Citrus Sinensis ID: 027041

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGFLWGRMQG
cccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEcccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccc
ccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHccHHHHHHccccHHHHHcccHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEEccccccHHHHcccccccEEEEEEHHHcccccccccccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccc
mailapasvskdplpssssaltplrsstqifgpkfkfrqigqtqlslstsfkkssgfklkgwrhsegitqefqvdKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQnladgqapkFMVIAcadsrvcpsnilgfqpgeafIVRNvanmvppcesgpsetNAALEFAVNSVKVENILVIGHSRCGGIHALMsmqdeedprslgesNLCKILLEVGFLWGRMQG
mailapasvskdplpssssaltplrSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGFLWGRMQG
MAILAPasvskdplpssssaltplrssTQIFGPKFKFRQIGQTQlslstsfkkssgfklkgWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGFLWGRMQG
*****************************IFGPKFKFRQIGQT************GFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC*******NAALEFAVNSVKVENILVIGHSRCGGIHALM*************SNLCKILLEVGFLWG****
******************************************************************************************DKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGFLW*****
********************LTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQ********GESNLCKILLEVGFLWGRMQG
*****************************IFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQV**********NECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGFLWGRMQ*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEVGFLWGRMQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
P46510330 Carbonic anhydrase OS=Fla N/A no 0.624 0.433 0.506 9e-34
P46511330 Carbonic anhydrase OS=Fla N/A no 0.567 0.393 0.534 2e-33
P46512330 Carbonic anhydrase 1 OS=F N/A no 0.567 0.393 0.534 2e-33
P46281329 Carbonic anhydrase OS=Fla N/A no 0.567 0.395 0.534 3e-33
P17067328 Carbonic anhydrase, chlor N/A no 0.475 0.332 0.581 1e-31
P16016319 Carbonic anhydrase, chlor N/A no 0.480 0.344 0.585 2e-31
P27140347 Carbonic anhydrase, chlor no no 0.484 0.319 0.571 2e-31
P27141321 Carbonic anhydrase, chlor N/A no 0.554 0.395 0.511 3e-31
P42737259 Carbonic anhydrase 2, chl no no 0.489 0.432 0.557 5e-31
P40880324 Carbonic anhydrase, chlor N/A no 0.497 0.351 0.521 2e-29
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function desciption
 Score =  143 bits (361), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 60  KGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119
           KG       T+  Q+     A + +   D  +++K  F+ FK +KF+ N   Y  LA GQ
Sbjct: 93  KGELEPVAATRIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQ 152

Query: 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCE-SGPSETNAALEFAVNSVK 178
           +PKFMV AC+DSRVCPS++L FQPGEAF+VRNVANMVPP + +  S   AA+E+AV  +K
Sbjct: 153 SPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLK 212

Query: 179 VENILVIGHSRCGGIHALMSMQDE 202
           V+ I VIGHSRCGGI  LM+  DE
Sbjct: 213 VQEIFVIGHSRCGGIKGLMTFPDE 236
Reversible hydration of carbon dioxide.
Flaveria bidentis (taxid: 4224)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function description
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function description
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
356554783301 PREDICTED: carbonic anhydrase, chloropla 0.890 0.677 0.570 2e-60
359475658300 PREDICTED: carbonic anhydrase 2, chlorop 0.816 0.623 0.630 2e-60
296087414301 unnamed protein product [Vitis vinifera] 0.820 0.624 0.630 2e-60
255645634301 unknown [Glycine max] 0.890 0.677 0.566 6e-60
356549520301 PREDICTED: carbonic anhydrase, chloropla 0.890 0.677 0.566 7e-60
255563296313 carbonic anhydrase, putative [Ricinus co 0.895 0.654 0.578 2e-59
388516167308 unknown [Lotus japonicus] 0.868 0.646 0.553 7e-58
388502556308 unknown [Lotus japonicus] 0.886 0.659 0.543 8e-58
297802642301 carbonic anhydrase family protein [Arabi 0.834 0.634 0.579 8e-57
224140715256 predicted protein [Populus trichocarpa] 0.685 0.613 0.681 1e-56
>gi|356554783|ref|XP_003545722.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 150/212 (70%), Gaps = 8/212 (3%)

Query: 1   MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPK-FKFRQIGQTQLSLSTSFKKSSGFKL 59
           MA+ AP S+S DP  S S+  T       I GP   K     QT   L T+ +++ GF L
Sbjct: 1   MAVPAPFSLSSDPFASKSATST-------ILGPAVLKIGNFEQTHFGLFTALRRNQGFTL 53

