~ef~~~~~~~ss~~~~~~~-------------e~~~~~~~~s~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~   66 (407)
T KOG2699|consen    4 VKYNFQEFKCKVNLASSLNDVKHQ-------------ESVGEQAHTSSTDQSLPHL--PVT--LDTPWPLLNPAPKVNLL   66 (407)
T ss_pred             HHHHHHHHhhcccccccccchhhh-------------HHHHHHhhccCCCCCCCCC--Ccc--cccchhhhccCCCCccc
Confidence            356788888999999986655542             5677888888777665433  222  22233331  0001111


Q ss_pred             CCC---CCCCCCcccCCCCCHHHHHHHHhCCCCH-HHHHHHHHHcCCCCHHH-HHHHHHhCCCCCCC
Q 027011           98 VDM---SGSQPEEMVEPEVDKELLKELEAMGFPV-ARATRALHYSGNANVEA-AVNWVVEHENDPDI  159 (229)
Q Consensus        98 ls~---g~~~gEe~l~~~vd~~~l~qL~eMGF~~-~~a~kAL~~Tgn~~~E~-A~~WL~~h~dD~di  159 (229)
                      ++.   ..|.......+.+....+.....|||+. .+...+++..|+...++ |.+|.-.|..+...
T Consensus        67 ~~k~~s~gqa~~~~~~~~~~~~i~~~~~~~g~~e~~~t~~~~~~~g~a~~~a~~~~~~~p~~~~~~~  133 (407)
T KOG2699|consen   67 LSKSSSSGQAAKTNRRNIVFNTILARFDIMGRPEAARTSPALHPSGNQSLEAPAVNFKIPFTSEIQR  133 (407)
T ss_pred             cccccccchhhhcccCCcccchhhccccccCCccccccccCcccchhhhhcCCCCcccccccccchh
Confidence            221   1133333444556667778888999999 77778899999977777 89999888776543

>PRK09377 tsf elongation factor Ts; Provisional

Probab=89.21  E-value=0.76  Score=42.59  Aligned_cols=42  Identities=24%  Similarity=0.482  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          112 EVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       112 ~vd~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      .++..++.+|-+ -|.+--.|++||..++| |++.|++||....
T Consensus         3 ~is~~~IK~LR~~Tgagm~dCKkAL~e~~g-D~ekAi~~Lrk~G   45 (290)
T PRK09377          3 AITAALVKELRERTGAGMMDCKKALTEADG-DIEKAIEWLRKKG   45 (290)
T ss_pred             ccCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence            367788888875 59999999999999988 9999999998764

>TIGR00116 tsf translation elongation factor Ts

Probab=89.10  E-value=0.78  Score=42.49  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       113 vd~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      ++..++.+|-+ -|.+--.|++||..++| |++.|++||..+.
T Consensus         3 isa~~IK~LRe~Tgagm~dCKkAL~e~~g-DiekAi~~LRkkG   44 (290)
T TIGR00116         3 ITAQLVKELRERTGAGMMDCKKALTEANG-DFEKAIKNLRESG   44 (290)
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence            67788888875 59999999999999998 9999999998764

This protein is found in Bacteria, mitochondria, and chloroplasts.

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=88.35  E-value=0.33  Score=44.82  Aligned_cols=40  Identities=28%  Similarity=0.635  Sum_probs=20.6

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      .+.|.|..|||-|.|--....|...  |++       ++.|.|+.|||.
T Consensus       213 EKPF~C~hC~kAFADRSNLRAHmQT--HS~-------~K~~qC~~C~Ks  252 (279)
T KOG2462|consen  213 EKPFSCPHCGKAFADRSNLRAHMQT--HSD-------VKKHQCPRCGKS  252 (279)
T ss_pred             CCCccCCcccchhcchHHHHHHHHh--hcC-------CccccCcchhhH
Confidence            3445555555555555555555544  333       244666666663

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=88.28  E-value=1.4  Score=35.86  Aligned_cols=41  Identities=17%  Similarity=0.227  Sum_probs=36.1

Q ss_pred             CCCCHHHHHHHH-hCCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          111 PEVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       111 ~~vd~~~l~qL~-eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      ..++++.++.++ .-|-+++.|++||..++| |+-.|+-+|.+
T Consensus        73 ~~i~~edI~lv~~q~gvs~~~A~~AL~~~~g-Dl~~AI~~L~~  114 (115)
T PRK06369         73 VEIPEEDIELVAEQTGVSEEEARKALEEANG-DLAEAILKLSS  114 (115)
T ss_pred             CCCCHHHHHHHHHHHCcCHHHHHHHHHHcCC-cHHHHHHHHhc
Confidence            568999999887 468999999999999988 99999998865

>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=87.37  E-value=0.26  Score=50.23  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             ccCCCCCCCCCCccccccc--ccccccccccchhhhccccccccc
Q 027011           43 LVCATCGKPCRSKTETDLH--RKRTGHTDFVDKTSEAAKPISLEV   85 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a--~K~t~f~TFPd~Lvv~~~r~~l~~   85 (229)
                      ..||.|+++       ...  .|+.-|-.||++|+|+++||....
T Consensus       518 w~Cp~c~~~-------~~~~~lK~~~i~~lp~iLiihL~Rf~~~~  555 (653)
T KOG1868|consen  518 WLCPRCKHK-------ESSKTLKKLTILRLPKILIIHLKRFSSDG  555 (653)
T ss_pred             cCCccccCc-------ccccccceeeeecCCHHHHHHHHHhccCc
Confidence            799999987       222  499999999999999999999994

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=87.23  E-value=0.13  Score=37.67  Aligned_cols=64  Identities=22%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             eccccccccCCHHHHHHHHHHhCCC-CCCch-------------hhhhhh-ccCCCCCCCCCCccccccccccccccccc
Q 027011            7 KCGDCGALLRSVQEAQEHAELTSHS-NFSES-------------TEAVLN-LVCATCGKPCRSKTETDLHRKRTGHTDFV   71 (229)
Q Consensus         7 kC~~Cg~~L~~~~~aq~Ha~~T~H~-nFse~-------------~E~vl~-l~C~~Cg~~~~~~~E~~~a~K~t~f~TFP   71 (229)
                      +|..|+..+.+......|... -|. ++...             ...+.. +.|+.|++.+++......|.++.++..+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~-~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~   79 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKK-KHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHHKKRN   79 (100)
T ss_dssp             -------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred             Ccccccccccccccccccccc-ccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence            699999999999999999876 665 33321             123444 89999999888888877788777776543

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=87.20  E-value=0.22  Score=44.59  Aligned_cols=40  Identities=8%  Similarity=-0.127  Sum_probs=32.8

Q ss_pred             cccccccccccchhhhccccccccc--Cccc---cCCcccccCCC
Q 027011           61 HRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        61 a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~e~lDls~  100 (229)
                      +.+...|..+|++|+|+.|||....  +.|+   |..|..|||+.
T Consensus        89 ~~~~e~i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~  133 (241)
T cd02670          89 YFNNSVFAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPD  133 (241)
T ss_pred             HhchhhhhhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchh
Confidence            3444449999999999999999986  7888   56788899986

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=87.13  E-value=0.3  Score=46.34  Aligned_cols=48  Identities=23%  Similarity=0.372  Sum_probs=38.3

Q ss_pred             cceeeccc--cccccCCHHHHHHHHHHhCCCCC------Cch-----hhhhhhccCCCCCCC
Q 027011            3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNF------SES-----TEAVLNLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nF------se~-----~E~vl~l~C~~Cg~~   51 (229)
                      ++.|||.+  |.|..+++++..+|.-. ||.|=      ++.     ...-++|+|+.|+|.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lh-GH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KR  407 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLH-GHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKR  407 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhc-cccCcccCCCCCccccccccccCCceeccccchh
Confidence            47899998  99999999999999988 99432      111     123589999999986

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=87.02  E-value=0.22  Score=44.24  Aligned_cols=31  Identities=6%  Similarity=-0.007  Sum_probs=26.4

Q ss_pred             cccccccccccccchhhhccccccccc--Cccc
Q 027011           59 DLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT   89 (229)
Q Consensus        59 ~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl   89 (229)
                      ..+.|+..|..+|++|+|+.+||....  ..|+
T Consensus       117 ~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki  149 (228)
T cd02665         117 VKSGQERWFTELPPVLTFELSRFEFNQGRPEKI  149 (228)
T ss_pred             hhhhhhhhhhhCChhhEEEeEeeEEcCCccEEC
Confidence            346788899999999999999999975  6666

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=86.83  E-value=0.74  Score=33.64  Aligned_cols=32  Identities=28%  Similarity=0.484  Sum_probs=26.7

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCCCCCch
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSES   36 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~   36 (229)
                      .+.|..|++.+++....+.|....+|......
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~~   81 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNSE   81 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S--
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCcccc
Confidence            58999999999999999999999999998653

>COG1773 Rubredoxin [Energy production and conversion]

Probab=86.57  E-value=0.13  Score=36.82  Aligned_cols=43  Identities=19%  Similarity=0.431  Sum_probs=34.3

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK   50 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~   50 (229)
                      .+++|..||.+......-..+... +-+-|++.   -.+.+||-||-
T Consensus         2 ~~~~C~~CG~vYd~e~Gdp~~gi~-pgT~fedl---Pd~w~CP~Cg~   44 (55)
T COG1773           2 KRWRCSVCGYVYDPEKGDPRCGIA-PGTPFEDL---PDDWVCPECGV   44 (55)
T ss_pred             CceEecCCceEeccccCCccCCCC-CCCchhhC---CCccCCCCCCC
Confidence            379999999999998888887777 44558776   34689999984

>CHL00098 tsf elongation factor Ts

Probab=86.51  E-value=1.4  Score=38.72  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=32.4

Q ss_pred             HHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       116 ~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      .++.+|-+ -|-+--.|++||..++| |++.|++||..+.
T Consensus         3 ~~ik~LR~~Tgag~~dck~AL~e~~g-d~~~A~~~Lr~~g   41 (200)
T CHL00098          3 ELVKELRDKTGAGMMDCKKALQEANG-DFEKALESLRQKG   41 (200)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCC-CHHHHHHHHHHhh
Confidence            45667764 58999999999999998 9999999998764

>PHA00733 hypothetical protein

Probab=86.34  E-value=0.9  Score=36.99  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=27.2

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ..++|..||+.++.......|-....           .+++|+.|++.+
T Consensus        72 kPy~C~~Cgk~Fss~s~L~~H~r~h~-----------~~~~C~~CgK~F  109 (128)
T PHA00733         72 SPYVCPLCLMPFSSSVSLKQHIRYTE-----------HSKVCPVCGKEF  109 (128)
T ss_pred             CCccCCCCCCcCCCHHHHHHHHhcCC-----------cCccCCCCCCcc
Confidence            45788888888888888887766411           137888888863

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=86.10  E-value=0.36  Score=32.32  Aligned_cols=29  Identities=28%  Similarity=0.568  Sum_probs=20.4

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ..|+|..||..+.-.                +.   ....+||.||.+
T Consensus         2 ~~y~C~~CG~~~~~~----------------~~---~~~~~Cp~CG~~   30 (46)
T PRK00398          2 AEYKCARCGREVELD----------------EY---GTGVRCPYCGYR   30 (46)
T ss_pred             CEEECCCCCCEEEEC----------------CC---CCceECCCCCCe
Confidence            358999999876542                11   115799999986

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=84.22  E-value=0.79  Score=26.76  Aligned_cols=21  Identities=29%  Similarity=0.790  Sum_probs=19.3

Q ss_pred             eeccccccccCCHHHHHHHHH
Q 027011            6 LKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         6 lkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ++|+.|++.|.+...-..|-.
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            789999999999999999973

>TIGR00264 alpha-NAC-related protein

Probab=83.51  E-value=2.9  Score=34.08  Aligned_cols=39  Identities=18%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             CCCHHHHHHHH-hCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 027011          112 EVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       112 ~vd~~~l~qL~-eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~  151 (229)
                      +++++.++.++ .-|-+++.|++||..++| |+-.|+-+|.
T Consensus        76 ~i~~eDI~lV~eq~gvs~e~A~~AL~~~~g-Dl~~AI~~L~  115 (116)
T TIGR00264        76 EITEDDIELVMKQCNVSKEEARRALEECGG-DLAEAIMKLE  115 (116)
T ss_pred             CCCHHHHHHHHHHhCcCHHHHHHHHHHcCC-CHHHHHHHhh
Confidence            58999999887 468999999999999988 9999998875

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=83.46  E-value=0.68  Score=29.62  Aligned_cols=26  Identities=27%  Similarity=0.653  Sum_probs=20.3

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      .++|.+||.+..+..                     .+-+||.||.+
T Consensus         2 ~~~C~~CG~i~~g~~---------------------~p~~CP~Cg~~   27 (34)
T cd00729           2 VWVCPVCGYIHEGEE---------------------APEKCPICGAP   27 (34)
T ss_pred             eEECCCCCCEeECCc---------------------CCCcCcCCCCc
Confidence            478999999877642                     24599999986

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>smart00355 ZnF_C2H2 zinc finger

Probab=83.00  E-value=0.89  Score=25.08  Aligned_cols=21  Identities=29%  Similarity=0.790  Sum_probs=19.0

Q ss_pred             eeccccccccCCHHHHHHHHH
Q 027011            6 LKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         6 lkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ++|..|++.+++....+.|-.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            579999999999999999976

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=82.75  E-value=0.47  Score=43.80  Aligned_cols=55  Identities=22%  Similarity=0.436  Sum_probs=39.7

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccccccccc
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKR   64 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~~~a~K~   64 (229)
                      -+++|.+|||.+.+....-.      |..|.-+-++.+-+.|+.|||...|..+...++.+
T Consensus       129 ~r~~c~eCgk~ysT~snLsr------HkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirT  183 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSR------HKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRT  183 (279)
T ss_pred             Cceeccccccccccccccch------hhcccccccccccccCCCCCceeeehHHHhhHhhc
Confidence            47899999999887765433      55555555557789999999987666666555544

>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center

Probab=82.62  E-value=0.23  Score=34.60  Aligned_cols=43  Identities=19%  Similarity=0.480  Sum_probs=27.6

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      +++|..||.+.....+-..+....| +.|.+-   -.+++||.||.+
T Consensus         1 ~y~C~~CgyiYd~~~Gd~~~~i~pG-t~f~~L---p~~w~CP~C~a~   43 (50)
T cd00730           1 KYECRICGYIYDPAEGDPDEGIPPG-TPFEDL---PDDWVCPVCGAG   43 (50)
T ss_pred             CcCCCCCCeEECCCCCCcccCcCCC-CCHhHC---CCCCCCCCCCCc
Confidence            5799999999776554433433322 234442   335899999875

Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=82.25  E-value=0.72  Score=32.27  Aligned_cols=31  Identities=29%  Similarity=0.662  Sum_probs=22.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      +-..|+|..||+.+                   +..+.-....||.||..
T Consensus         3 ~~~~Y~C~~Cg~~~-------------------~~~~~~~~irCp~Cg~r   33 (49)
T COG1996           3 AMMEYKCARCGREV-------------------ELDQETRGIRCPYCGSR   33 (49)
T ss_pred             ceEEEEhhhcCCee-------------------ehhhccCceeCCCCCcE
Confidence            34689999999988                   22223456799999975

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=81.56  E-value=0.57  Score=38.50  Aligned_cols=48  Identities=23%  Similarity=0.390  Sum_probs=26.2

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhh-hhccCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAV-LNLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~v-l~l~C~~Cg~~   51 (229)
                      ...++|.+||..+.-.++.+.. .-+-+.-+.=..|.+ ..+.||.||+.
T Consensus        68 p~~~~C~~CG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~CP~Cgs~  116 (135)
T PRK03824         68 EAVLKCRNCGNEWSLKEVKESL-DEEIREAIHFIPEVVHAFLKCPKCGSR  116 (135)
T ss_pred             ceEEECCCCCCEEecccccccc-cccccccccccccccccCcCCcCCCCC
Confidence            4678999999887655322221 111222222222222 23679999985

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=81.54  E-value=0.64  Score=48.28  Aligned_cols=40  Identities=28%  Similarity=0.612  Sum_probs=31.9

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      .++||.+|||-|+=---...|...  |+   +    .++|-||.|+|.+
T Consensus       280 RKFKCtECgKAFKfKHHLKEHlRI--HS---G----EKPfeCpnCkKRF  319 (1007)
T KOG3623|consen  280 RKFKCTECGKAFKFKHHLKEHLRI--HS---G----EKPFECPNCKKRF  319 (1007)
T ss_pred             ccccccccchhhhhHHHHHhhhee--ec---C----CCCcCCccccccc
Confidence            478999999999887777777654  54   3    3899999999865

>smart00531 TFIIE Transcription initiation factor IIE

Probab=81.27  E-value=1  Score=37.14  Aligned_cols=36  Identities=22%  Similarity=0.542  Sum_probs=24.4

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ...|.|..||..+.-. +|..+.    +  ..      -.|+||.||..
T Consensus        97 ~~~Y~Cp~C~~~y~~~-ea~~~~----d--~~------~~f~Cp~Cg~~  132 (147)
T smart00531       97 NAYYKCPNCQSKYTFL-EANQLL----D--MD------GTFTCPRCGEE  132 (147)
T ss_pred             CcEEECcCCCCEeeHH-HHHHhc----C--CC------CcEECCCCCCE
Confidence            4579999999998844 433321    1  11      23999999985

>PHA00616 hypothetical protein

Probab=80.72  E-value=0.87  Score=31.15  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=22.0

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCC
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      .++|..||+.|+...+...|..+ .|.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~-~hg   26 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS-VHK   26 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH-hcC
Confidence            37999999999999999999855 443

>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional

Probab=80.43  E-value=0.83  Score=36.43  Aligned_cols=28  Identities=21%  Similarity=0.458  Sum_probs=19.6

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ..+++|.+||..+.-..                     ..+.||.||+.
T Consensus        68 p~~~~C~~Cg~~~~~~~---------------------~~~~CP~Cgs~   95 (113)
T PRK12380         68 PAQAWCWDCSQVVEIHQ---------------------HDAQCPHCHGE   95 (113)
T ss_pred             CcEEEcccCCCEEecCC---------------------cCccCcCCCCC
Confidence            46789999996543321                     23579999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	3e-24
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	1e-23
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	2e-22
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	7e-22
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	2e-21
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	3e-16
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	4e-15
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	9e-14
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	8e-09
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	2e-12
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	3e-08
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	1e-11
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	2e-09
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	2e-04
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-04

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 84

 Score = 91.1 bits (226), Expect = 3e-24
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 99  DMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158
           D    +  E  +P  ++E++ +L +MGF      +A   + NA VE A+NW++ H +DPD
Sbjct: 14  DGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73

Query: 159 IDEMPMVPVSG 169
           ID     P SG
Sbjct: 74  IDAPISGPSSG 84

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 88.8 bits (220), Expect = 1e-23
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG 169
              +D+ ++ +L  MGFP+    +A++Y+GN+  EAA+NWV+ H +DPD     ++P S 
Sbjct: 5   SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSS 64

Query: 170 GGGASKSS 177
           G G+S  S
Sbjct: 65  GPGSSGPS 72

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Length = 64

 Score = 86.0 bits (213), Expect = 2e-22
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG 169
               +   L+ L  MGFP  RA +AL  +GN  +EAA++W++EHE+DPD+DE    P SG
Sbjct: 5   SSGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLSGPSSG 64

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 64

 Score = 84.5 bits (209), Expect = 7e-22
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG 169
                  LL+ L AMGFPV  A +AL  +G    E A+ W+ +H NDP +D+    P SG
Sbjct: 5   SSGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGPSSG 64

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 83

 Score = 83.7 bits (207), Expect = 2e-21
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 87  KATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAA 146
            ++ D+ E        +  +E  +  VD+  L++L  MGFP  RAT+AL  +   +V  A
Sbjct: 4   GSSGDAVELFKKA--NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHM-SVPQA 60

Query: 147 VNWVVEHENDPDIDEMPMVPVSG 169
           + W++EH  DP ID     P SG
Sbjct: 61  MEWLIEHAEDPTIDTPLSGPSSG 83

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 69.7 bits (171), Expect = 3e-16
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG 169
               ++ +  + +MGF   +A +AL  + N ++E AV+W+  H +D D +     P SG
Sbjct: 6   SGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDLDAEAAMSGPSSG 63

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Length = 64

 Score = 66.5 bits (162), Expect = 4e-15
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 101 SGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157
           SG   ++          L  L +MGFP ARA +AL  +G  +V+ A +W+  H    
Sbjct: 6   SGRNRQQRPGTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPS 62

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 69.2 bits (168), Expect = 9e-14
 Identities = 32/101 (31%), Positives = 54/101 (53%)

Query: 82  SLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNA 141
            L         EE  D+      P+E   P +D+ ++ +L  MGFP+    +A++Y+GN+
Sbjct: 620 QLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNS 679

Query: 142 NVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEE 182
             EAA+NWV+ H +DPD     ++P S G G++ ++  P  
Sbjct: 680 GAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPP 720

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 54.1 bits (129), Expect = 8e-09
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 72  DKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGFPVARA 131
           +  +EAA    +        +   I    SG            ++ +  + +MGF   +A
Sbjct: 678 NSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQA 737

Query: 132 TRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQELR 191
            +AL  + N ++E AV+W+  H +D D +    +        S S   P   K++    +
Sbjct: 738 LKALRATNN-SLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGK 796

Query: 192 YGIF 195
           Y +F
Sbjct: 797 YQLF 800

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Length = 126

 Score = 61.1 bits (147), Expect = 2e-12
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVP 166
           ++D+  + +L  MGFP+    +A++++GN   E A NW++ H  +PD  E   +P
Sbjct: 1   DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMP 55

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Length = 126

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 103 SQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEM 162
                 ++ +  +E++  + +MGF   +A +AL  + N N+E A++W+  H    +  + 
Sbjct: 67  VFGASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNN-NLERALDWIFSHPEFEEDSDF 125

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 97  DVDMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156
           D+D   S        ++D+  +  L + GF    A +AL  SG  ++E A +WV  +   
Sbjct: 16  DIDAPISHQT----SDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGP 70

Query: 157 PD 158
             
Sbjct: 71  SS 72

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 1   MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSES 36
                +KC  C       +E   HAE T H +F ++
Sbjct: 176 THKAQIKCNTCQMTFVGEREVARHAESTGHVDFGQN 211

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Length = 118

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
           +++ ++ +  MG+      RA+  +G  N+E  ++++  H    +  
Sbjct: 8   ERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKG 53

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 23/197 (11%), Positives = 56/197 (28%), Gaps = 63/197 (31%)

Query: 67  HTDFVDKTSEAAKPISLEVPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGF 126
           H DF  +T E       +     +  E+A   +      ++M +  + KE +  +     
Sbjct: 6   HMDF--ETGE----HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 127 PVARATR---ALHYSGNANVEAAV--------NWVVE-------------------HE-- 154
            V+   R    L       V+  V         +++                     +  
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 155 -NDPDI----------------------DEMPMVPVSGGGGASKSSLTPEEIKLKAQELR 191
            ND  +                           V + G  G+ K+ +  +     + +++
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCLSYKVQ 177

Query: 192 YGIFYAVYFFSDGYCNC 208
             + + +++ +   CN 
Sbjct: 178 CKMDFKIFWLNLKNCNS 194

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Length = 73

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 101 SGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154
           +   P+        +E +++L AMGF   +   AL  + + ++  AV  ++   
Sbjct: 16  AAVLPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQS 68

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 92  SEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV 151
             E   +     Q   +     +KE ++ L+A+GFP +   +A       N   A N+++
Sbjct: 303 EGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLL 361

Query: 152 EHENDPD 158
               D +
Sbjct: 362 SQNFDDE 368

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.87
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	99.79
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	99.77
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	99.73
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	99.68
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	99.67
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	99.67
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	99.6
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	99.57
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	99.47
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	99.46
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	99.43
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	99.43
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	99.37
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	99.37
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	99.33
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	99.32
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	99.32
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	99.28
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	99.27
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	99.27
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	99.21
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	99.17
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	99.17
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	99.1
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	99.01
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	98.99
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	98.99
2dna_A	67	Unnamed protein product; ubiquitin associated doma	98.96
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	98.94
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	98.74
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	98.7
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	98.59
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	98.57
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	98.4
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	98.38
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	98.29
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	98.22
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	98.13
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	98.11
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	97.91
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	97.87
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	97.82
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	97.8
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	97.71
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	97.44
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	97.39
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	97.3
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	97.23
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	97.17
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	97.14
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	97.11
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	96.99
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	96.79
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	96.76
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	96.5
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	96.45
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.35
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.32
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.32
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	96.32
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.24
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	96.19
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.18
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	96.1
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	96.1
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.04
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	95.98
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	95.96
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	95.94
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	95.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	95.72
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	95.7
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	95.69
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	95.53
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	95.51
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	95.39
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.34
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.27
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.26
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.21
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.13
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.13
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.13
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.1
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	95.07
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.05
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.05
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.05
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.03
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	95.03
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.01
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.01
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	95.0
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	94.99
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.99
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.98
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	94.98
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	94.98
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	94.98
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.98
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.96
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	94.94
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.92
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	94.92
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.91
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.88
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.88
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.87
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	94.86
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.83
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.82
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.81
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.8
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	94.77
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	94.76
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.75
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	94.73
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	94.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	94.72
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.72
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	94.71
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	94.7
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.67
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.65
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.65
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	94.65
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	94.62
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.57
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.54
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.52
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	94.49
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.44
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	94.41
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	94.33
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	94.3
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.3
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	94.2
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.07
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.02
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	93.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	93.83
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	93.79
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	93.63
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	93.62
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	93.59
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	92.92
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	92.83
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	92.8
1q02_A	52	Sequestosome 1; helical bundle, protein binding; N	92.62
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	92.39
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	92.2
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.2
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.15
2dhy_A	67	CUE domain-containing protein 1; structural genomi	92.13
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	92.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.97
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.84
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	91.75
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	91.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	91.7
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	91.66
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	91.65
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.6
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	91.5
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.49
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.49
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	91.33
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.28
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	91.17
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	91.07
1paa_A	30	Yeast transcription factor ADR1; transcription reg	90.98
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	90.79
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.54
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.42
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	90.36
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	90.23
1ard_A	29	Yeast transcription factor ADR1; transcription reg	90.14
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	90.11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	90.02
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.02
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.02
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	89.89
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	89.87
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	89.81
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	89.65
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	89.62
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	89.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	89.49
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	89.29
1xb2_B	291	EF-TS, elongation factor TS, mitochondrial, EF-TSM	89.14
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	89.11
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	88.96
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	88.89
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	88.88
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.68
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	88.46
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	88.45
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	88.02
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	87.98
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.96
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	87.72
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	87.51
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	87.49
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	87.4
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	87.37
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	87.23
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.07
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	86.85
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.83
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.79
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.75
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	86.62
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	86.61
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.61
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.6
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	86.58
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.54
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	86.48
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.47
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	86.46
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.39
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.25
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.21
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	85.99
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	85.96
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.96
3a43_A	139	HYPD, hydrogenase nickel incorporation protein HYP	85.93
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.84
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.82
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	85.75
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	85.72
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.72
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	85.61
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	85.7
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	85.42
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	85.61
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	85.37
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.27
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.25
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	85.15
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.13
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.85
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	84.78
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.55
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	84.52
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	84.43
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	84.09
1aip_C	196	EF-TS, elongation factor TS; nucleotide exchange,	83.8
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	83.79
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	83.65
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	83.62
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	83.43
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.4
1ixs_A	62	Holliday junction DNA helicase RUVA; heterodimeric	83.33
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	82.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	82.47
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	82.18
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	81.89
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	81.53
2kna_A	104	Baculoviral IAP repeat-containing protein 4; XIAP,	81.53
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	81.42
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	80.83
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	80.74

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.87  E-value=4e-23  Score=207.98  Aligned_cols=155  Identities=25%  Similarity=0.389  Sum_probs=119.9

Q ss_pred             hhhhhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc---Cccc---cCCcccccCCC----CCCCCCc
Q 027011           38 EAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDM----SGSQPEE  107 (229)
Q Consensus        38 E~vl~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~---P~Kl---v~~~e~lDls~----g~~~gEe  107 (229)
                      |.+..|.|+.|+++       ..++|+.+|.++|++|+|+.+||.+..   |.|+   |..|+.|||+.    |.+++|+
T Consensus       559 E~Le~y~C~~C~~k-------~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~  631 (854)
T 3ihp_A          559 EQVDDFWSTALQAK-------SVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEE  631 (854)
T ss_dssp             EEEEEEEETTTTEE-------EEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCC
T ss_pred             eEeeeeeccccCCc-------ceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCce
Confidence            33434999999987       789999999999999999999999953   8898   56788999997    6678887


Q ss_pred             ccCC--------------CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 027011          108 MVEP--------------EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGA  173 (229)
Q Consensus       108 ~l~~--------------~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~~s~s~~  173 (229)
                      .++.              .+|+++|++|++|||++++++|||++|||.++|.||+||++||+|+|+++|+..+..+....
T Consensus       632 ~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s  711 (854)
T 3ihp_A          632 ELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGS  711 (854)
T ss_dssp             BCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-------
T ss_pred             ecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccc
Confidence            6532              35889999999999999999999999999999999999999999999999997654211100


Q ss_pred             ----------------CCCCCCHHHHHHHHHHHHHHHHHhhc
Q 027011          174 ----------------SKSSLTPEEIKLKAQELRYGIFYAVY  199 (229)
Q Consensus       174 ----------------~~~~LTeEEkkaK~~ELr~ki~~~~~  199 (229)
                                      .....+.+.+++.|++--..+.++.+
T Consensus       712 ~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraid  753 (854)
T 3ihp_A          712 TSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVD  753 (854)
T ss_dssp             -------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHH
Confidence                            01234556666666655555555554

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=99.79  E-value=2.1e-19  Score=135.78  Aligned_cols=67  Identities=36%  Similarity=0.601  Sum_probs=60.0

Q ss_pred             CCCCCCcccC------------CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011          101 SGSQPEEMVE------------PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV  167 (229)
Q Consensus       101 g~~~gEe~l~------------~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~  167 (229)
                      |+|+||++++            +.++++.|++|++|||++++|++||++|+|.|++.|++|||+|++|+++|+|+..|+
T Consensus         4 g~q~gEe~lp~~~~~~~~~~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~p~~~~~   82 (84)
T 1vek_A            4 GSSGGEELLPDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISGPS   82 (84)
T ss_dssp             CCCCCCCSCCSSCSSSCCCSCCCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSCSSSCC
T ss_pred             CCCCCcccCcCCCCcccccccCCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccCCCCCC
Confidence            6678887763            235899999999999999999999999988899999999999999999999997665

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.77  E-value=2.5e-19  Score=129.10  Aligned_cols=56  Identities=39%  Similarity=0.627  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV  167 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~  167 (229)
                      .+|++.|++|++|||++++|++||++|||+++|+||+||++|++||++|+|+..|.
T Consensus         7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~~~   62 (64)
T 2crn_A            7 GSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGPS   62 (64)
T ss_dssp             CCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCCCS
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCCCC
Confidence            35777899999999999999999999999999999999999999999999987665

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=6.7e-18  Score=124.70  Aligned_cols=59  Identities=37%  Similarity=0.738  Sum_probs=54.9

Q ss_pred             CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 027011          110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS  168 (229)
Q Consensus       110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~~  168 (229)
                      .+.++++.|++|++|||++++|++||++|+|.++|+|++||++|++|+++|+|+..|+.
T Consensus         5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d~p~~~~~~   63 (74)
T 2dag_A            5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGS   63 (74)
T ss_dssp             CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSSSCSCCSSC
T ss_pred             CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccccccCCCCC
Confidence            35689999999999999999999999999987899999999999999999999987764

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=99.68  E-value=3.4e-17  Score=117.71  Aligned_cols=54  Identities=44%  Similarity=0.788  Sum_probs=50.4

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPM  164 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~  164 (229)
                      ..++++.|++|++|||++++|++||++|||.|+|.|++||++|++|+++|+|+.
T Consensus         6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d~pl~   59 (64)
T 1whc_A            6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLS   59 (64)
T ss_dssp             CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCCSS
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccccccC
Confidence            357888999999999999999999999976699999999999999999999986

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=4.3e-17  Score=116.51  Aligned_cols=56  Identities=27%  Similarity=0.475  Sum_probs=52.6

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV  167 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~  167 (229)
                      ..++++.|++|++|||++++|++||++++| ++++|++||++|++|+++++|+..|+
T Consensus         6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~d~d~d~p~~~p~   61 (63)
T 2dak_A            6 SGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDLDAEAAMSGPS   61 (63)
T ss_dssp             CCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHHSCCSSSCCCCSC
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCcccccCCCCCC
Confidence            357999999999999999999999999998 89999999999999999999998775

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=9.4e-17  Score=121.09  Aligned_cols=56  Identities=41%  Similarity=0.697  Sum_probs=52.3

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV  167 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~  167 (229)
                      +.++++.|++|++|||++++|++||++++| |+|.|++||++|++|+++|+|+..|+
T Consensus        26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~-nve~A~ewL~~~~~d~d~d~pl~~~~   81 (83)
T 2dai_A           26 ERVDEAALRQLTEMGFPENRATKALQLNHM-SVPQAMEWLIEHAEDPTIDTPLSGPS   81 (83)
T ss_dssp             SSCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHGGGCSTTCCCCCCSS
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccccCCCCCC
Confidence            568999999999999999999999999966 99999999999999999999987665

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=99.60  E-value=2.2e-15  Score=120.07  Aligned_cols=88  Identities=30%  Similarity=0.565  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCC--------CC-CHHH
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKS--------SL-TPEE  182 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~~s~s~~~~~--------~L-TeEE  182 (229)
                      ++|+..|++|++|||++.+|++||++|||++++.||+||++|++|+++++|+..+....+.....        .+ -.++
T Consensus         1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~   80 (126)
T 2lbc_A            1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEE   80 (126)
T ss_dssp             CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHH
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHH
Confidence            47899999999999999999999999999999999999999999999998876553211111011        22 3456


Q ss_pred             HHHHHHHH---HHHHHHhhc
Q 027011          183 IKLKAQEL---RYGIFYAVY  199 (229)
Q Consensus       183 kkaK~~EL---r~ki~~~~~  199 (229)
                      +-++|.++   +.++++|..
T Consensus        81 ~v~~L~~MGF~~~~a~~AL~  100 (126)
T 2lbc_A           81 IVAIITSMGFQRNQAIQALR  100 (126)
T ss_dssp             HHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHH
Confidence            66666665   455555544

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.57  E-value=1.5e-15  Score=109.22  Aligned_cols=46  Identities=35%  Similarity=0.603  Sum_probs=44.0

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD  158 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~d  158 (229)
                      ++++.|++|++|||++++|++||++|+|+|+|.|++||++|++|||
T Consensus        18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d   63 (64)
T 2cpw_A           18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS   63 (64)
T ss_dssp             SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence            6788999999999999999999999998899999999999999986

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.47  E-value=9.9e-14  Score=99.48  Aligned_cols=54  Identities=33%  Similarity=0.493  Sum_probs=48.1

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCC
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVP  166 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p  166 (229)
                      .++++.|++|++|||++++|++||++++| |++.|++||++|.++.....|+..+
T Consensus         7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~~~~~~~~p~~~~   60 (63)
T 1wji_A            7 GVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQKPVMGPPSGP   60 (63)
T ss_dssp             SSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHSSCCCCCSSCCCS
T ss_pred             CCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccCCCCCCC
Confidence            47899999999999999999999999988 9999999999999887776665433

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.46  E-value=3.1e-14  Score=101.98  Aligned_cols=42  Identities=19%  Similarity=0.488  Sum_probs=39.3

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      .++.|++|++|||++++|+|||++||| |+|+|++|||+|+|-
T Consensus        19 e~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D~   60 (63)
T 1wgn_A           19 ERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSGP   60 (63)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence            467899999999999999999999998 999999999999874

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=99.43  E-value=1.6e-13  Score=100.92  Aligned_cols=48  Identities=27%  Similarity=0.548  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Q 027011          110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD  158 (229)
Q Consensus       110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~d  158 (229)
                      .+.++++.|++|++|||++.+|++||++|+| |+++|++||++|++|+.
T Consensus        25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~~d~~   72 (73)
T 1wiv_A           25 TSDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGPSS   72 (73)
T ss_dssp             SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSCCSSC
T ss_pred             CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCCCCC
Confidence            4568999999999999999999999999998 99999999999999864

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.4e-13  Score=92.82  Aligned_cols=42  Identities=29%  Similarity=0.488  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      +.++++.|++|++|||++++|++||+++|  |+|.|++||++|+
T Consensus         6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~h~   47 (47)
T 2ekk_A            6 SGVNQQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLTHP   47 (47)
T ss_dssp             CSSCHHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHcCC
Confidence            57899999999999999999999999995  7999999999995

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=99.37  E-value=1.4e-13  Score=93.32  Aligned_cols=44  Identities=27%  Similarity=0.482  Sum_probs=41.1

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD  158 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~d  158 (229)
                      +++.|++|++|||++.+|++||.++|+ |++.|++|||+|++|++
T Consensus         4 e~eaI~rL~~mGF~~~~a~~Al~a~~~-n~e~A~~~Lf~~~~d~~   47 (47)
T 1dv0_A            4 EKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDDE   47 (47)
T ss_dssp             CHHHHTTTTTTTCCHHHHHHHHTTTTS-CHHHHHHHTTSCCCCCC
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCcCCCC
Confidence            678899999999999999999999985 99999999999999864

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=99.37  E-value=4.3e-13  Score=88.58  Aligned_cols=41  Identities=29%  Similarity=0.428  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      ++++.|++|++|||++++|++||++++| |++.|++||++|.
T Consensus         3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~~~   43 (43)
T 2g3q_A            3 PKSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLDSA   43 (43)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHcCC
Confidence            4678999999999999999999999987 9999999999983

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=99.33  E-value=3.7e-12  Score=101.39  Aligned_cols=48  Identities=31%  Similarity=0.617  Sum_probs=44.6

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC-CCCCC
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN-DPDID  160 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d-D~did  160 (229)
                      .+++..|++|++|||++++|++||++||| |++.|++||++|++ |+++|
T Consensus        76 ~~~e~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~e~L~~~~~~d~~~d  124 (126)
T 2lbc_A           76 QPPEEIVAIITSMGFQRNQAIQALRATNN-NLERALDWIFSHPEFEEDSD  124 (126)
T ss_dssp             CCCHHHHHHHHHHTSCHHHHHHHHHHHTS-CHHHHHHHHHTCCSSCCCCC
T ss_pred             CcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCccCCC
Confidence            37999999999999999999999999988 99999999999999 87654

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.32  E-value=3.6e-12  Score=96.43  Aligned_cols=49  Identities=31%  Similarity=0.431  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCC
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE  161 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~  161 (229)
                      .+|++.|++|++|||++++|++||+.++ .++|+|++||++|++|+|...
T Consensus        19 ~~n~~~I~qL~~MGF~~~~a~~AL~~~n-~n~e~A~ewL~~h~~D~D~~~   67 (85)
T 2dkl_A           19 WIMSRLIKQLTDMGFPREPAEEALKSNN-MNLDQAMSALLEKKVDVDKRG   67 (85)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHTTSCCSSCCC
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHHcC-CCHHHHHHHHHHCcCCccccc
Confidence            3678999999999999999999996655 599999999999999987443

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=99.32  E-value=3e-12  Score=96.64  Aligned_cols=46  Identities=28%  Similarity=0.349  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP  157 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~  157 (229)
                      ..++++.|++|++|||++.+|++||+.++| ++++|++|||+|+++.
T Consensus        26 ~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~~i   71 (83)
T 1veg_A           26 ASPSQESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGGSL   71 (83)
T ss_dssp             CCCCHHHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSSC
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence            446899999999999999999999999998 8999999999998864

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=99.28  E-value=3e-12  Score=87.27  Aligned_cols=41  Identities=29%  Similarity=0.370  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      .+++.|++|++|||++++|++||++++| |+++|++||++|.
T Consensus         7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~gi   47 (49)
T 1ify_A            7 EYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGI   47 (49)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHHCC
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence            3678899999999999999999999998 9999999999973

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=99.27  E-value=3.5e-12  Score=88.93  Aligned_cols=41  Identities=32%  Similarity=0.540  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      +++...+++|++|||++++|++||+.|||++++.||+||..
T Consensus         7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k   47 (54)
T 2cos_A            7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK   47 (54)
T ss_dssp             SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            68899999999999999999999999999999999999975

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=99.27  E-value=1.4e-12  Score=103.98  Aligned_cols=47  Identities=19%  Similarity=0.469  Sum_probs=41.6

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC--CCCCCCC
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE--NDPDIDE  161 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~--dD~did~  161 (229)
                      ++++|++|++||||+++|+|||++||| |++.||+||++|+  +|+++++
T Consensus         8 e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~   56 (118)
T 4ae4_A            8 ERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDP   56 (118)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCCh
Confidence            578999999999999999999999999 9999999999998  3444444

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=99.21  E-value=2.2e-11  Score=83.98  Aligned_cols=41  Identities=27%  Similarity=0.405  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          113 VDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       113 vd~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      ..++.|++|++||| +++++++||.+++| |++.|++||++|+
T Consensus        11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~~~   52 (52)
T 2jy5_A           11 RFQQQLEQLSAMGFLNREANLQALIATGG-DINAAIERLLGSS   52 (52)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhCc
Confidence            35789999999999 99999999999998 9999999999984

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=99.17  E-value=4.5e-11  Score=88.13  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      ....++.|++|++|||++++|++||+.++| |++.|++||++|++.
T Consensus        26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~~p   70 (73)
T 1vg5_A           26 VAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSGP   70 (73)
T ss_dssp             SCCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSCS
T ss_pred             CcccHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence            345788999999999999999999999998 999999999999654

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=99.17  E-value=3.7e-11  Score=83.09  Aligned_cols=39  Identities=26%  Similarity=0.488  Sum_probs=36.7

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          115 KELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       115 ~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      ++.|++|++||| +++++++||++++| |++.|++||++|+
T Consensus        12 ~~~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~~   51 (53)
T 2knz_A           12 QQQLEQLNSMGFINREANLQALIATGG-DINAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHcC
Confidence            457999999999 99999999999998 9999999999985

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=99.10  E-value=1e-10  Score=75.23  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=33.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 027011          115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~  151 (229)
                      ++.|++|++|||++++|++||..++| |++.|++||+
T Consensus         5 ~~~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~   40 (40)
T 1z96_A            5 NSKIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence            56899999999999999999999987 9999999995

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=99.01  E-value=4.7e-10  Score=75.65  Aligned_cols=39  Identities=31%  Similarity=0.471  Sum_probs=35.2

Q ss_pred             CHHHHHHHHhCCCC-HHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       114 d~~~l~qL~eMGF~-~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      -++.|++|++|||+ +.++++||.+++| |++.|++||++|
T Consensus         7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~~   46 (46)
T 2bwb_A            7 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG   46 (46)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence            36789999999995 7788999999998 999999999986

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.99  E-value=6.4e-10  Score=77.38  Aligned_cols=42  Identities=29%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             CHHHHHHHHhCCCCH-HHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          114 DKELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       114 d~~~l~qL~eMGF~~-~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      .+..|++|++|||+. .++++||.+++| |++.|++|||+|++.
T Consensus         9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~~~   51 (54)
T 2dah_A            9 FQVQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSSGP   51 (54)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence            477899999999955 557999999998 999999999999764

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.99  E-value=5.8e-10  Score=82.43  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=39.4

Q ss_pred             CCHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011          113 VDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP  157 (229)
Q Consensus       113 vd~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~  157 (229)
                      .-+..|++|++||| ++.++++||.+++| |++.|++|||+|++.+
T Consensus        28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~~~~~   72 (74)
T 1vej_A           28 RYQQELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGASGPS   72 (74)
T ss_dssp             TSHHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCCCCC
Confidence            35788999999999 68999999999988 9999999999997654

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.96  E-value=6.1e-10  Score=80.98  Aligned_cols=43  Identities=21%  Similarity=0.190  Sum_probs=37.4

Q ss_pred             CHHHHHHHHhCCCCH-HHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011          114 DKELLKELEAMGFPV-ARATRALHYSGNANVEAAVNWVVEHENDP  157 (229)
Q Consensus       114 d~~~l~qL~eMGF~~-~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~  157 (229)
                      -+..|++|.+|||.. .+.++||++++| |+++|++||++|+++.
T Consensus        19 y~~ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~~~   62 (67)
T 2dna_A           19 FSKEMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQGFS   62 (67)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCSSS
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence            356899999999954 555999999998 9999999999998874

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=98.94  E-value=9.7e-10  Score=77.64  Aligned_cols=40  Identities=30%  Similarity=0.482  Sum_probs=36.2

Q ss_pred             CHHHHHHHHhCCCC-HHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       114 d~~~l~qL~eMGF~-~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      -+..|++|++|||+ +.++++||.+++| |++.|++||++|+
T Consensus        17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~~   57 (58)
T 1wr1_B           17 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNGD   57 (58)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence            35689999999995 8888999999998 9999999999985

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=98.74  E-value=8.9e-09  Score=81.91  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=37.2

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      +++..+.+|++|||++.+|++||+.|+| ++++|++||+..
T Consensus        75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~n-d~erAlewL~~~  114 (118)
T 4ae4_A           75 EFLQLMSKFKEMGFELKDIKEVLLLHNN-DQDNALEDLMAR  114 (118)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHHh
Confidence            3667899999999999999999999998 999999999975

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=98.70  E-value=6.3e-09  Score=96.49  Aligned_cols=47  Identities=26%  Similarity=0.309  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011          110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP  157 (229)
Q Consensus       110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~  157 (229)
                      ....+++.|++|++|||++++|++||++++| |+++|++||++|++|.
T Consensus       164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~gip~~  210 (368)
T 1oqy_A          164 TGSEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGIPGS  210 (368)
T ss_dssp             CTTTHHHHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTSSTTC
T ss_pred             CCcchHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence            3456889999999999999999999999999 9999999999998875

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=98.59  E-value=7.1e-08  Score=75.92  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011          113 VDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHEN  155 (229)
Q Consensus       113 vd~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d  155 (229)
                      ..++.|++|.+||| ++.++++||..++| |+++|++||++++.
T Consensus        65 ~~~~qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~~~~  107 (108)
T 2cwb_A           65 QWQPQLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFAGGA  107 (108)
T ss_dssp             TTHHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcCC
Confidence            35789999999999 56899999999998 99999999999853

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=98.57  E-value=1.1e-07  Score=65.89  Aligned_cols=39  Identities=28%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      .-++.+++|++|||+++.|.+||..++| |++.|.+.|.+
T Consensus        10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLle   48 (52)
T 2ooa_A           10 NVDAKIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILRE   48 (52)
T ss_dssp             -CHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence            3448999999999999999999999988 99999999976

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.40  E-value=5.3e-07  Score=62.65  Aligned_cols=43  Identities=23%  Similarity=0.263  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN  155 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d  155 (229)
                      +.-+..+++|++|||+++.+++||..++| |+|.|.+.|.+...
T Consensus         7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~   49 (53)
T 2d9s_A            7 GQLSSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG   49 (53)
T ss_dssp             SCSHHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence            34567799999999999999999999988 99999999987643

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=98.38  E-value=2e-07  Score=65.21  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011          112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN  155 (229)
Q Consensus       112 ~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d  155 (229)
                      .+.++.+++|++|||+++.+++||..++| |++.|.|-|++-..
T Consensus         5 ~p~e~~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~   47 (56)
T 2juj_A            5 PQLSSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVS   47 (56)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCC
T ss_pred             CCChHHHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHc
Confidence            34577899999999999999999999988 99999999998644

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=98.29  E-value=1.3e-07  Score=87.59  Aligned_cols=44  Identities=27%  Similarity=0.450  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP  157 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~  157 (229)
                      .+++.|++|++|||++..|++||+++++ |++.|++|||+|++|.
T Consensus       324 ee~eaI~rL~~mGF~~~~a~~al~a~~~-n~e~A~~~L~~~~~d~  367 (368)
T 1oqy_A          324 QEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDD  367 (368)
T ss_dssp             TTHHHHHHHHHHTCCSHHHHHHTSSSSS-CSSHHHHHHHHHHCCC
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhhCcCcC
Confidence            4889999999999999999999999986 9999999999998874

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=98.22  E-value=1.3e-06  Score=61.02  Aligned_cols=45  Identities=20%  Similarity=0.206  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          111 PEVDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      .+.++..|++|.+||| ++.+-.+||+.+|+ |+++||++|+...+.
T Consensus         6 ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~~   51 (54)
T 2cp8_A            6 SGQTAALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSGP   51 (54)
T ss_dssp             CTTHHHHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSSS
T ss_pred             HHhhHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence            3467789999999999 99999999999987 999999999987543

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=98.13  E-value=4.3e-06  Score=56.45  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      ++.+..|++|||+++.+++||..++| |++.|.|-|.+.
T Consensus         5 e~~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef   42 (46)
T 2oo9_A            5 SSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREF   42 (46)
T ss_dssp             HHHHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHh
Confidence            46789999999999999999999988 999999999875

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=98.11  E-value=3e-06  Score=71.93  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=36.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      ++.|++|++|||++++|+.||...++ ++++|++|||+|
T Consensus       164 eekV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~~  201 (201)
T 3k9o_A          164 TKKIENLCAMGFDRNAVIVALSSKSW-DVETATELLLSN  201 (201)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence            67899999999999999999999988 999999999986

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=97.91  E-value=4.9e-06  Score=84.06  Aligned_cols=46  Identities=28%  Similarity=0.533  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP  157 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~  157 (229)
                      ..++++.+++|.+|||+..+|++||+.++| ++++|++|||+|++|.
T Consensus       717 ~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~-~~eraidwlfs~~d~~  762 (854)
T 3ihp_A          717 DPPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDL  762 (854)
T ss_dssp             --CCHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHhhcC-cHHHHHHhhhcCcccc
Confidence            457999999999999999999999999988 9999999999998874

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=97.82  E-value=2.3e-06  Score=62.65  Aligned_cols=47  Identities=17%  Similarity=0.101  Sum_probs=34.6

Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHhhc
Q 027011          144 EAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQEL---RYGIFYAVY  199 (229)
Q Consensus       144 E~A~~WL~~h~dD~did~pl~~p~~s~s~~~~~~LTeEEkkaK~~EL---r~ki~~~~~  199 (229)
                      |+||+||++|++|||||+|+..+        .... .+++-++|.++   ++++++|..
T Consensus         2 ~~am~wl~~h~dDpd~d~pl~~~--------~~~~-~~~~v~~L~~MGF~~~~a~~AL~   51 (73)
T 1wiv_A            2 SSGSSGLLSHMDDPDIDAPISHQ--------TSDI-DQSSVDTLLSFGFAEDVARKALK   51 (73)
T ss_dssp             CCCCCCCSSCCSCSCSSCCSCCS--------SCSS-CHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             hHHHHHHHHcCCCCCccCCCCCC--------CCCC-CHHHHHHHHHcCCCHHHHHHHHH
Confidence            46899999999999999998652        1122 46677778777   666666654

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.80  E-value=2.8e-05  Score=60.77  Aligned_cols=41  Identities=29%  Similarity=0.372  Sum_probs=37.5

Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          115 KELLKELEAM-GFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       115 ~~~l~qL~eM-GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      ++.|..|++| ||+++.|++||..++| +++.|++.|++...|
T Consensus        40 eekVk~L~EmtG~seeeAr~AL~~~ng-Dl~~AI~~Lleg~~~   81 (104)
T 1wj7_A           40 EEKVKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLEGNPD   81 (104)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHTCSSS
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence            4578999999 9999999999999988 999999999998654

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=97.71  E-value=3.9e-06  Score=77.62  Aligned_cols=51  Identities=10%  Similarity=0.120  Sum_probs=45.0

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc---Cccc---cCCcccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~---P~Kl---v~~~e~lDls~  100 (229)
                      +.|+.|++.       ..++|+.+|.++|++|+|+.+||....   +.|+   |..|..|||+.
T Consensus       339 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~  395 (476)
T 3mhs_A          339 YHCGECNST-------QDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKN  395 (476)
T ss_dssp             CEETTTTEE-------CCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGG
T ss_pred             CcCCccCCc-------ccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechh
Confidence            999999986       789999999999999999999999753   7787   46688899986

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=97.44  E-value=3.1e-05  Score=67.50  Aligned_cols=51  Identities=16%  Similarity=0.161  Sum_probs=43.8

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCc-ccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~-e~lDls~  100 (229)
                      +.|+.|+++       ..++|+..|.++|++|+|+.+||....  +.|+   |..| +.|||+.
T Consensus       227 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~  283 (355)
T 3i3t_A          227 PVCDRCRQK-------TRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD  283 (355)
T ss_dssp             CCCSSSCCC-------CCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGG
T ss_pred             eeCCCCCCc-------cceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchh
Confidence            899999997       789999999999999999999999886  7777   3445 5688875

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=97.39  E-value=1.6e-05  Score=70.93  Aligned_cols=51  Identities=12%  Similarity=0.115  Sum_probs=44.1

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCcc-cccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEE-AIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~e-~lDls~  100 (229)
                      +.|+.|+++       ..|+|+..|.++|++|+|+.+||....  +.|+   |..|. .|||+.
T Consensus       232 ~~C~~C~~~-------~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~  288 (367)
T 2y6e_A          232 WYCPNCKKH-------QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSE  288 (367)
T ss_dssp             EEETTTTEE-------ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGG
T ss_pred             ccCCCCCCC-------ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhh
Confidence            899999986       789999999999999999999999975  6777   45564 688885

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=97.30  E-value=3.5e-05  Score=69.86  Aligned_cols=53  Identities=6%  Similarity=-0.099  Sum_probs=37.8

Q ss_pred             hhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        41 l~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      +.+.|+.|++.       ..++|+..|.++|++|+|+.+||.+..    ..|+   |..|..|||+.
T Consensus       200 i~~~c~~c~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~  259 (415)
T 1vjv_A          200 IEKRSDLTGAN-------SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVAD  259 (415)
T ss_dssp             ---------CC-------CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGG
T ss_pred             hhhcccccCCc-------ccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHH
Confidence            35799999987       679999999999999999999999985    4676   45678899885

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=97.23  E-value=4.2e-05  Score=68.60  Aligned_cols=53  Identities=8%  Similarity=-0.066  Sum_probs=45.4

Q ss_pred             hhccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        41 l~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      +.+.|+.|++.       ..+.|+..|.++|++|+|+.+||....    ..|+   |..|..|||+.
T Consensus       208 l~~~c~~c~~~-------~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~  267 (404)
T 2ayn_A          208 ITKQSPTLQRN-------ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYE  267 (404)
T ss_dssp             CCCEETTTTEE-------CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGG
T ss_pred             eeecchhhCCc-------cceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhH
Confidence            35789999986       678999999999999999999999985    5777   45688899986

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=97.17  E-value=4.5e-05  Score=69.50  Aligned_cols=51  Identities=16%  Similarity=0.154  Sum_probs=43.5

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCc-ccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~-e~lDls~  100 (229)
                      +.|+.|++.       ..|+|+..|.++|++|+|+.+||....  ..|+   |..| +.|||+.
T Consensus       269 ~~C~~C~~~-------~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~  325 (396)
T 2gfo_A          269 FYCSHCRAR-------RDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQ  325 (396)
T ss_dssp             EEETTTTEE-------ECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGG
T ss_pred             cccCCcccc-------cceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccc
Confidence            899999986       679999999999999999999999886  5676   4455 5688875

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=97.14  E-value=0.00054  Score=60.50  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=35.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      ++.|++|++|||+++.|+.||...|+ +++.|++.||++
T Consensus       216 ~~~v~~l~~mgf~~~~~~~al~~~nW-d~~~A~e~L~~~  253 (253)
T 3e46_A          216 TKKIENLCAAGFDRNAVIVALSSKSW-DVETATELLLSN  253 (253)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence            57899999999999999999999988 999999999974

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=97.11  E-value=6.3e-05  Score=65.38  Aligned_cols=51  Identities=14%  Similarity=0.108  Sum_probs=43.3

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc--Cccc---cCCc-ccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~--P~Kl---v~~~-e~lDls~  100 (229)
                      +.|+.|+++       ..+.|+..|.++|++|+|+.+||....  ..|+   |..| +.|||+.
T Consensus       217 ~~C~~C~~~-------~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~  273 (348)
T 3nhe_A          217 PTCCRCRGR-------KRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE  273 (348)
T ss_dssp             CEETTTTEE-------CCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGG
T ss_pred             eECCCCCCc-------ccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhh
Confidence            799999986       789999999999999999999998876  6776   3445 5688875

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.99  E-value=0.00096  Score=43.40  Aligned_cols=43  Identities=16%  Similarity=0.261  Sum_probs=35.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..|++.|......+.|..+ .|..       ..+|+|+.||+.+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~-~H~~-------~k~~~C~~C~k~F   51 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQ-VHTS-------ERPHKCQVWVSGP   51 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH-TSCC-------CCCCCSSSSCCSS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHH-hcCC-------CCCccCCCCCCCC
Confidence            35679999999999999999999875 5653       3579999999964

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=96.79  E-value=0.0004  Score=47.95  Aligned_cols=41  Identities=24%  Similarity=0.446  Sum_probs=34.9

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      .+.|+|++||+.|......+.|...  |+.       ..+|.|+.||+.+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~--Ht~-------ekp~~C~~C~k~F   42 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRA--HLG-------YRPRSCPECGKCF   42 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH--HHT-------CCCEECTTTCCEE
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHH--hCC-------CcCeECCCCCCCc
Confidence            4689999999999999999999754  642       3689999999964

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=96.76  E-value=0.00022  Score=63.69  Aligned_cols=50  Identities=8%  Similarity=-0.051  Sum_probs=39.8

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      +.|+.|++        ..|.|+..|.++|++|+|+.+||....    ..|+   |..|+.|||+.
T Consensus       172 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~  228 (353)
T 1nb8_A          172 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE  228 (353)
T ss_dssp             EECGGGCE--------ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGG
T ss_pred             ccCCcCcc--------EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhh
Confidence            78999976        468999999999999999999999874    6677   46678899875

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=96.50  E-value=0.00052  Score=64.59  Aligned_cols=50  Identities=8%  Similarity=-0.051  Sum_probs=42.6

Q ss_pred             ccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        43 l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      +.|+.|++        ..|.|+..|.++|++|+|+.+||....    ..|+   |..|..|||+.
T Consensus       341 ~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~  397 (522)
T 2f1z_A          341 YDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE  397 (522)
T ss_dssp             BCCGGGCS--------BCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGG
T ss_pred             eecCcCCc--------cceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchh
Confidence            78999986        478999999999999999999999874    5676   46678899875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.45  E-value=0.0017  Score=40.94  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=33.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK   50 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~   50 (229)
                      ....++|..|++.|......+.|...  |..       ..+|.|+.|||
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C~k   48 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLS--HSG-------EKPYSSGPSSG   48 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGG--SCS-------CCCCCSCCCCC
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHh--cCC-------CCCccCCCCCC
Confidence            35679999999999999999999643  652       35799999986

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.35  E-value=0.0015  Score=42.07  Aligned_cols=39  Identities=21%  Similarity=0.492  Sum_probs=32.6

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      .++|..||+.|......+.|...  |..       ..+|.|+.||+.+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f   39 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT--HTD-------VRPYHCTYCNFSF   39 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--TSS-------CCCEECSSSSCEE
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh--cCC-------CCCccCCCCCchh
Confidence            47899999999999999999865  543       3579999999964

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.32  E-value=0.0018  Score=42.16  Aligned_cols=39  Identities=21%  Similarity=0.453  Sum_probs=32.8

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      .++|..||+.|......+.|...  |..       ..+|.|+.||+.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f   40 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS--HTN-------EKPYPCGLCNRAF   40 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT--TTS-------SCSEECTTTCCEE
T ss_pred             cCcCCCCccccCCHHHHHHHHHH--hCC-------CCCccCCCCCCcc
Confidence            58999999999999999999754  642       2579999999964

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.32  E-value=0.0009  Score=43.10  Aligned_cols=41  Identities=24%  Similarity=0.427  Sum_probs=32.0

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ..+++|..||+.|......+.|...  |..       ..++.|+.|++.+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f   42 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRT--HTG-------EKPYKCEFCEYAA   42 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHH--HHC-------CCCEECSSSSCEE
T ss_pred             CCCccCCCCcchhCChHHHHHHHHH--cCC-------CCCcCCCCCcchh
Confidence            4578999999999999999999775  432       3579999999864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=96.32  E-value=0.00079  Score=44.77  Aligned_cols=43  Identities=21%  Similarity=0.354  Sum_probs=34.6

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...++|..||+.|......+.|... -|..      ...+|.|+.||+.+
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~-~H~~------~~~~~~C~~C~k~f   50 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVT-SHKR------NVKVYPCPFCFKEF   50 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHH-HSSS------SCCCEECTTTCCEE
T ss_pred             CcceECCCCcchhCCHHHHHHHHHH-HcCC------CCcCeECCCCCCcc
Confidence            4679999999999999999999876 3421      13579999999964

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.24  E-value=0.0017  Score=44.25  Aligned_cols=42  Identities=21%  Similarity=0.494  Sum_probs=34.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..|++.|......+.|...  |..       ..+|.|+.|++.+
T Consensus        11 ~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~-------~~~~~C~~C~~~f   52 (72)
T 1x6e_A           11 GEKPYGCVECGKAFSRSSILVQHQRV--HTG-------EKPYKCLECGKAF   52 (72)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHG--GGC-------SCCEECSSSCCEE
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHh--cCC-------CCCeECCCCCccc
Confidence            35679999999999999999999764  542       3579999999964

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=96.19  E-value=0.0074  Score=42.30  Aligned_cols=45  Identities=24%  Similarity=0.361  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHhCCCC---HHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          110 EPEVDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       110 ~~~vd~~~l~qL~eMGF~---~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      .+.+.++.+++|.+| ||   ...++.+|.+.+| +++.|++-|++..++
T Consensus         5 ~~~~~ee~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~~   52 (59)
T 1wgl_A            5 SSGCSEEDLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGEE   52 (59)
T ss_dssp             SSSSCHHHHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSCC
T ss_pred             CCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcCC
Confidence            456789999999999 75   5888999999877 999999999997554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.18  E-value=0.0017  Score=44.26  Aligned_cols=42  Identities=24%  Similarity=0.498  Sum_probs=34.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..|++.|......+.|...  |..       ..+|.|+.||+.+
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~-------~~~~~C~~C~k~f   55 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTV--HTG-------EKPYRCNICGAQF   55 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHH--HCC-------CCSEECTTTCCEE
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHH--cCC-------CCCEECCCCCchh
Confidence            35679999999999999999999765  532       2569999999964

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.10  E-value=0.004  Score=38.42  Aligned_cols=39  Identities=15%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCG   49 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg   49 (229)
                      ....++|..||+.|......+.|...  |..       ..++.|+.||
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~-------~~~~~C~~cg   45 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVRS--HDG-------SVGKSGPSSG   45 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHHH--HSC-------CCCCCCCCCC
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHHH--ccC-------CCCCCCcCCC
Confidence            35679999999999999999999765  653       3579999997

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.10  E-value=0.0025  Score=43.81  Aligned_cols=44  Identities=18%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..|++.|......+.|... -|..      ...+|+|+.|++.+
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~-~h~~------~~~~~~C~~C~~~f   55 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQ-KHTE------NVAKFHCPHCDTVI   55 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHH-HSSS------SCSSEECSSSSCEE
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHH-hcCC------CCCccCCCCCCCcc
Confidence            35679999999999999999999875 3432      13579999999964

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.04  E-value=0.0021  Score=43.36  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..|++.|......+.|...  |..       ..+|.|+.|++.+
T Consensus         6 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~~~f   47 (70)
T 1x5w_A            6 SGHPEKCSECSYSCSSKAALRIHERI--HCT-------DRPFKCNYCSFDT   47 (70)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGG--GCC-------SCSEECSSSSCEE
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHH--cCC-------CCCEeCCCCCCcc
Confidence            35689999999999999999999854  642       2569999999964

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=95.98  E-value=0.01  Score=42.52  Aligned_cols=42  Identities=26%  Similarity=0.502  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          111 PEVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       111 ~~vd~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      ..++.+.|.+|.+ -|.+...|++||..+++ |++.|++||...
T Consensus         6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~G-Di~~Ai~~Lr~k   48 (64)
T 2cp9_A            6 SGSSKELLMKLRRKTGYSFVNCKKALETCGG-DLKQAEIWLHKE   48 (64)
T ss_dssp             SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            3466788989886 59999999999999988 999999999765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.96  E-value=0.0047  Score=44.84  Aligned_cols=42  Identities=21%  Similarity=0.414  Sum_probs=34.1

Q ss_pred             cceeeccccccccC-CHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLR-SVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~-~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...++|..||+.|. .....+.|...  |..      ...+|.|+.|++.+
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~~~--h~~------~~~~~~C~~C~k~F   64 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHMEV--CQK------LQDALKCQHCRKQF   64 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHHHH--HHH------HHHHHSCSSSCCCC
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHHHH--HcC------CCCCEECCCCCCcc
Confidence            46799999999999 99999999855  421      14689999999974

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.94  E-value=0.0028  Score=46.54  Aligned_cols=41  Identities=20%  Similarity=0.341  Sum_probs=34.2

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...++|..||+.|........|...  |..       ..+|.|+.|++.+
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~--H~~-------~k~~~C~~C~k~F   66 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRL--LHA-------AQVFPCKYCPATF   66 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHT--TSC-------SSSEECTTSSCEE
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhh--ccC-------CCccCCCCCCCEe
Confidence            4568999999999999999999754  642       2679999999964

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.75  E-value=0.0055  Score=42.00  Aligned_cols=45  Identities=29%  Similarity=0.505  Sum_probs=34.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..||+.|......+.|...  |..=    ....+|.|+.||+.+
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~----~~~~~~~C~~C~k~f   48 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQRK--HAET----VAALRFPCEFCGKRF   48 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHH--HHHH----TTTCCEECTTTCCEE
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHHH--hhcc----CCCcccCCCCCCchh
Confidence            45789999999999999999999755  3210    014679999999963

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.72  E-value=0.017  Score=42.18  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...++|..||+.|......+.|...+||.  .+    ...+.|+.|++.+
T Consensus        17 ~~~~~C~~C~k~f~~~~~L~~H~~~~~h~--~~----~~~~~C~~C~~~f   60 (115)
T 2dmi_A           17 ASKFRCKDCSAAYDTLVELTVHMNETGHY--RD----DNHETDNNNPKRW   60 (115)
T ss_dssp             CCSEEBSSSSCEESSHHHHHHHHHHTCCC--BC----SCCCCCCCCCSCC
T ss_pred             CCCEECCccCchhcCHHHHHHHHHHhCcc--cc----CCCccCCCCCccc
Confidence            46799999999999999999999877773  22    1234588888763

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.70  E-value=0.0066  Score=41.79  Aligned_cols=45  Identities=29%  Similarity=0.569  Sum_probs=34.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC-CCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS-NFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~-nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..|++.|......+.|... -|. ++.+     .+|+|+.|++.+
T Consensus        12 ~~k~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~-----~~~~C~~C~~~f   57 (86)
T 1x6h_A           12 GEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVP-----AAFVCSKCGKTF   57 (86)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHH-TTCSSCCC-----CCEECSSSCCEE
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHHH-hcCCcCCC-----cceECCCCCChh
Confidence            34679999999999999999999876 332 2211     369999999963

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.69  E-value=0.0045  Score=42.46  Aligned_cols=42  Identities=24%  Similarity=0.547  Sum_probs=34.4

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR   53 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~   53 (229)
                      ...++|..|++.|......+.|...  |..       ..+|+|+.|++.+.
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~   57 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRT--HTG-------EKPYKCDECGKAFI   57 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTT--TCC-------SCSEECSSSCCEES
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH--cCC-------CcCeeCCCCCCccC
Confidence            4679999999999999999999753  643       25799999999643

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.53  E-value=0.0074  Score=45.65  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=36.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..||+.|........|... -|+...+    ..+|+|+.||+.+
T Consensus        15 gekpy~C~~Cgk~F~~~~~L~~H~r~-~H~~~~~----ekpf~C~~Cgk~F   60 (102)
T 2ghf_A           15 VEGGYECKYCTFQTPDLNMFTFHVDS-EHPNVVL----NSSYVCVECNFLT   60 (102)
T ss_dssp             CCSSEECSSCSCEESCHHHHHHHHHH-HCSSCCC----SCCEEETTTTEEE
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHh-hCCCCCC----CCCcCCCCCCccc
Confidence            45679999999999999999999865 4655322    2579999999964

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.51  E-value=0.012  Score=43.13  Aligned_cols=42  Identities=29%  Similarity=0.548  Sum_probs=34.6

Q ss_pred             ceeecccccccc-CCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011            4 VSLKCGDCGALL-RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK   55 (229)
Q Consensus         4 ~slkC~~Cg~~L-~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~   55 (229)
                      ..++|+.||+.| ......+.|...  |   .+     .+|+|+.||+.+...
T Consensus        33 ~~~~C~~C~k~F~~~~~~L~~H~~~--h---~~-----k~~~C~~Cgk~F~~~   75 (96)
T 2ctd_A           33 GSVSCPTCQAVGRKTIEGLKKHMEN--C---KQ-----EMFTCHHCGKQLRSL   75 (96)
T ss_dssp             SCEECTTTCSCEESSHHHHHHHHHH--H---CC-----CCCCCSSSCCCCSSH
T ss_pred             CCcCCCCCCCCcccCHHHHHHHHHH--H---CC-----CCeECCCCCCeeCCH
Confidence            468999999999 899999999876  5   22     579999999975443

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.39  E-value=0.016  Score=35.52  Aligned_cols=38  Identities=18%  Similarity=0.252  Sum_probs=31.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2eq4_A            9 GEKLYNCKECGKSFSRAPCLLKHERL--HSG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCBTTTTBCCSCHHHHHHHHHH--CCS-------SSCCCCCCC
T ss_pred             CCCCeECCCCCCccCchHHHHHHHHh--cCC-------CCCCCCCCC
Confidence            35679999999999999999999754  653       357999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.34  E-value=0.014  Score=35.94  Aligned_cols=38  Identities=13%  Similarity=0.221  Sum_probs=31.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQLISHQRT--HAG-------EKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH--HTT-------SCCSCSSCC
T ss_pred             CCcCcCCCCCCcccCcHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            35679999999999999999999654  652       257999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=95.27  E-value=0.015  Score=35.89  Aligned_cols=38  Identities=13%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|+|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQRV--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHHH--HSS-------CCCSSCCCC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            35679999999999999999999864  643       257999887

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.26  E-value=0.012  Score=36.28  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2ytq_A            9 GEKPYGCSECGKAFSSKSYLIIHMR--THSG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSCBCSSSCCBCSCHHHHHHHHT--TTCC-------SCSSCCCCC
T ss_pred             CCCCcCCCccChhhCChHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3567999999999999999999964  3753       257899887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.21  E-value=0.02  Score=35.22  Aligned_cols=38  Identities=18%  Similarity=0.270  Sum_probs=30.9

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |+.       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2enc_A            9 GEKPFKCEECGKGFYTNSQCYSHQRS--HSG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH--SCC-------SSCCSSCCC
T ss_pred             CCCCcCCCCCCCcCCChHHHHHHHHH--hCC-------CCCCCCCCC
Confidence            35679999999999999999999654  643       257899887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.13  E-value=0.018  Score=35.38  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|+|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2eov_A            9 GEKPYKCSDCGKSFTWKSRLRIHQKC--HTG-------ERHSGPSSG   46 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHH--HSC-------CSSCCSCCC
T ss_pred             CCCCccCCccChhhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence            34679999999999999999999654  642       256899887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.13  E-value=0.02  Score=35.17  Aligned_cols=38  Identities=13%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~c   46 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNLIKHQKI--HTK-------QKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHH--TSC-------CCCSSCSCC
T ss_pred             CCcCeECCCCChhhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            35679999999999999999999754  652       257899877

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.13  E-value=0.017  Score=35.54  Aligned_cols=38  Identities=16%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~c   46 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHLTNHWRI--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHHH--HSS-------SSCSSCCCC
T ss_pred             CCCCEeCCcCCCccCCHHHHHHHHHH--HCC-------CCCCCCCCC
Confidence            35679999999999999999999764  542       257899887

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.10  E-value=0.018  Score=35.40  Aligned_cols=38  Identities=13%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~c   46 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQ--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH--TTSS-------CCSCCSCCC
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3567999999999999999999975  4653       257899887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.08  E-value=0.016  Score=35.67  Aligned_cols=38  Identities=18%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|+|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSLSVHQRI--HSG-------KKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGG--GSS-------CCCSCSSCC
T ss_pred             CCCCeeCCCcCCccCCHHHHHHHHHH--hcC-------CCCCCCCCC
Confidence            35679999999999999999999643  643       257899887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=95.07  E-value=0.016  Score=35.74  Aligned_cols=38  Identities=13%  Similarity=0.125  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C   46 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRLLVHQR--MHTR-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHG--GGCC-------SSCCSCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence            3567999999999999999999954  3653       357899887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.05  E-value=0.019  Score=35.22  Aligned_cols=38  Identities=16%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHLIQHQRI--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH--HSC-------CCTTSSSCC
T ss_pred             CCCCeeCCCCChhhCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence            35679999999999999999999654  642       257999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.05  E-value=0.018  Score=35.37  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~c   46 (46)
T 2eq0_A            9 GEKPYKCHECGKVFRRNSHLARHQL--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHT--TTCC-------CCCSCCSCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence            3567999999999999999999953  4752       257899887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.05  E-value=0.018  Score=35.39  Aligned_cols=38  Identities=18%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|+|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2ytd_A            9 GEKPYKCSECGKAFHRHTHLNEHRRI--HTG-------YRPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH--HTC-------CCSSCSSCC
T ss_pred             CCcCeECCCCCCeeCChHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            35679999999999999999999654  653       257899887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.05  E-value=0.014  Score=35.80  Aligned_cols=38  Identities=18%  Similarity=0.356  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~~~~~C~~C   46 (46)
T 2eoe_A            9 GEKPYKCNECGKVFTQNSHLANHQR--IHTG-------VKPSGPSSG   46 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHG--GGSC-------CCSCSSCCC
T ss_pred             CCCCeECCCcChhhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence            3567999999999999999999974  3642       357999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=95.03  E-value=0.015  Score=35.84  Aligned_cols=38  Identities=16%  Similarity=0.370  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQKI--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHTG--GGC-------CCCCSSSCC
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence            35679999999999999999999643  642       257899887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.03  E-value=0.016  Score=35.67  Aligned_cols=39  Identities=13%  Similarity=0.144  Sum_probs=31.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|... .|+.       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~-~H~~-------~k~~~C~~C   47 (47)
T 2epx_A            9 GKKPYECIECGKAFIQNTSLIRHWRY-YHTG-------EKPSGPSSG   47 (47)
T ss_dssp             CCCSBCCSSSCCCBSSHHHHHHHHTT-TTTT-------SCSSSCCCC
T ss_pred             CCCCEECCccCchhCChHHHHHHhHh-hcCC-------CCCCCCCCC
Confidence            35679999999999999999999763 4642       257899887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.01  E-value=0.013  Score=36.04  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=30.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2em7_A            9 GEKPYKCEECGKGFICRRDLYTHHM--VHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHGG--GGTT-------CCCSSTTCC
T ss_pred             CCcCccCCCccchhCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3567999999999999999999954  3642       357899887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.01  E-value=0.014  Score=35.88  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=30.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2ytn_A            9 GKKPYKCNECGKVFTQNSHLARHRG--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHGG--GTSC-------CCCCSCCCC
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHhh--hcCC-------CCCCCCCCC
Confidence            3567999999999999999999954  3652       257899887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.00  E-value=0.02  Score=35.13  Aligned_cols=38  Identities=16%  Similarity=0.192  Sum_probs=30.9

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2epw_A            9 GEKPCKCTECGKAFCWKSQLIMHQRT--HVD-------DKHSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHH--CCS-------CCCSCCCCC
T ss_pred             CCCCeeCCCCCCccCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence            35679999999999999999999754  643       256899887

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.99  E-value=0.012  Score=41.42  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=14.2

Q ss_pred             ceeeccccccccCCHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ..++|..|++.|......+.|..
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~   29 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMR   29 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGG
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            45566666666666666666654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.99  E-value=0.016  Score=35.56  Aligned_cols=38  Identities=16%  Similarity=0.201  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|..  .|..       ..+|+|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2en8_A            9 GEKSHTCDECGKNFCYISALRIHQR--VHMG-------EKCSGPSSG   46 (46)
T ss_dssp             CCSSEECTTTCCEESSHHHHHHHHT--TTCC-------SCSSCCSCC
T ss_pred             CCCCeECCCcCcccCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3567999999999999999999963  4653       257999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.98  E-value=0.017  Score=35.49  Aligned_cols=38  Identities=13%  Similarity=0.167  Sum_probs=30.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2eop_A            9 GEKPHECRECGKSFSFNSQLIVHQR--IHTG-------ENPSGPSSG   46 (46)
T ss_dssp             CCCSCBCTTTCCBCSSHHHHHHHHT--TTTT-------SCCSCCCCC
T ss_pred             CCCCeeCCCCCchhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence            3567999999999999999999964  3652       257899887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.98  E-value=0.02  Score=34.84  Aligned_cols=38  Identities=13%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|...  |..       ..+|.|+.|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   44 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSKSYLLVHQQT--HAE-------EKPSGPSSG   44 (44)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHHH--HTS-------SCSCSCCCC
T ss_pred             CCcCccCCCCCcccCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence            35679999999999999999999754  642       256899887

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.98  E-value=0.0099  Score=41.74  Aligned_cols=40  Identities=28%  Similarity=0.568  Sum_probs=26.5

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ...++|..|++.|......+.|...  |..       ..+|.|+.|++.
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~   44 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKLS--HSG-------EKPYSCPVCGLR   44 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHHH--SCS-------SCSEECSSSCCE
T ss_pred             CCCeECCCCCCccCChHHHHHHHHh--cCC-------CCCCcCCCCCCc
Confidence            4567888888888888888888654  432       134666666664

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=94.98  E-value=0.011  Score=44.24  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR   53 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~   53 (229)
                      ...++|+.||+.|......+.|...  |    +     .+|.|+.||+.+.
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~--H----~-----~~~~C~~C~k~f~  111 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRY--T----E-----HTKVCPVCKKEFT  111 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHH--T----C-----CCCBCTTTCCBCS
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHH--C----C-----CCCCCCCCCcccC
Confidence            3578999999999999999999865  6    2     4699999999753

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.98  E-value=0.018  Score=35.42  Aligned_cols=38  Identities=13%  Similarity=0.222  Sum_probs=31.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2en6_A            9 GEKPYGCNECGKTFSQKSILSAHQRT--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             SSCCEEETTTTEEESSHHHHHHHHHH--HSS-------CCCSSSCCC
T ss_pred             CCcCeECCCCCcccCchHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            35679999999999999999999765  642       257899887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.96  E-value=0.016  Score=35.73  Aligned_cols=38  Identities=16%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~c   46 (46)
T 2emf_A            9 GGKHFECTECGKAFTRKSTLSMHQKI--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSSCCEESCHHHHHHHGGG--TSC-------SSCSCCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence            35679999999999999999999753  642       257899887

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.94  E-value=0.012  Score=39.30  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=31.7

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC-CCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA-TCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~-~Cg~~~   52 (229)
                      ...++|..||+.|. ....+.|...+|          ..+|+|+ .||+.+
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~~~~----------~~p~~C~~~C~k~f   47 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQYQCP----------RLPVACPNQCGVGT   47 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHHHCS----------SSEEECTTCCSCCE
T ss_pred             CCCeeccccCCccC-HHHHHHHHHHcC----------CcCccCCcccCccc
Confidence            45799999999999 999999975422          2579999 999963

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.92  E-value=0.025  Score=34.77  Aligned_cols=38  Identities=16%  Similarity=0.239  Sum_probs=30.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSMV--HTA-------EKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHHH--TTC-------CCSSSCCCC
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            34679999999999999999999654  642       257899887

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=94.92  E-value=0.011  Score=39.61  Aligned_cols=39  Identities=21%  Similarity=0.416  Sum_probs=29.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ....++|..||+.|......+    + -|..       ..+|+|+.||+.+
T Consensus        11 ~~k~~~C~~C~k~F~~~~~l~----~-~H~~-------~k~~~C~~C~k~f   49 (62)
T 1vd4_A           11 NRASFKCPVCSSTFTDLEANQ----L-FDPM-------TGTFRCTFCHTEV   49 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHH----H-EETT-------TTEEBCSSSCCBC
T ss_pred             CCCCccCCCCCchhccHHHhH----h-hcCC-------CCCEECCCCCCcc
Confidence            356799999999998765544    4 4542       3579999999964

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.91  E-value=0.02  Score=35.16  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|........|...  |..       ..+|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVSLIEHQVL--HMG-------QKNSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHH--HSC-------CSCCCTTCC
T ss_pred             CCCCEEccccChhhCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence            34679999999999999999999754  542       257899887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.88  E-value=0.019  Score=35.23  Aligned_cols=38  Identities=16%  Similarity=0.305  Sum_probs=30.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C   46 (46)
T 2ytr_A            9 GEKPYKCNECGKAFSQTSKLARHQR--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             SCCTTCCTTTCCCCSSHHHHHHHHT--TTTT-------CSCCCSCCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence            3567899999999999999999954  4652       257999887

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.88  E-value=0.016  Score=35.69  Aligned_cols=38  Identities=13%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|........|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~c   46 (46)
T 2emh_A            9 GERPYICTVCGKAFTDRSNLIKHQKI--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHH--HHC-------SSCSSSCCC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence            35679999999999999999999754  532       257899887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=94.87  E-value=0.017  Score=35.63  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSALNVHHKL--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTHHHHHHHH--HSC-------CSSCSCCCC
T ss_pred             CCCCcccCccCcccCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            35679999999999999999999764  652       257899887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=94.86  E-value=0.017  Score=35.42  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|+|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2el4_A            9 GVKPYGCSQCAKTFSLKSQLIVHQR--SHTG-------VKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHGG--GSSS-------CCCSCCTTC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3567999999999999999999964  3652       257899887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.83  E-value=0.02  Score=35.35  Aligned_cols=38  Identities=16%  Similarity=0.199  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHLIEHLKR--HFR-------EKSSGPSSG   46 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHH--HHS-------TTSSCCSCC
T ss_pred             CCCCEEccccCcccCCHHHHHHHHHH--HcC-------CCCCCCCCC
Confidence            35679999999999999999999654  542       357899887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.82  E-value=0.018  Score=35.37  Aligned_cols=38  Identities=18%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNSYLSRHQR--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHT--TTCC-------CCCCSCCCC
T ss_pred             CCCCeECCCCCchhCChHHHHHHHh--hcCC-------CCCCCCCCC
Confidence            3567999999999999999999964  3652       257899887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.81  E-value=0.019  Score=35.28  Aligned_cols=38  Identities=16%  Similarity=0.144  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..|++.|......+.|..  .|..       ..+|+|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2ep0_A            9 GEKPYKCDVCHKSFRYGSSLTVHQR--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             TCCSEECSSSCCEESSHHHHHHHHT--TTSS-------SCCCSCCCC
T ss_pred             CCCCeeCcccCcccCChHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3567999999999999999999954  4753       257899887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.80  E-value=0.017  Score=35.58  Aligned_cols=38  Identities=16%  Similarity=0.214  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQRV--HTG-------EKLSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHH--HHC-------CCCCCSCCC
T ss_pred             CCCCeECcccCchhCCHHHHHHHHHH--HcC-------CCCCCCCCC
Confidence            35679999999999999999999765  542       256899887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.77  E-value=0.022  Score=34.95  Aligned_cols=38  Identities=16%  Similarity=0.182  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|........|..  .|..       ..+|+|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C   46 (46)
T 2eme_A            9 GEKPYVCDYCGKAFGLSAELVRHQR--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHG--GGCC-------CSCCSSCCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence            3567999999999999999999974  4642       257899887

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.76  E-value=0.015  Score=42.51  Aligned_cols=48  Identities=21%  Similarity=0.356  Sum_probs=33.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccc
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET   58 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~   58 (229)
                      ....++|..|++.|......+.|...  |..       ..++.|+.|++.+.+....
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~~~~l   51 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRK--HTG-------EKPFECPKCGKCYFRKENL   51 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHH--HSS-------CCSCBCTTTCCBCSSHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHh--CCC-------CCCeECCCCCchhcCHHHH
Confidence            34568888899888888888888764  432       2467888888765444333

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.75  E-value=0.018  Score=35.39  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2ysp_A            9 GEKPYKCEKCGKGYNSKFNLDMHQKV--HTG-------ERPSGPSSG   46 (46)
T ss_dssp             SCCSEEETTTTEEESCHHHHHHHHTT--SCS-------CCSSCCSCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHh--hCC-------CCCCCCCCC
Confidence            35679999999999999999999643  653       256899887

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=94.73  E-value=0.0075  Score=42.36  Aligned_cols=44  Identities=16%  Similarity=0.400  Sum_probs=34.6

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcc
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKT   56 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~   56 (229)
                      ..++|..||+.|......+.|...  |..       ..+|.|+.||+.+.+..
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~k~f~~~~   45 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRT--HTG-------EKPFACDICGRKFARSD   45 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH--HHC-------CCCEECTTTCCEESSHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHH--cCC-------CCCccCCCCCCccCCHH
Confidence            468999999999999999999764  532       25799999999754433

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.73  E-value=0.023  Score=41.17  Aligned_cols=41  Identities=29%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS   54 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~   54 (229)
                      ...++|..|++.|......+.|...  |.         .+|.|+.|++.+..
T Consensus        14 ~~~~~C~~C~~~f~~~~~l~~H~~~--H~---------~~~~C~~C~~~f~~   54 (107)
T 1wjp_A           14 KEVYQCRLCNAKLSSLLEQGSHERL--CR---------NAAVCPYCSLRFFS   54 (107)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHH--HH---------HSBCCTTTCCCBSS
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH--CC---------CCccCCCCCCccCC
Confidence            4568999999999999999999766  51         46889999887543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.72  E-value=0.024  Score=39.69  Aligned_cols=46  Identities=20%  Similarity=0.412  Sum_probs=35.4

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK   55 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~   55 (229)
                      ...++|..|++.|......+.|...  |..=     ...+|.|+.|++.+.+.
T Consensus        33 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~-----~~~~~~C~~C~~~f~~~   78 (95)
T 2yt9_A           33 EKPYSCPVCGLRFKRKDRMSYHVRS--HDGS-----VGKPYICQSCGKGFSRP   78 (95)
T ss_dssp             SCSEECSSSCCEESCHHHHHHHHHH--HCCC-----CCSSBCCSSSCCCBSSH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH--hcCC-----CCCceECCCccchhCCH
Confidence            4579999999999999999999865  3321     12579999999975433

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.72  E-value=0.019  Score=35.34  Aligned_cols=38  Identities=13%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|........|...  |..       ..+|+|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSLTTHQVI--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHHHH--HHC-------CSCCSCCCC
T ss_pred             CCcCeECCCCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            35679999999999999999999754  532       257899887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.71  E-value=0.021  Score=35.14  Aligned_cols=38  Identities=16%  Similarity=0.239  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2epz_A            9 GEKPFDCIDCGKAFSDHIGLNQHRR--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCTTTCCCBSSHHHHHHHHT--TTTT-------CCCCSSCCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3467999999999999999999964  4642       257999887

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=94.70  E-value=0.022  Score=40.80  Aligned_cols=43  Identities=21%  Similarity=0.397  Sum_probs=29.9

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS   54 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~   54 (229)
                      ...++|..|++.|......+.|...  |..       ..+|.|+.|++.+.+
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~   57 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERT--HTD-------ERPYTCDICHKAFRR   57 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHH--HCC-------SCCCBCSSSCCBCSC
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH--cCC-------CCCcCCCCccchhCC
Confidence            3467888888888888888888764  332       245777777776433

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=94.67  E-value=0.02  Score=35.16  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|+.||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSLRLHQNV--HVG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHGGG--GSS-------SSCSCSSCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHH--cCC-------CCCcCCCCC
Confidence            35679999999999999999999643  643       256899887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.65  E-value=0.018  Score=35.62  Aligned_cols=38  Identities=18%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2ytm_A            9 GEKPYKCMECGKAFGDNSSCTQHQRL--HTG-------QRPSGPSSG   46 (46)
T ss_dssp             SCCSSSBTTTTBCCSSHHHHHHHHHH--HHS-------CCCCCCCCC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            35679999999999999999999765  542       257899887

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.65  E-value=0.019  Score=35.45  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDCGKGYNRRLNLDMHQR--VHMG-------EKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHGG--GGGS-------CCCCCSCCC
T ss_pred             CCCCeeCcccCchhCCHHHHHHHHH--hcCC-------CCCCCCCCC
Confidence            3567999999999999999999965  3642       257899887

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=94.65  E-value=0.017  Score=41.38  Aligned_cols=47  Identities=21%  Similarity=0.425  Sum_probs=36.1

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccc
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET   58 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~   58 (229)
                      ...++|..|++.|......+.|...  |..       ..+|+|+.|++.+.+....
T Consensus        43 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~~~~L   89 (106)
T 2ee8_A           43 ERPYTCDICHKAFRRQDHLRDHRYI--HSK-------EKPFKCQECGKGFCQSRTL   89 (106)
T ss_dssp             SCCCBCSSSCCBCSCHHHHHHHGGG--SCC-------CCTTSCSSSCCCCSSHHHH
T ss_pred             CCCcCCCCccchhCCHHHHHHHHHH--hCC-------CCCeECCCcCCcccCHHHH
Confidence            3568999999999999999999643  542       2569999999976444333

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.62  E-value=0.01  Score=41.70  Aligned_cols=44  Identities=20%  Similarity=0.412  Sum_probs=35.2

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK   55 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~   55 (229)
                      ...++|..|++.|......+.|...  |..       ..+|+|+.|++.+.+.
T Consensus        34 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~~   77 (96)
T 2dmd_A           34 VKPYKCKTCDYAAADSSSLNKHLRI--HSD-------ERPFKCQICPYASRNS   77 (96)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHH--SCC-------CCCEECSSSSCEESSH
T ss_pred             CCCEeCCCCCCccCCHHHHHHHHHH--hCC-------CCCccCCCCCCccCCH
Confidence            3568999999999999999999875  532       2569999999975443

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.57  E-value=0.024  Score=34.96  Aligned_cols=38  Identities=16%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|+|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C   46 (46)
T 2em5_A            9 STKSHQCHECGRGFTLKSHLNQHQR--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHHT--TTSC-------SCCSSCCCC
T ss_pred             CCCCeECCcCCCccCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3467999999999999999999963  3642       257899887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.54  E-value=0.019  Score=35.35  Aligned_cols=38  Identities=16%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C   46 (46)
T 2en1_A            9 GEKPFKCEECGKRFTQNSQLHSHQR--VHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGG--GGSC-------CCCSCCCCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence            3567999999999999999999974  3643       257899887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=94.52  E-value=0.022  Score=34.95  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|+|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~C   46 (46)
T 2em9_A            9 GEKPYNCKECGKSFRWASCLLKHQR--VHSG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHGG--GGTS-------CCCCSTTCC
T ss_pred             CCcCeECCccccccCChHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            3567999999999999999999954  3652       257899887

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=94.49  E-value=0.012  Score=40.75  Aligned_cols=21  Identities=14%  Similarity=0.332  Sum_probs=10.1

Q ss_pred             eeeccccccccCCHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHA   25 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha   25 (229)
                      .++|..||+.|......+.|.
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~   54 (90)
T 1a1h_A           34 PFQCRICMRNFSRSDHLTTHI   54 (90)
T ss_dssp             CEECTTTCCEESCHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHH
Confidence            344444544444444444443

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.44  E-value=0.015  Score=35.74  Aligned_cols=38  Identities=16%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C   46 (46)
T 2yu8_A            9 GEKPYKCNECGKVFTQNSHLARHRRV--HTG-------GKPSGPSSG   46 (46)
T ss_dssp             CCSSEECSSSCCEESSSHHHHHHTHH--HHS-------CCCSCSCCC
T ss_pred             CCCCeECCcCCchhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence            45679999999999999999999654  532       257899887

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=94.41  E-value=0.011  Score=40.20  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=10.6

Q ss_pred             eeccccccccCCHHHHHHHHH
Q 027011            6 LKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         6 lkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ++|..||+.|......+.|..
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~   22 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLL   22 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHH
Confidence            445555555555555555543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.33  E-value=0.027  Score=38.21  Aligned_cols=52  Identities=23%  Similarity=0.483  Sum_probs=30.0

Q ss_pred             cceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC--CCCCCCCcccccccc
Q 027011            3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHR   62 (229)
Q Consensus         3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~--Cg~~~~~~~E~~~a~   62 (229)
                      ...++|.-  |++.|......+.|... .|..       ..+|.|+.  |++.+.+......+.
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~-~H~~-------~~~~~C~~~~C~k~f~~~~~L~~H~   60 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKY-QHIH-------QKSFSCPEPACGKSFNFKKHLKEHM   60 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHH-GGGS-------CCCEECSCTTTCCEESSHHHHHHHH
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHH-HhCC-------CCCeECCCCCCcCccCCHHHHHHHH
Confidence            34566664  77777777777777653 3432       23466766  766655544443333

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=94.30  E-value=0.011  Score=46.16  Aligned_cols=41  Identities=22%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...|+|+.||+.|......+.|...  |+.       ..+|.|+.||+.+
T Consensus        20 ek~y~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C~k~F   60 (133)
T 2lt7_A           20 RVYYICIVCKRSYVCLTSLRRHFNI--HSW-------EKKYPCRYCEKVF   60 (133)
T ss_dssp             EEEEEETTTCCEESCHHHHHHHHHH--HHC-------CSCEECSSSSCEE
T ss_pred             CcCeECCCCCCCcCCHHHHHHHHHH--cCC-------CCCeeCCccCeec
Confidence            3567888888888888888888653  532       2457777777754

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.30  E-value=0.036  Score=34.11  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~~   46 (46)
T 2em2_A            9 GEKPFKCKECGKAFRQNIHLASHLRI--HTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH--HCC-------CCSSCSSCC
T ss_pred             CCCCEECCcCCchhCCHHHHHHHHHH--hCC-------CCCCCCCCC
Confidence            35679999999999999999999764  542       256888865

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.20  E-value=0.02  Score=41.40  Aligned_cols=42  Identities=21%  Similarity=0.536  Sum_probs=29.1

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS   54 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~   54 (229)
                      ...++| .|++.|......+.|...  |..       ..+|.|+.|++.+.+
T Consensus         8 ~k~~~C-~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~   49 (110)
T 2csh_A            8 DKLYPC-QCGKSFTHKSQRDRHMSM--HLG-------LRPYGCGVCGKKFKM   49 (110)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHH--HSC-------CCSEECTTTSCEESS
T ss_pred             CCCEec-cCCCccCCHHHHHHHHHH--cCC-------CcCccCCCCCcccCC
Confidence            456888 788888888888888765  332       245778888775433

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.07  E-value=0.034  Score=34.12  Aligned_cols=38  Identities=13%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~~~   46 (46)
T 2ep3_A            9 GEKPYRCAECGKAFTDRSNLFTHQK--IHTG-------EKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHT--TTTT-------SCCCCTTCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence            3567999999999999999999974  3642       257888765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.02  E-value=0.016  Score=35.66  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGECGKSYNQRVHLTQHQR--VHTG-------EKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTTCCEESSSHHHHTTGG--GGSS-------CCSSCSCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCCCC
Confidence            3567999999999999999999963  3642       257899887

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=93.91  E-value=0.021  Score=38.66  Aligned_cols=42  Identities=21%  Similarity=0.498  Sum_probs=33.7

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR   53 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~   53 (229)
                      ...++|..|++.+......+.|...  |..       ..++.|+.||+.+.
T Consensus        27 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~   68 (82)
T 2kmk_A           27 TRPYPCQYCGKRFHQKSDMKKHTFI--HTG-------EKPHKCQVCGKAFS   68 (82)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH--HHT-------CCCEECTTTSCEES
T ss_pred             CCCeeCCcCChhhCCHHHHHHHHHH--hcC-------CCCCcCCCcchhhC
Confidence            3568999999999999999999764  321       35799999999643

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.83  E-value=0.037  Score=40.32  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=27.8

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ..++|..|++.|......+.|... -|..-.     ..++.|+.|++.+
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~-----~~~~~C~~C~~~f   76 (124)
T 2dlq_A           34 KPFECPKCGKCYFRKENLLEHEAR-NCMNRS-----EQVFTCSVCQETF   76 (124)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHH-CCCCSC-----CCCEECSSSCCEE
T ss_pred             CCeECCCCCchhcCHHHHHHHHhh-hhcCCC-----CCCeECCCCCCcc
Confidence            457788888888888888888765 222111     2356777777754

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=93.79  E-value=0.012  Score=45.88  Aligned_cols=43  Identities=19%  Similarity=0.387  Sum_probs=33.0

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS   54 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~   54 (229)
                      ...++|+.||+.|........|...  |+.       ..++.|+.||+.+.+
T Consensus        48 ~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C~k~F~~   90 (133)
T 2lt7_A           48 EKKYPCRYCEKVFPLAEYRTKHEIH--HTG-------ERRYQCLACGKSFIN   90 (133)
T ss_dssp             CSCEECSSSSCEESSHHHHHHHHHH--HHT-------CCCEEESSSCCEESS
T ss_pred             CCCeeCCccCeecccccchhhhccc--cCC-------CccccCCCCCCCcCC
Confidence            4578999999999999999999653  632       357899999986533

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.70  E-value=0.026  Score=34.77  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=29.8

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ...++|..||+.|......+.|...  |..       ..+|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C   46 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWIT--HTR-------EKPSGPSSG   46 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTH--HHH-------CCCCSCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence            4678999999999999999999654  531       357899887

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.63  E-value=0.018  Score=41.70  Aligned_cols=41  Identities=22%  Similarity=0.512  Sum_probs=33.4

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...++|..|++.|......+.|...  |..       ..+|.|+.|++.+
T Consensus        35 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f   75 (110)
T 2csh_A           35 LRPYGCGVCGKKFKMKHHLVGHMKI--HTG-------IKPYECNICAKRF   75 (110)
T ss_dssp             CCSEECTTTSCEESSSHHHHHHHTT--TCC-------CCCEECSSSCCEE
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH--cCC-------CCCeeCCCCcchh
Confidence            3569999999999999999999653  532       2569999999964

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.62  E-value=0.016  Score=41.97  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=33.4

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK   55 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~   55 (229)
                      .++|..|++.|......+.|. +  |..       ..+|.|+.|++.+...
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~-~--H~~-------~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHE-S--KCE-------YKKLTCLECMRTFKSS   82 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHH-H--HCS-------TGGGEEGGGTEECSSH
T ss_pred             CccCCCCCCccCCHHHHHHHH-H--cCC-------CCCccCccccchhCCH
Confidence            589999999999999999997 3  652       3579999999975433

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=93.59  E-value=0.023  Score=38.16  Aligned_cols=41  Identities=17%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             cceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...++|.  .||+.|......+.|...  |..       ..+|.|+.||+.+
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f   59 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIRI--HTG-------QKPFQCRICMRNF   59 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHHH--HHC-------CCCEECTTTCCEE
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHHh--hCC-------CCCeECCCCCchh
Confidence            4679997  699999999999999654  431       3569999999964

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.92  E-value=0.066  Score=37.50  Aligned_cols=49  Identities=18%  Similarity=0.282  Sum_probs=33.1

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchh-hhhhhccCCCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCR   53 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~-E~vl~l~C~~Cg~~~~   53 (229)
                      .+++|..|++.|........|... -|..=.... -.-..+.|+.||+.+.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~-~H~~~~~~~~~~c~~~~C~~C~k~f~   73 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCYWEECPREGKSFK   73 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHH-TTTCCTTCSCCCCCCTTCSSTTCCCS
T ss_pred             CCCcccccccccCCHHHHHHHHHH-hccCCCCCCccceeccCCCCCCcccC
Confidence            346799999999999999999765 465311000 0000189999999753

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=92.83  E-value=0.031  Score=40.53  Aligned_cols=22  Identities=18%  Similarity=0.549  Sum_probs=11.7

Q ss_pred             eeecc--ccccccCCHHHHHHHHH
Q 027011            5 SLKCG--DCGALLRSVQEAQEHAE   26 (229)
Q Consensus         5 slkC~--~Cg~~L~~~~~aq~Ha~   26 (229)
                      .++|.  .||+.|......+.|..
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~   59 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQR   59 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHH
Confidence            45555  45555555555555543

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=92.80  E-value=0.02  Score=49.29  Aligned_cols=38  Identities=29%  Similarity=0.404  Sum_probs=0.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      ++.++.|++|||+++.+++||...|. +++.|++-|++.
T Consensus       178 ~~~v~~~~~mgf~~~~~~~al~~~~~-~~~~~~~~l~~~  215 (216)
T 2pwq_A          178 EVIIKKITEMGFSEDQAKNALIKANW-NETLALNTLLEN  215 (216)
T ss_dssp             ---------------------------------------
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHcCC-chHHHHHHHhcC
Confidence            57899999999999999999999887 899999988753

>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A

Probab=92.62  E-value=0.081  Score=36.42  Aligned_cols=41  Identities=29%  Similarity=0.424  Sum_probs=30.0

Q ss_pred             CCCCCH---HHHHHHHhCCCCHHHHH--HHHHHcCCCCHHHHHHHHH
Q 027011          110 EPEVDK---ELLKELEAMGFPVARAT--RALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       110 ~~~vd~---~~l~qL~eMGF~~~~a~--kAL~~Tgn~~~E~A~~WL~  151 (229)
                      +++.|+   +.|.||++|||+.+-.-  +.|..-++ |+.+|++=|-
T Consensus         3 p~~~D~rl~~al~qMl~MGF~negGWLt~LL~~k~g-DI~~aLD~lq   48 (52)
T 1q02_A            3 PPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNY-DIGAALDTIQ   48 (52)
T ss_dssp             CTTSCHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTT-CHHHHHHHHT
T ss_pred             CCCcChHHHHHHHHHHHcCCCccccHHHHHHHHccC-CHHHHHHHhh
Confidence            445554   46889999999987763  66666544 8999998763

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=92.39  E-value=0.039  Score=43.78  Aligned_cols=22  Identities=18%  Similarity=0.587  Sum_probs=11.7

Q ss_pred             eeeccccccccCCHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      .++|..||+.|......+.|..
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~  126 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQR  126 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHH
Confidence            3555555555555555555543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=92.20  E-value=0.08  Score=37.17  Aligned_cols=12  Identities=17%  Similarity=0.659  Sum_probs=7.1

Q ss_pred             hhccCCCCCCCC
Q 027011           41 LNLVCATCGKPC   52 (229)
Q Consensus        41 l~l~C~~Cg~~~   52 (229)
                      .+|.|+.|++.+
T Consensus        74 ~~~~C~~C~~~f   85 (100)
T 2ebt_A           74 KPFQCGVCNRSF   85 (100)
T ss_dssp             CSCBCSSSCCBC
T ss_pred             CCeECCCCcCcc
Confidence            346666666643

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.20  E-value=0.092  Score=32.16  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=28.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|+.||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2ytp_A            9 GERHYECSECGKAFARKSTLIMHQR--IHTG-------EKPSGPS   44 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHT--TTSC-------CCCCSSC
T ss_pred             CCCCeECCcCCcccCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence            3567999999999999999999964  4653       2467776

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.15  E-value=0.12  Score=31.70  Aligned_cols=36  Identities=14%  Similarity=0.218  Sum_probs=28.2

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~   44 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSSLICHRRS--HTG-------EKPSGPS   44 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHHH--HSS-------SSCCCCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHh--cCC-------CCCCCCC
Confidence            35679999999999999999999654  542       2467775

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.13  E-value=0.17  Score=36.30  Aligned_cols=42  Identities=14%  Similarity=0.294  Sum_probs=35.1

Q ss_pred             CCHHHHHHHHhCCCC---HHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          113 VDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       113 vd~~~l~qL~eMGF~---~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      .-+..+++|.+| ||   +..++++|.++|| +++.|++=|++..++
T Consensus        17 ~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~~   61 (67)
T 2dhy_A           17 EFNQAMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNLE   61 (67)
T ss_dssp             CSHHHHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCC
Confidence            356789999999 86   5888999999987 999999999875443

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=92.13  E-value=0.12  Score=32.11  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=21.6

Q ss_pred             CcceeeccccccccCCHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHA   25 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha   25 (229)
                      ..+.++|+.|||.|......+.|.
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            357899999999999999999997

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.97  E-value=0.13  Score=31.51  Aligned_cols=37  Identities=19%  Similarity=0.324  Sum_probs=28.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT   47 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~   47 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~   45 (46)
T 2yto_A            9 GEKPYKCSDCGKAFTRKSGLHIHQQS--HTG-------ERHSGPSS   45 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHH--HTC-------CCBTTTBC
T ss_pred             CCCCEECcccCCccCCHhHHHHHHHH--cCC-------CCCCCCCC
Confidence            35679999999999999999999754  642       24677763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.84  E-value=0.14  Score=31.08  Aligned_cols=36  Identities=11%  Similarity=0.248  Sum_probs=28.2

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNLIVHQR--THTG-------EKPSGPS   44 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHH--TSCS-------SSSSCCC
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence            3567999999999999999999964  3653       2467775

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.75  E-value=0.098  Score=31.87  Aligned_cols=36  Identities=17%  Similarity=0.327  Sum_probs=28.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~   44 (45)
T 2epu_A            9 GQKPFECTHCGKSFRAKGNLVTHQR--IHTG-------EKSGPSS   44 (45)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHT--TTSS-------CCCCCSC
T ss_pred             CCcCccCCCCCCccCChHHHHHHHH--HhCC-------CCCCCCC
Confidence            3567999999999999999999964  4753       2467775

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=91.70  E-value=0.061  Score=39.41  Aligned_cols=45  Identities=27%  Similarity=0.542  Sum_probs=31.7

Q ss_pred             CCcceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCc
Q 027011            1 MAGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK   55 (229)
Q Consensus         1 ~~~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~   55 (229)
                      |....++|.  .||+.|......+.|...  |   .     ..++.|+.||+.+.+.
T Consensus         1 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h---~-----~~~~~C~~C~~~f~~~   47 (124)
T 1ubd_C            1 MEPRTIACPHKGCTKMFRDNSAMRKHLHT--H---G-----PRVHVCAECGKAFVES   47 (124)
T ss_dssp             ----CEECCSTTCCCEESSHHHHHHHHGG--G---S-----CCCEECTTTCCEESSH
T ss_pred             CCCCcccCCCCCCcCccCCHHHHHHHHHH--c---C-----CCCeECCCCCchhCCH
Confidence            345678998  899999999999999753  5   1     2468899998865443

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=91.70  E-value=0.07  Score=36.67  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=10.4

Q ss_pred             eeeccc--cccccCCHHHHHHHH
Q 027011            5 SLKCGD--CGALLRSVQEAQEHA   25 (229)
Q Consensus         5 slkC~~--Cg~~L~~~~~aq~Ha   25 (229)
                      .++|..  ||+.|......+.|.
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~   27 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHL   27 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHH
Confidence            344544  555555555555544

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.66  E-value=0.13  Score=31.48  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             Ccceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCC
Q 027011            2 AGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC   48 (229)
Q Consensus         2 ~~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~C   48 (229)
                      ....++|.  .||+.|......+.|..  .|+.       ..+|+|+.|
T Consensus         9 ~~k~~~C~~~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~C   48 (48)
T 2ent_A            9 GEKPFACTWPGCGWRFSRSDELSRHRR--SHSG-------VKPSGPSSG   48 (48)
T ss_dssp             CCCCEECCSSSCCCEESSHHHHHHHHT--TSCC-------CCSCSSCCC
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHH--HhCC-------CCCCCCCCC
Confidence            35679998  89999999999999964  3653       257899887

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.65  E-value=0.16  Score=27.17  Aligned_cols=24  Identities=17%  Similarity=0.335  Sum_probs=20.8

Q ss_pred             ceeeccccccccCCHHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ..++|..||+.|........|...
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            468999999999999999999653

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.60  E-value=0.16  Score=31.04  Aligned_cols=36  Identities=14%  Similarity=0.252  Sum_probs=28.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~   44 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSLTVHQRI--HTG-------EKPSGPS   44 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHHHHHHHH--HTS-------SCCCSCC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHH--cCC-------CCCCCCC
Confidence            35679999999999999999999764  542       2457775

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.50  E-value=0.13  Score=31.23  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=28.2

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2yrj_A            9 GEKPYRCGECGKAFAQKANLTQHQR--IHTG-------EKPSGPS   44 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHT--TTSS-------CCSSCSC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH--HcCC-------CCCCCCC
Confidence            3567999999999999999999964  4652       2467776

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.49  E-value=0.1  Score=31.93  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=27.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2enh_A            9 GEKPYECDVCRKAFSHHASLTQHQR--VHSG-------EKPSGPS   44 (46)
T ss_dssp             CSSSCBCTTTCCBCSSSHHHHHHGG--GSCC-------SCCCCCC
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence            3567999999999999999999964  3653       2467775

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.49  E-value=0.11  Score=31.59  Aligned_cols=37  Identities=14%  Similarity=0.255  Sum_probs=28.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT   47 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~   47 (229)
                      ....++|+.||+.|......+.|..  .|..       ..+|.|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~~   45 (46)
T 2eq3_A            9 GEKPYECNQCGKAFSVRSSLTTHQA--IHTG-------KKPSGPSS   45 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHT--TSCC-------CCCCCSCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHH--HhCC-------CCCCCCCC
Confidence            3567999999999999999999964  4643       24677753

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=91.33  E-value=0.11  Score=39.73  Aligned_cols=52  Identities=19%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchh-hhhhhccCCCCCCCCCCc
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRSK   55 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~-E~vl~l~C~~Cg~~~~~~   55 (229)
                      ..+++|..||+.|......+.|... -|..=.... .....+.|+.|++.+.+.
T Consensus        23 ~~~~~C~~C~~~f~~~~~L~~H~~~-~H~~~~~~~~~~~~~~~C~~C~~~f~~~   75 (155)
T 2rpc_A           23 QLSRPKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCYWEECPREGKSFKAK   75 (155)
T ss_dssp             CCSSSCCCCCCCBSSHHHHHHHHHT-TTSCCTTCSSCCCCBTTCTTSSCCCSSH
T ss_pred             hcccccccCCcccCCHHHHHHHHHh-hcCCCcccCCccccccCCCCcccccCCH
Confidence            4678999999999999999999875 454311100 001126888888865443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.28  E-value=0.14  Score=29.96  Aligned_cols=29  Identities=21%  Similarity=0.276  Sum_probs=23.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|+.||+.|........|..+ .|+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~L~~H~~~-~H~   34 (37)
T 2elm_A            6 SGHLYYCSQCHYSSITKNCLKRHVIQ-KHS   34 (37)
T ss_dssp             SSCEEECSSSSCEEECHHHHHHHHHH-HTC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHH-Hcc
Confidence            35679999999999999999999444 354

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.17  E-value=0.19  Score=30.36  Aligned_cols=36  Identities=8%  Similarity=0.152  Sum_probs=27.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|...  |+.       ..+|.|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~   42 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTLQ--THS-------DKSGPSS   42 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHHH--HTC-------TTCSSSC
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHHh--hCC-------CCCccCC
Confidence            34679999999999999999999754  542       2457775

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=91.07  E-value=0.37  Score=32.52  Aligned_cols=41  Identities=15%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       115 ~~~l~qL~eM--GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      ++.+.+|.+|  .-+...++.+|...+| +++.|++-|++-.++
T Consensus         5 e~~v~~L~EMFP~~~~~~ik~~L~~~~G-d~d~Ai~~LL~~~~~   47 (49)
T 1otr_A            5 ESKLSILMDMFPAISKSKLQVHLLENNN-DLDLTIGLLLKENDD   47 (49)
T ss_dssp             HHHHHHHHHHCSSSCHHHHHHHHHHTTT-CSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Confidence            5678999999  3346899999999988 999999999876443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=90.98  E-value=0.12  Score=28.17  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=21.1

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCC
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      .++|..||+.|........|..+ .|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~-~H~   27 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQK-IHS   27 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTT-TSC
T ss_pred             CcCCcccCcccCChHHHHHHHHH-Hcc
Confidence            57899999999999999999544 353

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=90.79  E-value=0.23  Score=31.12  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=25.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN   32 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n   32 (229)
                      ....|+|..||+.|......+.|..+ .|..
T Consensus         4 ~~kp~~C~~C~k~F~~~~~L~~H~~~-~H~~   33 (48)
T 3iuf_A            4 RDKPYACDICGKRYKNRPGLSYHYAH-SHLA   33 (48)
T ss_dssp             TTSCEECTTTCCEESSHHHHHHHHHH-SSCC
T ss_pred             CCcCEECCCcCcccCCHHHHHHHhhh-hcCC
Confidence            45679999999999999999999875 4764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=90.54  E-value=0.23  Score=28.02  Aligned_cols=26  Identities=15%  Similarity=0.184  Sum_probs=22.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|......+.|...
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~   29 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIRE   29 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHH
Confidence            35679999999999999999999764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.42  E-value=0.24  Score=28.19  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=22.2

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|......+.|...
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHH
Confidence            35678999999999999999999754

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=90.36  E-value=0.17  Score=27.22  Aligned_cols=23  Identities=17%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             ceeeccccccccCCHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ..++|..||+.|......+.|..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999964

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=90.23  E-value=0.013  Score=41.17  Aligned_cols=39  Identities=18%  Similarity=0.441  Sum_probs=32.7

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ...++|..||+.|........|... -|         ..++.|+.|++.
T Consensus        29 ~~~~~C~~C~k~f~~~~~L~~H~~~-h~---------~~~~~c~~C~~~   67 (88)
T 1llm_C           29 EKPFACDICGRKFARSDERKRHRDI-QH---------ILPILEDKVEEL   67 (88)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH-HT---------HHHHHHHHHHHH
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHH-hC---------CCcchHHHHHHH
Confidence            4579999999999999999999876 33         257899999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=90.14  E-value=0.24  Score=26.50  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             eeeccccccccCCHHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      .++|..||+.|........|...
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            57999999999999999999754

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=90.11  E-value=0.18  Score=26.75  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             eeccccccccCCHHHHHHHHH
Q 027011            6 LKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         6 lkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ++|..||+.|........|..
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            789999999999999988864

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=90.02  E-value=0.083  Score=41.83  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=16.4

Q ss_pred             ceeeccccccccCCHHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ..++|..||+.|......+.|...
T Consensus        76 ~~~~C~~C~~~f~~~~~l~~H~~~   99 (190)
T 2i13_A           76 KPYKCPECGKSFSQRANLRAHQRT   99 (190)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCccCcccCCccCCHHHHHHHHHh
Confidence            456777777777777777777654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.02  E-value=0.33  Score=27.76  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|......+.|...
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHH
Confidence            35679999999999999999999653

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.02  E-value=0.26  Score=28.23  Aligned_cols=26  Identities=19%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|......+.|...
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHH
Confidence            35679999999999999999999754

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=89.89  E-value=0.17  Score=27.42  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             ceeeccccccccCCHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ..++|..||+.|......+.|..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999863

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=89.87  E-value=0.083  Score=36.37  Aligned_cols=43  Identities=14%  Similarity=0.366  Sum_probs=32.2

Q ss_pred             cceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCC
Q 027011            3 GVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS   54 (229)
Q Consensus         3 ~~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~   54 (229)
                      ...++|.  .|++.|......+.|...  |..       ..++.|+.|++.+.+
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~   46 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRI--HTG-------QKPFQCRICMRNFSR   46 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHH--HHC-------CCCEECTTTCCEESC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHH--hCC-------CCCccCCCCCcccCC
Confidence            3578998  699999999999999764  421       245888888886433

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.81  E-value=0.014  Score=38.71  Aligned_cols=40  Identities=20%  Similarity=0.419  Sum_probs=27.2

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCCCCcccc
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTET   58 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~~~~~E~   58 (229)
                      ...++|..||+.|......+.                ..++.|+.||+.+.+....
T Consensus        16 ~~~~~C~~C~k~f~~~~~l~~----------------~~~~~C~~C~~~f~~~~~l   55 (73)
T 2ctu_A           16 DRSQKCSKCGIIFIRRSTLSR----------------RKTPMCEKCRKDSCQEAAL   55 (73)
T ss_dssp             CSEEECSSSCCEEECCCCCCC----------------SSSCCCHHHHHTCSCCCSS
T ss_pred             CCCeeCCcccchhCCHHHhCc----------------CCCCCCCCCChhhcCHHHH
Confidence            467999999999765433222                3579999999875444333

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=89.65  E-value=0.23  Score=28.20  Aligned_cols=25  Identities=12%  Similarity=0.279  Sum_probs=21.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ....++|..||+.|........|..
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHH
Confidence            3567999999999999999999964

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=89.62  E-value=0.17  Score=27.20  Aligned_cols=22  Identities=14%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             eeeccccccccCCHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      .++|..||+.|........|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999964

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=89.49  E-value=0.24  Score=28.50  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=21.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ....++|..||+.|........|..
T Consensus         8 ~~k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A            8 GIKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCCCccCCCCCcccCcHHHHHHHHH
Confidence            3567899999999999999998854

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.49  E-value=0.15  Score=34.37  Aligned_cols=41  Identities=27%  Similarity=0.596  Sum_probs=33.9

Q ss_pred             cceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...++|..  ||+.|......+.|...  |..       ..+|.|+.||+.+
T Consensus        36 ~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~k~F   78 (79)
T 2dlk_A           36 QKSFSCPEPACGKSFNFKKHLKEHMKL--HSD-------TRDYICEFSGPSS   78 (79)
T ss_dssp             CCCEECSCTTTCCEESSHHHHHHHHHH--HHT-------SCCCSCCSSSCCC
T ss_pred             CCCeECCCCCCcCccCCHHHHHHHHHH--hCC-------CCCeeCCCCCCCC
Confidence            45799999  99999999999999864  532       3579999999864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=89.29  E-value=0.1  Score=35.24  Aligned_cols=40  Identities=23%  Similarity=0.512  Sum_probs=27.1

Q ss_pred             eec--cccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC--CCCCCCC
Q 027011            6 LKC--GDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRS   54 (229)
Q Consensus         6 lkC--~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~--Cg~~~~~   54 (229)
                      ++|  ..||+.+......+.|...  |..       ..++.|+.  |++.+.+
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~   45 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFS--HTQ-------QLPYECPHEGCDKRFSL   45 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH--HHT-------TCCEECCSTTCCCEESS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHH--hCC-------CCCeeCCCCCCcCccCC
Confidence            678  7888888888888888643  421       24578876  8775433

>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1

Probab=89.14  E-value=0.31  Score=43.80  Aligned_cols=38  Identities=29%  Similarity=0.587  Sum_probs=33.2

Q ss_pred             CHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          114 DKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       114 d~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      +..+|.+|-+ -|.+--.|+|||..++| |++.|++||..
T Consensus         4 ta~~VKeLRe~TGagmmdCKKAL~e~~G-D~ekAie~LR~   42 (291)
T 1xb2_B            4 SKELLMKLRRKTGYSFINCKKALETCGG-DLKQAESWLHK   42 (291)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence            4567788875 48999999999999988 99999999987

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=89.11  E-value=0.25  Score=26.41  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=20.0

Q ss_pred             eeeccccccccCCHHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      .++|..||+.|........|...
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            57899999999999999999654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=88.96  E-value=0.14  Score=34.58  Aligned_cols=38  Identities=16%  Similarity=0.454  Sum_probs=31.7

Q ss_pred             cceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC---CCCCC
Q 027011            3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT---CGKPC   52 (229)
Q Consensus         3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~---Cg~~~   52 (229)
                      ...++|..  |++.+......+.|...  |..          +.|+.   |++.+
T Consensus        29 ~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~----------~~C~~~~~C~~~f   71 (85)
T 2j7j_A           29 QLPYECPHEGCDKRFSLPSRLKRHEKV--HAG----------YPCKKDDSCSFVG   71 (85)
T ss_dssp             TCCEECCSTTCCCEESSHHHHHHHHHH--HHS----------EECCSCSSCCCEE
T ss_pred             CCCeeCCCCCCcCccCCHHHHHHHHHH--hCC----------CCCCCCCCCCCcc
Confidence            45789988  99999999999999854  544          89999   99863

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=88.89  E-value=0.54  Score=36.12  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHH-hCCCCHHHHHHHHHHcCCCCHHHHHHHH
Q 027011          111 PEVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWV  150 (229)
Q Consensus       111 ~~vd~~~l~qL~-eMGF~~~~a~kAL~~Tgn~~~E~A~~WL  150 (229)
                      ..++++.++.++ .+|-|++.|++||..++| |+-.|+-+|
T Consensus        62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~g-Div~Ai~~L  101 (102)
T 1tr8_A           62 MEIPEDDIELVMNQTGASREDATRALQETGG-DLAEAIMRL  101 (102)
T ss_dssp             CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence            568999998877 589999999999999987 888888765

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=88.88  E-value=0.32  Score=25.97  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             ceeeccccccccCCHHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ..++|..||+.|........|...
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            468999999999999999999653

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.68  E-value=0.34  Score=27.76  Aligned_cols=26  Identities=19%  Similarity=0.348  Sum_probs=22.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|........|...
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            6 SGRSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCccCCHHHHHHHHHH
Confidence            35679999999999999999999754

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=88.46  E-value=0.37  Score=25.60  Aligned_cols=23  Identities=26%  Similarity=0.693  Sum_probs=20.1

Q ss_pred             eeeccccccccCCHHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      .++|..||+.|......+.|...
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            58999999999999999998654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=88.45  E-value=0.36  Score=28.31  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|..||+.|........|..  .|.
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~   30 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMN--VHR   30 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHH--TTC
T ss_pred             CCCceECCCCCcccCCHHHHHHHHH--HcC
Confidence            4567999999999999999999964  364

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.04  E-value=0.35  Score=27.64  Aligned_cols=24  Identities=17%  Similarity=0.405  Sum_probs=21.1

Q ss_pred             cceeeccccccccCCHHHHHHHHH
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ...++|..||+.|........|..
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH
Confidence            467999999999999999999964

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=88.02  E-value=0.26  Score=32.82  Aligned_cols=41  Identities=20%  Similarity=0.408  Sum_probs=32.8

Q ss_pred             cceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC--CCCCCC
Q 027011            3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPC   52 (229)
Q Consensus         3 ~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~--~Cg~~~   52 (229)
                      ...++|..  |++.|......+.|...  |..       ..+|.|+  .|++.+
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~~~C~k~f   59 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTRT--HTG-------EKPFSCSWKGCERRF   59 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHHH--HSS-------SCSEECCCTTCCCEE
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHHh--cCC-------CCCccCCCCCCCccc
Confidence            46789988  99999999999999865  532       2579995  599864

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=87.98  E-value=0.38  Score=41.18  Aligned_cols=28  Identities=29%  Similarity=0.552  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCC
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGN  140 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn  140 (229)
                      .+.+.|+.|++|||+++.++.||...|.
T Consensus       168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~  195 (215)
T 1tte_A          168 IDHDLIDEFESQGFEKDKIVEVLRRLGV  195 (215)
T ss_dssp             CSHHHHHHHHHHTCCHHHHHHHHHHSCC
T ss_pred             ccHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence            5788999999999999999999998876

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.96  E-value=0.45  Score=26.97  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ....++|..||+.|........|..
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            6 SGKPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHH
Confidence            3467999999999999999999964

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=87.72  E-value=0.12  Score=39.11  Aligned_cols=50  Identities=18%  Similarity=0.438  Sum_probs=33.9

Q ss_pred             ceeecc--ccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCC--CCCCCCCcccccccc
Q 027011            4 VSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHR   62 (229)
Q Consensus         4 ~slkC~--~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~--Cg~~~~~~~E~~~a~   62 (229)
                      ..++|.  .||+.|......+.|...  |..       ..+|.|+.  ||+.+.+......+.
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~~~~L~~H~  119 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRS--HTG-------EKPYMCEHEGCSKAFSNASDRAKHQ  119 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH--TTT-------CCCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHH--cCC-------CCCeeCCCCCCCCccCCHHHHHHHH
Confidence            457887  488888888888888765  432       24578876  887766655555454

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.51  E-value=0.5  Score=27.85  Aligned_cols=28  Identities=14%  Similarity=0.475  Sum_probs=23.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|..||+.|......+.|...  |.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~   34 (42)
T 2yte_A            7 GEKPYSCAECKETFSDNNRLVQHQKM--HT   34 (42)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHHH--TS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHH--hC
Confidence            35679999999999999999999764  64

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.49  E-value=0.32  Score=36.48  Aligned_cols=42  Identities=19%  Similarity=0.244  Sum_probs=33.5

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      ...++|+.||+.|........|..+ .|+.       ..+|.|..++.-.
T Consensus        48 ekpf~C~~Cgk~F~~~~~L~~H~~r-~Htg-------ekpy~C~~~~~~~   89 (102)
T 2ghf_A           48 NSSYVCVECNFLTKRYDALSEHNLK-YHPG-------EENFKLTMVKRNN   89 (102)
T ss_dssp             SCCEEETTTTEEESSTHHHHTHHHH-TSTT-------CCCEEEEECCCSS
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHHH-hcCC-------CCCeeCCcccCCC
Confidence            4579999999999999999999545 5753       2679999887653

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=87.40  E-value=0.39  Score=27.35  Aligned_cols=23  Identities=17%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             eeeccccccccCCHHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      .++|..||+.|......+.|...
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHHH
Confidence            57899999999999999999753

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=87.37  E-value=0.51  Score=27.79  Aligned_cols=26  Identities=19%  Similarity=0.419  Sum_probs=22.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|+.||+.|......+.|...
T Consensus         8 ~~~~~~C~~C~k~f~~~~~l~~H~~~   33 (42)
T 2epc_A            8 GETPYLCGQCGKSFTQRGSLAVHQRS   33 (42)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCeECCCCCcccCCHHHHHHHhhh
Confidence            35679999999999999999999754

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=87.23  E-value=0.11  Score=27.62  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=17.8

Q ss_pred             eeeccccccccCCHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      .++|..||+.|........|..
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            5789999999888888887754

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.07  E-value=0.51  Score=28.45  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=28.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~   44 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQAT--HSG-------EKPSGPS   44 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHHH--HCC-------CSCSCTT
T ss_pred             CCCCeeccccCChhcCHHHHHHHHHH--cCC-------CCCCCCC
Confidence            35679999999999999999999754  642       2467775

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.85  E-value=0.42  Score=28.85  Aligned_cols=26  Identities=15%  Similarity=0.294  Sum_probs=22.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|........|...
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A            9 GEKPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCcCeECCCCCcccCchHHHHHHHhH
Confidence            35679999999999999999999653

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.83  E-value=0.43  Score=28.88  Aligned_cols=36  Identities=17%  Similarity=0.300  Sum_probs=28.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2enf_A            9 GEKPYKCNECGKVFTQNSHLVRHRG--IHTG-------EKPSGPS   44 (46)
T ss_dssp             CCCSCBCSSSCCBCSSHHHHHHHHT--TTTT-------SSCCCCS
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHH--hhCC-------CCCCCCC
Confidence            3567999999999999999999953  4642       2467775

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.79  E-value=0.42  Score=28.93  Aligned_cols=36  Identities=14%  Similarity=0.218  Sum_probs=28.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2emi_A            9 GERHYECSECGKAFIQKSTLSMHQR--IHRG-------EKPSGPS   44 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHG--GGCS-------CCCCSCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHh--HhCC-------CCCCCCC
Confidence            3567999999999999999999954  3642       2467775

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.75  E-value=0.44  Score=28.85  Aligned_cols=36  Identities=14%  Similarity=0.257  Sum_probs=28.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~   44 (46)
T 2emg_A            9 GENPFICSECGKVFTHKTNLIIHQK--IHTG-------ERPSGPS   44 (46)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHT--TTSC-------CCCSCSC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence            3467999999999999999999964  4653       2467775

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=86.62  E-value=0.44  Score=28.19  Aligned_cols=28  Identities=18%  Similarity=0.504  Sum_probs=23.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|..||+.|......+.|...  |.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~   34 (42)
T 2el5_A            7 GENPYECSECGKAFNRKDQLISHQRT--HA   34 (42)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGG--GC
T ss_pred             CCCCccCCCcChhhCCHHHHHHHHHh--cC
Confidence            35679999999999999999999643  64

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.61  E-value=0.46  Score=28.20  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             CcceeeccccccccCCHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ....++|..||+.|......+.|..
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A            8 GEKPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCCCEECCCCCCccCCHHHHHHHHH
Confidence            3467899999999999999999954

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=86.61  E-value=0.55  Score=28.47  Aligned_cols=36  Identities=14%  Similarity=0.334  Sum_probs=28.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~   44 (46)
T 2emj_A            9 GEKPFECAECGKSFSISSQLATHQRI--HTG-------EKPSGPS   44 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHH--HTT-------SCSSSSC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence            35679999999999999999999754  642       2467775

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.60  E-value=0.55  Score=28.40  Aligned_cols=36  Identities=11%  Similarity=0.182  Sum_probs=28.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|........|...  |..       ..+|+|+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~~~~~C~   44 (46)
T 2em3_A            9 GEKPYECKVCSKAFTQKAHLAQHQKT--HTG-------EKPSGPS   44 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHH--HCC-------CCCCCSC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence            35679999999999999999999854  642       2467775

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=86.58  E-value=0.41  Score=25.32  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             eeeccccccccCCHHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      .++|..||+.|........|...
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH
Confidence            57899999999988888888643

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.54  E-value=0.44  Score=28.86  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|+|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHSNLTTHQV--IHTG-------EKPSGPS   44 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHHHHHHHHT--TTCC-------SCCSSCC
T ss_pred             CCCCeECCcCChhhCCHHHHHHHHH--HhCC-------CCCCCCC
Confidence            4567999999999999999999964  4653       2467775

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.48  E-value=0.47  Score=27.98  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=23.2

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|+.||+.|......+.|..  .|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~   34 (41)
T 2ept_A            7 GQRVYECQECGKSFRQKGSLTLHER--IHT   34 (41)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHGG--GCC
T ss_pred             CCCCeECCCCCCCcCCHHHHHHHHH--HhC
Confidence            3567999999999999999999964  364

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.47  E-value=0.51  Score=27.09  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             CcceeeccccccccCCH-HHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSV-QEAQEHAE   26 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~-~~aq~Ha~   26 (229)
                      ....++|..||+.|... .....|..
T Consensus         6 ~~k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            6 SGRAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCCCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCCCeECCCCChhhccCHHHHHHHHH
Confidence            34679999999999998 88888864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.46  E-value=0.46  Score=28.09  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=22.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|......+.|...
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2en2_A            8 GEKPYKCETCGARFVQVAHLRAHVLI   33 (42)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHTHH
T ss_pred             CCCCEeCCCcChhhCCHHHHHHHHHH
Confidence            35679999999999999999999653

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.39  E-value=0.47  Score=28.91  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2eon_A            9 GEKPYKCQVCGKAFRVSSHLVQHHS--VHSG-------ERPSGPS   44 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHTT--TTTS-------CCSCTTS
T ss_pred             CCcccCCCCCCcccCcHHHHHHHHH--hcCC-------CCCCCCC
Confidence            3567999999999999999999964  4653       2467776

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.25  E-value=0.44  Score=28.41  Aligned_cols=28  Identities=25%  Similarity=0.477  Sum_probs=23.5

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|..||+.|......+.|..  .|.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~   36 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYLIIHTR--THT   36 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHHHHHHT--TTC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHhh--hcC
Confidence            3567999999999999999999974  464

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.21  E-value=0.58  Score=28.20  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=28.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~kp~~C~   44 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQRI--HTG-------EKPSGPS   44 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHH--HHS-------CCCSSST
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHHh--cCC-------CCCCCCC
Confidence            35679999999999999999999654  532       2467775

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=85.99  E-value=0.59  Score=29.74  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=24.2

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ...++|..||+.|......+.|..+ .|.
T Consensus        28 ~~~~~C~~C~~~f~~~~~l~~H~~~-~H~   55 (60)
T 2adr_A           28 EKPYPCGLCNRAFTRRDLLIRHAQK-IHS   55 (60)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHHTT-TSC
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHH-HcC
Confidence            4579999999999999999999866 564

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.96  E-value=0.44  Score=28.47  Aligned_cols=36  Identities=17%  Similarity=0.390  Sum_probs=27.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~~~~C~   44 (44)
T 2eoj_A            9 GENPYECCECGKVFSRKDQLVSHQK--THSG-------QSGPSSG   44 (44)
T ss_dssp             SCCSCEETTTTEECSSHHHHHHHHT--TSSS-------SCSCCCC
T ss_pred             CCcCeeCCCCCCccCCHHHHHHHHH--HcCC-------CCCCCCC
Confidence            3567999999999999999999954  4653       2456664

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.96  E-value=0.52  Score=28.58  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=28.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|+|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2em6_A            9 GEKCYKCDVCGKEFSQSSHLQTHQR--VHTG-------EKPSGPS   44 (46)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHT--TTSS-------SCCCCTT
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCC
Confidence            3567999999999999999999953  4653       2467775

>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*

Probab=85.93  E-value=0.37  Score=38.52  Aligned_cols=40  Identities=23%  Similarity=0.545  Sum_probs=25.9

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhh---------hccCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVL---------NLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl---------~l~C~~Cg~~   51 (229)
                      .-.++|.+||..+....         -++.+.+....-.         .++||.||++
T Consensus        68 p~~~~C~~CG~~~~~~~---------~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~  116 (139)
T 3a43_A           68 EAVFKCRNCNYEWKLKE---------VKDKFDERIKEDIHFIPEVVHAFLACPKCGSH  116 (139)
T ss_dssp             CCEEEETTTCCEEEGGG---------CTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred             CCcEECCCCCCEEeccc---------ccccccccccccccccccccccCCcCccccCC
Confidence            45789999999876522         2234444433221         6899999997

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.84  E-value=0.47  Score=28.62  Aligned_cols=36  Identities=17%  Similarity=0.312  Sum_probs=28.2

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|+.||+.|......+.|...  |..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~   44 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQLHVHQRI--HTG-------ENPSGPS   44 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHHHHHHGG--GSS-------SCCCSSS
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence            35679999999999999999999643  653       2467776

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.82  E-value=0.64  Score=28.18  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=28.2

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~   44 (46)
T 2eoh_A            9 GKKPYECKECRKTFIQIGHLNQHKRV--HTG-------ERSSGPS   44 (46)
T ss_dssp             CSCSCCCSSSCCCCSSHHHHHHHHHH--CSS-------CCSCSTT
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence            34679999999999999999999754  642       2467776

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.75  E-value=0.46  Score=28.75  Aligned_cols=36  Identities=17%  Similarity=0.386  Sum_probs=28.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2eq2_A            9 GGKPYQCNECGKAFSQTSKLARHQR--VHTG-------EKPSGPS   44 (46)
T ss_dssp             SSCSSSCCSSCCCCSSHHHHHHHGG--GGCC-------CCCCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH--HcCC-------CCCCCCC
Confidence            3567999999999999999999964  3653       2467775

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.72  E-value=0.66  Score=27.57  Aligned_cols=28  Identities=14%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|..||+.|........|...  |+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~   36 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQRT--HT   36 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHH--TT
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHH--hC
Confidence            34679999999999999999999754  64

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.72  E-value=0.52  Score=28.41  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|........|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~~p~~C~   44 (46)
T 2yts_A            9 GEKPYICNECGKSFIQKSHLNRHRR--IHTG-------EKPSGPS   44 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHGG--GTSS-------CCSSCCC
T ss_pred             CCcCEECCCCChhhCChHHHHHHHH--hcCC-------CCCcCCC
Confidence            3567999999999999999999964  4642       2467775

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=85.61  E-value=0.57  Score=33.92  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=26.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN   32 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n   32 (229)
                      ....|+|..||+.|........|..+ -|+.
T Consensus        53 ~~k~~~C~~C~k~F~~~~~L~~H~~~-~H~~   82 (85)
T 2lv2_A           53 AAQVFPCKYCPATFYSSPGLTRHINK-CHPS   82 (85)
T ss_dssp             CSSSEECTTSSCEESSHHHHHHHHHT-TCTT
T ss_pred             CCCccCCCCCCCEeCCHHHHHHhCcc-cCcC
Confidence            35679999999999999999999887 6763

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=85.70  E-value=0.16  Score=27.47  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             ceeeccccccccCCHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ..++|..||+.|......+.|..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            35789999999998888888864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.42  E-value=0.55  Score=28.10  Aligned_cols=28  Identities=18%  Similarity=0.444  Sum_probs=23.4

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|..||+.|......+.|..  .|.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~   36 (44)
T 2emb_A            9 TRKRYECSKCQATFNLRKHLIQHQK--THA   36 (44)
T ss_dssp             CCSSEECTTTCCEESCHHHHHHHGG--GGC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHH--HcC
Confidence            3567999999999999999999974  364

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=85.61  E-value=0.16  Score=27.49  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=18.3

Q ss_pred             eeeccccccccCCHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      .++|..||+.|........|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            5789999999988888888864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.37  E-value=0.57  Score=28.03  Aligned_cols=28  Identities=18%  Similarity=0.447  Sum_probs=23.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      ....++|..||+.|........|...  |.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~   36 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHERT--HA   36 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHHH--CC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhHh--cC
Confidence            35679999999999999999999764  64

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.27  E-value=0.47  Score=28.73  Aligned_cols=36  Identities=17%  Similarity=0.312  Sum_probs=27.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2yti_A            9 GEKPYKCNECGKVFTQNSHLARHRG--IHTG-------EKPSGPS   44 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHT--TTSC-------SCCSSTT
T ss_pred             CCcCeECCCCCcccCChhHHHHHhH--hcCC-------CCCCCCC
Confidence            3567899999999999999999953  4652       2467775

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.25  E-value=0.7  Score=28.07  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ...++|..|++.|......+.|...  |..       ..+|.|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~   44 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRI--HTG-------EKPSGPS   44 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHH--HSS-------CCCSSCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHH--hCC-------CCCCCCC
Confidence            4679999999999999999999654  642       2467775

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.15  E-value=0.72  Score=27.65  Aligned_cols=25  Identities=28%  Similarity=0.619  Sum_probs=22.1

Q ss_pred             cceeeccccccccCCHHHHHHHHHH
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ...++|..||+.|......+.|...
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eou_A           10 KTTSECQECGKIFRHSSLLIEHQAL   34 (44)
T ss_dssp             SCCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            4678999999999999999999754

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.13  E-value=0.63  Score=28.20  Aligned_cols=36  Identities=14%  Similarity=0.223  Sum_probs=28.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|...  |..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~   44 (46)
T 2eoz_A            9 GEKPYSCNVCGKAFVLSAHLNQHLRV--HTQ-------ETLSGPS   44 (46)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHHH--HSS-------CCSSSCC
T ss_pred             CCCCeECcccChhhCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence            35679999999999999999999654  542       2457776

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.85  E-value=0.61  Score=28.28  Aligned_cols=36  Identities=14%  Similarity=0.300  Sum_probs=27.6

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|........|..  .|..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-------~k~~~C~   44 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQR--VHTG-------EKPSGPS   44 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGG--GGTT-------CCCSSCC
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHH--hcCC-------CCCCCCC
Confidence            3567999999999999999999954  3642       2467775

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.78  E-value=1.1  Score=30.31  Aligned_cols=39  Identities=15%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ..++|..|++.|........|...  |..       ..++.|+.||..
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~--h~~-------~~~~~~~~~~~~   84 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADN--CAG-------PDGVEGENSGPS   84 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHH--CCC-------CCSCCCCCCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHH--ccC-------CCCcccCCCCCC
Confidence            579999999999999999999876  332       245789999874

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.55  E-value=0.77  Score=27.79  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ...++|..|++.|......+.|...  |+.       ..+|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~   44 (46)
T 2emz_A           10 ERPFKCNECGKGFGRRSHLAGHLRL--HSR-------EKSSGPS   44 (46)
T ss_dssp             CCSCCCSSSCCCCSSHHHHHHHHHH--HHH-------TTCCCSC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence            4679999999999999999999754  431       2567776

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=84.52  E-value=0.34  Score=34.81  Aligned_cols=44  Identities=16%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             Ccceeeccc--cccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC--CCCCCCCC
Q 027011            2 AGVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPCRS   54 (229)
Q Consensus         2 ~~~slkC~~--Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~--~Cg~~~~~   54 (229)
                      ....++|..  ||+.|......+.|...  |..       ..++.|+  .||+.+.+
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~   50 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRK--HTG-------EKPYQCDFKDCERRFSR   50 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHH--HHT-------TCCEECCSTTCCCEESS
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHh--hCC-------CCCccCCCCCCcCccCC
Confidence            356799996  99999999999999875  432       2457887  68876433

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=84.43  E-value=0.49  Score=37.25  Aligned_cols=17  Identities=24%  Similarity=0.487  Sum_probs=9.6

Q ss_pred             hhccCCC--CCCCCCCccc
Q 027011           41 LNLVCAT--CGKPCRSKTE   57 (229)
Q Consensus        41 l~l~C~~--Cg~~~~~~~E   57 (229)
                      .+|.|+.  ||+.+.+...
T Consensus       133 ~~~~C~~~~C~k~F~~~~~  151 (190)
T 1tf6_A          133 LPYECPHEGCDKRFSLPSR  151 (190)
T ss_dssp             CSSBCCSSSCCCBCSSHHH
T ss_pred             CCccCCCCCCCchhcCHHH
Confidence            4567766  7766544333

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.09  E-value=0.58  Score=28.38  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=27.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|......+.|..  .|+.-      ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~~------~~~~~C~   45 (46)
T 2eoy_A            9 KEKCFKCNKCEKTFSCSKYLTQHER--IHTRG------VKSGPSS   45 (46)
T ss_dssp             CSCCEECSSSCCEESSSHHHHHHHT--TCCSC------CTTSSSC
T ss_pred             CCCCEECcCCCCcCCCHHHHHHHHH--HcCCC------CCCCCCC
Confidence            3467999999999999999999963  46421      1457775

>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1

Probab=83.80  E-value=1  Score=38.47  Aligned_cols=38  Identities=34%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          115 KELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       115 ~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      ..+|..|-+ -|-+--.|++||..++| |++.|++||...
T Consensus         4 a~~VKeLRe~TGagmmdCKkAL~e~~G-D~ekAie~LR~k   42 (196)
T 1aip_C            4 MELIKKLREATGAGMMDVKRALEDAGW-DEEKAVQLLRER   42 (196)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHc
Confidence            346777765 48999999999999988 999999999753

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.79  E-value=0.77  Score=33.19  Aligned_cols=41  Identities=17%  Similarity=0.369  Sum_probs=32.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ....++|..||+.|......+.|...  |+.       ..+|+|..|...
T Consensus        22 ~~kpy~C~~C~k~F~~~~~L~~H~~~--Ht~-------ekp~~C~~~~~~   62 (88)
T 1x6f_A           22 QNSTYQCKHCDSKLQSTAELTSHLNI--HNE-------EFQKRAKRQERR   62 (88)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHH--HHH-------HHHHHCCCCSCC
T ss_pred             CCCCCcCCCCCCEeCCHHHHHHHHHH--hCC-------CCCcccchhhhH
Confidence            34679999999999999999999754  532       367999988764

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=83.65  E-value=0.7  Score=29.24  Aligned_cols=26  Identities=27%  Similarity=0.489  Sum_probs=22.1

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|......+.|...
T Consensus        21 ~~k~~~C~~C~k~f~~~~~L~~H~~~   46 (54)
T 1yui_A           21 SEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             SSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHHH
Confidence            34678999999999999999999754

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=83.62  E-value=0.31  Score=37.64  Aligned_cols=28  Identities=32%  Similarity=0.823  Sum_probs=21.5

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhc-cCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNL-VCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l-~C~~Cg~~   51 (229)
                      ...++|.+||..+....                     ... +||.||.+
T Consensus        71 p~~~~C~~CG~~~e~~~---------------------~~~~~CP~Cgs~   99 (119)
T 2kdx_A           71 KVELECKDCSHVFKPNA---------------------LDYGVCEKCHSK   99 (119)
T ss_dssp             CCEEECSSSSCEECSCC---------------------STTCCCSSSSSC
T ss_pred             cceEEcCCCCCEEeCCC---------------------CCCCcCccccCC
Confidence            45789999999876521                     257 89999986

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.43  E-value=0.46  Score=27.99  Aligned_cols=25  Identities=16%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             CcceeeccccccccCCHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      ....++|..||+.|........|..
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A            8 GEKPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             SCCSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCCCeeCCCccchhCCHHHHHHHHH
Confidence            3467899999999999999888864

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.40  E-value=0.8  Score=27.63  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=27.7

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ....++|..||+.|........|...  |..       ..+|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~~~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLRS--HER-------TDPSGPS   44 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHH--HHH-------SCCSSCS
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHHH--hCC-------CCCCCCC
Confidence            35679999999999999999999754  421       2567776

>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1

Probab=83.33  E-value=1.6  Score=30.42  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=26.1

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHc----CCCCHHHHH
Q 027011          114 DKELLKELEAMGFPVARATRALHYS----GNANVEAAV  147 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~T----gn~~~E~A~  147 (229)
                      .+++++.|+.+||++..|.+|+..-    .+.+++..+
T Consensus        17 ~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lI   54 (62)
T 1ixs_A           17 AEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI   54 (62)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            4679999999999999999998764    134566543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=82.84  E-value=0.57  Score=36.85  Aligned_cols=21  Identities=19%  Similarity=0.512  Sum_probs=11.3

Q ss_pred             eeec--cccccccCCHHHHHHHH
Q 027011            5 SLKC--GDCGALLRSVQEAQEHA   25 (229)
Q Consensus         5 slkC--~~Cg~~L~~~~~aq~Ha   25 (229)
                      .++|  ..||+.|......+.|.
T Consensus        42 ~~~C~~~~C~~~f~~~~~l~~H~   64 (190)
T 1tf6_A           42 PFPCKEEGCEKGFTSLHHLTRHS   64 (190)
T ss_dssp             SSCCSSTTCCCCCSSHHHHHHHH
T ss_pred             CccCCCCCCChhhCCHHHHHHHH
Confidence            3455  45555555555555554

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=82.47  E-value=0.92  Score=32.91  Aligned_cols=21  Identities=19%  Similarity=0.536  Sum_probs=11.3

Q ss_pred             eeeccccccccCCHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHA   25 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha   25 (229)
                      .++|..||+.|......+.|.
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~   54 (124)
T 1ubd_C           34 VHVCAECGKAFVESSKLKRHQ   54 (124)
T ss_dssp             CEECTTTCCEESSHHHHHHHG
T ss_pred             CeECCCCCchhCCHHHHHHHH
Confidence            345555555555555555553

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=82.18  E-value=0.46  Score=31.66  Aligned_cols=37  Identities=19%  Similarity=0.462  Sum_probs=24.8

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ..++|..||.+.....+--        +-|++-   -.+.+||.||.+
T Consensus         3 ~~y~C~vCGyvyd~~~Gd~--------t~f~~l---P~dw~CP~Cg~~   39 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPAEHDN--------VPFDQL---PDDWCCPVCGVS   39 (46)
T ss_dssp             CCEEETTTCCEECGGGGTT--------CCGGGS---CTTCBCTTTCCB
T ss_pred             CEEECCCCCeEEeCCcCCC--------cchhhC---CCCCcCcCCCCc
Confidence            4689999999976432111        556654   234799999974

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=81.89  E-value=0.56  Score=31.79  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=24.3

Q ss_pred             CcceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN   32 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n   32 (229)
                      ....++|.+||+.|........|. + .|++
T Consensus        29 ~ekp~~C~~C~k~F~~~~~L~~H~-~-~Htg   57 (60)
T 4gzn_C           29 GYRPRSCPECGKCFRDQSEVNRHL-K-VHQN   57 (60)
T ss_dssp             TCCCEECTTTCCEESSHHHHHHHG-G-GGSC
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHh-C-ccCC
Confidence            456899999999999999999995 3 3763

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.53  E-value=1.3  Score=29.73  Aligned_cols=30  Identities=20%  Similarity=0.453  Sum_probs=25.9

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNF   33 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nF   33 (229)
                      ...++|..||+.|......+.|..+ -|..-
T Consensus        36 ~~~~~C~~C~k~f~~~~~L~~H~~~-~H~~~   65 (78)
T 2d9h_A           36 ALRFPCEFCGKRFEKPDSVAAHRSK-SHPAL   65 (78)
T ss_dssp             TCCEECTTTCCEESSHHHHHHHHHH-TSTTT
T ss_pred             CcccCCCCCCchhCCHHHHHHHHHH-hCCCC
Confidence            4679999999999999999999877 67653

>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}

Probab=81.53  E-value=1.9  Score=32.94  Aligned_cols=65  Identities=20%  Similarity=0.278  Sum_probs=40.6

Q ss_pred             HHHHHHhCCCCHHHHHHHHHH----cCC--CCHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 027011          117 LLKELEAMGFPVARATRALHY----SGN--ANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQ  188 (229)
Q Consensus       117 ~l~qL~eMGF~~~~a~kAL~~----Tgn--~~~E~A~~WL~~h~dD~did~pl~~p~~s~s~~~~~~LTeEEkkaK~~  188 (229)
                      .+.+.++|||+....++++..    +|.  .+++.-+.=|+...++.  ..+.. +..+    ...++++||.-.+|+
T Consensus        30 vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~~--~~~~~-~~~s----~~~~~s~eEqLrrLq  100 (104)
T 2kna_A           30 MVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDS--MQDES-SQTS----LQKEISTEEQLRRLQ  100 (104)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSC--CCCCS-SCCC----CCCCCCHHHHGGGTC
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhh--ccccc-cccc----ccCCCCHHHHHHHHH
Confidence            577889999999999887766    443  56888787777654432  11111 1111    245788877644443

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.42  E-value=0.57  Score=28.03  Aligned_cols=26  Identities=19%  Similarity=0.565  Sum_probs=22.4

Q ss_pred             CcceeeccccccccCCHHHHHHHHHH
Q 027011            2 AGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         2 ~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      ....++|..||+.|......+.|...
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2eox_A            9 DSKSYNCNECGKAFTRIFHLTRHQKI   34 (44)
T ss_dssp             CCCCEEETTTTEEESSSHHHHTTHHH
T ss_pred             CCCCeECcccCcccCCHHHHHHHHHH
Confidence            35679999999999999999999764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=80.83  E-value=0.89  Score=24.04  Aligned_cols=22  Identities=18%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             eeecc--ccccccCCHHHHHHHHH
Q 027011            5 SLKCG--DCGALLRSVQEAQEHAE   26 (229)
Q Consensus         5 slkC~--~Cg~~L~~~~~aq~Ha~   26 (229)
                      .++|.  .||+.|......+.|..
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            58999  99999999999999964

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.74  E-value=1.3  Score=30.78  Aligned_cols=38  Identities=21%  Similarity=0.491  Sum_probs=28.8

Q ss_pred             cceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         3 ~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ...++|..|++.+. ....+.|...+|          ..++.|+.||+.
T Consensus        15 ~r~~~C~~C~~~~~-~~~L~~H~~~c~----------~~~~~C~~C~~~   52 (75)
T 2d9k_A           15 LRLAVCQHCDLELS-ILKLKEHEDYCG----------ARTELCGNCGRN   52 (75)
T ss_dssp             CCCEECSSSCCEEC-HHHHHHHHHHHH----------HCEEECSSSCCE
T ss_pred             CcccCCcccChHhh-HHHHHHHHhHcC----------CCceEcccCCCc
Confidence            45789999999996 777777863322          356899999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1veka_	84	a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress	7e-22
d1whca_	64	a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus	4e-21
d2crna1	51	a.5.2.1 (A:8-58) Suppressor of T-cell receptor sig	4e-18
d1wjia_	63	a.5.2.1 (A:) Tudor domain containing protein 3, TD	3e-17
d2cpwa1	51	a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1	2e-13
d1wgna_	63	a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1	2e-10
d1wiva_	73	a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress	3e-10
d1vg5a_	73	a.5.2.1 (A:) Rhomboid family protein At3g58460 {Th	2e-07
d1oqya1	41	a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Hum	6e-06
d2cosa1	41	a.5.2.1 (A:8-48) Serine/threonine protein kinase L	0.001

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 84

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 83.8 bits (207), Expect = 7e-22
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 99  DMSGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158
           D    +  E  +P  ++E++ +L +MGF      +A   + NA VE A+NW++ H +DPD
Sbjct: 14  DGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73

Query: 159 IDEMPMVPVSGG 170
           ID  P+   S G
Sbjct: 74  IDA-PISGPSSG 84

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 64

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.0 bits (200), Expect = 4e-21
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG 169
              +   L+ L  MGFP  RA +AL  +GN  +EAA++W++EHE+DPD+DE    P SG
Sbjct: 6   SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLSGPSSG 64

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 4e-18
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161
              LL+ L AMGFPV  A +AL  +G    E A+ W+ +H NDP +D+
Sbjct: 2   SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDD 49

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (174), Expect = 3e-17
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG 169
             VD++ LK +  MGF    + +AL  +GN N+EAA+N ++       +   P  P SG
Sbjct: 6   SGVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQKPVMGPPSGPSSG 63

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (147), Expect = 2e-13
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153
                   L  L +MGFP ARA +AL  +G  +V+ A +W+  H
Sbjct: 8   GTIKHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 51

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (126), Expect = 2e-10
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 101 SGSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153
           SG+  E  +    +++ ++ +  MG+      RA+   G  N+E  ++++  H
Sbjct: 6   SGAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAH 57

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.5 bits (126), Expect = 3e-10
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 104 QPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158
            P      ++D+  +  L + GF    A +AL  SG  ++E A +WV  +     
Sbjct: 19  APISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGPSS 72

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 102 GSQPEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154
              P+        +E +++L AMGF   +   AL  + + ++  AV  ++   
Sbjct: 17  AVLPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQS 68

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 6e-06
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 116 ELLKELEAMGFPVARATRALHYSGNANVEAAVNW 149
            +L E+ +MG+   R   AL  S N N   AV +
Sbjct: 6   TMLTEIMSMGYERERVVAALRASYN-NPHRAVEY 38

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.5 bits (76), Expect = 0.001
 Identities = 13/38 (34%), Positives = 25/38 (65%)

Query: 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWV 150
           V++++L+EL   G     A RAL  +G+ ++EAA+ ++
Sbjct: 1   VNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	99.83
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	99.8
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	99.79
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	99.69
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	99.6
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	99.44
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	99.36
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	99.3
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	99.27
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	98.77
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.2
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	98.19
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	98.16
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	98.07
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1vega_	83	NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculu	97.68
d1oqya2	44	DNA repair protein Hhr23a {Human (Homo sapiens) [T	97.34
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	97.12
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.86
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.15
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	96.0
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	95.87
d3e46a1	42	Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal	95.85
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	95.6
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	95.49
d2dkla1	72	Trinucleotide repeat containing 6c protein, TNRC6C	95.28
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	94.95
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	94.8
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	94.05
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	93.89
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	93.7
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	92.73
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	92.69
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	92.68
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	92.4
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	90.41
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	90.4
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	90.25
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	88.82
d2cp8a1	41	Migration-inducing protein 19 NBR1 {Human (Homo sa	87.8
d2k0bx1	52	Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [Tax	86.74
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	85.02
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	84.97
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	84.88
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	81.8
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	81.14
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	81.02

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=3.8e-21  Score=143.69  Aligned_cols=67  Identities=36%  Similarity=0.612  Sum_probs=60.1

Q ss_pred             CCCCCCccc------------CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011          101 SGSQPEEMV------------EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV  167 (229)
Q Consensus       101 g~~~gEe~l------------~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~  167 (229)
                      |.|+||+++            .+.+|+++|.+|++|||++++|+|||++|+|.++|.|++|||+|++|+|+|+|+..|+
T Consensus         4 G~~~gE~~lpe~~~~~~~~~~~p~~d~~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d~d~d~pl~~p~   82 (84)
T d1veka_           4 GSSGGEELLPDGVPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISGPS   82 (84)
T ss_dssp             CCCCCCCSCCSSCSSSCCCSCCCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSCSSSCC
T ss_pred             CCCCCcccCCCCCCccccCcCCCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCccCCCCCCC
Confidence            556777665            3457999999999999999999999999999999999999999999999999998765

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-20  Score=128.97  Aligned_cols=50  Identities=42%  Similarity=0.701  Sum_probs=47.7

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCC
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMP  163 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl  163 (229)
                      |+++|++|++|||++++|+|||++|||.++|+|++||++|++||++|+|+
T Consensus         2 ~p~~v~~L~~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h~~d~d~d~Pl   51 (51)
T d2crna1           2 SPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI   51 (51)
T ss_dssp             SCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCcCCCC
Confidence            56789999999999999999999999999999999999999999999986

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=5.7e-20  Score=130.87  Aligned_cols=58  Identities=43%  Similarity=0.754  Sum_probs=53.7

Q ss_pred             CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011          110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV  167 (229)
Q Consensus       110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~  167 (229)
                      ...+|+++|++|++|||++++|+|||++|||.++|+|++|||+|++|+++++|+..|+
T Consensus         5 ~s~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d~d~~~p~~~~~   62 (64)
T d1whca_           5 SSGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLSGPS   62 (64)
T ss_dssp             CCCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCCSSCCC
T ss_pred             CCccCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Confidence            3567889999999999999999999999999999999999999999999999987654

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-17  Score=116.97  Aligned_cols=56  Identities=32%  Similarity=0.472  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCCCCCCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV  167 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~did~pl~~p~  167 (229)
                      ..+|++.|++|++|||++++|++||++++| ++|+|++|||+|++|+++++|+..|+
T Consensus         6 ~~~d~~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~~wL~~~~~~~~~~~p~~~ps   61 (63)
T d1wjia_           6 SGVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQKPVMGPPSGPS   61 (63)
T ss_dssp             CSSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHSSCCCCCSSCCCSS
T ss_pred             CccCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCCCccCCCCCCC
Confidence            458999999999999999999999999998 99999999999999999999986554

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.9e-16  Score=107.98  Aligned_cols=43  Identities=37%  Similarity=0.618  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      +.+|++.|++|++|||++++|++||.+|||.++|.||+|||+|
T Consensus         9 ~~~~~~~l~~L~~MGF~~~~a~~AL~~t~n~~ve~A~~WLl~H   51 (51)
T d2cpwa1           9 TIKHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH   51 (51)
T ss_dssp             SSSCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHcCCCHHHHHHHHHHHCCCCHHHHHHHHHcC
Confidence            4578899999999999999999999999999999999999998

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.44  E-value=6.5e-14  Score=101.45  Aligned_cols=47  Identities=28%  Similarity=0.556  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Q 027011          110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP  157 (229)
Q Consensus       110 ~~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD~  157 (229)
                      ...+++..|++|++|||++++|++||+.+|| |+|+|++|||+|+.+.
T Consensus        25 ~~~~d~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~Av~~Lls~~~~~   71 (73)
T d1wiva_          25 TSDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGPS   71 (73)
T ss_dssp             SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSCCSS
T ss_pred             CCCCCHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHHHHcCCCCC
Confidence            3458999999999999999999999999998 9999999999997754

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-13  Score=96.67  Aligned_cols=44  Identities=18%  Similarity=0.463  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN  155 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d  155 (229)
                      +.+|++.|++|++|||++++|++||+.++| |+|+|++|||+|..
T Consensus        16 ~~~de~~v~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~Lls~~~   59 (63)
T d1wgna_          16 SPSERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSG   59 (63)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSC
T ss_pred             CchhHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence            336889999999999999999999999998 89999999999954

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=1.6e-12  Score=94.06  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN  155 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~d  155 (229)
                      ..++++.|++|++|||++++|++||++++| |+|+|++|||+|+.
T Consensus        26 ~~~~ee~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          26 VAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSG   69 (73)
T ss_dssp             SCCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSC
T ss_pred             cCcCHHHHHHHHHhCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCC
Confidence            457899999999999999999999999998 99999999999954

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.1e-13  Score=86.59  Aligned_cols=37  Identities=32%  Similarity=0.488  Sum_probs=35.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       115 ~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      +..|++|++|||++++|++||++++| |+|+|++||++
T Consensus         5 e~~i~~L~~MGF~~~~a~~AL~~~~~-N~e~A~~~LlS   41 (41)
T d1oqya1           5 ETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLT   41 (41)
T ss_dssp             HHHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHhC
Confidence            57899999999999999999999988 99999999985

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=98.77  E-value=3e-09  Score=69.19  Aligned_cols=39  Identities=31%  Similarity=0.465  Sum_probs=36.2

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      .+.+|+.|++|||+++.|++||.+.++ |++.|+|+|+++
T Consensus         4 k~~ai~eL~~MGF~e~~A~~AL~k~~w-nleaAtN~LLd~   42 (43)
T d2g3qa1           4 KSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHcCC-CHHHHHHHHHhc
Confidence            457899999999999999999999987 999999999986

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=1.1e-06  Score=57.30  Aligned_cols=37  Identities=32%  Similarity=0.562  Sum_probs=33.3

Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          115 KELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       115 ~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      +.-|+||.+||| ++++..+||.+||+ |+++|++.|++
T Consensus         6 ~~QL~qL~~MGF~d~~~Ni~AL~~t~G-dV~~Aie~Ll~   43 (44)
T d2bwba1           6 EHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN   43 (44)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHhC
Confidence            467999999998 67888999999998 99999999985

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=1.2e-06  Score=58.72  Aligned_cols=40  Identities=23%  Similarity=0.251  Sum_probs=35.6

Q ss_pred             CHHHHHHHHhCCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCC
Q 027011          114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE  154 (229)
Q Consensus       114 d~~~l~qL~eMGF-~~~~a~kAL~~Tgn~~~E~A~~WL~~h~  154 (229)
                      -+.-|++|.+||| ++++..+||.+||+ |+++|++.|+++.
T Consensus         8 y~~QL~qL~~MGF~d~~~Ni~AL~~t~G-dV~~Aie~Ll~~~   48 (50)
T d2dnaa1           8 FSKEMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQ   48 (50)
T ss_dssp             THHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcC
Confidence            3567999999998 77888999999998 9999999999874

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=1.1e-06  Score=61.05  Aligned_cols=39  Identities=26%  Similarity=0.396  Sum_probs=34.8

Q ss_pred             CCHHHHHHHHhCCCC-HHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          113 VDKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       113 vd~~~l~qL~eMGF~-~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      .-+.-|++|.+|||. +++..+||..||| |++.|+++|+.
T Consensus        21 ry~~QL~qL~eMGF~d~~~Nl~AL~~t~G-dv~~Aie~Ll~   60 (61)
T d1veja1          21 RYQQELEELKALGFANRDANLQALVATDG-DIHAAIEMLLG   60 (61)
T ss_dssp             TSHHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHcCC-CHHHHHHHHhc
Confidence            457889999999995 7777999999998 99999999985

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=2.1e-06  Score=54.22  Aligned_cols=39  Identities=33%  Similarity=0.564  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 027011          113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       113 vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~  151 (229)
                      +|..+++.|+.-||+++.+.+||+.||++++|+|++||-
T Consensus         1 vnRQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~is   39 (41)
T d2cosa1           1 VNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS   39 (41)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHh
Confidence            467789999999999999999999999999999999984

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.5e-05  Score=49.99  Aligned_cols=37  Identities=32%  Similarity=0.444  Sum_probs=32.3

Q ss_pred             HHHHHHHHhCCCC-HHHHHHHHHHcCCCCHHHHHHHHHh
Q 027011          115 KELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVE  152 (229)
Q Consensus       115 ~~~l~qL~eMGF~-~~~a~kAL~~Tgn~~~E~A~~WL~~  152 (229)
                      +.-|++|.+|||. +++..+||..||+ |+++|++.|.+
T Consensus         3 ~~QL~~L~~MGF~d~~~Ni~AL~~t~G-dv~~Aie~Ll~   40 (41)
T d2daha1           3 QVQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence            4568999999986 5677899999998 99999999975

>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: NEDD8 ultimate buster-1 (Nub1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=5.8e-05  Score=54.45  Aligned_cols=45  Identities=29%  Similarity=0.374  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      ..++++.|+||+-|||+++.|+.||+.+++ |++.|.+=|..|..-
T Consensus        26 ~~~sQesidqLvYMGF~~~~Ae~ALRvfrG-nVQlAaQtLahngG~   70 (83)
T d1vega_          26 ASPSQESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGGS   70 (83)
T ss_dssp             CCCCHHHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHhcccHHHHHHHHHHhcc-cHHHHHHHHHHcCCc
Confidence            457999999999999999999999999998 999999998887653

>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=2.3e-05  Score=50.84  Aligned_cols=39  Identities=28%  Similarity=0.509  Sum_probs=35.6

Q ss_pred             CHHHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      +..+++.|.+|||+++.+..|-.+. ++|.+.|.||||+|
T Consensus         4 e~~aIeRL~~LGF~r~~viqay~AC-dKNEelAaN~L~~~   42 (44)
T d1oqya2           4 EKEAIERLKALGFPESLVIQAYFAC-EKNENLAANFLLSQ   42 (44)
T ss_dssp             THHHHHHHHHHTCCSHHHHHHTSSS-SSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHh-CcCHHHHHHHHHHc
Confidence            5688999999999999999998886 56999999999987

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.12  E-value=0.00041  Score=42.45  Aligned_cols=35  Identities=23%  Similarity=0.462  Sum_probs=30.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 027011          116 ELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       116 ~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~  151 (229)
                      +.+.||++|||++-.|..||.+.++ +++.|..+|+
T Consensus         4 skiaqlvsmgfdpleaaqaldaang-dldvaasfll   38 (38)
T d1z96a1           4 SKIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL   38 (38)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred             hHHHHHHHcCCCHHHHHHHHhhhcC-cHHHHHHhhC
Confidence            4689999999999999999999866 9999988873

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.86  E-value=2.2e-05  Score=55.71  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=18.7

Q ss_pred             HHHHHHHhCCCCCCCCCCCCCC
Q 027011          145 AAVNWVVEHENDPDIDEMPMVP  166 (229)
Q Consensus       145 ~A~~WL~~h~dD~did~pl~~p  166 (229)
                      .|++|||+|++||+++.|+..+
T Consensus         3 ~~~~~l~~h~dDpdid~P~~~~   24 (73)
T d1wiva_           3 SGSSGLLSHMDDPDIDAPISHQ   24 (73)
T ss_dssp             CCCCCCSSCCSCSCSSCCSCCS
T ss_pred             hHHHHHHhcCCCCCCCCCcccc
Confidence            3779999999999999987544

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0022  Score=40.00  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             CCcceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCC
Q 027011            1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA   46 (229)
Q Consensus         1 ~~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~   46 (229)
                      ++.+.++|.+||+.|+.....+.|..+ -|++-       .+|+|+
T Consensus         1 s~~Kpy~C~~Cgk~F~~~~~L~~H~r~-~Ht~e-------kpy~C~   38 (39)
T d2epsa1           1 SVGKPYICQSCGKGFSRPDHLNGHIKQ-VHTSE-------RPHKCQ   38 (39)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHH-TSCCC-------CCCCSS
T ss_pred             CCCCCccCCCCCCCcCChHHhhccCcC-ccCCC-------cCcCCc
Confidence            367899999999999999999999887 67753       456664

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.00095  Score=43.16  Aligned_cols=39  Identities=23%  Similarity=0.565  Sum_probs=32.7

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC   52 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~~   52 (229)
                      +.|+| +||+.|......+.|...  |+.       ..+|.|+.||+.+
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~--Ht~-------ekpy~C~~C~k~F   40 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSM--HLG-------LRPYGCGVCGKKF   40 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHH--HSC-------CCSEECTTTSCEE
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhc--ccc-------ccCCcCCCcCCEe
Confidence            57999 599999999999999644  753       3689999999964

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0006  Score=57.70  Aligned_cols=42  Identities=7%  Similarity=-0.070  Sum_probs=35.3

Q ss_pred             cccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           59 DLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        59 ~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      ..+.|+..|.++|++|+|+.+||....    ..|+   |..|+.|||+.
T Consensus       180 ~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~  228 (347)
T d1nbfa_         180 QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE  228 (347)
T ss_dssp             ECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGG
T ss_pred             eeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeecccc
Confidence            578999999999999999999998763    5566   45688899986

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.008  Score=40.07  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=35.9

Q ss_pred             CCCHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          112 EVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       112 ~vd~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      +++.++|.+|-+ -|.+.-.|++||..++| |++.|++||-..
T Consensus         2 ~is~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~ekA~e~Lr~k   43 (54)
T d1efub3           2 EITASLVKELRERTGAGMMDCKKALTEANG-DIELAIENMRKS   43 (54)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            577888998875 49999999999999988 999999999753

>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0085  Score=37.31  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q 027011          117 LLKELEAMGFPVARATRALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       117 ~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~  151 (229)
                      .++.|..|||.++....||....+ ++|.|.+-|+
T Consensus         9 kidklca~gf~knavi~alssksw-dvetatelll   42 (42)
T d3e46a1           9 KIENLCAAGFDRNAVIVALSSKSW-DVETATELLL   42 (42)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHH
T ss_pred             HHHHHHHccccccceeeeeccCcc-chhhHHHhhC
Confidence            478899999999999999988766 9999998764

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.00091  Score=55.83  Aligned_cols=52  Identities=8%  Similarity=-0.085  Sum_probs=43.6

Q ss_pred             hccCCCCCCCCCCcccccccccccccccccchhhhccccccccc----Cccc---cCCcccccCCC
Q 027011           42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM  100 (229)
Q Consensus        42 ~l~C~~Cg~~~~~~~E~~~a~K~t~f~TFPd~Lvv~~~r~~l~~----P~Kl---v~~~e~lDls~  100 (229)
                      ...|+.|++.       ..+.++..|.++|++|+++.+||.+..    +.|+   |..|..||+..
T Consensus       199 ~~~~~~~~~~-------~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~  257 (383)
T d2ayna1         199 TKQSPTLQRN-------ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYE  257 (383)
T ss_dssp             CCEETTTTEE-------CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGG
T ss_pred             cccccccCcc-------eeeeeeeeeecccceeeeeccceeecccCcceeecCcEEccCCeeechh
Confidence            3579999886       678999999999999999999999875    6676   45677888875

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.49  E-value=0.01  Score=39.30  Aligned_cols=37  Identities=38%  Similarity=0.457  Sum_probs=31.1

Q ss_pred             HHHHHHH-hCCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          116 ELLKELE-AMGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       116 ~~l~qL~-eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      +.|.+|- .-|.+...|++||..+|| |++.|++||-..
T Consensus         4 elvK~LR~~Tga~~~dcKkAL~e~~g-D~ekA~e~Lr~~   41 (52)
T d1aipc1           4 ELIKKLREATGAGMMDVKRALEDAGW-DEEKAVQLLRER   41 (52)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            4566665 459999999999999988 999999999653

>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Trinucleotide repeat containing 6c protein, TNRC6C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.016  Score=40.50  Aligned_cols=40  Identities=38%  Similarity=0.592  Sum_probs=33.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          116 ELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       116 ~~l~qL~eMGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      -.+.|+..|||+++-+..||..+ +++++.|+-=|.+.--|
T Consensus        16 p~~KQfsnMGf~re~~e~~l~sN-~m~L~~a~~~l~dKk~e   55 (72)
T d2dkla1          16 RLIKQLTDMGFPREPAEEALKSN-NMNLDQAMSALLEKKVD   55 (72)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHT-TSCHHHHHHHHHTTSCC
T ss_pred             HHHHHHhhcCCcCCChHHhhhcc-Ccchhhcccchhhhhhc
Confidence            36899999999999999999875 67999999888765443

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.014  Score=38.93  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHhCCCCHHHHHHHHHHcCCC
Q 027011          111 PEVDKELLKELEAMGFPVARATRALHYSGNA  141 (229)
Q Consensus       111 ~~vd~~~l~qL~eMGF~~~~a~kAL~~Tgn~  141 (229)
                      .-+|.+.|.|..+||||++....+|+.-|=+
T Consensus         6 ~Gid~~~V~~f~~mGF~rdKvI~VLrrlgik   36 (55)
T d1ttea1           6 YGIDHDLIDEFESQGFEKDKIVEVLRRLGVK   36 (55)
T ss_dssp             CCCSHHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred             hCCCHHHHHHHHHcCCCchhHHHHHHHhCcC
Confidence            4589999999999999999999999997654

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.80  E-value=0.014  Score=39.12  Aligned_cols=39  Identities=28%  Similarity=0.583  Sum_probs=33.0

Q ss_pred             CHHHHHHHHh-CCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Q 027011          114 DKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH  153 (229)
Q Consensus       114 d~~~l~qL~e-MGF~~~~a~kAL~~Tgn~~~E~A~~WL~~h  153 (229)
                      +.++|.+|-+ -|.+.-.|++||..+|| |++.|++||-..
T Consensus         4 s~~lvk~LRe~Tga~~~dcKkAL~e~~g-D~ekA~e~Lrkk   43 (56)
T d1xb2b1           4 SKELLMKLRRKTGYSFINCKKALETCGG-DLKQAESWLHKQ   43 (56)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence            4567777764 49999999999999988 999999999753

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.027  Score=34.03  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=24.3

Q ss_pred             CCcceeeccccccccCCHHHHHHHHHH
Q 027011            1 MAGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         1 ~~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      |..+.++|+.||+.|......+.|...
T Consensus         4 TgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           4 TGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            457889999999999999999999865

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.015  Score=33.28  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             ceeeccccccccCCHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      +.|+|++|||.|+.......|-.
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCcc
Confidence            36899999999999988888854

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.021  Score=34.63  Aligned_cols=30  Identities=13%  Similarity=0.277  Sum_probs=25.7

Q ss_pred             CCcceeeccccccccCCHHHHHHHHHHhCCCC
Q 027011            1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHSN   32 (229)
Q Consensus         1 ~~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~n   32 (229)
                      |..+.|+|..||+.|+.....+.|. + -|++
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~-r-~Ht~   32 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHL-K-VHTD   32 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHH-G-GGTS
T ss_pred             CCCccccCCCCCCcccChHHHHHHc-c-ccCC
Confidence            4578899999999999999999996 4 4765

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.033  Score=33.23  Aligned_cols=27  Identities=15%  Similarity=0.352  Sum_probs=23.3

Q ss_pred             CCcceeeccccccccCCHHHHHHHHHH
Q 027011            1 MAGVSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         1 ~~~~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      |..++++|.+||+.|+.......|-..
T Consensus         3 Tgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           3 SGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            457899999999999999999999543

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.69  E-value=0.1  Score=37.84  Aligned_cols=40  Identities=30%  Similarity=0.371  Sum_probs=34.6

Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          116 ELLKELEAM-GFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       116 ~~l~qL~eM-GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      +.|.||++| |=+++.|.-||+-.++ ++++|+|.|++...|
T Consensus        34 ~kVkql~e~T~rsede~~~ALhDcn~-D~~~AIn~lLEg~~~   74 (91)
T d1wj7a1          34 EKVKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLEGNPD   74 (91)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHTCSSS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhcCCc-cHHHHHHHHHhcCCC
Confidence            568888887 7999999999999976 999999999987543

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.034  Score=33.86  Aligned_cols=26  Identities=19%  Similarity=0.484  Sum_probs=22.2

Q ss_pred             CCcceeeccccccccCCHHHHHHHHH
Q 027011            1 MAGVSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         1 ~~~~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      +..+.|+|++|||.|+.......|-.
T Consensus         8 t~ekpy~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2           8 RERRRYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCCCEecCCCCceeeCHHHHHHhCc
Confidence            34678999999999999999999854

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.046  Score=32.99  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=25.6

Q ss_pred             CCcceeeccccccccCCHHHHHHHHHHhCCC
Q 027011            1 MAGVSLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         1 ~~~~slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      |..+.++|..||+.|+.......|..+ -|+
T Consensus         4 TgekP~~C~~C~k~F~~~~~L~~H~~~-~H~   33 (36)
T d2ct1a2           4 SGEKPYECYICHARFTQSGTMKMHILQ-KHT   33 (36)
T ss_dssp             SCCCSEECTTTCCEESCHHHHHHHHHH-HSS
T ss_pred             CCCCCEeCCCCcccccchHHHHHHccc-ccC
Confidence            456789999999999999999999877 354

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.41  E-value=0.08  Score=31.93  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             CCcceeeccccccccCCHHHHHHHHH
Q 027011            1 MAGVSLKCGDCGALLRSVQEAQEHAE   26 (229)
Q Consensus         1 ~~~~slkC~~Cg~~L~~~~~aq~Ha~   26 (229)
                      |..+.|+|..||+.|......+.|-.
T Consensus         7 TgeKPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_           7 TGIKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             CCSSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCeEeCCCCCEecCHHHHHHHHh
Confidence            45688999999999999999999953

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.40  E-value=0.095  Score=30.07  Aligned_cols=24  Identities=13%  Similarity=0.254  Sum_probs=21.2

Q ss_pred             ceeeccccccccCCHHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      +.|+|.+|||.|+-......|...
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCC
Confidence            579999999999999999999654

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=90.25  E-value=0.1  Score=30.03  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             eeeccccccccCCHHHHHHHHHH
Q 027011            5 SLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      .++|+.||+.|.-....+.|...
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCCCCCCCCCCCCchHcccccCc
Confidence            58999999999999999999854

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=0.11  Score=29.98  Aligned_cols=24  Identities=13%  Similarity=0.357  Sum_probs=20.6

Q ss_pred             ceeeccccccccCCHHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      +.|+|++||+-|........|...
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CCEECCcCCCeecchHHhhhhcCc
Confidence            368899999999999999999764

>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Migration-inducing protein 19 NBR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.80  E-value=0.28  Score=30.51  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=27.5

Q ss_pred             CHHHHHHHHhCCCCHHHH-HHHHHHcCCCCHHHHHHHHH
Q 027011          114 DKELLKELEAMGFPVARA-TRALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       114 d~~~l~qL~eMGF~~~~a-~kAL~~Tgn~~~E~A~~WL~  151 (229)
                      ++.++++|.+|||.--+- .+-|.+.++ ++..+++=|.
T Consensus         2 ~~~lM~~L~EMGF~DR~lNq~LL~KH~~-nl~~vV~eLl   39 (41)
T d2cp8a1           2 TAALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELL   39 (41)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHhCcchhHHHHHHHHHccC-cHHHHHHHHH
Confidence            357899999999976555 566666655 8988887664

>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Sequestosome 1 (Sqstm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=0.14  Score=33.59  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             HHHHHHHhCCCCHHHH-HHHHHHcCCCCHHHHHHHHH
Q 027011          116 ELLKELEAMGFPVARA-TRALHYSGNANVEAAVNWVV  151 (229)
Q Consensus       116 ~~l~qL~eMGF~~~~a-~kAL~~Tgn~~~E~A~~WL~  151 (229)
                      +.+.|++.|||+-+-. ..-|..+.|-++.+|++=|.
T Consensus        12 ~al~qM~aMGFsneGGWLt~LL~skn~dI~~aLD~iq   48 (52)
T d2k0bx1          12 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ   48 (52)
T ss_dssp             HHHHHHHHHTCCCSSSCHHHHHHHTTSCHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCcchHHHHHHHHcCCCHHHHHHHHh
Confidence            6789999999998654 33444555668999988653

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.02  E-value=0.95  Score=30.04  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=33.9

Q ss_pred             CCCHHHHHHHHhC--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Q 027011          112 EVDKELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHEND  156 (229)
Q Consensus       112 ~vd~~~l~qL~eM--GF~~~~a~kAL~~Tgn~~~E~A~~WL~~h~dD  156 (229)
                      ...++.+++|.+|  .++++..+..|.+.++ +++.||+=|++-.++
T Consensus         7 ~~~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G-~vd~aid~LL~Msd~   52 (59)
T d1wgla_           7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGEE   52 (59)
T ss_dssp             SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSCC
T ss_pred             cCcHHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCC
Confidence            3567889999999  2345777777777766 999999999985443

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.97  E-value=0.29  Score=28.25  Aligned_cols=26  Identities=31%  Similarity=0.643  Sum_probs=22.3

Q ss_pred             eeccccccccCCHHHHHHHHHHhCCCC
Q 027011            6 LKCGDCGALLRSVQEAQEHAELTSHSN   32 (229)
Q Consensus         6 lkC~~Cg~~L~~~~~aq~Ha~~T~H~n   32 (229)
                      +-|.-|||.|++..++.+|.-. -|++
T Consensus         3 ftc~hcgkqlks~~gmkyhvma-dhn~   28 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA-NHNS   28 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH-HTCC
T ss_pred             eechhHHHHHhhccCceEEEee-cccC
Confidence            5699999999999999999876 5654

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=84.88  E-value=0.14  Score=32.63  Aligned_cols=37  Identities=19%  Similarity=0.484  Sum_probs=26.0

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      .+++|..||.+.....+.        -+-|++-.   .+++||.||.+
T Consensus         2 ~~y~C~~CgyiYd~~~Gd--------gt~Fe~LP---~dw~CP~C~a~   38 (45)
T d6rxna_           2 QKYVCNVCGYEYDPAEHD--------NVPFDQLP---DDWCCPVCGVS   38 (45)
T ss_dssp             CCEEETTTCCEECGGGGT--------TCCGGGSC---TTCBCTTTCCB
T ss_pred             CCeEeCCCCeEECcccCC--------CCCHHHCC---CCCCCcCCCCc
Confidence            368999999997655432        24466642   35899999975

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.80  E-value=0.41  Score=27.43  Aligned_cols=24  Identities=21%  Similarity=0.558  Sum_probs=18.9

Q ss_pred             ceeeccccccccCCHHHHHHHHHH
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAEL   27 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~   27 (229)
                      +.+.|+.||+.|.-+++-..|+..
T Consensus         2 kPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhh
Confidence            457888888888888888888754

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=81.14  E-value=0.058  Score=35.95  Aligned_cols=44  Identities=16%  Similarity=0.419  Sum_probs=27.1

Q ss_pred             ceeeccccccccCCHHHHHHHHHHhCCCCCCchhhhhhhccCCCCCCC
Q 027011            4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP   51 (229)
Q Consensus         4 ~slkC~~Cg~~L~~~~~aq~Ha~~T~H~nFse~~E~vl~l~C~~Cg~~   51 (229)
                      ++++|.+||.+-....+=..|... -.+.|.+-   -.+.+||.||.+
T Consensus         3 kky~C~~CgyiYdp~~Gd~~~gi~-pGT~F~~L---P~dw~CP~C~a~   46 (56)
T d1s24a_           3 LKWICITCGHIYDEALGDEAEGFT-PGTRFEDI---PDDWCCPDCGAT   46 (56)
T ss_dssp             CEEEETTTTEEEETTSCCTTTTCC-SCCCGGGC---CTTCCCSSSCCC
T ss_pred             ccEECCCCCcEECcccCCcccCcC-CCCChhhC---CCCCCCcCCCCc
Confidence            689999999996544322122222 23345554   235899999875

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.02  E-value=0.68  Score=29.86  Aligned_cols=27  Identities=22%  Similarity=0.553  Sum_probs=23.8

Q ss_pred             eeeccccccccCCHHHHHHHHHHhCCC
Q 027011            5 SLKCGDCGALLRSVQEAQEHAELTSHS   31 (229)
Q Consensus         5 slkC~~Cg~~L~~~~~aq~Ha~~T~H~   31 (229)
                      -|-|..|||+|.+......|-+.-|-+
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~t   32 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGVT   32 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCcc
Confidence            477999999999999999999986664