Citrus Sinensis ID: 027020

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MVLVNEQRKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFDKSQSEVE
Secondary Structure (PSIPRED)
ccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHEEEEEEEEccccccccccEEcccccEEHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccEEEccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mvlvneqrklsaslpLICRCIISCILVLLTQLTlslvprffaasPFIVQFALSGLVLLLVQTLCGWCRRLlgvcasapafvFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSimskdpglitnefphldklvegselgvdpdnenslsrKRVRYCKICKAhvegfdhhcpafgncigqnnYFLFIVLLVGFLATEASYVACSAqfvgksqnfdksqseve
Flexible Loop (DISEMBL)
MVLVNEQRKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVegselgvdpdnenslsrkRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVgksqnfdksqseve
Low Complexity Region (SEG)
MVLVNEQRKLSASLPLICRCIISCIlvlltqltlslvPRFFAASPFIVQFALSGlvlllvQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFDKSQSEVE
Disordered region (IsUnstruct)
***********ASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVE****************KRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVG*************
Disordered Region (DISOPRED)
*************LPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPH*D**VEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNF********
Disordered Region (DISEMBL)
********KLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGK************
Disordered Region (DISPRO)
*******RKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQN*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLVNEQRKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFDKSQSEVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q9NYG2	327	Palmitoyltransferase ZDHH	no	no	0.471	0.330	0.307	3e-08
Q8R173	299	Palmitoyltransferase ZDHH	yes	no	0.471	0.361	0.299	6e-08
P0CS66	776	Palmitoyltransferase AKR1	yes	no	0.550	0.162	0.275	6e-07
P0CS67	776	Palmitoyltransferase AKR1	N/A	no	0.550	0.162	0.275	6e-07
Q550R7	434	Putative ZDHHC-type palmi	yes	no	0.183	0.096	0.545	9e-07
Q2THX0	765	Probable palmitoyltransfe	no	no	0.262	0.078	0.417	1e-06
Q9ULC8	765	Probable palmitoyltransfe	no	no	0.262	0.078	0.417	1e-06
Q2THW8	765	Probable palmitoyltransfe	no	no	0.262	0.078	0.417	1e-06
Q5Y5T5	762	Probable palmitoyltransfe	no	no	0.244	0.073	0.410	2e-06
Q9M115	508	Probable S-acyltransferas	yes	no	0.240	0.108	0.328	3e-06

>sp|Q9NYG2|ZDHC3_HUMAN Palmitoyltransferase ZDHHC3 OS=Homo sapiens GN=ZDHHC3 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 97  RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI-----TNEFPHLDKLVEGSELGVDP 150
           R  V S+I G+ FN+   + +   C  M  DPG +     T EF    +L  G  +   P
Sbjct: 71  RDYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVPKGNATKEFIESLQLKPGQVVYKCP 130

Query: 151 DNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNN--YFLFIVLLVGFLATEA 205
               S+   R  +C +CK  +   DHHCP   NC+G+NN  YF+   + +  ++  A
Sbjct: 131 KC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVGENNQKYFVLFTMYIALISLHA 186

Palmitoyltransferase with broad specificity. Palmitoylates GABA receptors on their gamma subunit (GABRG1, GABRG2 and GABRG3), which regulates synaptic clustering and/or cell surface stability. Palmitoylates glutamate receptors GRIA1 and GRIA2, which leads to their retention in Golgi.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q8R173|ZDHC3_MOUSE Palmitoyltransferase ZDHHC3 OS=Mus musculus GN=Zdhhc3 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 97  RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI-----TNEFPHLDKLVEGSELGVDP 150
           R    S+I G+ FN+   + +   C  M  DPG +     T EF    +L  G  +   P
Sbjct: 71  RDYAYSIINGIVFNLLAFLALASHCRAMLTDPGAVPKGNATKEFIESLQLKPGQVVYKCP 130

Query: 151 DNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNN--YFLFIVLLVGFLATEA 205
               S+   R  +C +CK  +   DHHCP   NC+G+NN  YF+   + +  ++  A
Sbjct: 131 KC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVGENNQKYFVLFTMYIALISLHA 186

Palmitoyltransferase with broad specificity. Palmitoylates GABA receptors on their gamma subunit (GABRG1, GABRG2 and GABRG3), which regulates synaptic clustering and/or cell surface stability. Palmitoylates glutamate receptors GRIA1 and GRIA2, which leads to their retention in Golgi.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS66|AKR1_CRYNJ Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=AKR1 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 19/145 (13%)

Query: 87  FIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLC----SIMSKDPGLITN-----EFPH- 136
            IW  Y  + R AV++      N+   ++ +G C    + +  DPG +       E    
Sbjct: 381 LIWVGYCWISRFAVNTPGYAFSNLGFIIMFVGCCWTFWTAIVTDPGFVPKGQQDAEIKEV 440

Query: 137 LDKLVEGSELGVDPDNENSLSRK--RVRYCKICKAHVEGFDHHCPAFGNCIGQNN---YF 191
           L+ LV+   L         ++RK  R ++C+ C   V  FDHHCP   NC+G  N   + 
Sbjct: 441 LEDLVDAGRLNGTNFCIVCMARKPLRSKHCRTCNRCVARFDHHCPWIWNCVGAKNHRSFL 500

Query: 192 LFIVLLVG----FLATEASYVACSA 212
           LF++ L+G    F+    +Y+  +A
Sbjct: 501 LFVLFLIGGIILFIRLTIAYIQQNA 525

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS67|AKR1_CRYNB Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=AKR1 PE=3 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 19/145 (13%)

Query: 87  FIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLC----SIMSKDPGLITN-----EFPH- 136
            IW  Y  + R AV++      N+   ++ +G C    + +  DPG +       E    
Sbjct: 381 LIWVGYCWISRFAVNTPGYAFSNLGFIIMFVGCCWTFWTAIVTDPGFVPKGQQDAEIKEV 440

Query: 137 LDKLVEGSELGVDPDNENSLSRK--RVRYCKICKAHVEGFDHHCPAFGNCIGQNN---YF 191
           L+ LV+   L         ++RK  R ++C+ C   V  FDHHCP   NC+G  N   + 
Sbjct: 441 LEDLVDAGRLNGTNFCIVCMARKPLRSKHCRTCNRCVARFDHHCPWIWNCVGAKNHRSFL 500

Query: 192 LFIVLLVG----FLATEASYVACSA 212
           LF++ L+G    F+    +Y+  +A
Sbjct: 501 LFVLFLIGGIILFIRLTIAYIQQNA 525

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q550R7|ZDHC1_DICDI Putative ZDHHC-type palmitoyltransferase 1 OS=Dictyostelium discoideum GN=DDB_G0276997 PE=3 SV=3