Query: 60  KGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQ 119
           K      G T++   ++L+T A+ E+ CD F+ +K RFLSFKK K+M+N+E ++NLA  Q
Sbjct: 54  KASMGPAGFTEKLNNNRLKTLADAEDGCDIFNDLKDRFLSFKKNKYMKNIEQFENLAKVQ 113

Query: 120 APKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKV 179
            PKFMVIACADSRVCPSN+LGFQPGEAF++RNVAN+VP  ESGPSETNAALEFAVNS+ V
Sbjct: 114 TPKFMVIACADSRVCPSNVLGFQPGEAFMIRNVANLVPTFESGPSETNAALEFAVNSLLV 173

Query: 180 ENILVIGHSRCGGIHALMSMQDEEDPRSLGES 211
           ENILVIGHS CGGI ALM MQD++  RS  +S
Sbjct: 174 ENILVIGHSCCGGIRALMGMQDDDVERSFIKS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475658|ref|XP_002263870.2| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087414|emb|CBI34003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255645634|gb|ACU23311.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356549520|ref|XP_003543141.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255563296|ref|XP_002522651.1| carbonic anhydrase, putative [Ricinus communis] gi|223538127|gb|EEF39738.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388516167|gb|AFK46145.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388502556|gb|AFK39344.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297802642|ref|XP_002869205.1| carbonic anhydrase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315041|gb|EFH45464.1| carbonic anhydrase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224140715|ref|XP_002323724.1| predicted protein [Populus trichocarpa] gi|222866726|gb|EEF03857.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
TAIR|locus:2134218302 BCA5 "beta carbonic anhydrase 0.598 0.453 0.669 1.1e-46
TAIR|locus:2196292290 BCA6 "beta carbonic anhydrase 0.598 0.472 0.574 2e-40
TAIR|locus:2016109280 BCA4 "beta carbonic anhydrase 0.515 0.421 0.563 2e-31
TAIR|locus:2084198347 CA1 "carbonic anhydrase 1" [Ar 0.532 0.351 0.532 4.9e-30
TAIR|locus:2185460331 CA2 "carbonic anhydrase 2" [Ar 0.537 0.371 0.52 4.9e-30
TAIR|locus:2034797258 BCA3 "beta carbonic anhydrase 0.558 0.496 0.526 1.6e-29
TIGR_CMR|CBU_0139206 CBU_0139 "carbonic anhydrase" 0.489 0.543 0.443 7e-22
TIGR_CMR|GSU_2307211 GSU_2307 "carbonic anhydrase" 0.441 0.478 0.495 3.9e-21
TIGR_CMR|CJE_0288211 CJE_0288 "carbonic anhydrase" 0.458 0.497 0.435 5.7e-20
TIGR_CMR|SPO_3715216 SPO_3715 "carbonic anhydrase, 0.454 0.481 0.457 3.1e-19
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 95/142 (66%), Positives = 114/142 (80%)

Query:    67 GITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFM-ENLEHYQNLADGQAPKFMV 125
             G+TQE        A + +N  D FD MK RFL+FKK K++ ++ EHY+NLAD QAPKF+V
Sbjct:    63 GLTQEAN----GVAIDRQNNTDVFDDMKQRFLAFKKLKYIRDDFEHYKNLADAQAPKFLV 118

Query:   126 IACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVI 185
             IACADSRVCPS +LGFQPG+AF VRN+AN+VPP ESGP+ET AALEF+VN++ VENILVI
Sbjct:   119 IACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVI 178

Query:   186 GHSRCGGIHALMSMQDEEDPRS 207
             GHSRCGGI ALM M+DE D RS
Sbjct:   179 GHSRCGGIQALMKMEDEGDSRS 200
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3715 SPO_3715 "carbonic anhydrase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.691
4th Layer4.2.1.10.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
PLN03006301 PLN03006, PLN03006, carbonate dehydratase 1e-72
cd00884190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 2e-61
PLN02154290 PLN02154, PLN02154, carbonic anhydrase 6e-52
PLN00416258 PLN00416, PLN00416, carbonate dehydratase 1e-44
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 1e-38
PLN03019330 PLN03019, PLN03019, carbonic anhydrase 2e-37
PLN03014347 PLN03014, PLN03014, carbonic anhydrase 2e-36
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 3e-36
COG0288207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 2e-34
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 6e-32
cd00883182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 1e-28
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 2e-19
PRK10437220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 9e-17
cd03379142 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) 3e-10
PRK15219245 PRK15219, PRK15219, carbonic anhydrase; Provisiona 5e-08
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information 
 Score =  222 bits (567), Expect = 1e-72
 Identities = 115/202 (56%), Positives = 145/202 (71%), Gaps = 11/202 (5%)

