Citrus Sinensis ID: 027051

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MQNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCGRRTKRKIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSYHLI
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHccHHHHHHccHHHHHHHHHHHHccccccccccccEEEEEEccccccccccEEEEEEEEccccEEEcccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHcHHHHHHHHHHccHHHHHHHHccEEEcccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEccccEEEEccccccEEEEEEEccccccHccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHcccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccEEEEEcc
Coil and Loop (DISEMBL)
mqneekgvpnFWLTAMKNNSLLAQEITKADEEALKYLIDIkssrlvccpefklefffgpnpyfknyvlakkfIMIDEVKLIFDEAIGSkikwypekcltrecstrkpkksFFNFfkslefpfydesiDVKLLHQLEHDYKIGVTIKKEIVCHAISwfcgdatcgrrtkrkieydnpaagnlVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLcqpldtkvsyhli
Flexible Loop (DISEMBL)
mqneekgvpnfwLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLIFDEAIGSkikwypekcltrecstrkpkkSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCGRRTKRkieydnpaagnlvqkieSLRKIEIELNKLEAEFLEKRRKEEanyvklcqpldtkvsyhli
Low Complexity Region (SEG)
MQNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRkpkksffnffkslefpfYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCGRRTKRKIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSYHLI
Disordered region (IsUnstruct)
*********NFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCGRRTKRKIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRR*EEANYVKLCQPLDTK******
Disordered Region (DISOPRED)
***EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRE*S*RKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDA*****************************************************KLCQPLDTKVSYHLI
Disordered Region (DISEMBL)
MQNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCGRRTKRKIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSYHLI
Disordered Region (DISPRO)
*****KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCGRRTKRKIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSYHLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCGRRTKRKIEYDNPAAGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEANYVKLCQPLDTKVSYHLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
O59797	393	Putative nucleosome assem	yes	no	0.689	0.402	0.370	3e-22
P78920	379	Putative nucleosome assem	no	no	0.663	0.401	0.342	7e-16
Q924R9	536	Nucleosome assembly prote	yes	no	0.689	0.294	0.311	1e-14
Q99733	375	Nucleosome assembly prote	yes	no	0.689	0.421	0.324	2e-14
Q78ZA7	375	Nucleosome assembly prote	yes	no	0.681	0.416	0.327	2e-14
Q5U2Z3	386	Nucleosome assembly prote	no	no	0.681	0.404	0.327	3e-14
Q794H2	544	Nucleosome assembly prote	no	no	0.672	0.283	0.311	8e-14
Q2TA40	386	Nucleosome assembly prote	yes	no	0.681	0.404	0.316	2e-13
P25293	417	Nucleosome assembly prote	yes	no	0.672	0.369	0.338	3e-13
P51860	460	Nucleosome assembly prote	no	no	0.646	0.321	0.335	6e-13

>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC364.06 PE=1 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 96/181 (53%), Gaps = 23/181 (12%)

Query: 3   NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPY 62
           ++ KG+P FWLTAMKN   L++ IT  DE AL +L+DI+ S  +  P FKLEF F  NP+
Sbjct: 159 DDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRIS-YMEKPGFKLEFEFAENPF 217

Query: 63  FKNYVLAKKFIMIDEVK----LIFDEAIGSKIKWYPEKCLTRECSTRK------------ 106
           F N +L K +  ++E       ++D A G K+ W     LT    T+K            
Sbjct: 218 FTNKILTKTYYYMEESGPSNVFLYDHAEGDKVDWKENADLTVRTVTKKQRNKNTKQTRVV 277

Query: 107 ----PKKSFFNFFK--SLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGD 160
               P+ SFFNFF   +      +ES   +L   LE DY+IG   K++++  A+ WF G+
Sbjct: 278 KVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWFTGE 337

Query: 161 A 161
           A
Sbjct: 338 A 338

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P78920|YGNB_SCHPO Putative nucleosome assembly protein C2D10.11C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2D10.11c PE=2 SV=2

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 23/175 (13%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVC-CPEFKLEFFFGPNPYFK 64
           KG+P FWLT + N  L+ + IT  DE  L+ L DI+ + L      +KLEF F  N YF 
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFT 223

Query: 65  NYVLAKKFIMIDEV----KLIFDEAIGSKIKWY-PEKCLTRECSTRK------------- 106
           N +L K +   D++    + ++D A G KI W  PEK LT    T+K             
Sbjct: 224 NKILTKTYYYKDDLSPSGEFLYDHAEGDKINWIKPEKNLTVRVETKKQRNRKTNQTRLVR 283

Query: 107 ---PKKSFFNFFKSLEFPFYDESIDVKLLHQ-LEHDYKIGVTIKKEIVCHAISWF 157
              P  SFFNFF   +    +    +    + LE DY++G   K +I+  AI  F
Sbjct: 284 TTVPNDSFFNFFSPPQLDDDESDDGLDDKTELLELDYQLGEVFKDQIIPLAIDCF 338

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q924R9|NP1L3_RAT Nucleosome assembly protein 1-like 3 OS=Rattus norvegicus GN=Nap1l3 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 25/183 (13%)

Query: 2   QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDI--KSSRLVCCPEFKLEFFFGP 59
           ++  +G+P++WLT +KN   L   I K DE  LK+L D+  K S       +  EF F P
Sbjct: 336 EDPPRGIPDYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPISYTFEFHFLP 395

Query: 60  NPYFKNYVLAKKFIM---IDEVKLIF------DEAIGSKIKWYPEKCLTRECSTRK---- 106
           NPYF+N +L K +I+    D     F      +E  G KI W   K +T    +R     
Sbjct: 396 NPYFRNELLMKTYIIRSKPDHYDPFFAWGWEIEECKGCKIDWRRGKDVTVTTRSRPAITG 455

Query: 107 ---------PKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWF 157
                    P  SFFNFF   E P   + ++ K    L+ D++IG  +   ++  +I +F
Sbjct: 456 EIEVQPRVVPNASFFNFFSPPEIPLIGK-LEPKEDAILDEDFEIGQILHDNVILKSIYYF 514

Query: 158 CGD 160
            G+
Sbjct: 515 TGE 517

Rattus norvegicus (taxid: 10116)

>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 27/185 (14%)

Query: 4   EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKS--SRLVCCPEFKLEFFFGPNP 61
           + KG+P FW T  +N  +L++ + + DE  LK+L DIK   S       F LEF F PN 
Sbjct: 155 DPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPND 214

Query: 62  YFKNYVLAKKFIM------IDEVKLIFDEAI---GSKIKWYPEKCLT------------- 99
           YF N VL K + M       D       E +   G  I W   K +T             
Sbjct: 215 YFTNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGR 274

Query: 100 ---RECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISW 156
              R  + + P +SFFNFF  L+     ES+D      L  D++IG   ++ IV  A+ +
Sbjct: 275 GTVRTITKQVPNESFFNFFNPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLY 334

Query: 157 FCGDA 161
           F G+A
Sbjct: 335 FTGEA 339

Homo sapiens (taxid: 9606)

>sp|Q78ZA7|NP1L4_MOUSE Nucleosome assembly protein 1-like 4 OS=Mus musculus GN=Nap1l4 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 27/183 (14%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKS--SRLVCCPEFKLEFFFGPNPYF 63
           KG+P FW T  +N  +L++ + + DE  LK+L DIK   S       F LEF F PN YF
Sbjct: 157 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYF 216

Query: 64  KNYVLAKKFIM------IDEVKLIFDEAI---GSKIKWYPEKCLT--------------- 99
            N VL K + M       D       E +   G  I W   K +T               
Sbjct: 217 TNPVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGT 276

Query: 100 -RECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFC 158
            R  + + P +SFFNFF  L+     ES+D      L  D++IG   ++ IV  A+ +F 
Sbjct: 277 VRTITKQVPNESFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFT 336

Query: 159 GDA 161
           G+A
Sbjct: 337 GEA 339

Mus musculus (taxid: 10090)

>sp|Q5U2Z3|NP1L4_RAT Nucleosome assembly protein 1-like 4 OS=Rattus norvegicus GN=Nap1l4 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 27/183 (14%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKS--SRLVCCPEFKLEFFFGPNPYF 63
           KG+P FW T  +N  +L++ + + DE  LK+L DIK   S       F LEF F PN YF
Sbjct: 157 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYF 216

Query: 64  KNYVLAKKFIM------IDEVKLIFDEAI---GSKIKWYPEKCLT--------------- 99
            N VL K + M       D       E +   G  I W   K +T               
Sbjct: 217 TNPVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGT 276

Query: 100 -RECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFC 158
            R  + + P +SFFNFF  L+     ES+D      L  D++IG   ++ IV  A+ +F 
Sbjct: 277 VRTITKQVPNESFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFT 336

Query: 159 GDA 161
           G+A
Sbjct: 337 GEA 339

Rattus norvegicus (taxid: 10116)

>sp|Q794H2|NP1L3_MOUSE Nucleosome assembly protein 1-like 3 OS=Mus musculus GN=Nap1l3 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 26/180 (14%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDI--KSSRLVCCPEFKLEFFFGPNPYF 63
           KG+P++WLT +KN   L   I K DE  LK+L D+  K S       +  EF F PNPYF
Sbjct: 347 KGIPDYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPIGYTFEFHFLPNPYF 406

Query: 64  KNYVLAKKFIM---IDEVKLIF------DEAIGSKIKWYPEKCLTRECSTRK-------- 106
           +N +L K +I+    D     F      +E  G KI W   K +T   +  +        
Sbjct: 407 RNELLMKTYIIRSKPDHYDPFFAWGWEIEECKGCKIDWRRGKDVTVTTTRSRPGITGEIE 466

Query: 107 ------PKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGD 160
                 P  SFFNFF   E P   + ++ +    L+ D++IG  +   ++  +I +F G+
Sbjct: 467 VQPRVVPNASFFNFFSPPEIPLIGK-LEPREDAILDEDFEIGQILHDNVILKSIYYFTGE 525

Mus musculus (taxid: 10090)

>sp|Q2TA40|NP1L4_BOVIN Nucleosome assembly protein 1-like 4 OS=Bos taurus GN=NAP1L4 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 27/183 (14%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKS--SRLVCCPEFKLEFFFGPNPYF 63
           +G+P FW T  +N  +L++ + + DE  LK+L DIK   S       F LEF F P+ YF
Sbjct: 157 RGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPDDYF 216

Query: 64  KNYVLAKKFIM------IDEVKLIFDEAI---GSKIKWYPEKCLT--------------- 99
            N VL K + M       D       E +   G  I W   K +T               
Sbjct: 217 TNPVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGT 276

Query: 100 -RECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFC 158
            R  + + P  SFFNFF  L      ES+D      L  D++IG   ++ IV  A+ +F 
Sbjct: 277 VRTITKQVPNDSFFNFFSPLRASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFT 336

