Citrus Sinensis ID: 027029

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLwdafsdggeaeEFEEVEKKLDADFkanagatkegskaddeLKKQRRPFLLQFFSPIFLKAFSITffgewgdksqlatiglaadenpfgVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQsflspvks
Flexible Loop (DISEMBL)
mssvvqgfTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAdfkanagatkegskaddelKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIqsflspvks
Low Complexity Region (SEG)
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGeaeefeeveKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Disordered region (IsUnstruct)
******GFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSD****************************************PFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL*****
Disordered Region (DISOPRED)
***VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA********************************************FLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK*
Disordered Region (DISEMBL)
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANA************LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Disordered Region (DISPRO)
*SSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGG***********************************QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q9C6M1	230	GDT1-like protein 4 OS=Ar	yes	no	1.0	0.995	0.795	4e-97
Q9SX28	228	GDT1-like protein 5 OS=Ar	no	no	0.995	1.0	0.781	8e-95
B9G125	232	GDT1-like protein 5 OS=Or	yes	no	0.973	0.961	0.748	3e-90
Q2R4J1	279	GDT1-like protein 3 OS=Or	no	no	0.886	0.727	0.453	1e-43
A2ZE50	279	GDT1-like protein 3 OS=Or	N/A	no	0.886	0.727	0.453	1e-43
Q93Y38	293	GDT1-like protein 3 OS=Ar	no	no	0.912	0.713	0.436	2e-42
Q6ZIB9	282	GDT1-like protein 4 OS=Or	no	no	0.899	0.730	0.442	3e-42
A2YXC7	281	GDT1-like protein 4 OS=Or	N/A	no	0.899	0.733	0.442	3e-42
Q9HC07	324	Transmembrane protein 165	yes	no	0.938	0.663	0.423	2e-41
P52875	323	Transmembrane protein 165	yes	no	0.938	0.665	0.420	1e-37

>sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1

 Score =  353 bits (907), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/230 (79%), Positives = 204/230 (88%), Gaps = 1/230 (0%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSSV+QGFTKSLAMT +SEIGDKTFFAAAILAMR+PRRLVL+GCL ALIVMTILSA +GW
Sbjct: 1   MSSVLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGE-AEEFEEVEKKLDADFKANAGATK 119
            APNLISRK THHITT+LFFGFGLWSLWD F +GG  +EE  EVE +LDAD KAN  + K
Sbjct: 61  AAPNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPK 120

Query: 120 EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLG 179
           + SK +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAADENPFGVVLG
Sbjct: 121 DSSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLG 180

Query: 180 GIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 229
           G++ Q LCTTAAVIGGKSLASQISE+IVALSGG+LFI+FGIQS+L+ V++
Sbjct: 181 GVVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVEA 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=2 SV=1

 Score =  346 bits (888), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 198/229 (86%), Gaps = 1/229 (0%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           M S++QGFTKSLAMT LSEIGDKTFFAAAILAMR+PRRLVL+GCL ALIVMTILSA +GW
Sbjct: 1   MGSLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISRK THHITT LFFGFGLWSLWD F +GG +EE  EVE +LD+D K     +K 
Sbjct: 61  AAPNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDLKKTNDQSKN 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
            SK +DE KKQ+RPFL  FFSPIFLKAFSI FFGEWGDKSQLATIGLAADENP GVVLGG
Sbjct: 121 -SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGG 179

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 229
           I+ Q LCTTAAV+GGKSLASQISE+IVALSGG+LFI+FGIQS L+PV +
Sbjct: 180 IVAQTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVDA 228

Arabidopsis thaliana (taxid: 3702)

>sp|B9G125|GDT15_ORYSJ GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1

 Score =  330 bits (847), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/223 (74%), Positives = 198/223 (88%)

Query: 3   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
           S++ GFTKSLAMTVLSEIGDKTFFAAAILAMR+PR+LVL+GCL +L VMT LS  +GWVA
Sbjct: 4   SLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVA 63

Query: 63  PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGS 122
           PNLISRK THH+TT+LFF FG+ SLW+ F + G++EE  EVE +LDA+FK+N   +K  S
Sbjct: 64  PNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSEELAEVEAELDANFKSNKAESKSKS 123

Query: 123 KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 182
           KA+D+ KKQ+RPF+LQFFSPIF+KAFSITFFGEWGDKSQ+ATIGLAADENPFGVVLGG++
Sbjct: 124 KANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGVL 183

Query: 183 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 225
            QALCTTAAV+GGKSLASQISEK+V LS GVLF++FGI S+LS
Sbjct: 184 AQALCTTAAVMGGKSLASQISEKMVGLSSGVLFLLFGIMSYLS 226

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1

 Score =  176 bits (445), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 136/216 (62%), Gaps = 13/216 (6%)

Query: 11  SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKL 70
           SL+M ++SEIGD+TF  AA++AMRHP+ +VLSG L AL VMT+LS  +G + PNLISRK 
Sbjct: 75  SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134

Query: 71  THHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK 130
           T+   TVL+  FGL  L+ A+    +  + +E+E+  +                    K 
Sbjct: 135 TNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLESGQG-------------KS 181

Query: 131 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTA 190
             R F  +F +PIFL+AF +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +CT+ 
Sbjct: 182 TLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSL 241

Query: 191 AVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226
           AVIGG  LAS+IS++ VA  GGVLF+ F + S+  P
Sbjct: 242 AVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1

 Score =  176 bits (445), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 136/216 (62%), Gaps = 13/216 (6%)

Query: 11  SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKL 70
           SL+M ++SEIGD+TF  AA++AMRHP+ +VLSG L AL VMT+LS  +G + PNLISRK 
Sbjct: 75  SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134

Query: 71  THHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK 130
           T+   TVL+  FGL  L+ A+    +  + +E+E+  +                    K 
Sbjct: 135 TNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLESGQG-------------KS 181

Query: 131 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTA 190
             R F  +F +PIFL+AF +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +CT+ 
Sbjct: 182 TLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSL 241

Query: 191 AVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226
           AVIGG  LAS+IS++ VA  GGVLF+ F + S+  P
Sbjct: 242 AVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 136/227 (59%), Gaps = 18/227 (7%)

Query: 3   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
           SV      S +M +++EIGD+TF  AA++AMRHP+  VLSG L AL VMTILS  +G + 
Sbjct: 80  SVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGRIV 139

Query: 63  PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGS 122
           PNLISRK T+   TVL+  FGL  L+ A+                  D K+N     E  
Sbjct: 140 PNLISRKHTNSAATVLYAFFGLRLLYIAWRS---------------TDSKSNQKKEMEEV 184

Query: 123 KADDELKKQRRPF---LLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLG 179
           +   E  + + PF     +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G
Sbjct: 185 EEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIG 244

Query: 180 GIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226
             IG  +CT+ AV+GG  LAS+IS++ VA  GG+LF+ F + S+  P
Sbjct: 245 ASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYP 291

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 136/219 (62%), Gaps = 13/219 (5%)

Query: 8   FTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLIS 67
           F  SL+M ++SEIGD+TF  AA++AMRHP+  VLSG L AL+VMTILS  +G + PNLIS
Sbjct: 75  FFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLIS 134

Query: 68  RKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDE 127
           RK T+   TVL+  FGL  L+ A+    +A + +E+E+  +                   
Sbjct: 135 RKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQG------------ 182

Query: 128 LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALC 187
            K   R    +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +C
Sbjct: 183 -KSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTIC 241

Query: 188 TTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226
           T+ AV+GG  LAS+IS+  VA  GG+LF+ F + S+  P
Sbjct: 242 TSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFYP 280

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 136/219 (62%), Gaps = 13/219 (5%)

Query: 8   FTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLIS 67
           F  SL+M ++SEIGD+TF  AA++AMRHP+  VLSG L AL+VMTILS  +G + PNLIS
Sbjct: 74  FFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLIS 133

Query: 68  RKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDE 127
           RK T+   TVL+  FGL  L+ A+    +A + +E+E+  +                   
Sbjct: 134 RKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQG------------ 181

Query: 128 LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALC 187
            K   R    +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +C
Sbjct: 182 -KSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTIC 240

Query: 188 TTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226
           T+ AV+GG  LAS+IS+  VA  GG+LF+ F + S+  P
Sbjct: 241 TSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFYP 279

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 146/234 (62%), Gaps = 19/234 (8%)

Query: 5   VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
           +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct: 94  IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 152

Query: 65  LISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE---KKLDADFKAN---- 114
           +I R  T++++TVLF  FG+  L +      D G+ EE EEV+   KK D +F+      
Sbjct: 153 VIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQ-EELEEVQAELKKKDEEFQRTKLLN 211

Query: 115 -AGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP 173
             G  + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P
Sbjct: 212 GPGDVETGTSITVPQKK-----WLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDP 266

Query: 174 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 226
           +GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct: 267 YGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320

Homo sapiens (taxid: 9606)

>sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/233 (42%), Positives = 145/233 (62%), Gaps = 18/233 (7%)

Query: 5   VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
           +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct: 94  IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATT 152

Query: 65  LISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE---KKLDADFKA----N 114
           +I R  T++++T LF  FG+  L +      D G+ EE EEV+   KK D +F+     N
Sbjct: 153 VIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQ-EELEEVQAELKKKDEEFQRTKLLN 211

Query: 115 AGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPF 174
               + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+
Sbjct: 212 GPDVETGTSTAIPQKK-----WLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPY 266

Query: 175 GVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 226
           GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct: 267 GVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
255576513	228	Transmembrane protein TPARL, putative [R	0.995	1.0	0.881	1e-107
449465635	230	PREDICTED: GDT1-like protein 4-like [Cuc	0.986	0.982	0.827	1e-104
224108528	228	predicted membrane protein [Populus tric	0.995	1.0	0.864	1e-103
356575520	229	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.829	1e-103
224127069	228	predicted membrane protein [Populus tric	0.995	1.0	0.864	1e-103
351725019	229	uncharacterized protein LOC100527455 [Gl	1.0	1.0	0.820	1e-102
224101691	224	predicted membrane protein [Populus tric	0.978	1.0	0.866	1e-101
388491688	229	unknown [Lotus japonicus]	1.0	1.0	0.807	1e-101
225423915	230	PREDICTED: GDT1-like protein 4 [Vitis vi	0.991	0.986	0.859	1e-101
357147867	232	PREDICTED: GDT1-like protein 5-like isof	0.973	0.961	0.780	5e-97

>gi|255576513|ref|XP_002529148.1| Transmembrane protein TPARL, putative [Ricinus communis] gi|223531427|gb|EEF33261.1| Transmembrane protein TPARL, putative [Ricinus communis]

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/228 (88%), Positives = 214/228 (93%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSS+VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSAVVGW
Sbjct: 1   MSSLVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAVVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNL+SR  THHITT+LFFGFG+WSLWD F+D GEAEE  EVE KLDAD+KAN G TK+
Sbjct: 61  AAPNLLSRTWTHHITTLLFFGFGIWSLWDGFTDKGEAEELAEVEAKLDADWKANKGTTKD 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
           G+KADDELKKQRRPFL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVVLGG
Sbjct: 121 GAKADDELKKQRRPFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 228
           I+GQALCTTAAV+GGKSLASQISEKIVALSGGVLFI+FGIQSFLS V+
Sbjct: 181 IVGQALCTTAAVVGGKSLASQISEKIVALSGGVLFIIFGIQSFLSTVE 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465635|ref|XP_004150533.1| PREDICTED: GDT1-like protein 4-like [Cucumis sativus]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/226 (82%), Positives = 203/226 (89%)

Query: 2   SSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWV 61
           +SV+QGFTKSLAMTVLSEIGDKTFFAAAI+AMRHPRRLVLSGC+ ALIVMT LS +VGW 
Sbjct: 3   TSVIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCMTALIVMTALSVLVGWA 62

Query: 62  APNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEG 121
           APNLISRK  HHITT+LF GFGLWSLWDAF D GE+EE  EVE KLDADFKAN   +K+G
Sbjct: 63  APNLISRKWAHHITTLLFLGFGLWSLWDAFHDEGESEELAEVEAKLDADFKANKKGSKDG 122

Query: 122 SKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGI 181
           +K DD++KK  R  LLQF SPI+LKAFSITFFGEWGDKSQLATIGLAADENP GVVLGGI
Sbjct: 123 NKDDDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADENPLGVVLGGI 182

Query: 182 IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 227
           +GQALCTTAAV+GG+SLASQISEKIVALSGGVLFIVFGIQSFLS V
Sbjct: 183 LGQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTV 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108528|ref|XP_002314881.1| predicted membrane protein [Populus trichocarpa] gi|222863921|gb|EEF01052.1| predicted membrane protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/228 (86%), Positives = 207/228 (90%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           M+SV QGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSA+VGW
Sbjct: 1   MTSVAQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAIVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT+LFFGFG WSLWD F+D GEAEE  EVE KLDAD+KAN G TK 
Sbjct: 61  AAPNLISRTWTHHITTILFFGFGFWSLWDGFNDKGEAEELAEVEAKLDADWKANTGTTKG 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
           GSK DDELKK+RRPFL Q FSPI LKAFSITFFGEWGDKSQ+ATIGLAADENP GVVLGG
Sbjct: 121 GSKDDDELKKRRRPFLSQLFSPILLKAFSITFFGEWGDKSQIATIGLAADENPLGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 228
           I+GQALCTTAAV GGKSLASQISEKIVALSGGVLFI+FGIQSFLS V+
Sbjct: 181 IVGQALCTTAAVFGGKSLASQISEKIVALSGGVLFIIFGIQSFLSTVE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575520|ref|XP_003555888.1| PREDICTED: uncharacterized protein LOC100527757 [Glycine max]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/229 (82%), Positives = 204/229 (89%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSS+VQGFTKSLAMT+LSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILS +VGW
Sbjct: 1   MSSIVQGFTKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSVLVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT LF GFGLWSL DA  + G+AEE  EVE KLD D+KA+ GATK 
Sbjct: 61  AAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEEGDAEELAEVEAKLDKDWKASNGATKN 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
            +K DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 229
           I+GQALCT AAV+GGKSLASQISEKIVALSGG+LFIVFGIQSFLSPV+S
Sbjct: 181 ILGQALCTAAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127069|ref|XP_002329381.1| predicted membrane protein [Populus trichocarpa] gi|222870431|gb|EEF07562.1| predicted membrane protein [Populus trichocarpa]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/228 (86%), Positives = 206/228 (90%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           M+SV QGFTKSLAMTV+SEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSA VGW
Sbjct: 1   MTSVAQGFTKSLAMTVVSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAAVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT+LFFGFGLWSLWD F+D GEAEE  EVE KLDAD+KAN G  K 
Sbjct: 61  AAPNLISRAWTHHITTILFFGFGLWSLWDGFNDKGEAEELAEVEAKLDADWKANTGTAKV 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
           GSK  DELKKQRR FL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVV+GG
Sbjct: 121 GSKDSDELKKQRRTFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 228
           I+GQALCTTAAVIGGKSLASQISEKI ALSGGVLFIVFGIQSFLS V+
Sbjct: 181 IVGQALCTTAAVIGGKSLASQISEKIAALSGGVLFIVFGIQSFLSTVE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725019|ref|NP_001236310.1| uncharacterized protein LOC100527455 [Glycine max] gi|255632394|gb|ACU16547.1| unknown [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/229 (82%), Positives = 205/229 (89%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           MSS+VQGF+KSLAMT+LSEIGDKTFFAAAILA+RHPRRLVLSGCL ALIVMTIL A+VGW
Sbjct: 1   MSSIVQGFSKSLAMTILSEIGDKTFFAAAILAIRHPRRLVLSGCLSALIVMTILPALVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNLISR  THHITT LF GFGLWSL DA  + G+AEE  EVE KLD D+KA+ GATK 
Sbjct: 61  AAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEQGDAEELAEVEAKLDKDWKASNGATKN 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
            +K DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 229
           I+GQALCT+AAV+GGKSLASQISEKIVALSGG+LFIVFGIQSFLSPV+S
Sbjct: 181 ILGQALCTSAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101691|ref|XP_002312384.1| predicted membrane protein [Populus trichocarpa] gi|222852204|gb|EEE89751.1| predicted membrane protein [Populus trichocarpa]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/224 (86%), Positives = 203/224 (90%)

Query: 5   VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
           ++GFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSA VGW APN
Sbjct: 1   IKGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTILSAAVGWAAPN 60

Query: 65  LISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKA 124
           LISR  THHITT+LFFGFGLWSLWD F+D GEAEE  EVE KLDAD+KAN G  K GSK 
Sbjct: 61  LISRAWTHHITTILFFGFGLWSLWDGFNDKGEAEELAEVEAKLDADWKANTGTAKAGSKD 120

Query: 125 DDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQ 184
            DE KKQRR FL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVV+GGI+GQ
Sbjct: 121 SDEFKKQRRTFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGIVGQ 180

Query: 185 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 228
           ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS V+
Sbjct: 181 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491688|gb|AFK33910.1| unknown [Lotus japonicus]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/229 (80%), Positives = 205/229 (89%)

Query: 1   MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
           M+S+VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTILSA+VGW
Sbjct: 1   MTSIVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSALVGW 60

Query: 61  VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKE 120
            APNL+SR  THHITT LF GFGLWSL +A  + G+AE+  EVE +LD ++KA  GA+K+
Sbjct: 61  AAPNLVSRTWTHHITTFLFLGFGLWSLKEAIFEQGDAEDLAEVEAELDKNWKAKNGASKD 120

Query: 121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
            +KADD+ KK  R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKADDDKKKNNRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 229
           I+ Q LCTTAAV+GGKSLASQISEK+VALSGGVLFIVFGIQSFLSPV+S
Sbjct: 181 ILAQTLCTTAAVMGGKSLASQISEKVVALSGGVLFIVFGIQSFLSPVES 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423915|ref|XP_002281939.1| PREDICTED: GDT1-like protein 4 [Vitis vinifera] gi|297737851|emb|CBI27052.3| unnamed protein product [Vitis vinifera]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/227 (85%), Positives = 204/227 (89%)

Query: 3   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
           SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCL ALIVMTI S VVGW A
Sbjct: 4   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLAALIVMTIFSVVVGWAA 63

Query: 63  PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGS 122
           PNL+SRK THHITT+LFFGFGLWSLWD F + GEAEE  EVE KL+AD+K N  + K  S
Sbjct: 64  PNLLSRKWTHHITTLLFFGFGLWSLWDGFKEDGEAEELAEVEAKLNADWKTNTSSAKGDS 123

Query: 123 KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 182
           K DDELKKQRRP L+QFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP GVVLGGII
Sbjct: 124 KDDDELKKQRRPILMQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPIGVVLGGII 183

Query: 183 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 229
           GQALCTTAAV+GGKSLASQISEK VALSGGVLFIVFGIQS LS V+S
Sbjct: 184 GQALCTTAAVLGGKSLASQISEKFVALSGGVLFIVFGIQSLLSTVES 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147867|ref|XP_003574521.1| PREDICTED: GDT1-like protein 5-like isoform 1 [Brachypodium distachyon]

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 174/223 (78%), Positives = 197/223 (88%)

Query: 3   SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
           S++ G TKSLAMTVLSE+GDKTFFAAAILAMRHPR+LVL+GCL AL VMT LSA +GWVA
Sbjct: 4   SLLGGLTKSLAMTVLSEVGDKTFFAAAILAMRHPRKLVLAGCLSALTVMTALSASLGWVA 63

Query: 63  PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGS 122
           PNLISRK THH+TT+LFF FG+WSLW+ F + GE+EE  E+E KLDADFK+N G  K  S
Sbjct: 64  PNLISRKWTHHVTTLLFFVFGIWSLWEGFKEDGESEELAEMEAKLDADFKSNKGEQKNKS 123

Query: 123 KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 182
           KA D+ KKQRRPFL+QFFSPIFLKAFSITFFGEWGDKSQ+ATIGLAADENPFGVV+GG+I
Sbjct: 124 KATDDTKKQRRPFLMQFFSPIFLKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGVI 183

Query: 183 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 225
            QALCTTAAV+GGKSLASQISEK+V LS GVLF++FGI S LS
Sbjct: 184 AQALCTTAAVMGGKSLASQISEKMVELSSGVLFLLFGILSLLS 226

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2031195	230	AT1G25520 [Arabidopsis thalian	1.0	0.995	0.773	5.7e-91
TAIR|locus:2026879	228	AT1G68650 "AT1G68650" [Arabido	0.986	0.991	0.766	1.2e-88
WB|WBGene00021847	297	Y54F10AL.1 [Caenorhabditis ele	0.978	0.754	0.429	3.6e-41
TAIR|locus:2183632	293	AT5G36290 "AT5G36290" [Arabido	0.925	0.723	0.433	4.6e-41
FB|FBgn0260659	503	CG42542 [Drosophila melanogast	0.506	0.230	0.413	2.5e-38
ZFIN|ZDB-GENE-030131-3222	305	tmem165 "transmembrane protein	0.951	0.714	0.409	5.5e-38
UNIPROTKB|F1P1B3	254	TMEM165 "Uncharacterized prote	0.943	0.850	0.407	7e-38
UNIPROTKB|B4DHW1	261	TMEM165 "cDNA FLJ60544, highly	0.960	0.842	0.397	7e-38
UNIPROTKB|Q9HC07	324	TMEM165 "Transmembrane protein	0.960	0.679	0.397	7e-38
MGI|MGI:894407	323	Tmem165 "transmembrane protein	0.943	0.668	0.400	1.5e-37

TAIR|locus:2031195 AT1G25520 [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 178/230 (77%), Positives = 199/230 (86%)

Query:     1 MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
             MSSV+QGFTKSLAMT +SEIGDKTFFAAAILAMR+PRRLVL+GCL ALIVMTILSA +GW
Sbjct:     1 MSSVLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query:    61 VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXK-KLDADFKANAGATK 119
              APNLISRK THHITT+LFFGFGLWSLWD F +GG         + +LDAD KAN  + K
Sbjct:    61 AAPNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPK 120

Query:   120 EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLG 179
             + SK +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAADENPFGVVLG
Sbjct:   121 DSSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLG 180

Query:   180 GIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 229
             G++ Q LCTTAAVIGGKSLASQISE+IVALSGG+LFI+FGIQS+L+ V++
Sbjct:   181 GVVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVEA 230

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2026879 AT1G68650 "AT1G68650" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 174/227 (76%), Positives = 191/227 (84%)

Query:     1 MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGW 60
             M S++QGFTKSLAMT LSEIGDKTFFAAAILAMR+PRRLVL+GCL ALIVMTILSA +GW
Sbjct:     1 MGSLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGW 60

Query:    61 VAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKE 120
              APNLISRK THHITT LFFGFGLWSLWD F +GG          +LD+D K     +K 
Sbjct:    61 AAPNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDLKKTNDQSKN 120

Query:   121 GSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180
              SK +DE KKQ+RPFL  FFSPIFLKAFSI FFGEWGDKSQLATIGLAADENP GVVLGG
Sbjct:   121 -SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGG 179

Query:   181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 227
             I+ Q LCTTAAV+GGKSLASQISE+IVALSGG+LFI+FGIQS L+PV
Sbjct:   180 IVAQTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPV 226

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

WB|WBGene00021847 Y54F10AL.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 100/233 (42%), Positives = 144/233 (61%)

Query:     3 SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
             S   GF  S ++ V+SE+GDKT+F A I++MRH R  V SG +GAL +MT+LSA +GW+ 
Sbjct:    64 SFYHGFLASFSVIVVSELGDKTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSACLGWIT 123

Query:    63 PNLISRKLTHHITTVLFFGFGLWSL---WDAFSDGGXXXXXXXXXKKLDADFKANAGATK 119
               +I R +T++++T LF  FGL  L   W    + G         +    + + +AG  +
Sbjct:   124 -QVIPRAVTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAQAEVAKREGELDAGKFE 182

Query:   120 --EGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVV 177
               EG        + R+ FL  F S IF++AFS+TF  EWGD+SQL TI L A EN  GV+
Sbjct:   183 MLEGGGGVASQSETRKIFL--FTSRIFIEAFSLTFVAEWGDRSQLTTIILGARENIAGVI 240

Query:   178 LGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSPVKS 229
              GGI+G ALCT  AVIGGK +A +IS + V L GGV+F++F + + F++ ++S
Sbjct:   241 GGGILGHALCTGIAVIGGKIVAQRISVRTVTLIGGVVFLLFALSALFINDIES 293

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2183632 AT5G36290 "AT5G36290" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 97/224 (43%), Positives = 136/224 (60%)

Query:     3 SVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVA 62
             SV      S +M +++EIGD+TF  AA++AMRHP+  VLSG L AL VMTILS  +G + 
Sbjct:    80 SVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGRIV 139

Query:    63 PNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGS 122
             PNLISRK T+   TVL+  FGL  L+ A+             ++++   ++  G T    
Sbjct:   140 PNLISRKHTNSAATVLYAFFGLRLLYIAWRSTDSKSNQKKEMEEVEEKLESGQGKTPF-- 197

Query:   123 KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 182
                      RR F  +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G  I
Sbjct:   198 ---------RRLFS-RFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGASI 247

Query:   183 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 226
             G  +CT+ AV+GG  LAS+IS++ VA  GG+LF+ F + S+  P
Sbjct:   248 GHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYP 291

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

FB|FBgn0260659 CG42542 [Drosophila melanogaster (taxid:7227)]

 Score = 227 (85.0 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
 Identities = 50/121 (41%), Positives = 74/121 (61%)

Query:   106 KLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATI 165
             +LD D   NA    +   A+   ++ ++     F   I  +AF++TF  EWGD+SQL TI
Sbjct:   384 RLDRD--VNAALVND---AESGRRRPQKRGATYFTMRILAQAFTMTFLAEWGDRSQLTTI 438

Query:   166 GLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 225
              LAA ++ +GV+ GGIIG  +CT  AVIGG+ +AS+IS + V + GG++FI F I +   
Sbjct:   439 ILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKISVRTVTIVGGIVFIGFAIYAVAI 498

Query:   226 P 226
             P
Sbjct:   499 P 499

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-3222 tmem165 "transmembrane protein 165" [Danio rerio (taxid:7955)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 95/232 (40%), Positives = 141/232 (60%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    74 IHAFAAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 132

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFK----ANA 115
             +I R  T++I+T LF  FG+  L +      D G           KK D + +    AN 
Sbjct:   133 IIPRIYTYYISTALFAIFGVRMLREGLRMSPDEGQEELEEVQAEIKKKDEELQRYKLANG 192

Query:   116 GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFG 175
                 E   A + L +++ P L+   SPIF++A ++TF  EWGD+SQLATI LAA E+PFG
Sbjct:   193 APDVEAGTAANMLPQRKWPSLI---SPIFIQALTLTFLAEWGDRSQLATIVLAAREDPFG 249

Query:   176 VVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 226
             V +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+ P
Sbjct:   250 VAVGGTLGHCLCTGLAVIGGRMVAQKISVRTVTIIGGIVFLAFAFSALFIKP 301

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P1B3 TMEM165 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 95/233 (40%), Positives = 139/233 (59%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    24 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 82

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANA---- 115
             +I R  T++++T LF  FG+  L +      D G           KK D + +       
Sbjct:    83 VIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAEIKKKDEELQRTKLLNG 142

Query:   116 -GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPF 174
              G  + GS A    KK      L F SPIF++AF++TF  EWGD+SQL TI LAA E+P+
Sbjct:   143 PGDVETGSTATIPQKKW-----LHFISPIFVQAFTLTFLAEWGDRSQLTTIVLAAREDPY 197

Query:   175 GVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 226
             GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:   198 GVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 250

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|B4DHW1 TMEM165 "cDNA FLJ60544, highly similar to Transmembrane protein TPARL" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 91/229 (39%), Positives = 139/229 (60%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    31 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 89

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATK 119
             +I R  T++++TVLF  FG+  L +      D G           KK D +F+       
Sbjct:    90 VIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNG 149

Query:   120 EGS-KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVL 178
              G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +
Sbjct:   150 PGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAV 208

Query:   179 GGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 226
             GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:   209 GGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 257

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HC07 TMEM165 "Transmembrane protein 165" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 91/229 (39%), Positives = 139/229 (60%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGY-ATT 152

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATK 119
             +I R  T++++TVLF  FG+  L +      D G           KK D +F+       
Sbjct:   153 VIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNG 212

Query:   120 EGS-KADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVL 178
              G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +
Sbjct:   213 PGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAV 271

Query:   179 GGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 226
             GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:   272 GGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

MGI|MGI:894407 Tmem165 "transmembrane protein 165" [Mus musculus (taxid:10090)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 93/232 (40%), Positives = 138/232 (59%)

Query:     5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
             +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+ A  
Sbjct:    94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGY-ATT 152

Query:    65 LISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKA----NA 115
             +I R  T++++T LF  FG+  L +      D G           KK D +F+     N 
Sbjct:   153 VIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNG 212

Query:   116 GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFG 175
                + G+      KK      L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+G
Sbjct:   213 PDVETGTSTAIPQKKW-----LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYG 267

Query:   176 VVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 226
             V +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:   268 VAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX28	GDT15_ARATH	No assigned EC number	0.7816	0.9956	1.0	no	no
Q9C6M1	GDT14_ARATH	No assigned EC number	0.7956	1.0	0.9956	yes	no
B9G125	GDT15_ORYSJ	No assigned EC number	0.7488	0.9737	0.9612	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00101216 hypothetical protein (228 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	1e-43
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	3e-19
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	5e-18
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	2e-06

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score =  144 bits (366), Expect = 1e-43
 Identities = 66/221 (29%), Positives = 100/221 (45%), Gaps = 39/221 (17%)

Query: 5   VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPN 64
           ++    SL M  L+EIGDKT   A +LAMR+ R  V +G   AL  M  L+ +VG  A +
Sbjct: 1   LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAAS 60

Query: 65  LISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKA 124
           L+  +     + VLF  F +W L +                                 K 
Sbjct: 61  LLPERPLAWASGVLFLAFAVWMLIED--------------------------------KE 88

Query: 125 DDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIG 183
           DDE  +   P        +F+  F   F  E GDK+Q+ATI LAAD + P+ V  G  +G
Sbjct: 89  DDEEAQAASPRG------VFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLG 142

Query: 184 QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 224
             L +  AV+ GK +A ++ E+++     +LF++F +    
Sbjct: 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLW 183

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 78.3 bits (194), Expect = 3e-19
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 144 FLKAFSITFFGEWGDKSQLATIGLAA--DENPFGVVLGGIIGQALCTTAAVIGGKSLASQ 201
           FL +F + F  E GDK+QLATI LAA    +P+ V LG  +  AL T  AV+ G+ LA+ 
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 202 ISEKIVALSGGVLFIVFG 219
           +  +++    GVLF+ FG
Sbjct: 61  LPPRVLHFVAGVLFLAFG 78

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 75.2 bits (186), Expect = 5e-18
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 8  FTKSLAMTVLSEIGDKTFFAAAILAMRHPRR--LVLSGCLGALIVMTILSAVVGWVAPNL 65
          F  S  +  L+E+GDKT  A   LA R+ R    V  G   AL + T+L+ ++G     L
Sbjct: 1  FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 66 ISRKLTHHITTVLFFGFG 83
          +  ++ H +  VLF  FG
Sbjct: 61 LPPRVLHFVAGVLFLAFG 78

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 8   FTKSLAMTVLSEIGDKTFFAAAILAMRHP-RRLVLSGCLGALIVMTILSAVVGWVAPNLI 66
           F  +     L+E+GDKT  A   LA  +     V +G    +I+ ++L+ ++G +    +
Sbjct: 102 FVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKL 161

Query: 67  SRKLTHHITTVLFFGFGLWSLWDAFSDGG 95
             +L   I  +LF  F L  LW  F   G
Sbjct: 162 PERLLRFIAALLFLIFALVLLWQVFEALG 190

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG2881	294	consensus Predicted membrane protein [Function unk	100.0
COG2119	190	Predicted membrane protein [Function unknown]	100.0
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.92
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.91
COG2119	190	Predicted membrane protein [Function unknown]	99.85
KOG2881	294	consensus Predicted membrane protein [Function unk	99.73
PRK11469	188	hypothetical protein; Provisional	98.23
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	98.21
COG4280	236	Predicted membrane protein [Function unknown]	98.18
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	98.06
COG1971	190	Predicted membrane protein [Function unknown]	97.85
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	97.45
PRK10229	206	threonine efflux system; Provisional	96.82
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	96.81
PF03741	183	TerC: Integral membrane protein TerC family; Inter	96.74
COG0730	258	Predicted permeases [General function prediction o	96.5
PF01914	203	MarC: MarC family integral membrane protein; Inter	96.38
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	96.14
TIGR00145	283	FTR1 family protein. A characterized member from y	96.08
PRK10958	212	leucine export protein LeuE; Provisional	96.06
PRK09304	207	arginine exporter protein; Provisional	95.94
PRK10621	266	hypothetical protein; Provisional	95.91
COG4300	205	CadD Predicted permease, cadmium resistance protei	95.8
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	95.79
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	95.74
PF03239	306	FTR1: Iron permease FTR1 family; InterPro: IPR0049	95.72
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	95.56
PRK10995	221	inner membrane protein; Provisional	95.38
PF01925	240	TauE: Sulfite exporter TauE/SafE; InterPro: IPR002	95.24
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	94.95
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	94.11
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	93.95
PRK11111	214	hypothetical protein; Provisional	93.2
TIGR00948	177	2a75 L-lysine exporter.	93.15
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	93.05
PRK10739	197	putative antibiotic transporter; Provisional	92.87
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	92.72
COG4280	236	Predicted membrane protein [Function unknown]	92.64
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	91.11
COG0861	254	TerC Membrane protein TerC, possibly involved in t	90.81
PRK11469	188	hypothetical protein; Provisional	89.12
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	88.89
PF02659	67	DUF204: Domain of unknown function DUF; InterPro:	80.6
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	80.37

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=3.8e-61  Score=424.04  Aligned_cols=229  Identities=53%  Similarity=0.811  Sum_probs=206.3

Q ss_pred             CchhHHHHHHHHHHHHHhhcccHHHHHHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Q 027029            1 MSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFF   80 (229)
Q Consensus         1 ~~~~~~~f~~sf~~iflaElGDKTql~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl   80 (229)
                      |++++++|..||+||+++|+||||++++++|||||+|..||.|+..||.+||.|++++|+..++++|++|++++++++|+
T Consensus        62 ~~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~  141 (294)
T KOG2881|consen   62 ASSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFL  141 (294)
T ss_pred             hHHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhc--CCCChhhHHHHHHhhhhhhhhccC--cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhcc
Q 027029           81 GFGLWSLWDAFS--DGGEAEEFEEVEKKLDADFKANAG--ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEW  156 (229)
Q Consensus        81 ~fG~~~L~~~~~--~~~~~~e~~e~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~  156 (229)
                      +||+|||+|+++  +++++||.||+|+|++.++.+.+-  +...++.-+.+.+++.|+.++.+++|+|+++|.++|++||
T Consensus       142 iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~aEw  221 (294)
T KOG2881|consen  142 IFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFLAEW  221 (294)
T ss_pred             HHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHHHHh
Confidence            999999999975  556689999999999887655541  1111111112223456778888899999999999999999


Q ss_pred             CchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccccCC
Q 027029          157 GDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS  229 (229)
Q Consensus       157 GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~~~  229 (229)
                      |||||++|++||++.||++|++|+.+||.+||++||++|+++++||++|++.+++|++|+.||+..++.++++
T Consensus       222 GDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i~~~~~~  294 (294)
T KOG2881|consen  222 GDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVYIFQGFDA  294 (294)
T ss_pred             ccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998874

>COG2119 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=8.4e-52  Score=349.51  Aligned_cols=185  Identities=35%  Similarity=0.572  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 027029            5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL   84 (229)
Q Consensus         5 ~~~f~~sf~~iflaElGDKTql~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~   84 (229)
                      ++++..|.++|++||+|||||+++++||+||+|++|+.|+..|++.||.+++++|++.++.+|+++.++..+.+|++||+
T Consensus         1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav   80 (190)
T COG2119           1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAV   80 (190)
T ss_pred             ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHH
Q 027029           85 WSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLAT  164 (229)
Q Consensus        85 ~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlat  164 (229)
                      |+++|+.+++   +|.+                             .+++      +.+|.++|+++|++|||||||++|
T Consensus        81 ~~l~edk~~~---~e~~-----------------------------~~~~------~~~f~~tfi~~FlaE~GDKTQiAT  122 (190)
T COG2119          81 WMLIEDKEDD---EEAQ-----------------------------AASP------RGVFVTTFITFFLAELGDKTQIAT  122 (190)
T ss_pred             HHhccccccc---cccc-----------------------------cccc------ccHHHHHHHHHHHHHhccHHHHHH
Confidence            9999873221   1100                             0111      368999999999999999999999


Q ss_pred             HHHHcccC-CcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027029          165 IGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  227 (229)
Q Consensus       165 i~LAa~~~-~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~  227 (229)
                      ++||++++ |+.|++|+++||++|+.++|++|+++++|+|+|.++.++|++|+.||+..+|+..
T Consensus       123 IaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~  186 (190)
T COG2119         123 IALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF  186 (190)
T ss_pred             HHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999964 6999999999999999999999999999999999999999999999999888764

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.92  E-value=1.4e-25  Score=166.96  Aligned_cols=76  Identities=47%  Similarity=0.727  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHccc--CCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 027029          144 FLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  219 (229)
Q Consensus       144 f~~af~~~FlaE~GDKTQlati~LAa~~--~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg  219 (229)
                      |+++|.++|++|||||||++|+.||+||  +|++|++|+.+|++++|++++++|+++.+++|++++++++|++|++||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999999  899999999999999999999999999999999999999999999997

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.91  E-value=1e-24  Score=162.41  Aligned_cols=76  Identities=32%  Similarity=0.415  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHccC--CCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 027029            8 FTKSLAMTVLSEIGDKTFFAAAILAMRH--PRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG   83 (229)
Q Consensus         8 f~~sf~~iflaElGDKTql~~~~LA~r~--~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG   83 (229)
                      |+++|.++|++|+|||||++++.||+||  +++.|++|+.+|+.++|.++|++|+++++++|+++++++++++|++||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999999  667899999999999999999999999999999999999999999987

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.85  E-value=4.1e-21  Score=163.00  Aligned_cols=87  Identities=28%  Similarity=0.452  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHHccCCC-cEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 027029            5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFG   83 (229)
Q Consensus         5 ~~~f~~sf~~iflaElGDKTql~~~~LA~r~~~-~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG   83 (229)
                      +..|.++|.++|++|+|||||++|+.||++|+. |.|++|+.+|+++|++++|+.|+++++++|++.++.+++++|++||
T Consensus        99 ~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa  178 (190)
T COG2119          99 RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA  178 (190)
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999997 7899999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhh
Q 027029           84 LWSLWDAF   91 (229)
Q Consensus        84 ~~~L~~~~   91 (229)
                      +..+++..
T Consensus       179 l~~~~~~~  186 (190)
T COG2119         179 LVLLWQVF  186 (190)
T ss_pred             HHHHHHHH
Confidence            99999863

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.73  E-value=1.6e-18  Score=153.88  Aligned_cols=87  Identities=28%  Similarity=0.328  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHHccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 027029            5 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGL   84 (229)
Q Consensus         5 ~~~f~~sf~~iflaElGDKTql~~~~LA~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~   84 (229)
                      ...|+++|.++|++|||||+|++|+.||++.+++.|++|+.+++.+||.++|+.|++++++|+.+.+.+++|++|++||+
T Consensus       206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl  285 (294)
T KOG2881|consen  206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGL  285 (294)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhh
Q 027029           85 WSLWDAF   91 (229)
Q Consensus        85 ~~L~~~~   91 (229)
                      ..++..+
T Consensus       286 ~~i~~~~  292 (294)
T KOG2881|consen  286 VYIFQGF  292 (294)
T ss_pred             HHHhcCC
Confidence            9998763

>PRK11469 hypothetical protein; Provisional

Probab=98.23  E-value=2.2e-05  Score=67.37  Aligned_cols=138  Identities=20%  Similarity=0.302  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchH
Q 027029           48 LIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDE  127 (229)
Q Consensus        48 l~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~  127 (229)
                      ..+|+.++-..|+.+.+++|+ +-||+++.+.++.|.||++|++++++++++  +.    +                   
T Consensus        47 q~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~~~~~~~~--~~----~-------------------  100 (188)
T PRK11469         47 ETLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFRGADDEDE--EP----R-------------------  100 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccccc--cc----c-------------------
Confidence            367888888999999999777 779999999999999999999864322111  00    0                   


Q ss_pred             hhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcc-cCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHH
Q 027029          128 LKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD-ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKI  206 (229)
Q Consensus       128 ~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~-~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~  206 (229)
                       ++  .+.     +..+..+..+..     | .--+-+.++.- .+++...+-.-+-..+++..++..|+.+++++ .++
T Consensus       101 -~~--~~~-----~~~l~LaiAtSi-----D-AlavGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~  165 (188)
T PRK11469        101 -RR--HGF-----WLLVTTAIATSL-----D-AMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKK  165 (188)
T ss_pred             -cC--CCH-----HHHHHHHHHHHH-----H-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence             00  000     011111111100     0 00011122211 24444444444556677777888888777654 567


Q ss_pred             HHHHHHHHHHHHHHHHhccc
Q 027029          207 VALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       207 v~~~~g~lFl~fg~~~l~~~  226 (229)
                      ...++|++.+..|+..+++-
T Consensus       166 a~~lgG~iLI~iGi~il~~h  185 (188)
T PRK11469        166 AEILGGLVLIGIGVQILWTH  185 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998764

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=98.21  E-value=3.5e-05  Score=66.89  Aligned_cols=50  Identities=16%  Similarity=0.407  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 027029           45 LGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDG   94 (229)
Q Consensus        45 ~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~   94 (229)
                      .....+|+.++..+|+.+.+++|+++-++++++++++.|+||+++.++++
T Consensus        37 g~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~   86 (206)
T TIGR02840        37 AVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPK   86 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34455899999999999999999999999999999999999999998643

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG4280 Predicted membrane protein [Function unknown]

Probab=98.18  E-value=3.4e-05  Score=67.12  Aligned_cols=163  Identities=24%  Similarity=0.331  Sum_probs=110.5

Q ss_pred             CCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhc------CCCChhhHHHHHHhhh
Q 027029           35 HPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS------DGGEAEEFEEVEKKLD  108 (229)
Q Consensus        35 ~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~------~~~~~~e~~e~e~~~~  108 (229)
                      ++.+.-+.|+.+++++.-.++..+|+.+ +++|.+++++++|++.+.||-.-.|...+      ..++||.   .||.+.
T Consensus        31 ~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~---leE~~~  106 (236)
T COG4280          31 YKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEK---LEEGIV  106 (236)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhh---Hhhhhh
Confidence            3445689999999999999999999999 89999999999999999999999987643      1123222   223332


Q ss_pred             hhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHccc-CCcEeehHHHHHHHHH
Q 027029          109 ADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE-NPFGVVLGGIIGQALC  187 (229)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~-~~~~V~~G~~~a~~l~  187 (229)
                      .|.++.+                    +.   +-.+..+|-...+ | |=.--+..++|.+.+ .+..-..|+..|..+.
T Consensus       107 ldq~e~g--------------------~~---~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlv  161 (236)
T COG4280         107 LDQEEEG--------------------FS---KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLV  161 (236)
T ss_pred             ccccccc--------------------ch---hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHH
Confidence            2221110                    00   1123333332221 1 111223445555444 3445667888888888


Q ss_pred             HHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027029          188 TTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  227 (229)
Q Consensus       188 t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~  227 (229)
                      -.++..+-+.++ |+|+..++..+|.+...||.+-+-+++
T Consensus       162 lvl~~~lh~pla-rvpe~~lKfvag~lL~sfGtfWlgegv  200 (236)
T COG4280         162 LVLTAILHSPLA-RVPEPHLKFVAGALLFSFGTFWLGEGV  200 (236)
T ss_pred             HHHHHHhccHHh-hCCchhHHHHHHHHHHHhhHHHhcccc
Confidence            888888888884 699999999999999999998776653

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=98.06  E-value=0.00026  Score=59.25  Aligned_cols=169  Identities=17%  Similarity=0.183  Sum_probs=98.6

Q ss_pred             HHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHHHHHHHHhhhhhcCCCChhhH
Q 027029           26 FAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEF  100 (229)
Q Consensus        26 l~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~--~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~  100 (229)
                      +..+--+.+++++   .+.+|...+-.+...+++..-..+.+..|.  .++++++++.++.+|.+++++..+.++++++.
T Consensus        12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~   91 (191)
T PF01810_consen   12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSSTQSE   91 (191)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhh
Confidence            4455566677654   488899999999888888877777554443  46899999999999999999875543211111


Q ss_pred             HHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhH---HHHHHHHHHHhhccCchHHHHHHHHHcccCCcEee
Q 027029          101 EEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSP---IFLKAFSITFFGEWGDKSQLATIGLAADENPFGVV  177 (229)
Q Consensus       101 ~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~  177 (229)
                      .+     +  ++.              .+.-.+...-...||   .|..++...|+.+--+.+|...+.+.       ++
T Consensus        92 ~~-----~--~~~--------------~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  143 (191)
T PF01810_consen   92 AK-----K--QSK--------------SKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFILG-------IF  143 (191)
T ss_pred             hc-----c--ccH--------------HHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHHH-------HH
Confidence            00     0  000              000001111111222   45556565666653444444444332       23


Q ss_pred             hHHHHHHHHHHHHHHHHhHHhhhhcCH---HHHHHHHHHHHHHHHHHHhccc
Q 027029          178 LGGIIGQALCTTAAVIGGKSLASQISE---KIVALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       178 ~G~~~a~~l~t~lav~~G~~l~~~i~~---~~v~~~~g~lFl~fg~~~l~~~  226 (229)
                      .|+..-+......    ++.+.+++..   +++++++|++++.+|++.++++
T Consensus       144 ~~~~~w~~~~~~~----~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g  191 (191)
T PF01810_consen  144 LGSLLWFLLLALL----GSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG  191 (191)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3444444444443    4444444433   3889999999999999998864

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG1971 Predicted membrane protein [Function unknown]

Probab=97.85  E-value=0.00043  Score=59.70  Aligned_cols=44  Identities=25%  Similarity=0.536  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 027029           50 VMTILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAFSD   93 (229)
Q Consensus        50 l~t~lav~~G~~l~~~lp---~~~v~~~a~~lFl~fG~~~L~~~~~~   93 (229)
                      +.+.+.-++|.++.+++|   ..+-||+++++..+.|+||+++++++
T Consensus        45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~   91 (190)
T COG1971          45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN   91 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            344555556666665555   67889999999999999999999876

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=97.45  E-value=0.00084  Score=58.00  Aligned_cols=153  Identities=14%  Similarity=0.142  Sum_probs=93.5

Q ss_pred             CcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccC
Q 027029           37 RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAG  116 (229)
Q Consensus        37 ~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~  116 (229)
                      ++.|.+|=.++..+.-..|...+..+ ..+|++|+--.-|.+=+.+|++.++.+.     +||++|.+++.+        
T Consensus        25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l-~~ip~~wiLGlLGliPI~lGi~~l~~~~-----~~~e~~~~~~~~--------   90 (191)
T PF03596_consen   25 RRQIVIGQYLGFTILVLASLLGAFGL-LFIPPEWILGLLGLIPIYLGIKALFSGE-----DDDEEEAEEKLN--------   90 (191)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHcCC-----Cccccccccccc--------
Confidence            57899999999999999998888886 5999999988889999999999887541     111112221111        


Q ss_pred             cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhH
Q 027029          117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK  196 (229)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~  196 (229)
                                  +++.+        +.+ -+...+.+|-=||+==+=+=.+|+..  +.=+.-...-..++.++-+.+++
T Consensus        91 ------------~~~~~--------~~i-~~Va~iTiAnGgDNigIYiP~Fa~~s--~~~l~v~l~vF~ilv~v~c~la~  147 (191)
T PF03596_consen   91 ------------SPKSN--------SLI-LTVAAITIANGGDNIGIYIPLFASLS--LAELIVILIVFLILVGVWCFLAY  147 (191)
T ss_pred             ------------ccccc--------chh-HHhhhhhhhcCCCeEEEeehhhhcCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence                        00001        111 22222333335554222222222211  11122233445566677777888


Q ss_pred             Hhhhhc-----CHHHHHHHHHHHHHHHHHHHhccc
Q 027029          197 SLASQI-----SEKIVALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       197 ~l~~~i-----~~~~v~~~~g~lFl~fg~~~l~~~  226 (229)
                      .++++-     =+|+=+++.-++|++.|++.++++
T Consensus       148 ~l~~~p~i~~~leryg~~l~p~v~I~LGi~Il~es  182 (191)
T PF03596_consen  148 KLARIPIIAEFLERYGRWLVPIVYIGLGIYILIES  182 (191)
T ss_pred             HHhCChHHHHHHHHhcccHHHHHHHHhCceeeEeC
Confidence            876543     267778999999999999988874

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PRK10229 threonine efflux system; Provisional

Probab=96.82  E-value=0.11  Score=44.25  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=53.2

Q ss_pred             HHHhhcccHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHHHHHHHHhhh
Q 027029           15 TVLSEIGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWD   89 (229)
Q Consensus        15 iflaElGDKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~--~~v~~~a~~lFl~fG~~~L~~   89 (229)
                      +...-.|. ..+.++--+.+++++   ...+|...|..+...+++..-..+.+..|.  +.+++++++-.+.+|..++++
T Consensus        14 ~~~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~   92 (206)
T PRK10229         14 VALMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRG   92 (206)
T ss_pred             HHhcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344455 666677777777654   477888888888888877766666666663  357777777777899999886


Q ss_pred             hh
Q 027029           90 AF   91 (229)
Q Consensus        90 ~~   91 (229)
                      ..
T Consensus        93 ~~   94 (206)
T PRK10229         93 AL   94 (206)
T ss_pred             cc
Confidence            53

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=96.81  E-value=0.035  Score=46.20  Aligned_cols=63  Identities=13%  Similarity=0.025  Sum_probs=45.1

Q ss_pred             HHHHHccCCC---cEeehHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHHHHHHHHhhhh
Q 027029           28 AAILAMRHPR---RLVLSGCLGALIVMTILSAVVGWVAPNLISR--KLTHHITTVLFFGFGLWSLWDA   90 (229)
Q Consensus        28 ~~~LA~r~~~---~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~--~~v~~~a~~lFl~fG~~~L~~~   90 (229)
                      ++.-+.++++   ..+.+|..++..+...+++..-..+-+..|.  .++++++++-.+.+|..++++.
T Consensus         9 ~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~   76 (185)
T TIGR00949         9 VMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK   76 (185)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3344445543   3588899999999988888765555566664  5678888887788999988854

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=96.74  E-value=0.12  Score=44.21  Aligned_cols=163  Identities=20%  Similarity=0.215  Sum_probs=99.6

Q ss_pred             ccHHHHHHHHHHc---cCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCCh
Q 027029           21 GDKTFFAAAILAM---RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA   97 (229)
Q Consensus        21 GDKTql~~~~LA~---r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~   97 (229)
                      +|+-.+++++...   +++++..+.|...|.++=.++-.. |.++-+..  .+++++.|+..+..|..++++..+.|   
T Consensus        12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~-~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~~~~~d---   85 (183)
T PF03741_consen   12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFL-ASWLLSIF--PWILLIGGLFLLYIAIKLLHEERDED---   85 (183)
T ss_pred             hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccccc---
Confidence            5666665554433   234568999999999665555444 44443432  67888888888888888887754111   


Q ss_pred             hhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCch-----HHHHHHHHHcccC
Q 027029           98 EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-----SQLATIGLAADEN  172 (229)
Q Consensus        98 ~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDK-----TQlati~LAa~~~  172 (229)
                      +|+++.++ .+    +                ..+.+      .+.++.+..   .-|.=|=     |=+++++++  .+
T Consensus        86 ~~~~~~~~-~~----~----------------~~~~~------~~~~~~~v~---~I~~~DlvfSlDSV~a~~~it--~~  133 (183)
T PF03741_consen   86 PENAEVEE-EK----K----------------FFPVS------KSSLWLAVI---QIELADLVFSLDSVLAAVGIT--DD  133 (183)
T ss_pred             cchhhhhh-hh----c----------------cccch------hHHHHHHHH---HHHHHHHHHHHhHHHHHHHHh--hh
Confidence            11111110 00    0                00000      011233322   2233343     345566665  67


Q ss_pred             CcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027029          173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL  224 (229)
Q Consensus       173 ~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~  224 (229)
                      ++.++.|...+....-..+-.+.+++.++   .++++.++.+-...|+.++.
T Consensus       134 ~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~  182 (183)
T PF03741_consen  134 FFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLIL  182 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999998764   67788888877777877654

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>COG0730 Predicted permeases [General function prediction only]

Probab=96.50  E-value=0.097  Score=46.01  Aligned_cols=174  Identities=17%  Similarity=0.043  Sum_probs=101.1

Q ss_pred             CcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccC
Q 027029           37 RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAG  116 (229)
Q Consensus        37 ~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~  116 (229)
                      +..+-.-...-+...+.+++.+|.++...+|.++.+..-+.+.+..++++++...+..+ +++.++.   ..... .-  
T Consensus        68 ~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~---~~~~~-~~--  140 (258)
T COG0730          68 RGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKA-EDRAARL---RPLLF-AL--  140 (258)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccc---Ccchh-HH--
Confidence            34577788888888889999999999999999999999999999999999987532100 0100000   00000 00  


Q ss_pred             cccCCCCCchHhhhhccchhhhhhh--HHHHHHHHHHHhhccCchHHHHHHHHHc---------ccC--CcEeehHHHHH
Q 027029          117 ATKEGSKADDELKKQRRPFLLQFFS--PIFLKAFSITFFGEWGDKSQLATIGLAA---------DEN--PFGVVLGGIIG  183 (229)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~~af~~~FlaE~GDKTQlati~LAa---------~~~--~~~V~~G~~~a  183 (229)
                               ...-.-.-...+..+.  ..+...-.+..+....+|--.+|-....         .|.  .-.+-......
T Consensus       141 ---------~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  211 (258)
T COG0730         141 ---------ALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALL  211 (258)
T ss_pred             ---------HHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence                     0000000000000000  0122222333444444443322221110         011  11111222227


Q ss_pred             HHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027029          184 QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       184 ~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~  226 (229)
                      +.+.+.++...|..+.+++|++.++++-+.+.+..++.++++.
T Consensus       212 l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~  254 (258)
T COG0730         212 LAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRG  254 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999999887654

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=96.38  E-value=0.1  Score=45.16  Aligned_cols=151  Identities=19%  Similarity=0.196  Sum_probs=92.7

Q ss_pred             eehHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHHHHHHhhhhhcCCC-ChhhHHHHHHhhhhhhhhccC
Q 027029           40 VLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGG-EAEEFEEVEKKLDADFKANAG  116 (229)
Q Consensus        40 V~~G~~~Al~l~t~lav~~G~~l~~~--lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~-~~~e~~e~e~~~~~~~~~~~~  116 (229)
                      ..-.+..+++ .-.+..++|+++-++  ++..-.++.+|++.+..|+.|+....+.++ .++|.+|.+      +.   .
T Consensus        40 a~~a~~~a~~-ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~~------~~---~  109 (203)
T PF01914_consen   40 ARRASIIAFI-ILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSPSSEKSSPDEKEEAK------DA---E  109 (203)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhhhhc------cc---c
Confidence            3334444444 445566778877664  578889999999999999999986643311 111111000      00   0


Q ss_pred             cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCC---cEeehHHHHHHHHHHHHHHH
Q 027029          117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVI  193 (229)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~---~~V~~G~~~a~~l~t~lav~  193 (229)
                      +.            .        +.|       +.+--=-|.-|=-+++.++++++.   ..+..++.....+.+.+.-.
T Consensus       110 ~~------------a--------i~P-------La~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~  162 (203)
T PF01914_consen  110 DI------------A--------IVP-------LAIPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILR  162 (203)
T ss_pred             cc------------e--------ecc-------cchhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00            0        011       011111244455555666666543   34556677777777888888


Q ss_pred             HhHHhhhhcCH---HHHHHHHHHHHHHHHHHHhcccc
Q 027029          194 GGKSLASQISE---KIVALSGGVLFIVFGIQSFLSPV  227 (229)
Q Consensus       194 ~G~~l~~~i~~---~~v~~~~g~lFl~fg~~~l~~~~  227 (229)
                      .++++.+++.+   +.+.++.|++-...|+-+..++.
T Consensus       163 ~a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~Gl  199 (203)
T PF01914_consen  163 FADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSGL  199 (203)
T ss_pred             HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888865   46788999999999998887764

These proteins may be transporters. ; GO: 0016021 integral to membrane

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=96.14  E-value=0.19  Score=46.43  Aligned_cols=196  Identities=16%  Similarity=0.164  Sum_probs=104.6

Q ss_pred             HHHHHHHHhhc---ccHHHHHHHHHHcc-----CCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Q 027029           10 KSLAMTVLSEI---GDKTFFAAAILAMR-----HPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFG   81 (229)
Q Consensus        10 ~sf~~iflaEl---GDKTql~~~~LA~r-----~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~   81 (229)
                      ..|....+-|.   +|+-+..+++++.+     ++++..+.|...|+++=.++ +.+|.++-+..  .++.++.|+..+.
T Consensus        63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~-i~~g~~Li~~f--~wi~~ifG~fLi~  139 (302)
T TIGR03718        63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIF-IALGAALIEQF--HWVLYIFGAFLLY  139 (302)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh--HHHHHHHHHHHHH
Confidence            34555555564   89999999988763     33467999999998765554 44555554332  4577777777767


Q ss_pred             HHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHh-hhhccchhhhhhhHHHHHHHHHHHhhccCchH
Q 027029           82 FGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDEL-KKQRRPFLLQFFSPIFLKAFSITFFGEWGDKS  160 (229)
Q Consensus        82 fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKT  160 (229)
                      -|.+++++..+  ++|.|++..-+-+.    +--  |.++....+.- .+..++.   ...| +..+   +..-|.=|=.
T Consensus       140 ~a~k~~~~~~~--~~~~~~~~~~~~~~----~~~--~v~~~~~g~~f~~~~~g~~---~~tp-l~~v---li~Ie~~Dlv  204 (302)
T TIGR03718       140 TGIKMLFEGDE--EDDPENNPLVRLLR----RVL--PVTDKYHGDRFFVRENGKR---YATP-LFLV---LVLVETTDLI  204 (302)
T ss_pred             HHHHHHhhccc--ccCccccHHHHHHH----hhc--CCCccccCCceeeeecCce---ecCc-HHHH---HHHHHHHHHH
Confidence            77776664311  00011000000000    000  00000000000 0000000   0112 2233   3334555543


Q ss_pred             HH---HHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027029          161 QL---ATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       161 Ql---ati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~  226 (229)
                      .=   .....|..++|+.|+.+...|....-.+--++.+++.+.   .++++.++++-...|+.++.+.
T Consensus       205 FslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf---~~L~~~~a~iL~fIGvkmll~~  270 (302)
T TIGR03718       205 FAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERF---HYLKYGLAVILVFIGVKMLLHA  270 (302)
T ss_pred             HhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhh
Confidence            31   122333446799999999988877666666677777553   5788888888888888887763

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>TIGR00145 FTR1 family protein

Probab=96.08  E-value=0.34  Score=44.23  Aligned_cols=156  Identities=20%  Similarity=0.204  Sum_probs=87.0

Q ss_pred             CcEeehHHHHHHHHHHHHHHHHHhhhhcccc---HH----HHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhh
Q 027029           37 RRLVLSGCLGALIVMTILSAVVGWVAPNLIS---RK----LTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDA  109 (229)
Q Consensus        37 ~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp---~~----~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~  109 (229)
                      +++|+.|+..|++++-++++++-......-.   ++    .+.+++.++...+++||.+.+.      +=.++.|++.++
T Consensus        38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~~~~~------~~~~~i~~~~~~  111 (283)
T TIGR00145        38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRMQR------KWRVKIERQLVQ  111 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            3589999999999998888877665443322   33    3678888888999999996441      112233333321


Q ss_pred             hhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHH
Q 027029          110 DFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTT  189 (229)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~  189 (229)
                      .-                  ++.++.     +..+..+|..++ =| |=-|=+--.+.+...+...+..|..+|.++...
T Consensus       112 al------------------~~~~~~-----~al~~l~flaV~-RE-G~EtVlF~~g~~~~~~~~~~~gg~~~Gl~~~~~  166 (283)
T TIGR00145       112 AL------------------KRKRSG-----WAIALIAFIAVV-RE-GLETVLFLAGFQQGSHATAYIGPAVAGLIVAVV  166 (283)
T ss_pred             HH------------------hcCcch-----hHHHHHHHHHHH-Hh-hhHHHHhHHHHhcCCCchhHHHHHHHHHHHHHH
Confidence            11                  000011     244555555332 00 111111111111112222223357777777766


Q ss_pred             HHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027029          190 AAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL  224 (229)
Q Consensus       190 lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~  224 (229)
                      ++.+.=+. ..|+|.|..-.+.+++-++++.-++-
T Consensus       167 ~g~li~~~-~~~i~l~~FF~~t~~lL~llAagl~~  200 (283)
T TIGR00145       167 VGVLLYRG-GSRLSLKIFFILSSSLLLFIAAGLLG  200 (283)
T ss_pred             HHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            66665444 47899999988888877777665554

A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.

>PRK10958 leucine export protein LeuE; Provisional

Probab=96.06  E-value=0.82  Score=39.38  Aligned_cols=74  Identities=14%  Similarity=0.047  Sum_probs=46.6

Q ss_pred             HhhcccHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhhhh
Q 027029           17 LSEIGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDAF   91 (229)
Q Consensus        17 laElGDKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~~~~   91 (229)
                      ..--|...- ..+.-+.+++++   ...+|..++..+...+++..-..+.+..|.-  .+++++++-.+.+|.+.+++..
T Consensus        21 ~~sPGP~~~-~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~~~   99 (212)
T PRK10958         21 VLLPGPNSL-YVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRAAL   99 (212)
T ss_pred             hcCCchHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334454443 334445555543   4777888888888777775444444444432  4677777777889999998763

>PRK09304 arginine exporter protein; Provisional

Probab=95.94  E-value=0.53  Score=40.33  Aligned_cols=75  Identities=11%  Similarity=0.046  Sum_probs=45.8

Q ss_pred             HHHhhcccHHHHHHHHHHccCCC-cEeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhhh
Q 027029           15 TVLSEIGDKTFFAAAILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDA   90 (229)
Q Consensus        15 iflaElGDKTql~~~~LA~r~~~-~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~~~   90 (229)
                      .+.+-.|.- .+..+.-+.++++ .....|...+..+...+++..-..+-...|.-  .+++++++-.+.+|..++++.
T Consensus        14 ~~~~tPGP~-~~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~rs~   91 (207)
T PRK09304         14 AMILPLGPQ-NAFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTA   91 (207)
T ss_pred             HHHhccChH-HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444543 3333444555543 24777888888887777666555554444443  467777777777999999875

>PRK10621 hypothetical protein; Provisional

Probab=95.91  E-value=0.5  Score=42.00  Aligned_cols=166  Identities=15%  Similarity=0.090  Sum_probs=93.1

Q ss_pred             cEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhh-ccC
Q 027029           38 RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKA-NAG  116 (229)
Q Consensus        38 ~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~-~~~  116 (229)
                      ..+=.-...-+.+.+.+.+..|.++.+.+|+++.+++.+++.+..++++++...++++  ++.++    ....... ..+
T Consensus        73 ~~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~~~~~~~--~~~~~----~~~~~~~~~~G  146 (266)
T PRK10621         73 KVVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLMPKLGEE--DRQRR----LYGLPFALIAG  146 (266)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCccccc--ccccc----ccchHHHHHHH
Confidence            4566777777888899999999999999999999999999888899988764321110  00000    0000000 000


Q ss_pred             cccCCCCCchHhhhhccchhhhhhh--HHHHHHHHHHHhhccCchHHHHHH-------------HHHcccCCcEeehHHH
Q 027029          117 ATKEGSKADDELKKQRRPFLLQFFS--PIFLKAFSITFFGEWGDKSQLATI-------------GLAADENPFGVVLGGI  181 (229)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~~af~~~FlaE~GDKTQlati-------------~LAa~~~~~~V~~G~~  181 (229)
                                    -.....+.++.  ..+.....+..+..+.-|...+|.             .......   +-.-..
T Consensus       147 --------------~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~---v~~~~~  209 (266)
T PRK10621        147 --------------GCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGK---VIWATG  209 (266)
T ss_pred             --------------HHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe---ehHHHH
Confidence                          00000000000  001111111122222222211111             1111111   111223


Q ss_pred             HHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027029          182 IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       182 ~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~  226 (229)
                      +.+...+.++...|..+.+++|++.++++...+-+..|+.+++..
T Consensus       210 l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~  254 (266)
T PRK10621        210 FVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDS  254 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHH
Confidence            446677889999999999999999999999999999998887654

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=95.80  E-value=0.022  Score=49.10  Aligned_cols=75  Identities=11%  Similarity=0.065  Sum_probs=54.7

Q ss_pred             HHHhhcccHHHHHHHHHHccC---CCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027029           15 TVLSEIGDKTFFAAAILAMRH---PRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA   90 (229)
Q Consensus        15 iflaElGDKTql~~~~LA~r~---~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~   90 (229)
                      ++.|-==|--=+..+.+|.+.   +++.+.+|=.++....-+.|..+ .+..+++|++|+--.-|..=++.|+|.++.+
T Consensus        11 ly~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~-a~v~~fvp~e~I~glLGLIPi~LGik~l~~~   88 (205)
T COG4300          11 LYIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLF-AFVLNFVPEEWILGLLGLIPIYLGIKVLILG   88 (205)
T ss_pred             HHHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHH-HHHHhhCcHHHHHHHHhHHHHHHhhHHhhcc
Confidence            344444455556666666654   23569999999887776655544 4466899999999899999999999999865

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=95.79  E-value=0.12  Score=45.46  Aligned_cols=158  Identities=22%  Similarity=0.248  Sum_probs=94.7

Q ss_pred             ccHHHHHHHHHH---ccCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCCh
Q 027029           21 GDKTFFAAAILA---MRHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA   97 (229)
Q Consensus        21 GDKTql~~~~LA---~r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~   97 (229)
                      +|+-.+++++..   .+++++..+.|...|.++=-++-......+ +   ..+++++.|+..+.-|..++++..+    +
T Consensus         9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~---~~~l~~iGG~~Ll~~~~k~l~~~~~----~   80 (215)
T TIGR03716         9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-K---FWWIKAIGALYLLYLAIKHFRKKKK----G   80 (215)
T ss_pred             hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHhccc----c
Confidence            466665555433   223346799999999887766655544444 3   2377777777777777777765311    1


Q ss_pred             hhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCch-----HHHHHHHHHcccC
Q 027029           98 EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK-----SQLATIGLAADEN  172 (229)
Q Consensus        98 ~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDK-----TQlati~LAa~~~  172 (229)
                      +|.+|.+        .               ++. .        +.|+.+.   ..-|.=|=     +=++.++++  .+
T Consensus        81 ~~~~~~~--------~---------------~~~-~--------~~f~~av---~~I~~~DlvFSlDSV~A~~git--~~  123 (215)
T TIGR03716        81 KEDEEAE--------K---------------KKA-H--------SGFWRTV---LKVELMDIAFSVDSILAAVALS--GQ  123 (215)
T ss_pred             ccccccc--------c---------------ccc-c--------chHHHHH---HHHHHHHHHHHhhhHHHHHHhc--cC
Confidence            1100000        0               000 0        1122222   22233343     234444443  67


Q ss_pred             CcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027029          173 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       173 ~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~  226 (229)
                      |+.++.|...+....-..+-.+.+++.++   .++++.+...-...|+.++.++
T Consensus       124 ~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~  174 (215)
T TIGR03716       124 FWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLET  174 (215)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999988888888888664   5778888888888888887753

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=95.74  E-value=0.67  Score=39.38  Aligned_cols=76  Identities=12%  Similarity=0.051  Sum_probs=50.4

Q ss_pred             HHHHhhcccHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhh
Q 027029           14 MTVLSEIGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLW   88 (229)
Q Consensus        14 ~iflaElGDKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~   88 (229)
                      ++...--|. ..+..+.-+.+++++   ...+|...+..+...+++..-..+.+..|.-  .+++++++-.+.+|.++++
T Consensus        14 ~~~~~sPGP-~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~   92 (205)
T PRK10520         14 IILSLSPGS-GAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWR   92 (205)
T ss_pred             HHHhcCCch-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444 344555556666543   4778999999998888776665554544543  4677777777889999998


Q ss_pred             hh
Q 027029           89 DA   90 (229)
Q Consensus        89 ~~   90 (229)
                      ..
T Consensus        93 s~   94 (205)
T PRK10520         93 AA   94 (205)
T ss_pred             CC
Confidence            64

>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake

Probab=95.72  E-value=0.69  Score=42.35  Aligned_cols=168  Identities=22%  Similarity=0.253  Sum_probs=97.2

Q ss_pred             CcEeehHHHHHHHHHHHHHHHHHhhhhccccH-----------HHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 027029           37 RRLVLSGCLGALIVMTILSAVVGWVAPNLISR-----------KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEK  105 (229)
Q Consensus        37 ~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~-----------~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~  105 (229)
                      +++|+.|+..+++.+-.+++.+-..... ++.           ..+..++.++-....+||.+...+.+      +|.|+
T Consensus        35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~-~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~~~------~~~~~  107 (306)
T PF03239_consen   35 RRWVWLGVAAGLVASLVIGAVFAVIFYT-LSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRKMK------GEWED  107 (306)
T ss_pred             hheeeecHhHHHHHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------hhHHH
Confidence            4789999999999999988887766543 332           23567777777788889887532211      12222


Q ss_pred             hhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHccc--CCcEeehHHHHH
Q 027029          106 KLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIG  183 (229)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~--~~~~V~~G~~~a  183 (229)
                      ++++.-+...++.+..    + .....++     .+..|..+|.. .+=| |=-|=+--.++.+..  +...+..|...|
T Consensus       108 ~~~~~~~~~~~~~~~~----~-~~~~~~~-----~~~l~~~afl~-vlRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G  175 (306)
T PF03239_consen  108 KLAKALSSGSEDARAS----Q-KDEGGGS-----KWALFLLAFLI-VLRE-GLEAVLFLAALAASLRKDAASILLGAILG  175 (306)
T ss_pred             HHHHHHhhccchhhhh----h-hccccch-----hhHHHHHHHHH-HHHh-hHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            2222111110000000    0 0000011     13566667653 2323 444444455555443  357788899999


Q ss_pred             HHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027029          184 QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL  224 (229)
Q Consensus       184 ~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~  224 (229)
                      .++...++.++-+.. .++|.+..-.+.+++-++.+..++.
T Consensus       176 ~~~a~~~~~~~~~~~-~~i~~~~~f~~~~~~ll~~aa~L~~  215 (306)
T PF03239_consen  176 IAAAVVLGWLLYRGL-IRISLRSFFIITGVLLLLIAAGLLG  215 (306)
T ss_pred             HHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence            999888888886654 5689888877777755555544443

Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=95.56  E-value=1.4  Score=38.04  Aligned_cols=69  Identities=13%  Similarity=0.060  Sum_probs=45.3

Q ss_pred             cccHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHH-Hhhhhcccc--HHHHHHHHHHHHHHHHHHHhhhh
Q 027029           20 IGDKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVV-GWVAPNLIS--RKLTHHITTVLFFGFGLWSLWDA   90 (229)
Q Consensus        20 lGDKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~-G~~l~~~lp--~~~v~~~a~~lFl~fG~~~L~~~   90 (229)
                      -|.- .+..+.-+++++++   .+-+|..++..+...+++.. +..+ ..-|  ...++++++.-.+.+|..+++..
T Consensus        20 PGP~-~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all-~~~~~~f~~lk~~GaaYL~ylg~~~~ra~   94 (208)
T COG1280          20 PGPD-NLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALL-ATSPALFTVLKLAGAAYLLYLGWKALRAG   94 (208)
T ss_pred             CCcc-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4443 34445556666553   58888888888777776653 2333 2222  23578888888889999999876

>PRK10995 inner membrane protein; Provisional

Probab=95.38  E-value=0.16  Score=44.39  Aligned_cols=52  Identities=12%  Similarity=0.084  Sum_probs=37.0

Q ss_pred             eehHHHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHHHHHHHhhhhhc
Q 027029           40 VLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAFS   92 (229)
Q Consensus        40 V~~G~~~Al~l~t~lav~~G~~l~~~l--p~~~v~~~a~~lFl~fG~~~L~~~~~   92 (229)
                      ..-.+..+.+++ .+..+.|..+-+++  +....++.+|++.+.+|+.|+++..+
T Consensus        44 a~~~~~~a~~il-l~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~~~   97 (221)
T PRK10995         44 ALMASVYVFAIM-MVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQQK   97 (221)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            334444444444 46677777776654  66789999999999999999986543

>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised

Probab=95.24  E-value=0.6  Score=39.97  Aligned_cols=50  Identities=14%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             ehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhh
Q 027029           41 LSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA   90 (229)
Q Consensus        41 ~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~   90 (229)
                      -.=...-+.+...+.+.+|.++...+|+++++...++.-+.++.++++..
T Consensus        62 ~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~  111 (240)
T PF01925_consen   62 DWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK  111 (240)
T ss_pred             chhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33455566778888999999999999999999999999999999998854

; GO: 0016021 integral to membrane

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=94.95  E-value=2  Score=36.43  Aligned_cols=69  Identities=14%  Similarity=0.070  Sum_probs=45.4

Q ss_pred             cHHHHHHHHHHccCCCc---EeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhhh
Q 027029           22 DKTFFAAAILAMRHPRR---LVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDA   90 (229)
Q Consensus        22 DKTql~~~~LA~r~~~~---~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~~~   90 (229)
                      .=+.+..+.-+.+++++   ....|...+..+...+++.....+.+..|.-  .+++++++-.+..|.++++..
T Consensus        21 GP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~   94 (195)
T PRK10323         21 GPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP   94 (195)
T ss_pred             ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34455555666666643   5889999999998777765444554444433  456666666677999998763

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=94.11  E-value=0.07  Score=46.34  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=45.6

Q ss_pred             cEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027029          174 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  227 (229)
Q Consensus       174 ~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~  227 (229)
                      +...+-...-+.+++.++..+|+.+.+.+|+++-+++++++++..|++++++++
T Consensus        30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~   83 (206)
T TIGR02840        30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF   83 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445566899999999999999999999999999999999999998874

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=93.95  E-value=2.6  Score=35.83  Aligned_cols=152  Identities=17%  Similarity=0.167  Sum_probs=94.6

Q ss_pred             ccHHHHHHHHHHccCCC----cEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 027029           21 GDKTFFAAAILAMRHPR----RLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGE   96 (229)
Q Consensus        21 GDKTql~~~~LA~r~~~----~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~   96 (229)
                      +|+-.++++ .+.+.++    +....|...|+++..+........+ +   ..+.++.+|+..+..|..++++..+    
T Consensus        14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll-~---~~~~~iaGGllLl~ia~~ml~~~~~----   84 (176)
T TIGR03717        14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLL-A---IPFLKLIGGLLLLWIGWKLLLEEEE----   84 (176)
T ss_pred             HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hHHHHHHHHHHHHHHHHHHHhcccc----
Confidence            788887777 3444433    5689999999988877766655444 4   3788999999999999999875311    


Q ss_pred             hhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchH-----HHHHHHHHccc
Q 027029           97 AEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKS-----QLATIGLAADE  171 (229)
Q Consensus        97 ~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKT-----Qlati~LAa~~  171 (229)
                      +++.   +                        .+..++         |+.+...   -|.=|=.     =++.++.+ +.
T Consensus        85 ~~~~---~------------------------~~~~~~---------~~~~v~~---I~~~D~~fS~DsV~a~~~~~-~~  124 (176)
T TIGR03717        85 EQGG---D------------------------VKGSTT---------LWAAIKT---IVIADAVMSLDNVLAVAGAA-HG  124 (176)
T ss_pred             cccc---c------------------------ccccCc---------HHHHHHH---HHHHHHHHHHHHHHHHHHHh-cC
Confidence            0000   0                        000011         2222221   2222322     22333333 34


Q ss_pred             CCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhc
Q 027029          172 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL  224 (229)
Q Consensus       172 ~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~  224 (229)
                      +.+.++.|..++..+.-..+-++.+++.++   .++++.+...-...|+.+++
T Consensus       125 ~~~li~~g~~i~i~~m~~~s~~~~~~~~~~---p~l~~~~~~~L~~ig~kl~~  174 (176)
T TIGR03717       125 HLGLLIFGLLLSIPIIVWGSTLILKLMDRF---PWIIYIGAALLGYVAGEMIV  174 (176)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence            667788898888888888787777777653   57777777777777877765

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK11111 hypothetical protein; Provisional

Probab=93.20  E-value=0.26  Score=43.19  Aligned_cols=152  Identities=16%  Similarity=0.150  Sum_probs=81.9

Q ss_pred             EeehHHHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHHHHHHHhhhhhcCC-CChhhHHHHHHhhhhhhhhcc
Q 027029           39 LVLSGCLGALIVMTILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAFSDG-GEAEEFEEVEKKLDADFKANA  115 (229)
Q Consensus        39 ~V~~G~~~Al~l~t~lav~~G~~l~~~l--p~~~v~~~a~~lFl~fG~~~L~~~~~~~-~~~~e~~e~e~~~~~~~~~~~  115 (229)
                      ..+-.+..+.+++- +..++|+++-++.  +..-.++.+|++.+.+|+.|++...++. ++++|.+|.+      ++++ 
T Consensus        45 ia~~a~l~a~~ill-~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~~~~~~~~~~~~~~~~------~~~~-  116 (214)
T PRK11111         45 TNLTANLSVAIILL-ISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETA------VRES-  116 (214)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccccc------cccc-
Confidence            45555555555554 6688899887754  7778999999999999999997542211 1111110000      0000 


Q ss_pred             CcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcE---eehHHHHHHHHHHHHHH
Q 027029          116 GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFG---VVLGGIIGQALCTTAAV  192 (229)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~---V~~G~~~a~~l~t~lav  192 (229)
                         .           .        +.| .      .+--=-|.-|--+++.++++++.+.   ....+.+...+.+.+.-
T Consensus       117 ---i-----------a--------ivP-L------a~PllaGPGaIttvI~l~~~~~~~~~~~~~~~ai~~~~~~~~l~l  167 (214)
T PRK11111        117 ---I-----------G--------VVP-L------ALPLMAGPGAISSTIVWGTRYHSWSNLLGFSVAIALFALCCWLLF  167 (214)
T ss_pred             ---e-----------e--------eec-c------ccccccCcHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence               0           0        000 0      0000012222233334444332111   12233444444555555


Q ss_pred             HHhHHhhhhcC---HHHHHHHHHHHHHHHHHHHhcccc
Q 027029          193 IGGKSLASQIS---EKIVALSGGVLFIVFGIQSFLSPV  227 (229)
Q Consensus       193 ~~G~~l~~~i~---~~~v~~~~g~lFl~fg~~~l~~~~  227 (229)
                      ..+.++.+++.   .+.+.++.|++-..+|+-+..+++
T Consensus       168 ~~s~~i~r~LG~~G~~vi~RimGliL~aiaVq~i~~Gi  205 (214)
T PRK11111        168 RMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGI  205 (214)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777665   457789999999999998877664

>TIGR00948 2a75 L-lysine exporter

Probab=93.15  E-value=2.9  Score=34.64  Aligned_cols=63  Identities=10%  Similarity=0.046  Sum_probs=44.3

Q ss_pred             HHHHccCCC-cEeehHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHhhhhh
Q 027029           29 AILAMRHPR-RLVLSGCLGALIVMTILSAVVGWVAPNLISRK--LTHHITTVLFFGFGLWSLWDAF   91 (229)
Q Consensus        29 ~~LA~r~~~-~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~--~v~~~a~~lFl~fG~~~L~~~~   91 (229)
                      +.-+.|+++ ....+|...+..+...++++.-..+.+..|.-  .+++++++-.+.+|..++++..
T Consensus        13 i~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~   78 (177)
T TIGR00948        13 LRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW   78 (177)
T ss_pred             HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444 35888999999888887777666665555543  4677777777889999998764

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=93.05  E-value=4.1  Score=37.26  Aligned_cols=70  Identities=13%  Similarity=0.047  Sum_probs=48.0

Q ss_pred             HHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhc--CHHHHH---HHHHHHHHHHHHHHhc
Q 027029          150 ITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQI--SEKIVA---LSGGVLFIVFGIQSFL  224 (229)
Q Consensus       150 ~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i--~~~~v~---~~~g~lFl~fg~~~l~  224 (229)
                      +.|..-+|+=+.=....++.       -+|..+.+.....+++...+...++.  ..++++   ++++++=+++|+++.|
T Consensus       199 LL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~  271 (279)
T PRK10019        199 LLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGV  271 (279)
T ss_pred             HHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555544444444332       26888888888888766677666666  456666   9999999999999887


Q ss_pred             cc
Q 027029          225 SP  226 (229)
Q Consensus       225 ~~  226 (229)
                      ..
T Consensus       272 ~~  273 (279)
T PRK10019        272 HG  273 (279)
T ss_pred             HH
Confidence            64

>PRK10739 putative antibiotic transporter; Provisional

Probab=92.87  E-value=2.4  Score=36.71  Aligned_cols=148  Identities=11%  Similarity=0.166  Sum_probs=80.0

Q ss_pred             EeehHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccC
Q 027029           39 LVLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAG  116 (229)
Q Consensus        39 ~V~~G~~~Al~l~t~lav~~G~~l~~~--lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~  116 (229)
                      ...-.+..+..++ .+..++|+.+-++  ++..-.++.+|++.+.+|+.|+++..++++  +|   .+   ++ + +..=
T Consensus        39 ia~~a~~~a~~il-l~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~~~~~~--~~---~~---~~-~-~~av  107 (197)
T PRK10739         39 IMIRELLIALLVM-LVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPSAEGNS--SG---LP---AG-E-EPFL  107 (197)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcccc--cc---cc---cc-c-Ccee
Confidence            3444455555444 4677788877775  477889999999999999999965421110  00   00   00 0 0000


Q ss_pred             cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhH
Q 027029          117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK  196 (229)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~  196 (229)
                      -|.            .-|.   ...|.-.++ ++..-.|.+++              ......+.+...+.+.+.-..++
T Consensus       108 vPL------------a~Pl---laGPGaItt-vi~l~~~~~~~--------------~~~~~~ai~~~~~~~~l~l~~s~  157 (197)
T PRK10739        108 VPL------------AIPL---VAGPSILAT-LMLLSHQYPNQ--------------MGHLVIALLIAWGGTFVILLQSS  157 (197)
T ss_pred             eec------------cccc---ccCcHHHHH-HHHHHhhccch--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            000            0000   011222222 22333332211              11122334444455666666677


Q ss_pred             HhhhhcCH---HHHHHHHHHHHHHHHHHHhcccc
Q 027029          197 SLASQISE---KIVALSGGVLFIVFGIQSFLSPV  227 (229)
Q Consensus       197 ~l~~~i~~---~~v~~~~g~lFl~fg~~~l~~~~  227 (229)
                      .+.+++.+   +.+.++.|++-...|+-+..++.
T Consensus       158 ~i~~~LG~~g~~vi~RimGllLaaiavq~i~~Gi  191 (197)
T PRK10739        158 LFLRLLGEKGVNALERLMGLILVMLSTQMFLDGI  191 (197)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777754   57788999999999998887764

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=92.72  E-value=0.43  Score=41.44  Aligned_cols=55  Identities=16%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             cCCCcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhhh
Q 027029           34 RHPRRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWD   89 (229)
Q Consensus        34 r~~~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L~~   89 (229)
                      |++++.|.+|-.++....-..|+..+..+ ..+|++|+--.-|.+=+++|+|-+++
T Consensus        21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~~   75 (193)
T TIGR00779        21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAIK   75 (193)
T ss_pred             CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHhc
Confidence            56778999999999988888888765554 69999999778888889999998876

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

>COG4280 Predicted membrane protein [Function unknown]

Probab=92.64  E-value=0.22  Score=43.75  Aligned_cols=81  Identities=26%  Similarity=0.377  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHcc--cCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 027029          142 PIFLKAFSITFFGEWGDKSQLATIGLAAD--ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  219 (229)
Q Consensus       142 ~~f~~af~~~FlaE~GDKTQlati~LAa~--~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg  219 (229)
                      .+|+.+|...++ |   -+-.-+++.+-.  +++..-+.|+.+|+++.-.++..+|+.+ ..+|..++++++|++.+.||
T Consensus         4 si~lAAl~sSlv-E---lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG   78 (236)
T COG4280           4 SIFLAALGSSLV-E---LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFG   78 (236)
T ss_pred             HHHHHHHHHHHH-H---HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHH
Confidence            445555543222 2   245567777743  5667789999999999999999999999 57999999999999999999


Q ss_pred             HHHhcccc
Q 027029          220 IQSFLSPV  227 (229)
Q Consensus       220 ~~~l~~~~  227 (229)
                      -.-.++++
T Consensus        79 ~rw~Rsav   86 (236)
T COG4280          79 YRWIRSAV   86 (236)
T ss_pred             HHHHHHHH
Confidence            76665543

>TIGR00427 membrane protein, MarC family

Probab=91.11  E-value=2.7  Score=36.43  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=82.8

Q ss_pred             cEeehHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhcc
Q 027029           38 RLVLSGCLGALIVMTILSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANA  115 (229)
Q Consensus        38 ~~V~~G~~~Al~l~t~lav~~G~~l~~~--lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~  115 (229)
                      +...-.+..+.+++- +..++|+++-++  ++..-.+..+|++.+..|+.|+....++++.++|.+|.    +  +.+  
T Consensus        41 ~ia~~~~l~a~~ill-~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~----~--~~~--  111 (201)
T TIGR00427        41 KIAKKANISSFIILL-IFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGEGEDKQHKDEKEES----A--EID--  111 (201)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccc----c--ccc--
Confidence            345555555555554 666778877665  47778999999999999999996642211111110000    0  000  


Q ss_pred             CcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccCC---cEeehHHHHHHHHHHHHHH
Q 027029          116 GATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAV  192 (229)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~~---~~V~~G~~~a~~l~t~lav  192 (229)
                       + .           ..        .|.       .+--=-|.-|=-+.+.++++++.   ......+.....+.+.+.-
T Consensus       112 -~-i-----------ai--------vPL-------a~PllaGPGaIttvi~l~~~~~~~~~~~~~~~ai~~~~~~~~~~l  163 (201)
T TIGR00427       112 -S-I-----------AV--------VPL-------ALPLIAGPGAITTTMVLGARASSIGYKFLVVLAIALVALITWLLF  163 (201)
T ss_pred             -C-e-----------ee--------eec-------ccccccCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence             0 0           00        000       00000122222233333333211   1123344445556666666


Q ss_pred             HHhHHhhhhcCH---HHHHHHHHHHHHHHHHHHhccc
Q 027029          193 IGGKSLASQISE---KIVALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       193 ~~G~~l~~~i~~---~~v~~~~g~lFl~fg~~~l~~~  226 (229)
                      ..++++.+++.+   +.+.++.|++-...|+-+..++
T Consensus       164 ~~s~~l~~~LG~~g~~il~Ri~GliL~aIaVq~i~~G  200 (201)
T TIGR00427       164 RYSAFIIRRLGRTGINVITRIMGLLLAAIAVEFIVTG  200 (201)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            777888777754   5778999999999999888765

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=90.81  E-value=6.9  Score=35.33  Aligned_cols=186  Identities=19%  Similarity=0.187  Sum_probs=107.3

Q ss_pred             HHHHHHHHhhc---ccHHHHHHHHHHccCC----CcEeehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 027029           10 KSLAMTVLSEI---GDKTFFAAAILAMRHP----RRLVLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGF   82 (229)
Q Consensus        10 ~sf~~iflaEl---GDKTql~~~~LA~r~~----~~~V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~f   82 (229)
                      .++..+.+-|.   +|+-.+++++ +.+.+    ++..+.|...|++.=.++ ...|.++-+.-+  +.-++-|..++.-
T Consensus        18 ~~l~tl~~lE~vL~iDN~iviai~-~~~Lp~~qr~ral~~Gl~~A~v~R~~l-l~~~s~Ll~l~~--~l~~~fg~~L~~~   93 (254)
T COG0861          18 VALLTLILLEIVLGIDNAIVIAIL-ASKLPPKQRKKALFIGLAGALVLRIIL-LASISWLLTLTQ--PLLYIFGLYLLWR   93 (254)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH--HHHHHHHHHHHHH
Confidence            56667777775   8988877664 33433    467899999888765544 455666644322  2333357777777


Q ss_pred             HHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccCcccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhc--cCchH
Q 027029           83 GLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGE--WGDKS  160 (229)
Q Consensus        83 G~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE--~GDKT  160 (229)
                      ++.+++++.+     ++.++..|-.++.+    ++...     +  +.+..+      ...|+.+...+-++-  +.=-|
T Consensus        94 ~~~ll~~~~~-----~~~k~~~~~~~~~~----~~~~~-----~--~~~~~~------~~~f~~ai~~I~i~D~vFSlDS  151 (254)
T COG0861          94 DIKLLLGGLF-----LLFKATKELHERLE----GEEFF-----V--NGKLKK------ATPFWGAIIQIELADLVFSLDS  151 (254)
T ss_pred             HHHHHhcchh-----HHHHHHHHHhhhhc----ccccc-----c--cccccc------cCcHHHHHHHHHHHHHHHhhhH
Confidence            7777776532     11112211111111    00000     0  000000      122344433332221  11134


Q ss_pred             HHHHHHHHcccCCcEeehHHHHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhccc
Q 027029          161 QLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  226 (229)
Q Consensus       161 Qlati~LAa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~  226 (229)
                      =+++++++  .+|+.++.|.+.+...+=..+=.+.+++-++   .++.+.+...-+..|+.++.++
T Consensus       152 V~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~---p~l~~~~~~iL~~IG~kli~~~  212 (254)
T COG0861         152 VIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH---PTLKYLALVILLFIGVKLILEG  212 (254)
T ss_pred             HHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHhh
Confidence            56666666  6788899999999999988888888888664   5677777777788888887766

>PRK11469 hypothetical protein; Provisional

Probab=89.12  E-value=0.69  Score=39.68  Aligned_cols=42  Identities=17%  Similarity=0.042  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHHHHhcccc
Q 027029          185 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  227 (229)
Q Consensus       185 ~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg~~~l~~~~  227 (229)
                      .+++.++-..|+.+.+.+|+ +-|++++.+.+..|.|++++++
T Consensus        48 ~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~   89 (188)
T PRK11469         48 TLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGF   89 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            67788889999999998777 6699999999999999999874

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=88.89  E-value=11  Score=37.61  Aligned_cols=48  Identities=13%  Similarity=0.136  Sum_probs=38.5

Q ss_pred             eehHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHh
Q 027029           40 VLSGCLGALIVMTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL   87 (229)
Q Consensus        40 V~~G~~~Al~l~t~lav~~G~~l~~~lp~~~v~~~a~~lFl~fG~~~L   87 (229)
                      -.+|..+.+.+..+++..+|..+...+-..++.+..+++|+++|+.++
T Consensus       215 y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~  262 (571)
T PRK00293        215 YVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF  262 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            367788888888888888888776555556788888999999999987

>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function

Probab=80.60  E-value=3.5  Score=28.99  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHH
Q 027029          181 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  219 (229)
Q Consensus       181 ~~a~~l~t~lav~~G~~l~~~i~~~~v~~~~g~lFl~fg  219 (229)
                      ..-..+++.++...|+.+.+++ .++.+++++++++.+|
T Consensus        30 g~~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG   67 (67)
T PF02659_consen   30 GIFQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG   67 (67)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence            3445778888999999998855 5779999999998875

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=80.37  E-value=12  Score=32.75  Aligned_cols=149  Identities=17%  Similarity=0.163  Sum_probs=91.7

Q ss_pred             EeehHHHHHHHHHHHHHHHHHhhhhc--cccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccC
Q 027029           39 LVLSGCLGALIVMTILSAVVGWVAPN--LISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAG  116 (229)
Q Consensus        39 ~V~~G~~~Al~l~t~lav~~G~~l~~--~lp~~~v~~~a~~lFl~fG~~~L~~~~~~~~~~~e~~e~e~~~~~~~~~~~~  116 (229)
                      ...-....|+.++ .+..++|+.+-+  -+|.+-.+..+|++.+..|+.|+....+..+.+.|  |.+   ++       
T Consensus        42 v~~ra~i~a~~il-l~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~~~~~~~~e--~~~---~~-------  108 (203)
T COG2095          42 VALRASIIALLIL-LVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPTSRPKKKRE--EGQ---ED-------  108 (203)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCCcCcCCCCcc--cCc---cC-------
Confidence            4555555555554 445566777766  45888899999999999999999876443211110  000   00       


Q ss_pred             cccCCCCCchHhhhhccchhhhhhhHHHHHHHHHHHhhccCchHHHHHHHHHcccC-CcEeehHHHHHHHHHHHHHHHHh
Q 027029          117 ATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGG  195 (229)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~af~~~FlaE~GDKTQlati~LAa~~~-~~~V~~G~~~a~~l~t~lav~~G  195 (229)
                      ++.            .-        | +.      +--=-|+-|==+++.++.+++ ...+..++++...+++.+.-...
T Consensus       109 ~ia------------iv--------P-LA------~PliaGPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s  161 (203)
T COG2095         109 SIA------------IV--------P-LA------IPLIAGPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSS  161 (203)
T ss_pred             Cee------------ee--------c-cc------CccccCcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            000            00        0 00      000125555556666776654 34556666677777777777777


Q ss_pred             HHhhhhcC---HHHHHHHHHHHHHHHHHHHhcccc
Q 027029          196 KSLASQIS---EKIVALSGGVLFIVFGIQSFLSPV  227 (229)
Q Consensus       196 ~~l~~~i~---~~~v~~~~g~lFl~fg~~~l~~~~  227 (229)
                      ..+.+++-   .+.+.++-|++-..+|+-+..++.
T Consensus       162 ~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~Gl  196 (203)
T COG2095         162 SRIMRLLGKTGLNALTRIMGLLLAALGVQMILDGL  196 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777774   557788999999999998877654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00