Query: 8   SVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFK-KSSGFKLKGWRHSE 66
           SVS DP   SS++L  L++   IFGP    +    TQL +  SF+ K++  ++     + 
Sbjct: 9   SVSHDPF--SSTSLLNLQTQA-IFGPNHSLKT---TQLRIPASFRRKATNLQVMASGKTP 62

Query: 67  GITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVI 126
           G+TQE        A + +N  D FD MK RFL+FKK K+M++ EHY+NLAD QAPKF+VI
Sbjct: 63  GLTQEAN----GVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVI 118

Query: 127 ACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIG 186
           ACADSRVCPS +LGFQPG+AF VRN+AN+VPP ESGP+ET AALEF+VN++ VENILVIG
Sbjct: 119 ACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIG 178

Query: 187 HSRCGGIHALMSMQDEEDPRSL 208
           HSRCGGI ALM M+DE D RS 
Sbjct: 179 HSRCGGIQALMKMEDEGDSRSF 200

Length = 301
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|239474 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|237927 PRK15219, PRK15219, carbonic anhydrase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
PLN03006301 carbonate dehydratase 100.0
PLN03014347 carbonic anhydrase 100.0
PLN03019330 carbonic anhydrase 100.0
PLN00416258 carbonate dehydratase 100.0
cd00884190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 100.0
COG0288207 CynT Carbonic anhydrase [Inorganic ion transport a 100.0
PRK10437220 carbonic anhydrase; Provisional 100.0
PLN02154290 carbonic anhydrase 100.0
cd00883182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 100.0
PRK15219245 carbonic anhydrase; Provisional 100.0
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 100.0
KOG1578276 consensus Predicted carbonic anhydrase involved in 99.97
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 99.97
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 99.96
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 99.94
KOG1578 276 consensus Predicted carbonic anhydrase involved in 98.42
>PLN03006 carbonate dehydratase Back     alignment and domain information 
Probab=100.00  E-value=4.9e-55  Score=397.64  Aligned_cols=210  Identities=52%  Similarity=0.812  Sum_probs=181.9

Q ss_pred             CCCCCCCccccCCCCCCCCCCCCCCCcccccCCCccccchhhhHHHHHHHhhhc-CCcccccccccccchhhhccccchh
Q 027041            1 MAILAPASVSKDPLPSSSSALTPLRSSTQIFGPKFKFRQIGQTQLSLSTSFKKS-SGFKLKGWRHSEGITQEFQVDKLET   79 (229)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~t~~l~~~~~~~   79 (229)
                      +|+|+++|||+|||+|+|+.  +.+.....+|..+    ...|+++|...+|++ .+++.+|++|+++||+||+....+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-   74 (301)
T PLN03006          2 AATPTHFSVSHDPFSSTSLL--NLQTQAIFGPNHS----LKTTQLRIPASFRRKATNLQVMASGKTPGLTQEANGVAID-   74 (301)
T ss_pred             CCCCCCcccccCCcchhhhh--ccCcceeecCCcc----cceeEecccccccccccchhhhhhhchHHHHHHHhhccCC-
Confidence            47899999999999999996  2233344445444    667889999988775 488899999999999999865533 


Q ss_pred             hHhhhcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCC
Q 027041           80 AAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC  159 (229)
Q Consensus        80 ~~~~~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~  159 (229)
                         ..++.+++++|++||.+|+..++.+++++|+++++||+|+++||+||||||+|+.|||++|||+||+||+||+|+|+
T Consensus        75 ---~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~  151 (301)
T PLN03006         75 ---RQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPY  151 (301)
T ss_pred             ---CCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCc
Confidence               12468999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCCCCCCccHHHHHhhhhhhH
Q 027041          160 ESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSLGESNLCKILLEV  220 (229)
Q Consensus       160 d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~~~~~~~i~~WL~~i~~~~  220 (229)
                      +.+..++.++|||||.+|+|++|||||||+||||+|+++..+.+...++|+.|+..+.+..
T Consensus       152 d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~~~~~I~~wv~~~~~a~  212 (301)
T PLN03006        152 ESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSRSFIHNWVVVGKKAK  212 (301)
T ss_pred             cccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCCchhHHHHHHHHHHHHH
Confidence            8655679999999999999999999999999999999987666544569999998666543