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 160 RVRYCKICKAHVEGFDHHCPAFGNCIGQNNY--FLFIVLLVGFL 201
           R  +C IC   VE FDHHCP  GNCIG+ NY  FL+ +  +GFL
Sbjct: 127 RANHCGICNNCVERFDHHCPWVGNCIGRRNYQTFLYFLYSLGFL 170

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q2THX0|ZDHC8_PANTR Probable palmitoyltransferase ZDHHC8 OS=Pan troglodytes GN=ZDHHC8 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 160 RVRYCKICKAHVEGFDHHCPAFGNCIGQNNY---FLFIVLL----VGFLATEASYVACSA 212
           R  +C +C   VE FDHHCP   NCIG+ NY   FLF++ L    VG +A    YV   A
Sbjct: 116 RCSHCSVCDNCVEDFDHHCPWVNNCIGRRNYRYFFLFLLSLSAHMVGVVAFGLVYVLNHA 175

Query: 213 QFVGKSQ 219
           + +G + 
Sbjct: 176 EGLGAAH 182

Putative palmitoyltransferase involved in glutamatergic transmission.

Pan troglodytes (taxid: 9598)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ULC8|ZDHC8_HUMAN Probable palmitoyltransferase ZDHHC8 OS=Homo sapiens GN=ZDHHC8 PE=1 SV=3

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 160 RVRYCKICKAHVEGFDHHCPAFGNCIGQNNY---FLFIVLL----VGFLATEASYVACSA 212
           R  +C +C   VE FDHHCP   NCIG+ NY   FLF++ L    VG +A    YV   A
Sbjct: 116 RCSHCSVCDNCVEDFDHHCPWVNNCIGRRNYRYFFLFLLSLSAHMVGVVAFGLVYVLNHA 175

Query: 213 QFVGKSQ 219
           + +G + 
Sbjct: 176 EGLGAAH 182

Palmitoyltransferase involved in glutamatergic transmission. Mediates palmitoylation of ABCA1.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q2THW8|ZDHC8_CANFA Probable palmitoyltransferase ZDHHC8 OS=Canis familiaris GN=ZDHHC8 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 160 RVRYCKICKAHVEGFDHHCPAFGNCIGQNNY---FLFIVLL----VGFLATEASYVACSA 212
           R  +C +C   VE FDHHCP   NCIG+ NY   FLF++ L    VG +A    YV   A
Sbjct: 116 RCSHCSVCDNCVEDFDHHCPWVNNCIGRRNYRYFFLFLLSLSAHMVGVVAFGLVYVLNHA 175

Query: 213 QFVGKSQ 219
           + +G + 
Sbjct: 176 EGLGAAH 182

Putative palmitoyltransferase involved in glutamatergic transmission.

Canis familiaris (taxid: 9615)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q5Y5T5|ZDHC8_MOUSE Probable palmitoyltransferase ZDHHC8 OS=Mus musculus GN=Zdhhc8 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 160 RVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFV 215
           R  +C +C   VE FDHHCP   NCIG+ NY  F + L+   A     VA    +V
Sbjct: 116 RCSHCSVCDNCVEDFDHHCPWVNNCIGRRNYRYFFLFLLSLSAHMVGVVAFGLLYV 171

Palmitoyltransferase involved in glutamatergic transmission. Mediates palmitoylation of ABCA1.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q9M115|ZDH16_ARATH Probable S-acyltransferase At4g01730 OS=Arabidopsis thaliana GN=At4g01730 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 140 LVEGSELGVDPDNENSLS---------RKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNY 190
           + +   +  DP  E+ +S         ++  ++C+ C   VEGFDHHC    NC+G+ NY
Sbjct: 141 MKDDDSVTPDPKEEDDISYCSLCDLEVKRSSKHCRTCNRCVEGFDHHCRWLNNCVGKKNY 200

Query: 191 FLFI 194
             FI
Sbjct: 201 TTFI 204

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
297746095	311	unnamed protein product [Vitis vinifera]	1.0	0.736	0.541	4e-60
225434978	311	PREDICTED: probable S-acyltransferase At	0.991	0.729	0.510	8e-58
255585828	291	zinc finger protein, putative [Ricinus c	0.790	0.621	0.527	1e-52
357112878	313	PREDICTED: palmitoyltransferase ZDHHC17-	0.956	0.699	0.421	3e-43
449450714	209	PREDICTED: uncharacterized protein LOC10	0.820	0.899	0.478	7e-43
218192534	328	hypothetical protein OsI_10951 [Oryza sa	0.903	0.631	0.429	5e-42
115452213	299	Os03g0275400 [Oryza sativa Japonica Grou	0.895	0.685	0.429	3e-41
108707457	277	DHHC zinc finger domain containing prote	0.895	0.740	0.429	3e-41
222624656	370	hypothetical protein OsJ_10323 [Oryza sa	0.903	0.559	0.425	4e-41
226495287	315	DHHC zinc finger domain containing prote	0.960	0.698	0.381	4e-39

>gi|297746095|emb|CBI16151.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/229 (54%), Positives = 161/229 (70%)

Query: 1   MVLVNEQRKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLV 60
           M+++++Q+ +  SL LI RC+ISCI V LTQ  LS+VPRFFAAS  ++Q  LS L+LL++
Sbjct: 1   MLVLDDQKSMRISLKLIGRCMISCIFVFLTQFALSIVPRFFAASSLLIQLPLSALLLLVL 60

Query: 61  QTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLC 120
                 CRR LGV ASAPAFVFFN+LFIWG YI ++R+ +S L+G + N E+ M+IIGL 
Sbjct: 61  LGAGRCCRRFLGVYASAPAFVFFNLLFIWGVYIVILRKVISPLMGIVLNGEIVMLIIGLY 120

Query: 121 SIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPA 180
           SI+S DPG +T+     D   E S    +   E S S +RVRYCK CKA+V+GFDHHCPA
Sbjct: 121 SILSSDPGFVTSRSSCSDNHAEDSFSEDEAHFEGSFSSRRVRYCKSCKAYVKGFDHHCPA 180

Query: 181 FGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFDKSQSEVE 229
           FGNCIGQ N+ LF+VLLVGF+ TEASY+  S +F  K Q  D++  E  
Sbjct: 181 FGNCIGQKNHVLFMVLLVGFVITEASYIMDSFKFATKFQKMDETGQETS 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434978|ref|XP_002281137.1| PREDICTED: probable S-acyltransferase At2g14255-like [Vitis vinifera]

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 125/245 (51%), Positives = 164/245 (66%), Gaps = 18/245 (7%)