Query: 159 GDA 161
           G+A
Sbjct: 337 GEA 339

Bos taurus (taxid: 9913)

>sp|P25293|NAP1_YEAST Nucleosome assembly protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAP1 PE=1 SV=2

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 87/180 (48%), Gaps = 26/180 (14%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC-PEFKLEFFF--GPNPY 62
           KG+P+FWLTA++N  ++   IT  D E L+YL DI    L    P FKL F F    NP+
Sbjct: 183 KGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPF 242

Query: 63  FKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWYPEK-CLTRECSTRK----------- 106
           F N +L K +    E+      I+D A G +I W      +T +   RK           
Sbjct: 243 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRT 302

Query: 107 -----PKKSFFNFFKS--LEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCG 159
                P +SFFNFF    ++    DE ++  L  +L  DY IG  +K +++  A+ WF G
Sbjct: 303 IEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTG 362

Acidic protein, which assembles histones into an octamer (in-vitro). Involved in the regulation of the localization and the function of the septins during mitosis. Involved in the function of B-type cyclins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 OS=Mus musculus GN=Nap1l2 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 84/191 (43%), Gaps = 43/191 (22%)

Query: 3   NEE--KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE---FKLEFFF 57
           NEE  KG+P+FWLT +KN   L   I K DE  LK L DIK  +L    E   F LEF F
Sbjct: 233 NEEDPKGIPDFWLTVLKNVEALTPMIKKYDEPILKLLTDIK-VKLSDPGEPLSFTLEFHF 291

Query: 58  GPNPYFKNYVLAKKFIMIDEV---------KLIFDEAIGSKIKWYPEKCLT--------- 99
            PN YFKN +L K +++  ++             + A G  I W   K +T         
Sbjct: 292 KPNEYFKNELLTKTYVLKSKLACYDPHPYRGTAIEYATGCDIDWNEGKNVTLRTIKKKQR 351

Query: 100 -------RECSTRKPKKSFFNFFK--SLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIV 150
                  R  +   PK SFFNFF    +     DE+ D  L H L          +  I+
Sbjct: 352 HRVWGTVRTVTEDFPKDSFFNFFSPHGISLNGGDENDDFLLGHNL----------RTYII 401

Query: 151 CHAISWFCGDA 161
             ++ +F GDA
Sbjct: 402 PRSVLFFSGDA 412

Acidic protein which may be involved in interactions with other proteins or DNA.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
372477765	377	nucleosome assembly protein [Malus x dom	0.707	0.429	0.502	1e-42
255641276	363	unknown [Glycine max]	0.711	0.449	0.489	3e-40
351723765	358	nucleosome assembly protein 1 [Glycine m	0.711	0.455	0.489	8e-40
255646072	369	unknown [Glycine max]	0.711	0.441	0.494	8e-40
356530381	359	PREDICTED: nucleosome assembly protein 1	0.698	0.445	0.497	3e-39
297738653	386	unnamed protein product [Vitis vinifera]	0.703	0.417	0.494	3e-39
225444889	368	PREDICTED: nucleosome assembly protein 1	0.703	0.437	0.494	3e-39
356530383	364	PREDICTED: nucleosome assembly protein 1	0.698	0.439	0.497	3e-39
356530387	365	PREDICTED: nucleosome assembly protein 1	0.685	0.430	0.505	4e-39
356530389	370	PREDICTED: nucleosome assembly protein 1	0.685	0.424	0.505	5e-39

>gi|372477765|gb|AEX97077.1| nucleosome assembly protein [Malus x domestica]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/181 (50%), Positives = 119/181 (65%), Gaps = 19/181 (10%)

Query: 3   NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPY 62
            EEKGVP+FWLTAMK N +L++EIT+ DE ALK+L DIK SR+     FKLEFFF  NPY
Sbjct: 120 GEEKGVPDFWLTAMKTNDVLSEEITERDEGALKHLKDIKWSRIDDPKGFKLEFFFDTNPY 179

Query: 63  FKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKK------------- 109
           FKN +L K + M+DE + I ++AIG++I+WYP KCLT++   +KP+K             
Sbjct: 180 FKNSILTKTYHMVDENEPILEKAIGTEIEWYPGKCLTQKLLKKKPRKGSKNAKPVTKTED 239

Query: 110 --SFFNFFKSLEFPFYDESID----VKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATC 163
             SFFNFF   E P  DE +D     +L +Q+E DY IG TI+ +I+ HA SWF G+A  
Sbjct: 240 CASFFNFFSPPEVPKEDEDLDEESAEELQNQMEQDYDIGSTIRDKIIPHATSWFTGEAVH 299

Query: 164 G 164
           G
Sbjct: 300 G 300

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641276|gb|ACU20915.1| unknown [Glycine max]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 118/182 (64%), Gaps = 19/182 (10%)

Query: 2   QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNP 61
           +N+EKGVP+FWL AMKNN +LA+EI++ DE ALK+L DIK SR+     FKL+FFF  NP
Sbjct: 115 ENKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLDFFFDTNP 174

Query: 62  YFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTR---------ECSTRKPK---- 108
           YF N VL K + MIDE + I ++AIG++++WYP KCLT+              KP     
Sbjct: 175 YFSNTVLTKTYHMIDEDEPILEKAIGTEVEWYPGKCLTQKVLKKKPKKGSKNAKPITKTE 234

Query: 109 --KSFFNFFKSLEFPFYDESID----VKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDAT 162
             +SFFNFFK  E P  D  ID     +L +Q+E DY IG T++ +I+ HA+SWF G+A 
Sbjct: 235 SCESFFNFFKPPEVPEDDADIDEDLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAA 294

Query: 163 CG 164
            G
Sbjct: 295 QG 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723765|ref|NP_001238314.1| nucleosome assembly protein 1 [Glycine max] gi|1161252|gb|AAA88792.1| nucleosome assembly protein 1 [Glycine max]

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 118/182 (64%), Gaps = 19/182 (10%)

Query: 2   QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNP 61
           +N+EKGVP+FWL AM+NN +LA+EI++ DE ALK+L DIK SR+     FKL+FFF  NP
Sbjct: 115 ENKEKGVPSFWLNAMENNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLDFFFDTNP 174

Query: 62  YFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTR---------ECSTRKPK---- 108
           YF N VL K + MIDE + I ++AIG++I+WYP KCLT+              KP     
Sbjct: 175 YFSNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTE 234

Query: 109 --KSFFNFFKSLEFPFYDESID----VKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDAT 162
             +SFFNFFK  E P  D  ID     +L +Q+E DY IG T++ +I+ HA+SWF G+A 
Sbjct: 235 SCESFFNFFKPPEVPEDDADIDEDLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAA 294

Query: 163 CG 164
            G
Sbjct: 295 QG 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646072|gb|ACU23523.1| unknown [Glycine max]

 Score =  169 bits (428), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 117/182 (64%), Gaps = 19/182 (10%)

Query: 2   QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNP 61
           +N+EKGVP+FWL AMKNN +LA+EI++ DE ALK+L DIK SR+     FKL+FFF  NP
Sbjct: 115 ENKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLDFFFDTNP 174

Query: 62  YFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTR---------ECSTRKPK---- 108
           YF N VL K + MIDE + I ++AIG++I+WYP KCLT+              KP     
Sbjct: 175 YFSNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTE 234

Query: 109 --KSFFNFFKSLEFPFYDESIDVKLL----HQLEHDYKIGVTIKKEIVCHAISWFCGDAT 162
             +SFFNFFK  E P  D  ID  L     +Q+E DY IG T++ +I+ HA+SWF G+A 
Sbjct: 235 SCESFFNFFKPPEVPEDDADIDEDLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAA 294

Query: 163 CG 164
            G
Sbjct: 295 QG 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530381|ref|XP_003533760.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Glycine max]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 117/179 (65%), Gaps = 19/179 (10%)

Query: 2   QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNP 61
           +++EKGVP+FWL AMKNN +LA+EI++ DE ALK+L DIK SR+     FKLEFFF  NP
Sbjct: 117 EDKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLEFFFDTNP 176

Query: 62  YFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTR---------ECSTRKPK---- 108
           YF N +L K + MIDE + I ++AIG++I+WYP KCLT+              KP     
Sbjct: 177 YFSNTILTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTE 236

Query: 109 --KSFFNFFKSLEFPFYDESID----VKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDA 161
             +SFFNFFK  E P  D  ID     +L +Q+E DY IG TI+ +I+ HA+SWF G+A
Sbjct: 237 SCESFFNFFKPPEVPEDDVDIDEDLAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEA 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738653|emb|CBI27898.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 117/180 (65%), Gaps = 19/180 (10%)

Query: 4   EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYF 63
           EEKGVP+FWLTAMK N +LA+EI++ DE ALKY+ DIK  R+     FKLEFFF  NPYF
Sbjct: 141 EEKGVPDFWLTAMKTNEVLAEEISERDEGALKYIKDIKWCRIDNPKGFKLEFFFDTNPYF 200

Query: 64  KNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKK-------------- 109
           KN VL K + MIDE + I ++AIG++I+W+P KCLT++   +KP+K              
Sbjct: 201 KNSVLTKTYHMIDEDEPILEKAIGTEIEWFPGKCLTQKLLKKKPRKGSKNAKPITKTESC 260

Query: 110 -SFFNFFKSLEFP----FYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCG 164
            SFFNFF   + P      DE    +L +Q+E DY IG TI+ +I+ HA+SWF G+A  G
Sbjct: 261 ESFFNFFSPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAAQG 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444889|ref|XP_002281573.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 117/180 (65%), Gaps = 19/180 (10%)

Query: 4   EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYF 63
           EEKGVP+FWLTAMK N +LA+EI++ DE ALKY+ DIK  R+     FKLEFFF  NPYF
Sbjct: 123 EEKGVPDFWLTAMKTNEVLAEEISERDEGALKYIKDIKWCRIDNPKGFKLEFFFDTNPYF 182

Query: 64  KNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKK-------------- 109
           KN VL K + MIDE + I ++AIG++I+W+P KCLT++   +KP+K              
Sbjct: 183 KNSVLTKTYHMIDEDEPILEKAIGTEIEWFPGKCLTQKLLKKKPRKGSKNAKPITKTESC 242

Query: 110 -SFFNFFKSLEFP----FYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDATCG 164
            SFFNFF   + P      DE    +L +Q+E DY IG TI+ +I+ HA+SWF G+A  G
Sbjct: 243 ESFFNFFSPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAAQG 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530383|ref|XP_003533761.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 2 [Glycine max]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 117/179 (65%), Gaps = 19/179 (10%)

Query: 2   QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNP 61
           +++EKGVP+FWL AMKNN +LA+EI++ DE ALK+L DIK SR+     FKLEFFF  NP
Sbjct: 117 EDKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLEFFFDTNP 176

Query: 62  YFKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTR---------ECSTRKPK---- 108
           YF N +L K + MIDE + I ++AIG++I+WYP KCLT+              KP     
Sbjct: 177 YFSNTILTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTE 236

Query: 109 --KSFFNFFKSLEFPFYDESID----VKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDA 161
             +SFFNFFK  E P  D  ID     +L +Q+E DY IG TI+ +I+ HA+SWF G+A
Sbjct: 237 SCESFFNFFKPPEVPEDDVDIDEDLAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEA 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530387|ref|XP_003533763.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 4 [Glycine max]

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 114/176 (64%), Gaps = 19/176 (10%)

Query: 5   EKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFK 64
           EKGVP+FWL AMKNN +LA+EI++ DE ALK+L DIK SR+     FKLEFFF  NPYF 
Sbjct: 126 EKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLEFFFDTNPYFS 185

Query: 65  NYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTR---------ECSTRKPK------K 109
           N +L K + MIDE + I ++AIG++I+WYP KCLT+              KP       +
Sbjct: 186 NTILTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTESCE 245

Query: 110 SFFNFFKSLEFPFYDESID----VKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDA 161
           SFFNFFK  E P  D  ID     +L +Q+E DY IG TI+ +I+ HA+SWF G+A
Sbjct: 246 SFFNFFKPPEVPEDDVDIDEDLAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEA 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530389|ref|XP_003533764.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 5 [Glycine max]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 114/176 (64%), Gaps = 19/176 (10%)

Query: 5   EKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFK 64
           EKGVP+FWL AMKNN +LA+EI++ DE ALK+L DIK SR+     FKLEFFF  NPYF 
Sbjct: 126 EKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLEFFFDTNPYFS 185

Query: 65  NYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTR---------ECSTRKPK------K 109
           N +L K + MIDE + I ++AIG++I+WYP KCLT+              KP       +
Sbjct: 186 NTILTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTESCE 245

Query: 110 SFFNFFKSLEFPFYDESID----VKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDA 161
           SFFNFFK  E P  D  ID     +L +Q+E DY IG TI+ +I+ HA+SWF G+A
Sbjct: 246 SFFNFFKPPEVPEDDVDIDEDLAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEA 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2050424	379	NAP1;2 "AT2G19480" [Arabidopsi	0.427	0.258	0.612	5.7e-38
TAIR|locus:2164595	374	NAP1;3 "AT5G56950" [Arabidopsi	0.427	0.262	0.571	6.3e-35
TAIR|locus:2120785	372	NAP1;1 "AT4G26110" [Arabidopsi	0.427	0.263	0.571	1.3e-34
ASPGD|ASPL0000075565	409	AN8863 [Emericella nidulans (t	0.401	0.224	0.474	4.3e-22
POMBASE|SPCC364.06	393	nap1 "nucleosome assembly prot	0.445	0.259	0.411	3.1e-21
UNIPROTKB|G4MND6	404	MGG_06924 "Nucleosome assembly	0.419	0.237	0.421	3.8e-19
CGD|CAL0006351	435	orf19.7501 [Candida albicans (	0.393	0.206	0.389	7.5e-19
POMBASE|SPBC2D10.11c	379	nap2 "nucleosome assembly prot	0.445	0.269	0.388	1.8e-16
WB|WBGene00017075	316	nap-1 [Caenorhabditis elegans	0.419	0.303	0.380	2.7e-16
SGD|S000001756	417	NAP1 "Protein that interacts w	0.397	0.218	0.387	3.1e-16

TAIR|locus:2050424 NAP1;2 "AT2G19480" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query:     4 EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYF 63
             EEKGVP+FWL A+KNN + A+EIT+ DE ALKYL DIK SR+     FKLEFFF  NPYF
Sbjct:   122 EEKGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNPYF 181

Query:    64 KNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRE 101
             KN VL K + MIDE + I ++A+G++I+WYP KCLT++
Sbjct:   182 KNTVLTKTYHMIDEDEPILEKALGTEIEWYPGKCLTQK 219

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2164595 NAP1;3 "AT5G56950" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 56/98 (57%), Positives = 75/98 (76%)

Query:     4 EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYF 63
             EEKGVP+FWLTA+KNN ++++EIT+ DE AL YL DIK  ++     FKLEFFF  NPYF
Sbjct:   122 EEKGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPYF 181

Query:    64 KNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRE 101
             KN +L K + MIDE + + ++AIG++I WYP KCLT++
Sbjct:   182 KNTLLTKAYHMIDEDEPLLEKAIGTEIDWYPGKCLTQK 219

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2120785 NAP1;1 "AT4G26110" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 56/98 (57%), Positives = 76/98 (77%)

Query:     4 EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYF 63
             EEKGVP+FWLTA+KNN ++++E+T+ DE ALKYL DIK  ++     FKLEFFF  NPYF
Sbjct:   123 EEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNPYF 182

Query:    64 KNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRE 101
             KN VL K + MIDE + + ++A+G++I WYP KCLT++
Sbjct:   183 KNTVLTKSYHMIDEDEPLLEKAMGTEIDWYPGKCLTQK 220

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

ASPGD|ASPL0000075565 AN8863 [Emericella nidulans (taxid:162425)]

 Score = 200 (75.5 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
 Identities = 46/97 (47%), Positives = 59/97 (60%)

Query:     7 GVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKNY 66
             G+P FWL+AMKN   LA+ IT  DEEALK+LIDI+   L   P F+L F F  N +F N 
Sbjct:   174 GIPEFWLSAMKNQISLAEMITDKDEEALKHLIDIRMEYLDR-PGFRLIFEFSENEFFTNK 232

Query:    67 VLAKKFIMIDEV----KLIFDEAIGSKIKWYPEKCLT 99
              ++K +   +E       I+D A G+KI W PEK LT
Sbjct:   233 TISKTYFYKEENGYGGDFIYDHAEGTKIDWKPEKDLT 269

GO:0007089 "traversing start control point of mitotic cell cycle" evidence=IEA

GO:0006336 "DNA replication-independent nucleosome assembly" evidence=IEA

GO:0097308 "cellular response to farnesol" evidence=IEP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPCC364.06 nap1 "nucleosome assembly protein Nap1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 198 (74.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
 Identities = 44/107 (41%), Positives = 62/107 (57%)

Query:     3 NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPY 62
             ++ KG+P FWLTAMKN   L++ IT  DE AL +L+DI+ S +   P FKLEF F  NP+
Sbjct:   159 DDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEK-PGFKLEFEFAENPF 217

Query:    63 FKNYVLAKKFIMIDEVK----LIFDEAIGSKIKWYPEKCLTRECSTR 105
             F N +L K +  ++E       ++D A G K+ W     LT    T+
Sbjct:   218 FTNKILTKTYYYMEESGPSNVFLYDHAEGDKVDWKENADLTVRTVTK 264

GO:0000790 "nuclear chromatin" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006334 "nucleosome assembly" evidence=ISO

GO:0006336 "DNA replication-independent nucleosome assembly" evidence=IDA

GO:0006337 "nucleosome disassembly" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS

GO:0006606 "protein import into nucleus" evidence=ISO

GO:0007089 "traversing start control point of mitotic cell cycle" evidence=IGI;IMP

GO:0042393 "histone binding" evidence=ISO

UNIPROTKB|G4MND6 MGG_06924 "Nucleosome assembly protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 179 (68.1 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
 Identities = 43/102 (42%), Positives = 60/102 (58%)

Query:     3 NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPY 62
             ++ KG+P FWL+AMKN   LA+ IT  DE+ALK+L DI+   L   P F+L F F  N +
Sbjct:   171 SDVKGIPEFWLSAMKNQISLAEMITDRDEQALKHLTDIRMEYLDK-PGFRLIFEFSENEF 229

Query:    63 FKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWY-PEKCLT 99
             F N  ++K +   +E       I+D A G KI+W   +K LT
Sbjct:   230 FSNKTISKTYYYQNESGYGGDFIYDHAEGDKIEWKGDDKDLT 271

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0006351 orf19.7501 [Candida albicans (taxid:5476)]

 Score = 173 (66.0 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
 Identities = 37/95 (38%), Positives = 56/95 (58%)

Query:     2 QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNP 61
             + +E+G+P FWLTA++N S +++ IT  D E L  LIDI+   L   P F+L F F PN 
Sbjct:   181 EEDEQGIPGFWLTALENLSTVSETITDRDSEVLSNLIDIRMEYL-STPGFQLIFEFKPND 239

Query:    62 YFKNYVLAKKFIMIDEV----KLIFDEAIGSKIKW 92
             +F+N  L K +    E+      ++D A G +I+W
Sbjct:   240 FFENQTLTKTYHYQAELGYSGDFVYDHADGCEIRW 274

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000788 "nuclear nucleosome" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0030332 "cyclin binding" evidence=IEA

GO:0007089 "traversing start control point of mitotic cell cycle" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006336 "DNA replication-independent nucleosome assembly" evidence=IEA

GO:0007117 "budding cell bud growth" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=IEA

POMBASE|SPBC2D10.11c nap2 "nucleosome assembly protein Nap2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 178 (67.7 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 42/108 (38%), Positives = 59/108 (54%)

Query:     4 EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE-FKLEFFFGPNPY 62
             + KG+P FWLT + N  L+ + IT  DE  L+ L DI+ + L      +KLEF F  N Y
Sbjct:   162 DPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDY 221

Query:    63 FKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWY-PEKCLTRECSTR 105
             F N +L K +   D++    + ++D A G KI W  PEK LT    T+
Sbjct:   222 FTNKILTKTYYYKDDLSPSGEFLYDHAEGDKINWIKPEKNLTVRVETK 269

GO:0000790 "nuclear chromatin" evidence=IC

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006334 "nucleosome assembly" evidence=ISM

GO:0042393 "histone binding" evidence=ISM

WB|WBGene00017075 nap-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 174 (66.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
 Identities = 40/105 (38%), Positives = 60/105 (57%)

Query:     6 KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPEFKLEFFFGPNPYFKN 65
             KG+ +FWLTA++ + L+A+ I + D   L YL D+ ++       FK+EF F  NPYFKN
Sbjct:   111 KGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNPYFKN 170

Query:    66 YVLAKKFIM-ID---EVKLIFD-----EAIGSKIKWYPEKCLTRE 101
              VL K +++  D   E  L FD      A+G  I+W   K +T++
Sbjct:   171 QVLTKTYLLGFDPDAEAPLQFDGPHVIRAVGDTIEWEDGKNVTKK 215

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

SGD|S000001756 NAP1 "Protein that interacts with mitotic cyclin Clb2p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 156 (60.0 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
 Identities = 38/98 (38%), Positives = 53/98 (54%)

Query:     2 QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC-PEFKLEFFF--G 58
             + + KG+P+FWLTA++N  ++   IT  D E L+YL DI    L    P FKL F F   
Sbjct:   179 EEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSS 238

Query:    59 PNPYFKNYVLAKKFIMIDEV----KLIFDEAIGSKIKW 92
              NP+F N +L K +    E+      I+D A G +I W
Sbjct:   239 ANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISW 276

GO:0042393 "histone binding" evidence=IDA

GO:0006337 "nucleosome disassembly" evidence=IDA

GO:0007117 "budding cell bud growth" evidence=IGI;IMP

GO:0006334 "nucleosome assembly" evidence=IEA;ISS;IDA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0000788 "nuclear nucleosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0030332 "cyclin binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam00956	236	pfam00956, NAP, Nucleosome assembly protein (NAP)	1e-47
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	1e-28

>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP)

 Score =  156 bits (397), Expect = 1e-47
 Identities = 72/175 (41%), Positives = 100/175 (57%), Gaps = 17/175 (9%)

Query: 4   EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLV-CCPEFKLEFFFGPNPY 62
           EEKG+P FWLTA+KN+ LL++ IT+ DEEALKYL DI+   L      FKL F F PNPY
Sbjct: 62  EEKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLIFHFAPNPY 121

Query: 63  FKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRK---------------- 106
           F N VL K + + DE      ++ G+ I+W   K LT +   +K                
Sbjct: 122 FTNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQTRTITKTV 181

Query: 107 PKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDA 161
           P +SFFNFF   + P  D+  D +L  +LE DY+IG  IK +++  A+ ++ G+A
Sbjct: 182 PAESFFNFFSPPKVPDDDDDDDEELEEELELDYEIGEIIKDDLIPRALDYYTGEA 236

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score =  109 bits (275), Expect = 1e-28
 Identities = 66/184 (35%), Positives = 93/184 (50%), Gaps = 31/184 (16%)

Query: 7   GVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE--FKLEFFFGPNPYFK 64
           G+P FWLTAMKNN+ L   I + DE  L YL DI         +  F L F F PNP+F 
Sbjct: 98  GLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFS 157

Query: 65  NYVLAKKFIMI-----DEVKLIFDEAIGSKIKWYPEKCLTRECSTRKP------------ 107
           N VL K + M      DE  L    A  ++I W   K +T++  T+K             
Sbjct: 158 NTVLTKTYHMKVLDGDDEPLLSNTVA--TEIDWKQGKDVTKKVVTKKQRHKKTKETRTVT 215

Query: 108 ----KKSFFNFFKSLEFPFYD--ESIDVKLLHQL----EHDYKIGVTIKKEIVCHAISWF 157
               ++SFFNFF S E P  +  E +    + +L    E DY+IG+TI+ +++ +A+ WF
Sbjct: 216 ETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRDKLIPYAVYWF 275

Query: 158 CGDA 161
            G+A
Sbjct: 276 LGEA 279

Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG1507	358	consensus Nucleosome assembly protein NAP-1 [Chrom	100.0
PTZ00007	337	(NAP-L) nucleosome assembly protein -L; Provisiona	100.0
PF00956	244	NAP: Nucleosome assembly protein (NAP); InterPro:	100.0
PTZ00008	185	(NAP-S) nucleosome assembly protein-S; Provisional	100.0
KOG1508	260	consensus DNA replication factor/protein phosphata	99.9
KOG1507	358	consensus Nucleosome assembly protein NAP-1 [Chrom	99.55
PTZ00007	337	(NAP-L) nucleosome assembly protein -L; Provisiona	99.16
PF11629	49	Mst1_SARAH: C terminal SARAH domain of Mst1; Inter	88.88
KOG1508	260	consensus DNA replication factor/protein phosphata	84.44

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.7e-53  Score=378.85  Aligned_cols=164  Identities=42%  Similarity=0.703  Sum_probs=146.4

Q ss_pred             ccCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccCC-CceEEEEEeCCCCcccCceEEEEEEEe---cCCc
Q 027051            4 EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC-PEFKLEFFFGPNPYFKNYVLAKKFIMI---DEVK   79 (229)
Q Consensus         4 ~i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d~-~~f~l~F~F~~NpYF~N~vLtK~y~~~---~~~~   79 (229)
                      ..+|||+||+|||+|+++++.||+++|++||+||+||++.+..++ +||+|+|||.+||||+|++|||+|+|+   +..+
T Consensus       156 d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~~  235 (358)
T KOG1507|consen  156 DPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDEDD  235 (358)
T ss_pred             cccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCcC
Confidence            569999999999999999999999999999999999999999887 599999999999999999999999998   4444


Q ss_pred             e------eeeceeeceeeeecCCCcccccccCCCCc----------------ccccccccCCCCCCCccccHHH-HHhhh
Q 027051           80 L------IFDEAIGSKIKWYPEKCLTRECSTRKPKK----------------SFFNFFKSLEFPFYDESIDVKL-LHQLE  136 (229)
Q Consensus        80 ~------~~~~~~~t~I~Wk~gkdlt~~~~~kk~~~----------------SFF~fF~~~~~p~~~~~~dee~-~~~l~  136 (229)
                      |      .+..|+||.|+|++|||||+++++|||++                ||||||+|+..|+ +++.|++. +.+|+
T Consensus       236 P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd-~~d~Ded~~~~~L~  314 (358)
T KOG1507|consen  236 PFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPD-EEDLDEDDLEELLE  314 (358)
T ss_pred             CcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCc-ccccCchHHHHHHH
Confidence            5      68899999999999999999998887642                9999999999993 33344444 89999


Q ss_pred             hhhHHHHHhhhccccchhhhhccccCCccccc
Q 027051          137 HDYKIGVTIKKEIVCHAISWFCGDATCGRRTK  168 (229)
Q Consensus       137 ~D~eig~~i~d~IiP~al~yy~g~~~~~~d~~  168 (229)
                      .||+||+.||+.|||+||.||||++.+++++.
T Consensus       315 ~DyeIG~~lr~~IIPrAV~~fTGea~e~~~~~  346 (358)
T KOG1507|consen  315 LDYEIGETLRDKIIPRAVLWFTGEALEDEDDF  346 (358)
T ss_pred             hhHHHHHHHHhhhhhheeeeeccccccccccc
Confidence            99999999999999999999999997655433

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional

Probab=100.00  E-value=1.1e-49  Score=362.68  Aligned_cols=162  Identities=38%  Similarity=0.647  Sum_probs=141.9

Q ss_pred             cCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccCC--CceEEEEEeCCCCcccCceEEEEEEEec---CCc
Q 027051            5 EKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC--PEFKLEFFFGPNPYFKNYVLAKKFIMID---EVK   79 (229)
Q Consensus         5 i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d~--~~f~l~F~F~~NpYF~N~vLtK~y~~~~---~~~   79 (229)
                      .+|||+||++||+||+.++.+|+++|++||+||+||+|++..+.  +||+|+|+|++||||+|++|||+|++..   .+.
T Consensus        96 ~~gIP~FWl~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~  175 (337)
T PTZ00007         96 TPGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDE  175 (337)
T ss_pred             cCCcccHHHHHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCC
Confidence            34899999999999999999999999999999999999988653  6999999999999999999999999964   235


Q ss_pred             eeeeceeeceeeeecCCCcccccccCCCC----------------cccccccccCCCCCCCc------cccHHHHHhhhh
Q 027051           80 LIFDEAIGSKIKWYPEKCLTRECSTRKPK----------------KSFFNFFKSLEFPFYDE------SIDVKLLHQLEH  137 (229)
Q Consensus        80 ~~~~~~~~t~I~Wk~gkdlt~~~~~kk~~----------------~SFF~fF~~~~~p~~~~------~~dee~~~~l~~  137 (229)
                      |++.+++||+|+||+|||||+++++||++                .||||||+++..|+.++      +..++++++|+.
T Consensus       176 p~~~~~~~t~I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~  255 (337)
T PTZ00007        176 PLLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVET  255 (337)
T ss_pred             ceeecceeeeceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHH
Confidence            66678999999999999999988766543                39999999998886542      122358899999


Q ss_pred             hhHHHHHhhhccccchhhhhccccCCccc
Q 027051          138 DYKIGVTIKKEIVCHAISWFCGDATCGRR  166 (229)
Q Consensus       138 D~eig~~i~d~IiP~al~yy~g~~~~~~d  166 (229)
                      ||+||++|+++|||+||.||||++.++++
T Consensus       256 DyeiG~~ikd~IIP~AV~yftGea~d~~~  284 (337)
T PTZ00007        256 DYEIGITIRDKLIPYAVYWFLGEAIDEDS  284 (337)
T ss_pred             hHHHHHHHHHhcccccHHhhCCCcccccc
Confidence            99999999999999999999999988554

>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus

Probab=100.00  E-value=1.4e-45  Score=323.47  Aligned_cols=156  Identities=40%  Similarity=0.689  Sum_probs=131.0

Q ss_pred             cCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccC-CCceEEEEEeCCCCcccCceEEEEEEEecCCc---e
Q 027051            5 EKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVC-CPEFKLEFFFGPNPYFKNYVLAKKFIMIDEVK---L   80 (229)
Q Consensus         5 i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d-~~~f~l~F~F~~NpYF~N~vLtK~y~~~~~~~---~   80 (229)
                      .+|||+||++||+||++++.+|++.|.++|+||+||+|+...+ +++|+|+|+|++||||+|++|+|+|++..+++   |
T Consensus        66 ~~gIP~FW~~vl~n~~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~~~~~  145 (244)
T PF00956_consen   66 PKGIPGFWLTVLKNHPLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGDEEDP  145 (244)
T ss_dssp             STTSTTHHHHHHHTSHHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSSTTTT
T ss_pred             ccCCCCccccccccCchhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCCCCCC
Confidence            5679999999999999999999999999999999999999977 56999999999999999999999999987654   1


Q ss_pred             -eeeceeeceeeeecCCCcccccccCCCC----------------cccccccccCCCCCCCc--cccHHHHHhhhhhhHH
Q 027051           81 -IFDEAIGSKIKWYPEKCLTRECSTRKPK----------------KSFFNFFKSLEFPFYDE--SIDVKLLHQLEHDYKI  141 (229)
Q Consensus        81 -~~~~~~~t~I~Wk~gkdlt~~~~~kk~~----------------~SFF~fF~~~~~p~~~~--~~dee~~~~l~~D~ei  141 (229)
                       . .++++|+|+||+|+|+|++.++++++                .|||+||+++..|++++  +.+++.++.+..|++|
T Consensus       146 ~~-~~~~~t~I~Wk~gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei  224 (244)
T PF00956_consen  146 DE-LKSESTPIDWKPGKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEI  224 (244)
T ss_dssp             -E-EEEEE---EBSTTTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHH
T ss_pred             Cc-ceeeeecccccCCCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHH
Confidence             2 48999999999999999987765432                39999999987775433  2445567889999999


Q ss_pred             HHHhhhccccchhhhhcccc
Q 027051          142 GVTIKKEIVCHAISWFCGDA  161 (229)
Q Consensus       142 g~~i~d~IiP~al~yy~g~~  161 (229)
                      |.+|+++|||+||.||||+|
T Consensus       225 ~~~i~d~i~P~av~yy~gea  244 (244)
T PF00956_consen  225 GEIIKDDIIPNAVKYYTGEA  244 (244)
T ss_dssp             HHHHHHTCCCHHHHHHHTCT
T ss_pred             HHHHHhheechHHHHhCCCC
Confidence            99999999999999999986

The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....

>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional

Probab=100.00  E-value=9.1e-46  Score=313.31  Aligned_cols=145  Identities=19%  Similarity=0.346  Sum_probs=126.3

Q ss_pred             ccccCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEc-cCCCceEEEEEeCC--CCcccCceEEEEEEEecCC
Q 027051            2 QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRL-VCCPEFKLEFFFGP--NPYFKNYVLAKKFIMIDEV   78 (229)
Q Consensus         2 ~e~i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~-~d~~~f~l~F~F~~--NpYF~N~vLtK~y~~~~~~   78 (229)
                      .++|+|||+||++||+||+.++ +|+++|+++|+||+||+|+.. .+++||+|+|+|.+  ||||+|++|||+|++.+++
T Consensus        30 ~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~i~F~F~~~~N~yF~n~~LtK~y~~~~~~  108 (185)
T PTZ00008         30 QEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKNNQ  108 (185)
T ss_pred             HHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEEEEEEECCCCCCCcCCCEEEEEEEEecCC
Confidence            3678999999999999999999 999999999999999999974 45569999999965  8999999999999998765


Q ss_pred             ceeeeceeeceeeeecCCCcccccccCCC-------CcccccccccCCCCCCCccccHHHHHhhhhhhHHHHHhhhcccc
Q 027051           79 KLIFDEAIGSKIKWYPEKCLTRECSTRKP-------KKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVC  151 (229)
Q Consensus        79 ~~~~~~~~~t~I~Wk~gkdlt~~~~~kk~-------~~SFF~fF~~~~~p~~~~~~dee~~~~l~~D~eig~~i~d~IiP  151 (229)
                      +.   .+++|+|+||+|+|+|+++.+++.       ..||||||+++..+               .|++||++|+++|||
T Consensus       109 ~~---~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~---------------~~~eIg~~i~e~i~P  170 (185)
T PTZ00008        109 EK---VVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ---------------DRPDVGEIIRREIWH  170 (185)
T ss_pred             Cc---eeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc---------------CcHHHHHHHHHhhcc
Confidence            43   578999999999999998766432       24999999986433               356999999999999


Q ss_pred             chhhhhccccCCcc
Q 027051          152 HAISWFCGDATCGR  165 (229)
Q Consensus       152 ~al~yy~g~~~~~~  165 (229)
                      +||.||+|++.+++
T Consensus       171 ~av~yy~ge~~~~~  184 (185)
T PTZ00008        171 APLLYYLDTVSIDD  184 (185)
T ss_pred             chHHhhCCcccccc
Confidence            99999999988765

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=99.90  E-value=7.4e-25  Score=194.45  Aligned_cols=144  Identities=30%  Similarity=0.479  Sum_probs=125.8

Q ss_pred             ccccCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccCCC-ceEEEEEeCCCCcccCceEEEEEEEecCCce
Q 027051            2 QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCP-EFKLEFFFGPNPYFKNYVLAKKFIMIDEVKL   80 (229)
Q Consensus         2 ~e~i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d~~-~f~l~F~F~~NpYF~N~vLtK~y~~~~~~~~   80 (229)
                      ..+++.||+||.+++.|||.++.+|.+.|.+++.||..+.|+.+.+.. ||++.|+|.+|+||+|.+++|+|++...+++
T Consensus        74 ~~ii~~i~~fw~~~~~~hp~~~~~i~~~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~~~  153 (260)
T KOG1508|consen   74 RELIKEIPNFWVTAFLNHPTLSEWIPEEDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESGKP  153 (260)
T ss_pred             hHHHhhcccceeEEEecCCcHhhhhhhhhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeecccCc
Confidence            457899999999999999999999999999999999999999998765 9999999999999999999999999988876


Q ss_pred             eeeceeeceeeeecCCCcccccc----cCCC---CcccccccccCCCCCCCccccHHHHHhhhhhhHHHHHhhhccccch
Q 027051           81 IFDEAIGSKIKWYPEKCLTRECS----TRKP---KKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHA  153 (229)
Q Consensus        81 ~~~~~~~t~I~Wk~gkdlt~~~~----~kk~---~~SFF~fF~~~~~p~~~~~~dee~~~~l~~D~eig~~i~d~IiP~a  153 (229)
                         ++.+|+|.|+.|+++.....    +++.   ..|||.||+.+..++.+               +|+++|++.+||++
T Consensus       154 ---~s~~t~i~w~~~~~~~~~~~~~~~~~k~~~~~~s~f~wf~~~~~~~~d---------------~i~ei~~~~~~~~~  215 (260)
T KOG1508|consen  154 ---SSESTPISWKEGKPLPNPVKRGELKNKNGDGPKSFFEWFSDTSLKEFD---------------EILEIIKDELWPNP  215 (260)
T ss_pred             ---ccccccccccCCCCCcccccccccccccCcccccHHHHHHhccCCCcc---------------chhhhhhcccccch
Confidence               58999999999998765433    2221   24999999999877632               69999999999999


Q ss_pred             hhhhccccCC
Q 027051          154 ISWFCGDATC  163 (229)
Q Consensus       154 l~yy~g~~~~  163 (229)
                      ++||+-...+
T Consensus       216 ~~~~~~~~~~  225 (260)
T KOG1508|consen  216 LQYYLEPDGE  225 (260)
T ss_pred             hhhhcccccc
Confidence            9999865544

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=3.5e-15  Score=135.54  Aligned_cols=57  Identities=25%  Similarity=0.363  Sum_probs=55.0

Q ss_pred             ccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcccc
Q 027051          170 KIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSY  226 (229)
Q Consensus       170 ~~~~~~~l~~~v~~~~~~l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~~r~~  226 (229)
                      .++++.+||+.|++||.|||+||.+|++||++|++|+.+||+||++||||||.||..
T Consensus        64 ~s~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~e  120 (358)
T KOG1507|consen   64 LSDMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRRE  120 (358)
T ss_pred             CchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            378999999999999999999999999999999999999999999999999999974

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional

Probab=99.16  E-value=2.7e-11  Score=111.24  Aligned_cols=59  Identities=22%  Similarity=0.287  Sum_probs=56.0

Q ss_pred             ccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcccccC
Q 027051          170 KIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSYHL  228 (229)
Q Consensus       170 ~~~~~~~l~~~v~~~~~~l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~~r~~~~  228 (229)
                      ++++..+||+.|++||.+|+.||.++++|+++|.+|+.+||+||+++|+|||.||.-.+
T Consensus        28 ~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII   86 (337)
T PTZ00007         28 DDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEAL   86 (337)
T ss_pred             ccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999998643

>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name

Probab=88.88  E-value=1.1  Score=30.28  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 027051          188 LRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDT  222 (229)
Q Consensus       188 l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~  222 (229)
                      +.+||....-|...+..|+.+|.+.|+.+=||+..
T Consensus        10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIld   44 (49)
T PF11629_consen   10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILD   44 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHH
Confidence            46788888899999999999999999999999864

In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=84.44  E-value=1.9  Score=38.63  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcccc
Q 027051          173 YDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSY  226 (229)
Q Consensus       173 ~~~~l~~~v~~~~~~l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~~r~~  226 (229)
                      -...-++.+....+.|..+|.+++-+.++.-++...|+.||..+-.|.|.+|..
T Consensus        22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~   75 (260)
T KOG1508|consen   22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRE   75 (260)
T ss_pred             ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhH
Confidence            344566788889999999999999999999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
3hfd_A	276	Nucleosome Assembly Protein 1 From Plasmodium Knowl		3e-12
3fs3_A	359	Crystal Structure Of Malaria Parasite Nucleosome As		3e-11
3gyv_A	249	Crystal Structure Of Nucleosome Assembly Protein Fr		3e-11
2z2r_A	292	Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng		1e-10
2ayu_A	417	The Structure Of Nucleosome Assembly Protein Sugges		2e-10
2e50_A	225	Crystal Structure Of SetTAF-1betaINHAT Length = 225		2e-09

>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 7   GVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE----FKLEFFFGPNPY 62
            +P FWL A++NN+ ++  I   DEE L YL DI+   +    E    F L F F PNP+
Sbjct: 76  NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPF 135
Query: 63  FKNYVLAKKFIM-----IDEVKLIFDEAIGSKIKWYPEKCL-------------TRECST 104
           F N VL K + M      +E  L+  EA  + I WY  K +             +RE  T
Sbjct: 136 FSNSVLTKTYHMKCVDCDNEPVLLHTEA--TVIDWYDNKNILKKNVVKKQHNKNSREVKT 193
Query: 105 RXXXXXXXXXXXXXXXXXYDESIDVKLLHQ---------LEHDYKIGVTIKKEIVCHAIS 155
                                S  +K L +         +E DY++ +TIK+ I+ +A+ 
Sbjct: 194 VQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVD 253
Query: 156 WFCG 159
           +F G
Sbjct: 254 YFLG 257

>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 7   GVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE----FKLEFFFGPNPY 62
            +P FWL A++NN+ ++  I   DEE L YL DI+   +    E    F L F+F  NP+
Sbjct: 110 NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPF 169
Query: 63  FKNYVLAKKFIM-----IDEVKLIFDEAIGSKIKWYPEKCL-------------TRECST 104
           F N VL K + M      +E  L+  EA  + I WY  K +             +RE  T
Sbjct: 170 FSNSVLTKTYHMKCVDCDNEPVLLHTEA--TVIDWYDNKNILKKNVVKKQHNKNSREVKT 227
Query: 105 RXXXXXXXXXXXXXXXXXYDESIDVKLLHQ---------LEHDYKIGVTIKKEIVCHAIS 155
                                S  +K L +         +E DY++ +TIK+ I+ +A+ 
Sbjct: 228 VQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVD 287
Query: 156 WFCG 159
           ++ G
Sbjct: 288 YYLG 291

>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 33/184 (17%)
Query: 7   GVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE----FKLEFFFGPNPY 62
            +P FWL A++NN+ ++  I   DEE L YL DI+   +    E    F L F+F  NP+
Sbjct: 66  NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPF 125
Query: 63  FKNYVLAKKFIM-----IDEVKLIFDEAIGSKIKWYPEKCL-------------TRECST 104
           F N VL K + M      +E  L+  EA  + I WY  K +             +RE  T
Sbjct: 126 FSNSVLTKTYHMKCVDCDNEPVLLHTEA--TVIDWYDNKNILKKNVVKKQHNKNSREVKT 183
Query: 105 RXXXXXXXXXXXXXXXXXYDESIDVKLLHQ---------LEHDYKIGVTIKKEIVCHAIS 155
                                S  +K L +         +E DY++ +TIK+ I+ +A+ 
Sbjct: 184 VQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVD 243
Query: 156 WFCG 159
           ++ G
Sbjct: 244 YYLG 247

>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 26/182 (14%)
Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC-PEFKLEFFF--GPNPY 62
           KG+P+FWLTA++N  ++   IT  D E L+YL DI    L    P FKL F F    NP+
Sbjct: 110 KGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPF 169
Query: 63  FKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWYP---------EKCLTRECSTRXXXX 109
           F N +L K +    E+      I+D A G +I W           E    R  +T+    
Sbjct: 170 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRT 229
Query: 110 XXXXXXXXXXXXXYD----------ESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCG 159
                        +D          E ++  L  +L  DY IG  +K +++  A+ WF G
Sbjct: 230 IEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTG 289
Query: 160 DA 161
            A
Sbjct: 290 AA 291

>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC-PEFKLEFFF--GPNPY 62
           KG+P+FWLTA++N  ++   IT  D E L+YL DI    L    P FKL F F    NP+
Sbjct: 183 KGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPF 242
Query: 63  FKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWYP---------EKCLTRECSTRXXXX 109
           F N +L K +    E+      I+D A G +I W           E    R  +T+    
Sbjct: 243 FTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRT 302
Query: 110 XXXXXXXXXXXXXYDES----------IDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCG 159
                        +D            ++  L  +L  DY IG  +K +++  A+ WF G
Sbjct: 303 IEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTG 362

>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 8   VPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE-FKLEFFFGPNPYFKNY 66
           +PNFW+T   N+  ++  + + DEEA+ YL  ++ +        ++++F+F  NPYF+N 
Sbjct: 78  IPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137
Query: 67  VLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECS 103
           VL+K+F M +        +  ++IKW   K +T+  S
Sbjct: 138 VLSKEFHMNESGDP---SSKSTEIKWKSGKDMTKRSS 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	6e-28
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	1e-27
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	6e-27
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	3e-26
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	3e-20

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score =  108 bits (270), Expect = 6e-28
 Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 26/184 (14%)

Query: 4   EEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRL-VCCPEFKLEFF--FGPN 60
           + KG+P+FWLTA++N  ++   IT  D E L+YL DI    L    P FKL F      N
Sbjct: 181 QVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSAN 240

Query: 61  PYFKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWYPEKCLT----------------- 99
           P+F N +L K +    E+      I+D A G +I W                        
Sbjct: 241 PFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQV 300

Query: 100 RECSTRKPKKSFFNFFKSLEFPFYDESIDVKLLHQ--LEHDYKIGVTIKKEIVCHAISWF 157
           R      P +SFFNFF   +    D+  +++   +  L  DY IG  +K +++  A+ WF
Sbjct: 301 RTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWF 360

Query: 158 CGDA 161
            G A
Sbjct: 361 TGAA 364

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score =  106 bits (266), Expect = 1e-27
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 29/189 (15%)

Query: 2   QNEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE----FKLEFFF 57
           +     +P FWL A++NN+ ++  I   DEE L YL DI+   +    E    F L F+F
Sbjct: 105 KIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYF 164

Query: 58  GPNPYFKNYVLAKKFIMIDEVKL---IFDEAIGSKIKWYPEKCLTRECSTRK-------- 106
             NP+F N VL K + M         +      + I WY  K + ++   +K        
Sbjct: 165 ATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSRE 224

Query: 107 --------PKKSFFNFFKSLEFPFYDESIDV------KLLHQLEHDYKIGVTIKKEIVCH 152
                    + SFF+FF S + P  +    +      +L   +E DY++ +TIK+ I+ +
Sbjct: 225 VKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPY 284

Query: 153 AISWFCGDA 161
           A+ ++ G  
Sbjct: 285 AVDYYLGII 293

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score =  103 bits (257), Expect = 6e-27
 Identities = 28/178 (15%), Positives = 50/178 (28%), Gaps = 31/178 (17%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE------FKLEFFF-G 58
             +  FW   +  +   A  I  +D + +  +  IK   L    E      F + F F G
Sbjct: 52  DEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHG 111

Query: 59  PNPYFKNYVLAKKFIMIDEVKLIFDEAIGS---KIKWYPEKCLTRECSTRK--------- 106
               FK   + K F +        D  + S    I+W            +          
Sbjct: 112 IEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKK 171

Query: 107 ---PKKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDA 161
                K+ F +F             +K   +  H   +     +EI    + ++    
Sbjct: 172 YRQGMKTIFGWF---------RWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQ 220

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225

 Score =  100 bits (250), Expect = 3e-26
 Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 29/163 (17%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE-FKLEFFFGPNPYFK 64
             +PNFW+T   N+  ++  + + DEEA+ YL  ++ +        ++++F+F  NPYF+
Sbjct: 76  AKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFE 135

Query: 65  NYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPKK----------SFFNF 114
           N VL+K+F M +        +  ++IKW   K +T+  S  + K           SFF +
Sbjct: 136 NKVLSKEFHMNESGD---PSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTW 192

Query: 115 FKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWF 157
           F        DE               +G  IK +I  + + ++
Sbjct: 193 FTDHSDAGADE---------------LGEVIKDDIWPNPLQYY 220

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193

 Score = 84.0 bits (207), Expect = 3e-20
 Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 29/166 (17%)

Query: 6   KGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLV---CCPEFKLEFFFGPNPY 62
           + +P FW   ++ +  L+  + + D + L +L+ +     +      +    F      +
Sbjct: 46  QKIPGFWANTLRKHPALSDIVPE-DIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEF 104

Query: 63  FKNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRK-------PKKSFFNFF 115
            +   L K     +  + +      ++IKW   K      +  +       PK S F +F
Sbjct: 105 MEPLTLVKHVTFDNNQEKV---VECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWF 161

Query: 116 KSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWFCGDA 161
            + E     +               +G  I++EI  + +S++ G  
Sbjct: 162 TTDELQDKPD---------------VGELIRREIWHNPLSYYLGLE 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	100.0
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	100.0
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	100.0
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	100.0
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	100.0
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	99.3
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	99.28
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	99.09
2jo8_A	51	Serine/threonine-protein kinase 4; C-terminal doma	80.15

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A

Probab=100.00  E-value=4.6e-50  Score=373.54  Aligned_cols=159  Identities=38%  Similarity=0.685  Sum_probs=142.5

Q ss_pred             cCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccC-CCceEEEEEe--CCCCcccCceEEEEEEEecC----
Q 027051            5 EKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVC-CPEFKLEFFF--GPNPYFKNYVLAKKFIMIDE----   77 (229)
Q Consensus         5 i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d-~~~f~l~F~F--~~NpYF~N~vLtK~y~~~~~----   77 (229)
                      ++|||+||+|||+||++|+.||+++|++||+||+||+|++..+ ++||+|+|+|  .+||||+|++|||+|++..+    
T Consensus       182 ~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~~  261 (417)
T 2ayu_A          182 VKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYS  261 (417)
T ss_dssp             CSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSS
T ss_pred             ccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCCC
Confidence            5899999999999999999999999999999999999999876 5699999999  99999999999999999753    


Q ss_pred             Cceeeeceeeceeeeec-CCCcccccccCCCC----------------cccccccccCCCCCCC--ccccHHHHHhhhhh
Q 027051           78 VKLIFDEAIGSKIKWYP-EKCLTRECSTRKPK----------------KSFFNFFKSLEFPFYD--ESIDVKLLHQLEHD  138 (229)
Q Consensus        78 ~~~~~~~~~~t~I~Wk~-gkdlt~~~~~kk~~----------------~SFF~fF~~~~~p~~~--~~~dee~~~~l~~D  138 (229)
                      |..++.+++||+|+||+ |||||+++++||++                .||||||+++..|+++  ++.+++++++|+.|
T Consensus       262 g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~~p~~dede~~~ee~e~~l~~D  341 (417)
T 2ayu_A          262 GDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALD  341 (417)
T ss_dssp             SSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCSCCCTTSSSTTHHHHHHHHHH
T ss_pred             CCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCCCCCccccccchHHHHHHHHHH
Confidence            44555679999999999 99999998876653                2999999999988765  23456799999999


Q ss_pred             hHHHHHhhhccccchhhhhccccCC
Q 027051          139 YKIGVTIKKEIVCHAISWFCGDATC  163 (229)
Q Consensus       139 ~eig~~i~d~IiP~al~yy~g~~~~  163 (229)
                      |+||++|+++|||+||.||||++.+
T Consensus       342 feIG~~Ikd~IiP~AV~yftGea~~  366 (417)
T 2ayu_A          342 YSIGEQLKDKLIPRAVDWFTGAALE  366 (417)
T ss_dssp             HHHHHHHHHTTTTTHHHHHHSHHHH
T ss_pred             HHHHHHHHhhccccHHHHhcccccc
Confidence            9999999999999999999997765

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A

Probab=100.00  E-value=3.8e-49  Score=359.99  Aligned_cols=171  Identities=30%  Similarity=0.521  Sum_probs=127.5

Q ss_pred             cCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEcc----CCCceEEEEEeCCCCcccCceEEEEEEEec---C
Q 027051            5 EKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLV----CCPEFKLEFFFGPNPYFKNYVLAKKFIMID---E   77 (229)
Q Consensus         5 i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~----d~~~f~l~F~F~~NpYF~N~vLtK~y~~~~---~   77 (229)
                      .+|||+||++||+||++++.+|+++|+++|+||+||+|++..    +++||+|+|+|++||||+|++|+|+|++..   +
T Consensus       108 ~kgIP~FWltvl~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~  187 (359)
T 3fs3_A          108 TPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCD  187 (359)
T ss_dssp             STTSTTHHHHHHHTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC-----
T ss_pred             cCCCCcHHHHHHHhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCC
Confidence            359999999999999999999999999999999999999863    356999999999999999999999999974   3


Q ss_pred             CceeeeceeeceeeeecCCCcccccccCCCC----------------cccccccccCCCCCCCcc------ccHHHHHhh
Q 027051           78 VKLIFDEAIGSKIKWYPEKCLTRECSTRKPK----------------KSFFNFFKSLEFPFYDES------IDVKLLHQL  135 (229)
Q Consensus        78 ~~~~~~~~~~t~I~Wk~gkdlt~~~~~kk~~----------------~SFF~fF~~~~~p~~~~~------~dee~~~~l  135 (229)
                      |+|++..++||+|+||+|||+|+++++||++                .||||||+++.+|++++.      ..++++++|
T Consensus       188 ~dp~~~~se~t~I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l  267 (359)
T 3fs3_A          188 NEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMII  267 (359)
T ss_dssp             ---CEEEEEECCCCBCTTCCTTCC----------------------CCCGGGGSCCBCC------------CHHHHHHHH
T ss_pred             CCcccccceeeeeeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHH
Confidence            4676678999999999999999987655432                399999999998876531      123588999


Q ss_pred             hhhhHHHHHhhhccccchhhhhccccCCccccccccccCC
Q 027051          136 EHDYKIGVTIKKEIVCHAISWFCGDATCGRRTKRKIEYDN  175 (229)
Q Consensus       136 ~~D~eig~~i~d~IiP~al~yy~g~~~~~~d~~~~~~~~~  175 (229)
                      +.||+||++|+++|||+||.||||++.++++++-.++.+-
T Consensus       268 ~~DfeIGe~Ikd~IiP~av~yftGea~e~e~~~~~~d~~~  307 (359)
T 3fs3_A          268 EGDYEVALTIKERIIPYAVDYYLGIIIESESNSIVSDVDS  307 (359)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTCC--------------
T ss_pred             HHhHHHHHHHHhceecChHHhhCCcccccccCCccccccc
Confidence            9999999999999999999999999998776555444443

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A

Probab=100.00  E-value=2.4e-46  Score=331.19  Aligned_cols=153  Identities=16%  Similarity=0.217  Sum_probs=130.2

Q ss_pred             cccCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEc------cCCCceEEEEEeCC-CCcccCceEEEEEEEe
Q 027051            3 NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRL------VCCPEFKLEFFFGP-NPYFKNYVLAKKFIMI   75 (229)
Q Consensus         3 e~i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~------~d~~~f~l~F~F~~-NpYF~N~vLtK~y~~~   75 (229)
                      ++|+|||+||++||+||++++.+|+++|++||+||+||+|+++      ++++||+|+|+|++ ||||+|++|||+|++.
T Consensus        49 eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~  128 (264)
T 2zd7_A           49 AYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIK  128 (264)
T ss_dssp             HHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEEEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEE
T ss_pred             HHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEEEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEec
Confidence            5789999999999999999999999999999999999999995      45679999999999 9999999999999998


Q ss_pred             cC--C-ceeeeceeeceeeeecCC-CcccccccCCCC-----------cccccccccCCCCCCCccccHHHHHhhhhhhH
Q 027051           76 DE--V-KLIFDEAIGSKIKWYPEK-CLTRECSTRKPK-----------KSFFNFFKSLEFPFYDESIDVKLLHQLEHDYK  140 (229)
Q Consensus        76 ~~--~-~~~~~~~~~t~I~Wk~gk-dlt~~~~~kk~~-----------~SFF~fF~~~~~p~~~~~~dee~~~~l~~D~e  140 (229)
                      .+  | .+.+.+|+||+|+||+|+ ++|++++++|++           .|||+||+++..++.+         .+..|++
T Consensus       129 ~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~~~~r~~~~SFF~fF~~~~~~~~~---------~~~~d~e  199 (264)
T 2zd7_A          129 KGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMKTIFGWFRWTGLKPGK---------EFPHGDS  199 (264)
T ss_dssp             CCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHHHHHHHHHTSHHHHTTCCSSSTTS---------SSTTHHH
T ss_pred             ccCCCCCCCceeEeecccccCCCccccchhhhhhccccccccccCCCCCCcceecCCCCCCccc---------cccCchh
Confidence            64  3 233358999999999976 456655544321           3999999998876543         1456899


Q ss_pred             HHHHhhhccccchhhhhccccCCc
Q 027051          141 IGVTIKKEIVCHAISWFCGDATCG  164 (229)
Q Consensus       141 ig~~i~d~IiP~al~yy~g~~~~~  164 (229)
                      ||++|+++|||+||.||+|++.++
T Consensus       200 ig~~Ikd~I~P~al~yf~g~~~d~  223 (264)
T 2zd7_A          200 LASLFSEEIYPFCVKYYAEAQRDL  223 (264)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhccCHHHHhccccccc
Confidence            999999999999999999987754

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1

Probab=100.00  E-value=1.8e-45  Score=318.85  Aligned_cols=139  Identities=27%  Similarity=0.531  Sum_probs=108.4

Q ss_pred             cccCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccCC-CceEEEEEeCCCCcccCceEEEEEEEecCCcee
Q 027051            3 NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCC-PEFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLI   81 (229)
Q Consensus         3 e~i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d~-~~f~l~F~F~~NpYF~N~vLtK~y~~~~~~~~~   81 (229)
                      ++|+|||+||++||+||+.++.+|+++|+++|+||+||+|++.+++ .||+|+|+|++||||+|++|||+|++..+|++ 
T Consensus        73 eII~~IP~FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g~~-  151 (225)
T 2e50_A           73 ELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDP-  151 (225)
T ss_dssp             HHHTTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------
T ss_pred             HHHhccccHHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCCCc-
Confidence            5789999999999999999999999999999999999999998765 49999999999999999999999999988877 


Q ss_pred             eeceeeceeeeecCCCcccccccCCC----------CcccccccccCCCCCCCccccHHHHHhhhhhhHHHHHhhhcccc
Q 027051           82 FDEAIGSKIKWYPEKCLTRECSTRKP----------KKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVC  151 (229)
Q Consensus        82 ~~~~~~t~I~Wk~gkdlt~~~~~kk~----------~~SFF~fF~~~~~p~~~~~~dee~~~~l~~D~eig~~i~d~IiP  151 (229)
                        +++||+|+||+|+|+|++..++++          ..|||+||+++..|+               +++||++|+++|||
T Consensus       152 --~s~~t~I~Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~~---------------~~eige~ikd~i~P  214 (225)
T 2e50_A          152 --SSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAG---------------ADELGEVIKDDIWP  214 (225)
T ss_dssp             --CEEECCCCBCSSCCC----------------------CGGGGC---------------------CHHHHHHHHHTTTT
T ss_pred             --ccCCCcceecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCCc---------------hhHHHHHHHhCccc
Confidence              689999999999999988654432          249999999986553               24899999999999


Q ss_pred             chhhhhcc
Q 027051          152 HAISWFCG  159 (229)
Q Consensus       152 ~al~yy~g  159 (229)
                      +||.||+-
T Consensus       215 ~av~yy~~  222 (225)
T 2e50_A          215 NPLQYYLV  222 (225)
T ss_dssp             CSHHHHCC
T ss_pred             cHHHHhcC
Confidence            99999983

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}

Probab=100.00  E-value=4.3e-45  Score=309.97  Aligned_cols=140  Identities=20%  Similarity=0.389  Sum_probs=114.5

Q ss_pred             cccCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccC-CCceEEEEEeCC--CCcccCceEEEEEEEecCCc
Q 027051            3 NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVC-CPEFKLEFFFGP--NPYFKNYVLAKKFIMIDEVK   79 (229)
Q Consensus         3 e~i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d-~~~f~l~F~F~~--NpYF~N~vLtK~y~~~~~~~   79 (229)
                      ++|++||+||++||+|||+++.++ +.|+++|+||+||+|++..+ +.||+|+|+|++  ||||+|++|||+|++..+|.
T Consensus        43 ~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~~g~  121 (193)
T 3kyp_A           43 EIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDNNQE  121 (193)
T ss_dssp             HHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEECCBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC----
T ss_pred             HHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEEEEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcCCCC
Confidence            578899999999999999999865 79999999999999998755 459999999998  89999999999999988776


Q ss_pred             eeeeceeeceeeeecCCCcccccccCCC-------CcccccccccCCCCCCCccccHHHHHhhhhhhHHHHHhhhccccc
Q 027051           80 LIFDEAIGSKIKWYPEKCLTRECSTRKP-------KKSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCH  152 (229)
Q Consensus        80 ~~~~~~~~t~I~Wk~gkdlt~~~~~kk~-------~~SFF~fF~~~~~p~~~~~~dee~~~~l~~D~eig~~i~d~IiP~  152 (229)
                      +   .++||+|+||+|+|+|+++.++|+       ..||||||+++..|++               ++||++|+++|||+
T Consensus       122 ~---~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~wF~~~~~~~~---------------~eige~ikd~i~P~  183 (193)
T 3kyp_A          122 K---VVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQDK---------------PDVGELIRREIWHN  183 (193)
T ss_dssp             C---CCCCCCCCCCSSCCCCC--------------CCCTTTTCCSSCCTTT---------------TCTTHHHHTTTTTC
T ss_pred             e---eeccceeeeecCCCcchhhhhccccccccCCcchHhhhcCCCCcCCc---------------hHHHHHHHhCeeeC
Confidence            5   368999999999999987766554       2599999999887654               48999999999999


Q ss_pred             hhhhhcccc
Q 027051          153 AISWFCGDA  161 (229)
Q Consensus       153 al~yy~g~~  161 (229)
                      ||+||+|+.
T Consensus       184 ~l~yy~ge~  192 (193)
T 3kyp_A          184 PLSYYLGLE  192 (193)
T ss_dssp             HHHHHC---
T ss_pred             HHHHhCCCC
Confidence            999999974

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A

Probab=99.30  E-value=7.3e-13  Score=123.40  Aligned_cols=58  Identities=22%  Similarity=0.292  Sum_probs=55.5

Q ss_pred             cccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcccc
Q 027051          169 RKIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSY  226 (229)
Q Consensus       169 ~~~~~~~~l~~~v~~~~~~l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~~r~~  226 (229)
                      ..+||..+||+.|++||.||++||.+|++|+++|.+|+.+||+||.++|+|||.||+.
T Consensus        80 ~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~e  137 (417)
T 2ayu_A           80 QDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSR  137 (417)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3488999999999999999999999999999999999999999999999999999974

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A

Probab=99.28  E-value=2.5e-12  Score=117.50  Aligned_cols=57  Identities=14%  Similarity=0.091  Sum_probs=51.6

Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhccccc
Q 027051          171 IEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSYH  227 (229)
Q Consensus       171 ~~~~~~l~~~v~~~~~~l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~~r~~~  227 (229)
                      .++..+||+.|++||++|++||.++++|+++|.+|+.+||+||.+||+|||.||+..
T Consensus        41 ~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eI   97 (359)
T 3fs3_A           41 DDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREA   97 (359)
T ss_dssp             ----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999853

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1

Probab=99.09  E-value=7.2e-11  Score=101.87  Aligned_cols=56  Identities=27%  Similarity=0.296  Sum_probs=51.3

Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcccc
Q 027051          171 IEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSY  226 (229)
Q Consensus       171 ~~~~~~l~~~v~~~~~~l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~~r~~  226 (229)
                      .|.....++++++||++|++||.++++|+++|.+|+.+||+||.++|+|||.||+.
T Consensus        18 ~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~e   73 (225)
T 2e50_A           18 DGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSE   73 (225)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence            56777899999999999999999999999999999999999999999999999974

>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}

Probab=80.15  E-value=3  Score=27.46  Aligned_cols=35  Identities=14%  Similarity=0.207  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 027051          188 LRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDT  222 (229)
Q Consensus       188 l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~  222 (229)
                      +.+||....-|...+..|+.+|...|+.+=||+..
T Consensus        12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIld   46 (51)
T 2jo8_A           12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILD   46 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHH
Confidence            34667777888999999999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d2ayua1	301	d.305.1.1 (A:70-370) Nucleosome assembly protein,	2e-31
d2ayua1	301	d.305.1.1 (A:70-370) Nucleosome assembly protein,	6e-04
d2e50a1	222	d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie	7e-27
d2e50a1	222	d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie	4e-04

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (287), Expect = 2e-31
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 26/185 (14%)

Query: 3   NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRL---VCCPEFKLEFFFGP 59
            + KG+P+FWLTA++N  ++   IT  D E L+YL DI    L       +    F    
Sbjct: 111 EQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSA 170

Query: 60  NPYFKNYVLAKKFIMIDEV----KLIFDEAIGSKIKWYP-EKCLTRECSTRK-------- 106
           NP+F N +L K +    E+      I+D A G +I W      +T +   RK        
Sbjct: 171 NPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQ 230

Query: 107 --------PKKSFFNFFKSLEFPF--YDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISW 156
                   P +SFFNFF   +      DE ++  L  +L  DY IG  +K +++  A+ W
Sbjct: 231 VRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDW 290

Query: 157 FCGDA 161
           F G A
Sbjct: 291 FTGAA 295

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 24/38 (63%)

Query: 183 QKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPL 220
           +K+ SL+ ++ EL ++E EF  +  + E  +++  +P+
Sbjct: 25  EKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPI 62

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 7e-27
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 29/164 (17%)

Query: 5   EKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCPE-FKLEFFFGPNPYF 63
              +PNFW+T   N+  ++  + + DEEA+ YL  ++ +        ++++F+F  NPYF
Sbjct: 75  IAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYF 134

Query: 64  KNYVLAKKFIMIDEVKLIFDEAIGSKIKWYPEKCLTRECSTRKPK----------KSFFN 113
           +N VL+K+F M +        +  ++IKW   K +T+  S  + K          +SFF 
Sbjct: 135 ENKVLSKEFHMNES---GDPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFT 191

Query: 114 FFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVCHAISWF 157
           +F        DE               +G  IK +I  + + ++
Sbjct: 192 WFTDHSDAGADE---------------LGEVIKDDIWPNPLQYY 220

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 172 EYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTK 223
             D  +     + IE + +++ E+++L  +  E+  K E  Y KL QP   K
Sbjct: 19  GADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQK 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d2ayua1	301	Nucleosome assembly protein, NAP {Baker's yeast (S	100.0
d2e50a1	222	Protein SET {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ayua1	301	Nucleosome assembly protein, NAP {Baker's yeast (S	99.4
d2e50a1	222	Protein SET {Human (Homo sapiens) [TaxId: 9606]}	99.0

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-48  Score=347.05  Aligned_cols=163  Identities=36%  Similarity=0.643  Sum_probs=142.1

Q ss_pred             cccCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccCCC-ceEEEEEe--CCCCcccCceEEEEEEEecC--
Q 027051            3 NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCP-EFKLEFFF--GPNPYFKNYVLAKKFIMIDE--   77 (229)
Q Consensus         3 e~i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d~~-~f~l~F~F--~~NpYF~N~vLtK~y~~~~~--   77 (229)
                      ..++|||+||++||+||+.++.+|+++|+++|+||+||+|++..++. ||+|+|+|  ++||||+|++|||+|++...  
T Consensus       111 ~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf~l~F~F~f~~N~yF~N~vLtK~y~~~~~~~  190 (301)
T d2ayua1         111 EQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELG  190 (301)
T ss_dssp             -CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCC
T ss_pred             ccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCceEEEEEecCCCCCCCCCeEEEEEEEecCCC
Confidence            45689999999999999999999999999999999999999887765 99999999  68999999999999999753  


Q ss_pred             --Cceeeeceeeceeeeec-CCCcccccccCCCC----------------cccccccccCCCCCCCc--cccHHHHHhhh
Q 027051           78 --VKLIFDEAIGSKIKWYP-EKCLTRECSTRKPK----------------KSFFNFFKSLEFPFYDE--SIDVKLLHQLE  136 (229)
Q Consensus        78 --~~~~~~~~~~t~I~Wk~-gkdlt~~~~~kk~~----------------~SFF~fF~~~~~p~~~~--~~dee~~~~l~  136 (229)
                        +..++.+++||+|+||+ |+++|++.++++++                .||||||+++..|+++.  +.+++++++|.
T Consensus       191 ~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~~SFF~fF~~~~~~~~~~~~~~~e~~~~~l~  270 (301)
T d2ayua1         191 YSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLA  270 (301)
T ss_dssp             SSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCSCCCTTSSSTTHHHHHHHH
T ss_pred             CCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCCCCCCcCCCCCCCCCccccchhhHHHHHHHh
Confidence              23445689999999999 68999887766543                29999999998876543  45577899999


Q ss_pred             hhhHHHHHhhhccccchhhhhccccCCcc
Q 027051          137 HDYKIGVTIKKEIVCHAISWFCGDATCGR  165 (229)
Q Consensus       137 ~D~eig~~i~d~IiP~al~yy~g~~~~~~  165 (229)
                      .||+||.+|+++|||+||.||||+|.+.+
T Consensus       271 ~D~eig~~i~d~iiP~Av~yytGea~~~~  299 (301)
T d2ayua1         271 LDYSIGEQLKDKLIPRAVDWFTGAALEFE  299 (301)
T ss_dssp             HHHHHHHHHHHTTTTTHHHHHHSHHHHHH
T ss_pred             hhHHHHHHHHhcccccHHHhhCchhhhcc
Confidence            99999999999999999999999998764

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-46  Score=319.14  Aligned_cols=138  Identities=29%  Similarity=0.563  Sum_probs=107.8

Q ss_pred             cccCCCCchHHHHHhcChhHHhhcchhhHHHhccchhceeeEccCCC-ceEEEEEeCCCCcccCceEEEEEEEecCCcee
Q 027051            3 NEEKGVPNFWLTAMKNNSLLAQEITKADEEALKYLIDIKSSRLVCCP-EFKLEFFFGPNPYFKNYVLAKKFIMIDEVKLI   81 (229)
Q Consensus         3 e~i~~IP~FW~~vl~N~~~l~~~I~~~De~iL~~L~dI~ve~~~d~~-~f~l~F~F~~NpYF~N~vLtK~y~~~~~~~~~   81 (229)
                      ++|+|||+||++||+||+.++.+|++.|+++|+||+||+|++.+++. ||+|+|+|++||||+|++|+|+|++..+|++ 
T Consensus        73 ~iI~gIP~FW~~~l~n~~~l~~~I~~~D~~~L~~L~dI~v~~~~~~~~~f~i~F~F~~N~yF~N~~L~K~y~~~~~~~~-  151 (222)
T d2e50a1          73 ELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDP-  151 (222)
T ss_dssp             HHHTTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------
T ss_pred             HHhccCccHHHHHHHcCcchhhhCCHHHHHHHHhhhheeeeeccCCCCceEEEEEeCCCCcccCCeEEEEEEecCCCCc-
Confidence            57899999999999999999999999999999999999999988765 9999999999999999999999999888766 


Q ss_pred             eeceeeceeeeecCCCcccccccCCCC----------cccccccccCCCCCCCccccHHHHHhhhhhhHHHHHhhhcccc
Q 027051           82 FDEAIGSKIKWYPEKCLTRECSTRKPK----------KSFFNFFKSLEFPFYDESIDVKLLHQLEHDYKIGVTIKKEIVC  151 (229)
Q Consensus        82 ~~~~~~t~I~Wk~gkdlt~~~~~kk~~----------~SFF~fF~~~~~p~~~~~~dee~~~~l~~D~eig~~i~d~IiP  151 (229)
                        +++||+|+||+|+|+|++..+++++          .||||||+++..|+.+               +||++|+++|||
T Consensus       152 --~~~~t~I~Wk~gkd~t~k~~~~~~~~~~~~~~~~~~SFFnfF~~~~~~~~d---------------eI~~~i~d~i~p  214 (222)
T d2e50a1         152 --SSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGAD---------------ELGEVIKDDIWP  214 (222)
T ss_dssp             --CEEECCCCBCSSCCC----------------------CGGGGC------CH---------------HHHHHHHHTTTT
T ss_pred             --ccccccceecCCCccccccccccccCccccccCCCCChhhcCCCCCCCCch---------------HHHHHHHhhhch
Confidence              6899999999999999876554432          3999999998766543               799999999999


Q ss_pred             chhhhhc
Q 027051          152 HAISWFC  158 (229)
Q Consensus       152 ~al~yy~  158 (229)
                      +||.||+
T Consensus       215 ~av~yyL  221 (222)
T d2e50a1         215 NPLQYYL  221 (222)
T ss_dssp             CSHHHHC
T ss_pred             hhhHhhc
Confidence            9999997

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=3.8e-14  Score=125.07  Aligned_cols=57  Identities=23%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             ccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcccc
Q 027051          170 KIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSY  226 (229)
Q Consensus       170 ~~~~~~~l~~~v~~~~~~l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~~r~~  226 (229)
                      .+||..+||+.|++||.||++||.++++|+++|.+|+.+||+||.++|+|||.||..
T Consensus        12 ~~~~i~~Lp~~v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~   68 (301)
T d2ayua1          12 DSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSR   68 (301)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            479999999999999999999999999999999999999999999999999999974

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.5e-10  Score=97.52  Aligned_cols=59  Identities=25%  Similarity=0.286  Sum_probs=52.3

Q ss_pred             ccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcccc
Q 027051          168 KRKIEYDNPAAGNLVQKIESLRKIEIELNKLEAEFLEKRRKEEANYVKLCQPLDTKVSY  226 (229)
Q Consensus       168 ~~~~~~~~~l~~~v~~~~~~l~~~q~~~~~~~~~~~~e~~~le~~y~~~~~pl~~~r~~  226 (229)
                      .+.+|+++++++++++||++|++||.+++.|+++|.+|+.+||+||.++|+|||.+|+-
T Consensus        15 ~~~~~~~~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R~~   73 (222)
T d2e50a1          15 SNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSE   73 (222)
T ss_dssp             C-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            44578999999999999999999999999999999999999999999999999999964