>PLN03014 carbonic anhydrase Back     alignment and domain information
>PLN03019 carbonic anhydrase Back     alignment and domain information
>PLN00416 carbonate dehydratase Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>PLN02154 carbonic anhydrase Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1ekj_A221 The X-Ray Crystallographic Structure Of Beta Carbon 4e-32
3e3g_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 4e-18
3e24_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 1e-17
3e28_A229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 1e-17
2a8c_A229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 1e-17
3mf3_A221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 1e-17
3e2x_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 4e-17
3e1v_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 5e-17
3ucj_A227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 3e-14
3eyx_A216 Crystal Structure Of Carbonic Anhydrase Nce103 From 3e-14
3qy1_A223 1.54a Resolution Crystal Structure Of A Beta-Carbon 3e-14
1i6p_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 1e-13
1i6o_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 1e-13
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 2e-13
2w3n_A239 Structure And Inhibition Of The Co2-Sensing Carboni 6e-13
2w3q_A243 Structure And Inhibition Of The Co2-Sensing Carboni 6e-13
2a5v_A213 Crystal Structure Of M. Tuberculosis Beta Carbonic 1e-10
1ym3_A215 Crystal Structure Of Carbonic Anhydrase Rv3588c Fro 1e-10
1g5c_A170 Crystal Structure Of The 'cab' Type Beta Class Carb 2e-04
3vqj_A219 Crystal Structutre Of Thiobacillus Thioparus Thi115 5e-04
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 91  DKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVR 150
           +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+VR
Sbjct: 15  ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 151 NVANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSM 199
           NVAN+VPP +    + T AA+E+AV  +KV NI+VIGHS CGGI  L+S 
Sbjct: 75  NVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSF 124
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From Saccharomyces Cerevisiae Length = 216 Back     alignment and structure
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 239 Back     alignment and structure
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 243 Back     alignment and structure
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic Anhydrase, Rv3588c, Tetrameric Form Length = 213 Back     alignment and structure
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic Anhydrase From Methanobacterium Thermoautotrophicum Length = 170 Back     alignment and structure
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115 Carbonyl Sulfide Hydrolase Length = 219 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 1e-56
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 5e-49
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 2e-48
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 3e-48
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 1e-47
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 1e-45
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 4e-45
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 7e-45
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 4e-40
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 6e-27
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 4e-24
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 1e-22
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 2e-22
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  178 bits (454), Expect = 1e-56
 Identities = 64/130 (49%), Positives = 92/130 (70%), Gaps = 1/130 (0%)

Query: 79  TAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNI 138
           ++++   + +  +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++
Sbjct: 3   SSSDGIPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHV 62

Query: 139 LGFQPGEAFIVRNVANMVPPCE-SGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALM 197
           L FQPGEAF+VRNVAN+VPP + +  + T AA+E+AV  +KV NI+VIGHS CGGI  L+
Sbjct: 63  LDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLL 122

Query: 198 SMQDEEDPRS 207
           S   +    +
Sbjct: 123 SFPFDGTYST 132
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 100.0
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 100.0
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 100.0
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 100.0
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 100.0
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 100.0
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 100.0
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 100.0
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 99.98
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 99.97
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 99.96
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=100.00  E-value=7.7e-42  Score=296.74  Aligned_cols=138  Identities=48%  Similarity=0.774  Sum_probs=121.8

Q ss_pred             hcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCCCCcEEEEeccCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCC
Q 027041           84 ENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP  163 (229)
Q Consensus        84 ~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItCsDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~  163 (229)
                      ..+++++++|++||++|++.++.+++++|++|+.+|+|+++||+||||||+|+.+||++|||+||+||+||+|+|++.+.
T Consensus         8 ~~p~~~l~~L~~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~~~   87 (221)
T 1ekj_A            8 IPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAK   87 (221)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCcccccc
Confidence            34678999999999999999988899999999999999999999999999999999999999999999999999987543


Q ss_pred             -chhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCCCC-CCccHHHHHhhhhhhHH
Q 027041          164 -SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEED-PRSLGESNLCKILLEVG  221 (229)
Q Consensus       164 -~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~~~-~~~~i~~WL~~i~~~~~  221 (229)
                       .++.++|||||.+|||++|||||||+|||++|++...+.+. ..++++.||+.+.+...
T Consensus        88 ~~~~~asleyAv~~L~v~~IvV~GHs~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~~~~  147 (221)
T 1ekj_A           88 YAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKA  147 (221)
T ss_dssp             CHHHHHHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHH
T ss_pred             cchhHHHHHHHHHhcCCCEEEEEccCCCCceeeecccccccccchHHHHHHHHhhhhHHH
Confidence             35789999999999999999999999999999998765442 24699999999888754
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1ekja_210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 2e-37
d1i6pa_214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 4e-33
d1ddza2239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 5e-32
d1ddza1242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 2e-29
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 2e-23
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  128 bits (322), Expect = 2e-37
 Identities = 67/132 (50%), Positives = 87/132 (65%), Gaps = 1/132 (0%)