Query: 1   MVLVNEQRKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLV 60
           M+++++Q+ +  SL LI RC+ISCI V LTQ  LS+VPRFFAAS  ++Q  LS L+LL++
Sbjct: 1   MLVLDDQKSMRISLKLIGRCMISCIFVFLTQFALSIVPRFFAASSLLIQLPLSALLLLVL 60

Query: 61  QTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLC 120
                 CRR LGV ASAPAFVFFN+LFIWG YI ++R+ +S L+G + N E+ M+IIGL 
Sbjct: 61  LGAGRCCRRFLGVYASAPAFVFFNLLFIWGVYIVILRKVISPLMGIVLNGEIVMLIIGLY 120

Query: 121 SIMSKDPGLITN---------------EFPHLD--KLVEGSELGVDPDNENSLSRKRVRY 163
           SI+S DPG +T+               +  H +  K + G      P  E S S +RVRY
Sbjct: 121 SILSSDPGFVTSRSSCSDNHAEDSFSEDEAHFEILKTLTGGTCHEHP-TEGSFSSRRVRY 179

Query: 164 CKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFDK 223
           CK CKA+V+GFDHHCPAFGNCIGQ N+ LF+VLLVGF+ TEASY+  S +F  K Q  D+
Sbjct: 180 CKSCKAYVKGFDHHCPAFGNCIGQKNHVLFMVLLVGFVITEASYIMDSFKFATKFQKMDE 239

Query: 224 SQSEV 228
           +  E 
Sbjct: 240 TGQET 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585828|ref|XP_002533592.1| zinc finger protein, putative [Ricinus communis] gi|223526536|gb|EEF28797.1| zinc finger protein, putative [Ricinus communis]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 140/216 (64%), Gaps = 35/216 (16%)

Query: 4   VNEQRKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTL 63
           + ++R+  A LP   RC +S ILVLLTQ +LSL+PRFF+AS F++Q  LSG+V+L V   
Sbjct: 1   MQQERRKEALLPKFGRCTVSSILVLLTQFSLSLIPRFFSASSFLLQLTLSGIVVLFVLGF 60

Query: 64  CGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIM 123
             WCRRLLGV ASAPAFVF N+LFIW  Y  VVR AV   +  +F+ EV M+ IG     
Sbjct: 61  GRWCRRLLGVHASAPAFVFLNLLFIWSVYFCVVRPAVPFFMDAIFSGEVVMLFIG----- 115

Query: 124 SKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGN 183
             DP L+                            KRVRYCK CKA+V+GFDHHCPAFGN
Sbjct: 116 --DPLLL----------------------------KRVRYCKSCKAYVKGFDHHCPAFGN 145

Query: 184 CIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQ 219
           CIGQ+N+ LF+VLL+GFL+TEASY+ CS QFV  SQ
Sbjct: 146 CIGQSNHALFMVLLLGFLSTEASYIMCSLQFVRGSQ 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357112878|ref|XP_003558232.1| PREDICTED: palmitoyltransferase ZDHHC17-like [Brachypodium distachyon]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/223 (42%), Positives = 135/223 (60%), Gaps = 4/223 (1%)

Query: 7   QRKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGW 66
            R   +   ++   ++SC LVL +QL ++ VPRFF +   +    ++GLV L    +  +
Sbjct: 9   HRLRRSPWEVVLSALVSCGLVLFSQLAVATVPRFFPSLSLLAMLPVAGLVFLAAIVVGRF 68

Query: 67  CRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKD 126
            RR +GV ASAP FV FN+LF+WG YI V+R   SSL+  L N E A+++ GL  I+S D
Sbjct: 69  WRRFIGVAASAPLFVLFNVLFMWGVYIFVIRGDTSSLLDMLINAECALLLWGLYRILSGD 128

Query: 127 PGLITNEFPHLDKLVEGSELGVDP--DNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNC 184
           PG++  E   L++   G    VD    +E   S  RVR+C  CKA+V G+DHHCPAFGNC
Sbjct: 129 PGIVAYESSFLEE--AGCNDFVDAICSSEKHPSLSRVRHCNSCKANVRGYDHHCPAFGNC 186

Query: 185 IGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFDKSQSE 227
           IGQ N+ LFI LL GF+  E++Y  CS +++ +  N    ++E
Sbjct: 187 IGQKNHRLFIALLTGFVVAESTYTMCSTKYITRCINSGTIRTE 229

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450714|ref|XP_004143107.1| PREDICTED: uncharacterized protein LOC101221388 [Cucumis sativus]

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 128/188 (68%)

Query: 1   MVLVNEQRKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLV 60
           MV +++++K +    LI RCI+S +LVLLTQ T  LVP FF+   F +Q  LS ++LL V
Sbjct: 1   MVELHDRKKPAKWPDLIGRCIVSLLLVLLTQSTQFLVPHFFSDLSFFIQLLLSAVMLLTV 60

Query: 61  QTLCGWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLC 120
            +  GWCRRL+ + +SAPAFVFF++LF+W  YIAVVRQ  S L+  LFN ++ ++I GLC
Sbjct: 61  ASAAGWCRRLIRIRSSAPAFVFFSVLFVWLVYIAVVRQDASLLMNLLFNGQIILLIFGLC 120

Query: 121 SIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPA 180
            ++  DPGL+++     D + + S L +D  +++     R+R C ICK +V+GFDHHCPA
Sbjct: 121 RMLLSDPGLVSHSPSPSDAIPQSSVLEIDTHHQDIGLGDRLRCCPICKTYVKGFDHHCPA 180

Query: 181 FGNCIGQN 188
           FGNCI Q 
Sbjct: 181 FGNCIVQG 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192534|gb|EEC74961.1| hypothetical protein OsI_10951 [Oryza sativa Indica Group]

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 128/207 (61%)

Query: 21  IISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAF 80
           + SC L LL+QL +++VPR F +   +    ++G+V L V  +  + RR +GV ASAP F
Sbjct: 25  LASCGLTLLSQLAVAMVPRLFPSLSLLAMLPVAGVVFLAVIVVGRFWRRFIGVAASAPLF 84

Query: 81  VFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKL 140
           V FNILF+WG Y+ V+R   SSL+  + N E AM++ GL  I S DPG++T E    ++ 
Sbjct: 85  VLFNILFLWGVYVFVIRGGTSSLLDMVINAECAMLLFGLYRIFSGDPGIVTYESSFFEEA 144

Query: 141 VEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGF 200
                +     +E   S  RVR+C  CKA+V G+DHHCPAFGNCIGQ N+ LF+ LL GF
Sbjct: 145 GCKDFVEAICPSEKFSSLPRVRHCNCCKANVRGYDHHCPAFGNCIGQKNHRLFMALLTGF 204

Query: 201 LATEASYVACSAQFVGKSQNFDKSQSE 227
           +  E++Y  CS +++ +  N    +SE
Sbjct: 205 VVAESTYTMCSTKYITRCINSGTIRSE 231

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115452213|ref|NP_001049707.1| Os03g0275400 [Oryza sativa Japonica Group] gi|108707456|gb|ABF95251.1| DHHC zinc finger domain containing protein, expressed [Oryza sativa Japonica Group] gi|113548178|dbj|BAF11621.1| Os03g0275400 [Oryza sativa Japonica Group] gi|215767922|dbj|BAH00151.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 126/205 (61%)

Query: 23  SCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVF 82
           SC L LL+QL +++VPR F +   +    ++G+V L V  +  + RR +GV ASAP FV 
Sbjct: 27  SCGLTLLSQLAVAMVPRLFPSLSLLAMLPVAGVVFLAVIVVGRFWRRFIGVAASAPLFVL 86

Query: 83  FNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVE 142
           FNILF+WG Y+ V+R   SSL+  + N E AM++ GL  I S DPG++  E    ++   
Sbjct: 87  FNILFLWGVYVFVIRGGTSSLLDMVINAECAMLLFGLYRIFSGDPGIVIYESSFFEEAGC 146

Query: 143 GSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLA 202
              +     +E   S  RVR+C  CKA+V G+DHHCPAFGNCIGQ N+ LF+ LL GF+ 
Sbjct: 147 KDFVEAICPSEKFSSLPRVRHCNCCKANVRGYDHHCPAFGNCIGQKNHRLFMALLTGFVV 206

Query: 203 TEASYVACSAQFVGKSQNFDKSQSE 227
            E++Y  CS +++ +  N    +SE
Sbjct: 207 AESTYTMCSTKYITRCINSGTIRSE 231

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108707457|gb|ABF95252.1| DHHC zinc finger domain containing protein, expressed [Oryza sativa Japonica Group]

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 126/205 (61%)

Query: 23  SCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAFVF 82
           SC L LL+QL +++VPR F +   +    ++G+V L V  +  + RR +GV ASAP FV 
Sbjct: 27  SCGLTLLSQLAVAMVPRLFPSLSLLAMLPVAGVVFLAVIVVGRFWRRFIGVAASAPLFVL 86

Query: 83  FNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVE 142
           FNILF+WG Y+ V+R   SSL+  + N E AM++ GL  I S DPG++  E    ++   
Sbjct: 87  FNILFLWGVYVFVIRGGTSSLLDMVINAECAMLLFGLYRIFSGDPGIVIYESSFFEEAGC 146

Query: 143 GSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLA 202
              +     +E   S  RVR+C  CKA+V G+DHHCPAFGNCIGQ N+ LF+ LL GF+ 
Sbjct: 147 KDFVEAICPSEKFSSLPRVRHCNCCKANVRGYDHHCPAFGNCIGQKNHRLFMALLTGFVV 206

Query: 203 TEASYVACSAQFVGKSQNFDKSQSE 227
            E++Y  CS +++ +  N    +SE
Sbjct: 207 AESTYTMCSTKYITRCINSGTIRSE 231

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222624656|gb|EEE58788.1| hypothetical protein OsJ_10323 [Oryza sativa Japonica Group]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 127/207 (61%)

Query: 21  IISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWCRRLLGVCASAPAF 80
           + SC L LL+QL +++VPR F +   +    ++G+V L V  +  + RR +GV ASAP F
Sbjct: 25  LASCGLTLLSQLAVAMVPRLFPSLSLLAMLPVAGVVFLAVIVVGRFWRRFIGVAASAPLF 84

Query: 81  VFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKL 140
           V FNILF+WG Y+ V+R   SSL+  + N E AM++ GL  I S DPG++  E    ++ 
Sbjct: 85  VLFNILFLWGVYVFVIRGGTSSLLDMVINAECAMLLFGLYRIFSGDPGIVIYESSFFEEA 144

Query: 141 VEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGF 200
                +     +E   S  RVR+C  CKA+V G+DHHCPAFGNCIGQ N+ LF+ LL GF
Sbjct: 145 GCKDFVEAICPSEKFSSLPRVRHCNCCKANVRGYDHHCPAFGNCIGQKNHRLFMALLTGF 204

Query: 201 LATEASYVACSAQFVGKSQNFDKSQSE 227
           +  E++Y  CS +++ +  N    +SE
Sbjct: 205 VVAESTYTMCSTKYITRCINSGTIRSE 231

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226495287|ref|NP_001148505.1| DHHC zinc finger domain containing protein [Zea mays] gi|223945801|gb|ACN26984.1| unknown [Zea mays] gi|414866098|tpg|DAA44655.1| TPA: DHHC zinc finger domain containing protein [Zea mays]

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 129/220 (58%)

Query: 8   RKLSASLPLICRCIISCILVLLTQLTLSLVPRFFAASPFIVQFALSGLVLLLVQTLCGWC 67
           R+ S+   ++   + SC LVL +QL +++VPR F     +    ++GLV +    L    
Sbjct: 12  RRSSSQWEVLWSALASCGLVLFSQLAVAMVPRLFPFLSLLAMLPIAGLVFIAAIVLGRLW 71

Query: 68  RRLLGVCASAPAFVFFNILFIWGFYIAVVRQAVSSLIGGLFNIEVAMIIIGLCSIMSKDP 127
           RR +GV ASAP FV FNIL +WG Y+ V+R+  SSL+  L N E A+++ G   I+S DP
Sbjct: 72  RRFIGVAASAPLFVLFNILLLWGVYVFVIRRETSSLLDMLINAECALLLWGFYRILSGDP 131

Query: 128 GLITNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQ 187
           G++  +  +L++      +     +E      RVR C  CKA++ G+DHHCPAFG CIGQ
Sbjct: 132 GIVACDSSYLEEAGCKDFVEAIYSSEKLPMLSRVRQCTWCKANIRGYDHHCPAFGTCIGQ 191

Query: 188 NNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFDKSQSE 227
            N+ LF+ LL GF+  E++Y  CS +++ +  +    +SE
Sbjct: 192 KNHRLFMALLTGFVVAESTYTMCSTKYITRCISSGTIRSE 231

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
UNIPROTKB|Q08DX8	299	ZDHHC3 "Uncharacterized protei	0.572	0.438	0.297	4.4e-11
UNIPROTKB|F1SRC6	297	ZDHHC3 "Uncharacterized protei	0.572	0.441	0.290	5.5e-11
UNIPROTKB|E2QS45	298	ZDHHC3 "Uncharacterized protei	0.572	0.439	0.290	5.6e-11
UNIPROTKB|E2RND6	299	ZDHHC3 "Uncharacterized protei	0.572	0.438	0.290	5.7e-11
UNIPROTKB|E2RND4	327	ZDHHC3 "Uncharacterized protei	0.572	0.400	0.290	7.5e-11
UNIPROTKB|Q9NYG2	327	ZDHHC3 "Palmitoyltransferase Z	0.572	0.400	0.290	7.5e-11
UNIPROTKB|I3LD27	331	ZDHHC3 "Uncharacterized protei	0.572	0.395	0.290	7.8e-11
MGI|MGI:1926134	299	Zdhhc3 "zinc finger, DHHC doma	0.572	0.438	0.290	3.7e-10
RGD|1309041	299	Zdhhc3 "zinc finger, DHHC-type	0.572	0.438	0.283	6.4e-10
UNIPROTKB|F1MVC6	294	Bt.30403 "Uncharacterized prot	0.454	0.353	0.312	4.3e-09

UNIPROTKB|Q08DX8 ZDHHC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 42/141 (29%), Positives = 64/141 (45%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + +  R  V S+I GL FN+   + +   C  M  DPG + 
Sbjct:    47 CAIVTWFLVLYAEFVVLFVMLIPSRDYVYSVINGLVFNLLAFLALASHCRAMLTDPGAVP 106

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   107 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 165

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   166 ENNQKYFVLFTMYIALISLHA 186

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1SRC6 ZDHHC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 41/141 (29%), Positives = 64/141 (45%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + +  R  V S+I G+ FN+   + +   C  M  DPG + 
Sbjct:    46 CAIVTWFLVLYAEFVVLFVMLIPSRDYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVP 105

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   106 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 164

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   165 ENNQKYFVLFTMYIALISLHA 185

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2QS45 ZDHHC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 41/141 (29%), Positives = 64/141 (45%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + +  R  V S+I G+ FN+   + +   C  M  DPG + 
Sbjct:    46 CAIVTWFLVLYAEFVVLFVMLIPSRDYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVP 105

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   106 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 164

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   165 ENNQKYFVLFTMYIALISLHA 185

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RND6 ZDHHC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 41/141 (29%), Positives = 64/141 (45%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + +  R  V S+I G+ FN+   + +   C  M  DPG + 
Sbjct:    47 CAIVTWFLVLYAEFVVLFVMLIPSRDYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVP 106

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   107 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 165

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   166 ENNQKYFVLFTMYIALISLHA 186

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RND4 ZDHHC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 41/141 (29%), Positives = 64/141 (45%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + +  R  V S+I G+ FN+   + +   C  M  DPG + 
Sbjct:    47 CAIVTWFLVLYAEFVVLFVMLIPSRDYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVP 106

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   107 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 165

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   166 ENNQKYFVLFTMYIALISLHA 186

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9NYG2 ZDHHC3 "Palmitoyltransferase ZDHHC3" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 41/141 (29%), Positives = 64/141 (45%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + +  R  V S+I G+ FN+   + +   C  M  DPG + 
Sbjct:    47 CAIVTWFLVLYAEFVVLFVMLIPSRDYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVP 106

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   107 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 165

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   166 ENNQKYFVLFTMYIALISLHA 186

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|I3LD27 ZDHHC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 7.8e-11, P = 7.8e-11
 Identities = 41/141 (29%), Positives = 64/141 (45%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + +  R  V S+I G+ FN+   + +   C  M  DPG + 
Sbjct:    47 CAIVTWFLVLYAEFVVLFVMLIPSRDYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVP 106

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   107 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 165

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   166 ENNQKYFVLFTMYIALISLHA 186

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1926134 Zdhhc3 "zinc finger, DHHC domain containing 3" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 41/141 (29%), Positives = 63/141 (44%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + V  R    S+I G+ FN+   + +   C  M  DPG + 
Sbjct:    47 CAIVTWFLVLYAEFVVLFVMLVPSRDYAYSIINGIVFNLLAFLALASHCRAMLTDPGAVP 106

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   107 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 165

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   166 ENNQKYFVLFTMYIALISLHA 186

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006605 "protein targeting" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1309041 Zdhhc3 "zinc finger, DHHC-type containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 6.4e-10, P = 6.4e-10
 Identities = 40/141 (28%), Positives = 63/141 (44%)

Query:    74 CASAPAFVFFNILFIWGFYIAVV-RQAVSSLIGGL-FNIEVAMIIIGLCSIMSKDPGLI- 130
             CA    F+     F+  F + +  R    S+I G+ FN+   + +   C  M  DPG + 
Sbjct:    47 CAIVTWFLVLYAEFVVLFVMLIPSRDYAYSIINGIVFNLLAFLALASHCRAMLTDPGAVP 106

Query:   131 ----TNEFPHLDKLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIG 186
                 T EF    +L  G  +   P    S+   R  +C +CK  +   DHHCP   NC+G
Sbjct:   107 KGNATKEFIESLQLKPGQVVYKCPKC-CSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVG 165

Query:   187 QNN--YFLFIVLLVGFLATEA 205
             +NN  YF+   + +  ++  A
Sbjct:   166 ENNQKYFVLFTMYIALISLHA 186

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006605 "protein targeting" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IEA;ISO

GO:0018345 "protein palmitoylation" evidence=IEA;ISO

UNIPROTKB|F1MVC6 Bt.30403 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 35/112 (31%), Positives = 54/112 (48%)

Query:   101 SSLIGGLFNIEVAMIIIGLCSIMSKDPGLI-----TNEFPHLDKLVEGSELGVDPDNENS 155
             S++ G +F++ V + +   C  M  DPG +     T EF    +L  G  L   P    S
Sbjct:    75 SAINGIVFSVLVFLALASHCRAMLTDPGAVPKGNATKEFIESLQLTSGQVLYSCPKC-CS 133

Query:   156 LSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNN--YFLFIVLLVGFLATEA 205
             +   R  +C+ICK  +   DHHCP   NC+G+ N  YF+   + V  ++  A
Sbjct:   134 IKPDRAHHCRICKRCIRKMDHHCPWINNCVGEKNQKYFVLFTMYVALISLHA 185

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI1G66630.1 annotation not avaliable (320 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam01529	167	pfam01529, zf-DHHC, DHHC palmitoyltransferase	3e-11
COG5273	309	COG5273, COG5273, Uncharacterized protein containi	3e-08

>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 119 LCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLS-------RK--RVRYCKICKA 169
               +  DPG +       ++  +  E   + D E+ L         K  R  +C++C  
Sbjct: 4   YFKTIFTDPGYVPKNPTEKEQEKQPDEESEEGDEEDELKFCSTCNIIKPPRSHHCRVCNR 63

Query: 170 HVEGFDHHCPAFGNCIGQNNYFLFIVLLV 198
            V  FDHHCP   NCIG+ N+  F++ L+
Sbjct: 64  CVLRFDHHCPWLNNCIGRRNHKYFLLFLL 92

This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167

>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 160 RVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQ 213
           R  +C IC   V  FDHHCP   NC+G  NY  F   L+ +    A  V  S  
Sbjct: 122 RSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLL-YTILVALVVLLSTA 174

Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG1315	307	consensus Predicted DHHC-type Zn-finger protein [G	99.98
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	99.97
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	99.97
KOG1314	414	consensus DHHC-type Zn-finger protein [General fun	99.97
KOG1311	299	consensus DHHC-type Zn-finger proteins [General fu	99.97
KOG1312	341	consensus DHHC-type Zn-finger proteins [General fu	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
KOG1313	309	consensus DHHC-type Zn-finger proteins [General fu	99.94
KOG1311	299	consensus DHHC-type Zn-finger proteins [General fu	91.27
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	86.95
PRK04136	48	rpl40e 50S ribosomal protein L40e; Provisional	83.08
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	81.77
PTZ00303	1374	phosphatidylinositol kinase; Provisional	80.06

>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]

Probab=99.98  E-value=3.4e-33  Score=250.56  Aligned_cols=146  Identities=22%  Similarity=0.376  Sum_probs=114.9

Q ss_pred             hHhhhhccccccchhHHHHHHHHHhhhhhhhccc--------chhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027020           65 GWCRRLLGVCASAPAFVFFNILFIWGFYIAVVRQ--------AVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPH  136 (229)
Q Consensus        65 ~~~~r~~~~~~~~P~~v~~~~~~~w~~y~~~~~~--------~~~~~~~iif~~l~~l~~~~y~~~~~~dPG~vp~~~~~  136 (229)
                      +.++|   |   .|+ +++.....|.+|+++...        .......+.+..+.++..|+|++++++|||.+|....+
T Consensus         8 ~~~~r---~---~~~-~~i~~~~~~~yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~   80 (307)
T KOG1315|consen    8 SKCLR---W---IPV-LIILLVIGWTYYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRP   80 (307)
T ss_pred             hhhhc---c---hhh-eeeeeeEEEEEEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCC
Confidence            45555   4   554 445567788888877653        23455778899999999999999999999999977544


Q ss_pred             chhhhc------------------CCCCCCCCCCCCCCCCCCcccccccCccccccccccccccccccccchHHHHHHHH
Q 027020          137 LDKLVE------------------GSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLV  198 (229)
Q Consensus       137 ~~~~~~------------------~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWl~nCIG~~N~r~Fi~fL~  198 (229)
                      +.++++                  .++..++|++|+.+||+|||||+.|+|||+||||||||+|||||.+|||+|++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~  160 (307)
T KOG1315|consen   81 SVEDEDSLENGSDNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLF  160 (307)
T ss_pred             CcCccccccccCcccccceeeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHH
Confidence            322111                  12246899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 027020          199 GFLATEASYVACSAQFVGK  217 (229)
Q Consensus       199 ~~~l~~l~~~~~~~~~i~~  217 (229)
                      +..+......+.....+..
T Consensus       161 y~~l~~~~~lv~~~~~~~~  179 (307)
T KOG1315|consen  161 YTNLYSIYVLVTTLIGFTK  179 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887665554444443

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.97  E-value=7.1e-33  Score=228.46  Aligned_cols=108  Identities=22%  Similarity=0.328  Sum_probs=88.1

Q ss_pred             HHHHHHHhcCCCCCCCCCCCch----------------hhhcCCCCCCCCCCCCCCCCCCcccccccCcccccccccccc
Q 027020          117 IGLCSIMSKDPGLITNEFPHLD----------------KLVEGSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPA  180 (229)
Q Consensus       117 ~~y~~~~~~dPG~vp~~~~~~~----------------~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpW  180 (229)
                      ++|+++..+|||++|+....++                +..+...+.++|.+|+..||+|||||+.||+||.|+||||||
T Consensus         2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w   81 (174)
T PF01529_consen    2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW   81 (174)
T ss_pred             EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence            5788999999999998811110                001123357899999999999999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 027020          181 FGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFDKS  224 (229)
Q Consensus       181 l~nCIG~~N~r~Fi~fL~~~~l~~l~~~~~~~~~i~~~~~~~~~  224 (229)
                      +|||||++|||+|++|+++..++.+......+.++.........
T Consensus        82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (174)
T PF01529_consen   82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISF  125 (174)
T ss_pred             hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999888888777777665554433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=99.97  E-value=1.3e-31  Score=241.64  Aligned_cols=124  Identities=21%  Similarity=0.327  Sum_probs=101.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCc--hhh------hcCCCCCCCCCCCCCCCCCCcccccccCcc
Q 027020           99 AVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHL--DKL------VEGSELGVDPDNENSLSRKRVRYCKICKAH  170 (229)
Q Consensus        99 ~~~~~~~iif~~l~~l~~~~y~~~~~~dPG~vp~~~~~~--~~~------~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~C  170 (229)
                      .......+.+.+...+..+.|++.+.+|||+.+++....  ++.      .......++|.+|+.+||+|||||+.||+|
T Consensus        53 ~~~~~~~i~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~C  132 (309)
T COG5273          53 SLVVLFIILFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRC  132 (309)
T ss_pred             cchhhhhhhhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCccccceeccccccccCCCCccchhhcch
Confidence            445566677778888999999999999999999653221  111      122446899999999999999999999999


Q ss_pred             ccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 027020          171 VEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNFD  222 (229)
Q Consensus       171 V~r~DHHCpWl~nCIG~~N~r~Fi~fL~~~~l~~l~~~~~~~~~i~~~~~~~  222 (229)
                      |+||||||||+|||||++|||+|+.|+++.....+.++.....++....+..
T Consensus       133 V~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~  184 (309)
T COG5273         133 VLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIR  184 (309)
T ss_pred             hhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999998888877777776666554433

>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]

Probab=99.97  E-value=7.6e-32  Score=241.57  Aligned_cols=137  Identities=19%  Similarity=0.231  Sum_probs=104.0

Q ss_pred             hhhhccccccchhHHHHHHHHHhhhh--hhhc--ccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhc
Q 027020           67 CRRLLGVCASAPAFVFFNILFIWGFY--IAVV--RQAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVE  142 (229)
Q Consensus        67 ~~r~~~~~~~~P~~v~~~~~~~w~~y--~~~~--~~~~~~~~~iif~~l~~l~~~~y~~~~~~dPG~vp~~~~~~~~~~~  142 (229)
                      .+|++.|+|-+-+.+...+..+-.+.  .+..  ....+....+.|.....|.+++|+.+++++||++|+++.+++..++
T Consensus         9 ~rr~~hwGpi~alsiit~i~~~~~~~n~lww~p~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~   88 (414)
T KOG1314|consen    9 FRRFLHWGPITALSIITIITSTTGYMNSLWWFPLSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDE   88 (414)
T ss_pred             hhheeccccHHHHHHHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhH
Confidence            57888985533332222222222222  1211  1234556778888889999999999999999999999887644322


Q ss_pred             CCCCCCCCCCCCCCCCCCcccccccCccccccccccccccccccccchHHHHHHHHHHHHHHH
Q 027020          143 GSELGVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEA  205 (229)
Q Consensus       143 ~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWl~nCIG~~N~r~Fi~fL~~~~l~~l  205 (229)
                        ..-++|.+|+.+|+|||||||.|||||.+|||||||+|||||..||.+|..||++..++++
T Consensus        89 --~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~i  149 (414)
T KOG1314|consen   89 --MFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCI  149 (414)
T ss_pred             --HHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcc
Confidence              1246899999999999999999999999999999999999999999999999999888554

>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.97  E-value=6.7e-31  Score=235.47  Aligned_cols=109  Identities=25%  Similarity=0.289  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHh---cCCCCCCCCCCCchhhh---c---------CCCCCCCCCCCCCCCCCCcccccccCccc
Q 027020          107 LFNIEVAMIIIGLCSIMS---KDPGLITNEFPHLDKLV---E---------GSELGVDPDNENSLSRKRVRYCKICKAHV  171 (229)
Q Consensus       107 if~~l~~l~~~~y~~~~~---~dPG~vp~~~~~~~~~~---~---------~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV  171 (229)
                      ...++....+.....+..   +|||.+|++.+...+..   .         .+.+.++|++|+.+||+|||||+.||+||
T Consensus        58 ~~~if~~~~~~~~~~~~~~~~sdpg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV  137 (299)
T KOG1311|consen   58 LGAIFFLLNILNLMLACFRMLSDPGIVPRADDEQIEDPERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCV  137 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCceecCcccCCCCCccccccCCCcccCCcccceEEcCcCcccCCCCcccchhhcccc
Confidence            333444444444444444   49999999632111110   0         01246899999999999999999999999


Q ss_pred             cccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027020          172 EGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFV  215 (229)
Q Consensus       172 ~r~DHHCpWl~nCIG~~N~r~Fi~fL~~~~l~~l~~~~~~~~~i  215 (229)
                      +||||||||+|||||+||||+|+.|++++.++.+......+.++
T Consensus       138 ~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~  181 (299)
T KOG1311|consen  138 LRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYEL  181 (299)
T ss_pred             cccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987777776555444443

>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.95  E-value=1.1e-28  Score=216.52  Aligned_cols=112  Identities=26%  Similarity=0.320  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhh--h--cCCC-CCCCCCCCCCCCCCCcccccccCcccccccccc
Q 027020          104 IGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKL--V--EGSE-LGVDPDNENSLSRKRVRYCKICKAHVEGFDHHC  178 (229)
Q Consensus       104 ~~iif~~l~~l~~~~y~~~~~~dPG~vp~~~~~~~~~--~--~~~~-~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHC  178 (229)
                      .-+.-....++-.+++..+..+|||.+.++.+.....  .  +.-+ ..+.|+||+.+||.|||||+.|||||+|+||||
T Consensus       100 ~~il~~l~vivp~i~f~ltc~snpg~i~k~n~s~~~~~ypYDy~if~k~~kCSTCki~KPARSKHCsiCNrCV~rfDHHC  179 (341)
T KOG1312|consen  100 YLILPYLLVIVPLIFFTLTCGSNPGIITKANESLFLHVYPYDYVIFPKNVKCSTCKIRKPARSKHCSICNRCVHRFDHHC  179 (341)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCCCccchhhhccceeccCccceeecCCCccccccCCCccccccchHHHHHHHHhccce
Confidence            3344444556667788889999999999875533211  1  1112 347899999999999999999999999999999


Q ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027020          179 PAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVG  216 (229)
Q Consensus       179 pWl~nCIG~~N~r~Fi~fL~~~~l~~l~~~~~~~~~i~  216 (229)
                      .|+|||||++|.|||++|+++. +....+.+....|+.
T Consensus       180 iWiNNCIG~~N~ryF~lFLL~~-i~l~~yaivrlgfi~  216 (341)
T KOG1312|consen  180 IWINNCIGAWNIRYFLLFLLTL-ISLATYAIVRLGFIV  216 (341)
T ss_pred             EeeecccccchHHHHHHHHHHH-HHHHHHHHHHHHhee
Confidence            9999999999999999999987 556666666666663

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=3.7e-28  Score=231.07  Aligned_cols=145  Identities=23%  Similarity=0.338  Sum_probs=116.2

Q ss_pred             chh-HHHHHHHHHhhhhhhhcc--cchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCchhhhc-------CCCC
Q 027020           77 APA-FVFFNILFIWGFYIAVVR--QAVSSLIGGLFNIEVAMIIIGLCSIMSKDPGLITNEFPHLDKLVE-------GSEL  146 (229)
Q Consensus        77 ~P~-~v~~~~~~~w~~y~~~~~--~~~~~~~~iif~~l~~l~~~~y~~~~~~dPG~vp~~~~~~~~~~~-------~~~~  146 (229)
                      .|+ ..++.+..+|.++.|...  +...+.....+.+.....++.+.+...+|||++|...+...+...       .+.+
T Consensus       340 ~~~~~~~~~~~~fw~~~~w~~~i~~~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~~~~~~tIs~l~d~gkf~~e  419 (600)
T KOG0509|consen  340 PPLLSGFFLSTLFWFYYFWFSKITPYTLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTSTEVGRETISQLIDFGKFDLE  419 (600)
T ss_pred             chhHHHHHHHHHHHHHHhhheeccchhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHhhcccccccc
Confidence            444 567778888988887652  234455666666667777788888888999999988765533211       1223


Q ss_pred             CCCCCCCCCCCCCCcccccccCccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 027020          147 GVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFVGKSQNF  221 (229)
Q Consensus       147 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWl~nCIG~~N~r~Fi~fL~~~~l~~l~~~~~~~~~i~~~~~~  221 (229)
                      +++|.+|.++||.|||||+.|||||.||||||||++||||.+|||+|+.|++++...+.+++.....|+....+.
T Consensus       420 n~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~  494 (600)
T KOG0509|consen  420 NRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENA  494 (600)
T ss_pred             ccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            369999999999999999999999999999999999999999999999999999998888888888888765554

>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.94  E-value=2.4e-27  Score=206.95  Aligned_cols=69  Identities=25%  Similarity=0.387  Sum_probs=63.1

Q ss_pred             CCCCCCCCCCCCCCcccccccCccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027020          147 GVDPDNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIGQNNYFLFIVLLVGFLATEASYVACSAQFV  215 (229)
Q Consensus       147 ~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DHHCpWl~nCIG~~N~r~Fi~fL~~~~l~~l~~~~~~~~~i  215 (229)
                      ..+|.+|+.+||||+|||+.|||||+||||||||+|||||.+|||||++|++++.++....++...+.+
T Consensus       102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w  170 (309)
T KOG1313|consen  102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTW  170 (309)
T ss_pred             ccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999988766544333

>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=91.27  E-value=0.27  Score=44.06  Aligned_cols=41  Identities=17%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             cccccccCccccccccccccccccccccch-----------HHHHHHHHHHH
Q 027020          161 VRYCKICKAHVEGFDHHCPAFGNCIGQNNY-----------FLFIVLLVGFL  201 (229)
Q Consensus       161 s~HC~~C~~CV~r~DHHCpWl~nCIG~~N~-----------r~Fi~fL~~~~  201 (229)
                      .|+|..|+..+.++-|||+.-|+||-+.=|           |.+-.|+.++.
T Consensus       113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~  164 (299)
T KOG1311|consen  113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF  164 (299)
T ss_pred             eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence            688888888888888888888888877655           47778875544

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.95  E-value=2  Score=34.86  Aligned_cols=32  Identities=9%  Similarity=-0.074  Sum_probs=28.4

Q ss_pred             CCCCCCCCCCCCCCCCcccccccCcccccccc
Q 027020          145 ELGVDPDNENSLSRKRVRYCKICKAHVEGFDH  176 (229)
Q Consensus       145 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~r~DH  176 (229)
                      .....|+.|+.-...+-|||..-|.||.+..|
T Consensus        60 ~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~   91 (174)
T PF01529_consen   60 PRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH   91 (174)
T ss_pred             CcceeccccccccccccccchhhccccccccH
Confidence            35678999999999999999999999998877

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional

Probab=83.08  E-value=0.64  Score=30.92  Aligned_cols=25  Identities=16%  Similarity=-0.001  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCCCCCCCcccccccCc
Q 027020          145 ELGVDPDNENSLSRKRVRYCKICKA  169 (229)
Q Consensus       145 ~~~~~C~~C~~~kP~Rs~HC~~C~~  169 (229)
                      ....+|..|..+-|+|+..|+.||.
T Consensus        12 ~~k~ICrkC~ARnp~~A~~CRKCg~   36 (48)
T PRK04136         12 FNKKICMRCNARNPWRATKCRKCGY   36 (48)
T ss_pred             hcccchhcccCCCCccccccccCCC
Confidence            3457899999999999999999875

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=81.77  E-value=0.94  Score=25.40  Aligned_cols=21  Identities=14%  Similarity=0.298  Sum_probs=18.1

Q ss_pred             CCCCCCCCCCCCcccccccCc
Q 027020          149 DPDNENSLSRKRVRYCKICKA  169 (229)
Q Consensus       149 ~C~~C~~~kP~Rs~HC~~C~~  169 (229)
                      +|+.|...-++.++.|+.||.
T Consensus         1 ~Cp~CG~~~~~~~~fC~~CG~   21 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCPNCGT   21 (23)
T ss_pred             CCcccCCCCCCcCcchhhhCC
Confidence            588898888899999999875

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=80.06  E-value=1.2  Score=45.50  Aligned_cols=22  Identities=14%  Similarity=0.166  Sum_probs=18.1

Q ss_pred             CCCCCCCCCCC-------CCcccccccCc
Q 027020          148 VDPDNENSLSR-------KRVRYCKICKA  169 (229)
Q Consensus       148 ~~C~~C~~~kP-------~Rs~HC~~C~~  169 (229)
                      +.|..|+..-.       .|-||||.||+
T Consensus       461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr  489 (1374)
T PTZ00303        461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI  489 (1374)
T ss_pred             CcccCcCCcccccccccccccccccCCcc
Confidence            56999987664       38999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	85.11
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	81.79
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	80.38

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=85.11  E-value=0.63  Score=33.07  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             CCCCCCCCCCCCC--CCCCcccccccCccc
Q 027020          144 SELGVDPDNENSL--SRKRVRYCKICKAHV  171 (229)
Q Consensus       144 ~~~~~~C~~C~~~--kP~Rs~HC~~C~~CV  171 (229)
                      +.+...|..|...  --.|-|||+.||+-+
T Consensus        18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~   47 (84)
T 1z2q_A           18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVL   47 (84)
T ss_dssp             TTTCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred             CCCCCCCcCcCCccccchhcccccCCCcEE
Confidence            4455678888752  346789999998754

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.79  E-value=1.1  Score=31.80  Aligned_cols=28  Identities=14%  Similarity=0.116  Sum_probs=19.7

Q ss_pred             CCCCCCCCCCCC--CCCCCcccccccCccc
Q 027020          144 SELGVDPDNENS--LSRKRVRYCKICKAHV  171 (229)
Q Consensus       144 ~~~~~~C~~C~~--~kP~Rs~HC~~C~~CV  171 (229)
                      +.+...|..|..  -.-.|-|||+.||+-+
T Consensus        11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vf   40 (84)
T 1x4u_A           11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSF   40 (84)
T ss_dssp             CCCCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred             CCCCCcCcCcCCccccchhhhhhcCCCcEE
Confidence            334567888875  2356889999998743

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=80.38  E-value=0.92  Score=32.05  Aligned_cols=28  Identities=11%  Similarity=0.186  Sum_probs=19.7

Q ss_pred             CCCCCCCCCCCC--CCCCCcccccccCccc
Q 027020          144 SELGVDPDNENS--LSRKRVRYCKICKAHV  171 (229)
Q Consensus       144 ~~~~~~C~~C~~--~kP~Rs~HC~~C~~CV  171 (229)
                      +.+...|..|..  ---.|-|||+.||+-+
T Consensus        16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~   45 (82)
T 2yw8_A           16 DDEATHCRQCEKEFSISRRKHHCRNCGHIF   45 (82)
T ss_dssp             CCCCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred             CccCCcccCcCCcccCccccccCCCCCCEE
Confidence            344567888875  2346789999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00