Query: 90  FDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIV 149
            +++K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+V
Sbjct: 3   SERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVV 62

Query: 150 RNVANMVPPCESGPS-ETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSL 208
           RNVAN+VPP +      T AA+E+AV  +KV NI+VIGHS CGGI  L+S   +    + 
Sbjct: 63  RNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTD 122

Query: 209 GESNLCKILLEV 220
                 KI L  
Sbjct: 123 FIEEWVKIGLPA 134
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1ddza2239 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1ekja_210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 100.0
d1i6pa_214 beta-carbonic anhydrase {Escherichia coli [TaxId: 100.0
d1ddza1242 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 99.97
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Red alga (Porphyridium purpureum) [TaxId: 35688]

Probab=100.00  E-value=2.5e-43  Score=307.34  Aligned_cols=161  Identities=24%  Similarity=0.320  Sum_probs=142.2

Q ss_pred             HHhhhcCCcccccccccccchhhhccccchhhHhhhcHHHHHHHHHHHHHhhhhhhhhhCHHHHHhhhcCCCCcEEEEec
Q 027041           49 TSFKKSSGFKLKGWRHSEGITQEFQVDKLETAAEVENECDFFDKMKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIAC  128 (229)
Q Consensus        49 ~~~~~~~~~~~~a~~~~~~~t~~l~~~~~~~~~~~~~~~~~~~~Ll~gn~~f~~~~~~~~~~~~~~l~~gQ~P~~lvItC  128 (229)
                      .+++-+.++..++.++.+.+|+++......      ...+.+++|+++|++|++..+.++|++|++|++||+|+++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~n~~~~~~~~~~~p~~f~~la~gQ~P~~~vi~C   78 (239)
T d1ddza2           5 PLVQVTKGGESELDSTMEKLTAELVQQTPG------KLKEGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGC   78 (239)
T ss_dssp             CCCCSSSSCCCHHHHHHHHHHHHHHTSCTT------CCCCCSSHHHHHHHHHHHHHHHHCTTHHHHHTTCCCCSEEEEEE
T ss_pred             CcceecccchhhHHhhhHhhhhhhhccchh------hHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhcCCCCCeEEEee
Confidence            456778888889999999999999764321      22356799999999999999999999999999999999999999


Q ss_pred             cCCCCChhhhcCCCCCcEEEEEccCCCCCCCCCCCchhhHHHHHHHHhcCCceEEEEccCcchHHHHhhhCCCCCCCCcc
Q 027041          129 ADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPRSL  208 (229)
Q Consensus       129 sDSRV~pe~ilg~~pGd~FVvRNaGN~V~~~d~~~~~~~asLeyAV~~L~V~~IVV~GHtdCGai~a~~~~~~~~~~~~~  208 (229)
                      |||||+|+.|||++|||+||+||+||+|++.|   .++.++||||+.+|||++|||||||+|||+++++.....    ++
T Consensus        79 sDSRv~pe~if~~~~GdlFVvRNaGN~v~~~d---~~~~~sleyAv~~L~v~~IvV~GHt~CGav~aa~~~~~~----~~  151 (239)
T d1ddza2          79 ADSRVPANQIINLPAGEVFVHRNIANQCIHSD---MSFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALGDSRL----GL  151 (239)
T ss_dssp             TTCSSCHHHHTTCCTTSEEEEEETTCCCCTTC---HHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHTTSCCCC----TT
T ss_pred             ecCCCCHHHHcCCCCCceEEEeeecCcCCCcc---chhhhhhhhhheecCccEEEEecCcCchhhHHHhhcccc----cc
Confidence            99999999999999999999999999999865   478999999999999999999999999999999975543    48


Q ss_pred             HHHHHhhhhhhHHH
Q 027041          209 GESNLCKILLEVGF  222 (229)
Q Consensus       209 i~~WL~~i~~~~~~  222 (229)
                      +..|+..+.+....
T Consensus       152 ~~~~~~~~~~~~~~  165 (239)
T d1ddza2         152 IDNWLRHIRDVRRH  165 (239)
T ss_dssp             HHHHTHHHHHHHHT
T ss_pred             chhHHHHHHHHHHH
Confidence            99999988776543
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure