Citrus Sinensis ID: 027070

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKSRAEEEVPKEEKEEEEVPKEEKKESKSEEAEKKPEEPASST
ccccccccccccccccccccccccccccccccccEEcccccccHHHHEEcccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEEEEccEEEEEEccEEcccccEEEccccccEEEEEEEcccccccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccEcEEEccccEEEEcccccHHHHHHHcEEEEEEcccHHHHHHcccccEEEEEcccccEEEEEEEcccEEEEEEcEEEccccEEccccccccEEEEEEEccccccccHHEEEEEEccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccEccccccccccccccccccccccccccc
masttegdhreeevphnededtgaqvapIVKLEEVavttgeedEDAILDLKAKLYRFdkdgnqwkergAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPmmsvqehagndkscvwhaadyadgelkdELFCIRFGSVENCKSFMEMVHEVAESQkkkeenkdASATAGLLEKlsveenktedksraeeevpkeekeeeevpkeekkeskseeaekkpeepasst
masttegdhreeevphnededtgaqvapIVKLEEVavttgeedeDAILDLKAKLyrfdkdgnqwkergagtvkllkhkvtgkvrlvmrqskTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAesqkkkeenkdasataglleklsveenktedksraeeevpkeekeeeevpkeekkeskseeaekkpeepasst
MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKSRAeeevpkeekeeeevpkeekkeskseeaekkpeepassT
***************************PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV*****************************************************************************
********************************EEV**TTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV*****************************************************************************
***********************AQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVH***************SATAGLLEKLSV*************************************************
*********************TGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK********************************************************************
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MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVxxxxxxxxxxxxxxxxxxxxxEEEVPKEEKKESKSEEAEKKPEEPASST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query228 2.2.26 [Sep-21-2011]
Q8RWG8217 Ran-binding protein 1 hom yes no 0.855 0.898 0.766 6e-79
P92985219 Ran-binding protein 1 hom no no 0.798 0.831 0.754 1e-77
Q9LMK7228 Ran-binding protein 1 hom no no 0.763 0.763 0.8 2e-74
P43487201 Ran-specific GTPase-activ yes no 0.710 0.805 0.473 9e-33
Q9ERU9 3053 E3 SUMO-protein ligase Ra yes no 0.578 0.043 0.488 4e-32
P34022203 Ran-specific GTPase-activ no no 0.679 0.763 0.478 6e-32
P41920201 Ran-specific GTPase-activ yes no 0.583 0.661 0.492 3e-31
Q3T0M7206 Ran-specific GTPase-activ no no 0.539 0.597 0.515 5e-31
Q09717215 Ran-specific GTPase-activ yes no 0.583 0.618 0.507 5e-30
P49792 3224 E3 SUMO-protein ligase Ra no no 0.526 0.037 0.504 1e-29
>sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2 Back     alignment and function desciption
 Score =  293 bits (751), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 154/201 (76%), Positives = 174/201 (86%), Gaps = 6/201 (2%)

Query: 11  EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAG 70
           EEE   NEDEDTGAQVAPIV+LEEVAVTTGEEDED ILDLK+KLYRFDKDG+QWKERGAG
Sbjct: 15  EEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAG 74

Query: 71  TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELK 130
           TVK LKH+V+GK+RLVMRQSKTLKICANHLV   MSVQEHAGNDKSCVWHA D++DGELK
Sbjct: 75  TVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELK 134

Query: 131 DELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKS-- 188
           DELFCIRF SVENCK+FM+   EVAES+++KEE+KDAS TAGLLEKL+VEE ++E K   
Sbjct: 135 DELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKESEKKPVE 194

Query: 189 RAEE----EVPKEEKEEEEVP 205
           +AEE    E  +E+K EE VP
Sbjct: 195 KAEENKKSEAVEEKKTEESVP 215

Arabidopsis thaliana (taxid: 3702)
>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1 Back     alignment and function description
>sp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1 Back     alignment and function description
>sp|P43487|RANG_HUMAN Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2 Back     alignment and function description
>sp|P34022|RANG_MOUSE Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1 PE=1 SV=2 Back     alignment and function description
>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1 SV=1 Back     alignment and function description
>sp|Q3T0M7|RANG_BOVIN Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2 SV=1 Back     alignment and function description
>sp|Q09717|RANG_SCHPO Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1 Back     alignment and function description
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
225434536223 PREDICTED: ran-binding protein 1 homolog 0.881 0.901 0.835 2e-90
449455021216 PREDICTED: ran-binding protein 1 homolog 0.947 1.0 0.780 3e-88
449517628216 PREDICTED: LOW QUALITY PROTEIN: ran-bind 0.947 1.0 0.775 9e-88
224105935218 predicted protein [Populus trichocarpa] 0.947 0.990 0.739 7e-87
225439378221 PREDICTED: ran-binding protein 1 homolog 0.942 0.972 0.743 4e-85
224055337218 predicted protein [Populus trichocarpa] 0.925 0.967 0.790 4e-83
255551194217 ran binding protein, putative [Ricinus c 0.864 0.907 0.776 2e-82
356576095223 PREDICTED: ran-binding protein 1 homolog 0.951 0.973 0.718 3e-81
356535743218 PREDICTED: ran-binding protein 1 homolog 0.938 0.981 0.713 6e-80
297745871180 unnamed protein product [Vitis vinifera] 0.684 0.866 0.923 8e-80
>gi|225434536|ref|XP_002276692.1| PREDICTED: ran-binding protein 1 homolog c-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/207 (83%), Positives = 183/207 (88%), Gaps = 6/207 (2%)

Query: 22  TGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG 81
           TGAQVAPIVKLEEVAVTTGEEDEDA+LDLKAKLYRFDKDGNQWKERGAG+VKLLKHK +G
Sbjct: 23  TGAQVAPIVKLEEVAVTTGEEDEDAVLDLKAKLYRFDKDGNQWKERGAGSVKLLKHKESG 82

Query: 82  KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSV 141
           KVRLVMRQSKTLKICANHLVLP MSVQEHAGNDKSCVWHA D+ADGELKDELFCIRF SV
Sbjct: 83  KVRLVMRQSKTLKICANHLVLPTMSVQEHAGNDKSCVWHATDFADGELKDELFCIRFASV 142

Query: 142 ENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKSRAEEEVPKEEKEE 201
           ENCKSFME V EVAESQ+KKEENKDASA AGLLEKLSVEE +TEDK  AEEE P   KEE
Sbjct: 143 ENCKSFMEKVQEVAESQQKKEENKDASAAAGLLEKLSVEEKETEDK--AEEEKPVAAKEE 200

Query: 202 EEVPKEEKKESKSEEAEKKPEEPASST 228
           +E   E+ K     +AEKK EEP+SST
Sbjct: 201 KETESEQGK----TDAEKKVEEPSSST 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449455021|ref|XP_004145252.1| PREDICTED: ran-binding protein 1 homolog b-like [Cucumis sativus] gi|449471757|ref|XP_004153400.1| PREDICTED: ran-binding protein 1 homolog b-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517628|ref|XP_004165847.1| PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog b-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224105935|ref|XP_002313984.1| predicted protein [Populus trichocarpa] gi|222850392|gb|EEE87939.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439378|ref|XP_002262903.1| PREDICTED: ran-binding protein 1 homolog c [Vitis vinifera] gi|296081117|emb|CBI18249.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055337|ref|XP_002298487.1| predicted protein [Populus trichocarpa] gi|118481604|gb|ABK92744.1| unknown [Populus trichocarpa] gi|222845745|gb|EEE83292.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551194|ref|XP_002516644.1| ran binding protein, putative [Ricinus communis] gi|223544216|gb|EEF45739.1| ran binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356576095|ref|XP_003556169.1| PREDICTED: ran-binding protein 1 homolog b-like [Glycine max] Back     alignment and taxonomy information
>gi|356535743|ref|XP_003536403.1| PREDICTED: ran-binding protein 1 homolog c-like [Glycine max] Back     alignment and taxonomy information
>gi|297745871|emb|CBI15927.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
TAIR|locus:2007467228 SIRANBP "AT1G07140" [Arabidops 0.811 0.811 0.790 2.4e-76
TAIR|locus:2060837217 AT2G30060 "AT2G30060" [Arabido 0.820 0.861 0.776 5.7e-75
TAIR|locus:2178798219 RANBP1 "RAN binding protein 1" 0.828 0.863 0.736 4.6e-73
ZFIN|ZDB-GENE-040426-2548233 ranbp1 "RAN binding protein 1" 0.820 0.802 0.433 1.1e-34
UNIPROTKB|P43487201 RANBP1 "Ran-specific GTPase-ac 0.807 0.915 0.438 2.2e-34
UNIPROTKB|Q5ZJ38208 RANBP1 "Uncharacterized protei 0.820 0.899 0.439 2.8e-34
UNIPROTKB|E2RHK9209 RANBP1 "Uncharacterized protei 0.820 0.894 0.455 2.8e-34
UNIPROTKB|J9P3T9239 RANBP1 "Uncharacterized protei 0.807 0.769 0.459 3.6e-34
MGI|MGI:96269203 Ranbp1 "RAN binding protein 1" 0.824 0.926 0.437 4.6e-34
RGD|1310521203 Ranbp1 "RAN binding protein 1" 0.815 0.916 0.436 4.6e-34
TAIR|locus:2007467 SIRANBP "AT1G07140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 147/186 (79%), Positives = 165/186 (88%)

Query:     6 EGDHR-EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQW 64
             E +HR EEE   NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+KLYRFDKD NQW
Sbjct:     7 EHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQW 66

Query:    65 KERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADY 124
             KERGAGTVK LKHK TGK+RLVMRQSKTLKICANH V   MSVQEH GN+KSCVWHA D+
Sbjct:    67 KERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDF 126

Query:   125 ADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKT 184
             ADGELKDELFCIRF S+ENCK+FM+   EVAES+++KEE+KDA+ TAGLLEKL+VEE KT
Sbjct:   127 ADGELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVEETKT 186

Query:   185 EDKSRA 190
             E+K+ A
Sbjct:   187 EEKTEA 192
GO:0000060 "protein import into nucleus, translocation" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0046907 "intracellular transport" evidence=IEA
TAIR|locus:2060837 AT2G30060 "AT2G30060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178798 RANBP1 "RAN binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2548 ranbp1 "RAN binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P43487 RANBP1 "Ran-specific GTPase-activating protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ38 RANBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHK9 RANBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P3T9 RANBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:96269 Ranbp1 "RAN binding protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310521 Ranbp1 "RAN binding protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWG8RBP1B_ARATHNo assigned EC number0.76610.85520.8986yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
cd13179126 cd13179, RanBD_RanBP1, Ran-binding domain 7e-45
cd13176116 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-bin 3e-43
cd00835111 cd00835, RanBD_family, Ran-binding domain 3e-43
pfam00638122 pfam00638, Ran_BP1, RanBP1 domain 2e-37
smart00160130 smart00160, RanBD, Ran-binding domain 5e-34
cd13172113 cd13172, RanBD2_RanBP2_insect-like, Ran-binding pr 4e-31
cd13171112 cd13171, RanBD1_RanBP2_insect-like, Ran-binding pr 3e-30
cd13173110 cd13173, RanBD3_RanBP2_insect-like, Ran-binding pr 1e-27
cd13177117 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding pr 2e-27
cd13178117 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding pr 4e-27
COG5171211 COG5171, YRB1, Ran GTPase-activating protein (Ran- 5e-27
cd13174113 cd13174, RanBD4_RanBP2_insect-like, Ran-binding pr 5e-18
cd13175106 cd13175, RanBD5_RanBP2_insect-like, Ran-binding pr 4e-13
cd13170109 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding d 4e-13
cd13180113 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-b 6e-10
cd13181111 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding dom 9e-07
cd13169112 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, 2e-04
PRK04195482 PRK04195, PRK04195, replication factor C large sub 0.001
>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain Back     alignment and domain information 
 Score =  145 bits (369), Expect = 7e-45
 Identities = 63/117 (53%), Positives = 83/117 (70%), Gaps = 3/117 (2%)

Query: 34  EVAVTTGEEDEDAILDLKAKLYRFDK--DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSK 91
           EV V T EEDE+ +  ++AKLYRFD   D  +WKERG G VK+LKHK T K+RL+MR+ K
Sbjct: 1   EVEVKTNEEDEEELFKMRAKLYRFDTENDPPEWKERGTGDVKILKHKETNKIRLLMRRDK 60

Query: 92  TLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSF 147
           TLKICANH + P M ++ + G+D++ VW+  AD+AD E K EL  IRF + EN + F
Sbjct: 61  TLKICANHYITPEMKLKPNCGSDRAWVWNTPADFADEEPKPELLAIRFANAENAQKF 117

RanBP1 interacts specifically with GTP-charged Ran. RanBP1 does not activate GTPase activity of Ran, but does markedly increase GTP hydrolysis by the RanGTPase-activating protein (RanGAP1). In both mammalian cells and in yeast, RanBP1 acts as a negative regulator of Regulator of chromosome condensation 1 (RCC1) by inhibiting RCC1-stimulated guanine nucleotide release from Ran. In addition to Ran, RanBP1 has been shown to interact with Exportin-1 and Importin subunit beta-1 which docks the NPC at the cytoplasmic side of the nuclear pore complex. RabBP1 contains a single RanBD. The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 126
>gnl|CDD|241330 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 1 and 3 Back     alignment and domain information
>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain Back     alignment and domain information
>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain Back     alignment and domain information
>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain Back     alignment and domain information
>gnl|CDD|241326 cd13172, RanBD2_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 2 Back     alignment and domain information
>gnl|CDD|241325 cd13171, RanBD1_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 1 Back     alignment and domain information
>gnl|CDD|241327 cd13173, RanBD3_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 3 Back     alignment and domain information
>gnl|CDD|241331 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 Back     alignment and domain information
>gnl|CDD|241332 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 and 4 Back     alignment and domain information
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|241328 cd13174, RanBD4_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 4 Back     alignment and domain information
>gnl|CDD|241329 cd13175, RanBD5_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 5 Back     alignment and domain information
>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241334 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain Back     alignment and domain information
>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1 Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 228
smart00160130 RanBD Ran-binding domain. Domain of apporximately 100.0
COG5171211 YRB1 Ran GTPase-activating protein (Ran-binding pr 100.0
cd00835122 RanBD Ran-binding domain. Ran-binding domain; This 100.0
PF00638122 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is 100.0
KOG0864215 consensus Ran-binding protein RANBP1 and related R 99.93
KOG2724487 consensus Nuclear pore complex component NPAP60L/N 99.59
cd00837104 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog 99.48
KOG0866327 consensus Ran-binding protein RANBP3 [Intracellula 99.32
cd01207111 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. 99.17
PF00568111 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1 99.12
cd01206111 Homer Homer type EVH1 domain. Homer type EVH1 doma 99.11
smart00461106 WH1 WASP homology region 1. Region of the Wiskott- 98.34
PF08553 794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 97.56
KOG4590 409 consensus Signal transduction protein Enabled, con 96.53
cd01205105 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. 96.52
PF07933160 DUF1681: Protein of unknown function (DUF1681); In 96.11
PF06058122 DCP1: Dcp1-like decapping family; InterPro: IPR010 95.11
KOG3671 569 consensus Actin regulatory protein (Wiskott-Aldric 94.95
COG5167 776 VID27 Protein involved in vacuole import and degra 89.75
KOG2500253 consensus Uncharacterized conserved protein [Funct 81.22
>smart00160 RanBD Ran-binding domain Back     alignment and domain information 
Probab=100.00  E-value=5.2e-43  Score=283.79  Aligned_cols=129  Identities=44%  Similarity=0.795  Sum_probs=124.7

Q ss_pred             cceeeeccccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCC-CeEEEEEEeCCcceEEeeeeecCC
Q 027070           26 VAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVT-GKVRLVMRQSKTLKICANHLVLPM  104 (228)
Q Consensus        26 f~Piv~L~~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ket-gk~RIVMR~d~t~KV~lN~~I~~~  104 (228)
                      |+|+|+|+.|+|.||||||++||+.|||||+|+++.+.|++||+|+||||+|+++ +++|||||++++++|||||+|+++
T Consensus         1 ~~~~~~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~   80 (130)
T smart00160        1 FKPVVPLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKS   80 (130)
T ss_pred             CCCcccCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCC
Confidence            7899999999999999999999999999999998888999999999999999999 999999999999999999999999


Q ss_pred             ceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027070          105 MSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEV  154 (228)
Q Consensus       105 M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~  154 (228)
                      |+++++.++.++|+|++.|++|++.++++|+|||+++++|++|+.+|++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ea  130 (130)
T smart00160       81 MTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIFEEA  130 (130)
T ss_pred             cEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHHHhC
Confidence            99999888889999999999999999999999999999999999999875

Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00835 RanBD Ran-binding domain Back     alignment and domain information
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm Back     alignment and domain information
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain Back     alignment and domain information
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain Back     alignment and domain information
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events Back     alignment and domain information
>cd01206 Homer Homer type EVH1 domain Back     alignment and domain information
>smart00461 WH1 WASP homology region 1 Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms] Back     alignment and domain information
>cd01205 WASP WASP-type EVH1 domain Back     alignment and domain information
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex Back     alignment and domain information
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2500 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
1k5d_B201 Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl 2e-34
4gpt_B140 Crystal Structure Of Kpt251 In Complex With Crm1-ra 2e-32
3m1i_B191 Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex 4e-32
4hat_B140 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 5e-32
4gmx_B141 Crystal Structure Of Kpt185 In Complex With Crm1-Ra 2e-31
1rrp_B134 Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 5e-31
1xke_A130 Solution Structure Of The Second Ran-Binding Domain 5e-24
2crf_A150 Solution Structure Of The Ran_bp1 Domain Of Ran-Bin 3e-08
2y8f_A138 Structure Of The Ran-Binding Domain From Human Ranb 3e-08
2y8g_A138 Structure Of The Ran-Binding Domain From Human Ranb 2e-06
3oan_A130 Crystal Structure Of The Ran Binding Domain From Th 7e-06
3n7c_A130 Crystal Structure Of The Ran Binding Domain From Th 1e-05
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 201 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 24  AQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTG 81
            Q  PIV L E  + T EEDE+ +  ++AKL+RF  + D  +WKERG G VKLLKHK  G
Sbjct: 25  PQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKG 84
Query: 82  KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGS 140
            +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K EL  IRF +
Sbjct: 85  AIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLN 144
Query: 141 VENCKSFM----EMVHEVAESQKKKEENKD--ASATAGLLEKLSVEENKTED 186
            EN + F     E   E+ E +KK    K+  A   A  LE LSV+E   ED
Sbjct: 145 AENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKED 196
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 191 Back     alignment and structure
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 140 Back     alignment and structure
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With Crm1-Ran-Ranbp1 Length = 141 Back     alignment and structure
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 134 Back     alignment and structure
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From Human Ranbp2 Length = 130 Back     alignment and structure
>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding Protein-3 Length = 150 Back     alignment and structure
>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3 (Wild Type) Length = 138 Back     alignment and structure
>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3 (E352a-R353v Double Mutant) Length = 138 Back     alignment and structure
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130 Back     alignment and structure
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 8e-38
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 7e-37
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 1e-33
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 2e-32
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 8e-31
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 4e-30
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 2e-29
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 7e-29
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 3e-13
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Length = 134 Back     alignment and structure
 Score =  127 bits (320), Expect = 8e-38
 Identities = 62/133 (46%), Positives = 84/133 (63%), Gaps = 1/133 (0%)

Query: 25  QVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKV 83
              P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+L+HK +GK+
Sbjct: 1   HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKI 60

Query: 84  RLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVEN 143
           RL+MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E   IRF + E 
Sbjct: 61  RLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEE 120

Query: 144 CKSFMEMVHEVAE 156
              F     E   
Sbjct: 121 AALFKCKFEEAQS 133
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130 Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150 Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Length = 130 Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Length = 191 Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138 Back     alignment and structure
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Length = 201 Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
1k5d_B201 RAN-specific GTPase-activating protein; ranbp1, ra 100.0
4hat_B140 RAN-specific GTPase-activating protein 1; heat rep 100.0
3m1i_B191 RAN-specific GTPase-activating protein 1; heat rep 100.0
1rrp_B134 Nuclear pore complex protein NUP358; complex (smal 100.0
1xke_A130 RAN-binding protein 2; beta barrel, pleckstrin-hom 100.0
3n7c_A130 ABR034WP; nuclear pore complex, NUP2, RAN-binding 100.0
2y8g_A138 Ranbp3-B, RAN-binding protein 3; protein transport 100.0
2crf_A150 RAN binding protein 3; RAN_BP1 domain, ranbp3, str 100.0
2ec1_A125 Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass 100.0
1qc6_A130 EVH1 domain from ENA/VAsp-like protein; AN incompl 99.74
1ddw_A120 GLGF-domain protein homer; pleckstrin homology dom 99.52
1i2h_A168 PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 99.43
1evh_A112 WH1 domain, protein (MENA EVH1 domain); molecular 99.31
1egx_A115 VAsp, vasodilator-stimulated phosphoprotein; EVH1, 99.3
1xod_A118 Spred1; sprouty, EVH1, peptide-binding, signaling 99.13
2jp2_A126 Spred-2, sprouty-related, EVH1 domain-containing p 99.1
3syx_A130 Sprouty-related, EVH1 domain-containing protein 1; 98.8
1mke_A152 WIP - N-WAsp, fusion protein consisting of wiskott 97.49
2ifs_A169 N-WAsp, wiskott-aldrich syndrome protien ineractin 97.44
2lyd_A134 Decapping protein 1; DCP1, XRN1, transcription-pro 95.65
1tqz_A133 Necap1; endocytosis, structural genomics, endocyto 95.25
2qkl_A127 DCP1 protein, SPBC3B9.21 protein; protein-protein 93.89
2oqb_A117 Histone-arginine methyltransferase CARM1; protein 92.69
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Back     alignment and structure
Probab=100.00  E-value=5.3e-55  Score=376.52  Aligned_cols=186  Identities=43%  Similarity=0.725  Sum_probs=136.4

Q ss_pred             CCCCCCCCCC-ccCCCCCCCCCCCCccceeeeccccccccCcccceeEEEEeeeEEEE--ccCCCCcceeceeEEEEEee
Q 027070            1 MASTTEGDHR-EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKH   77 (228)
Q Consensus         1 ~~~~~~~~~~-~~~~~~~eee~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLyrf--dke~~~WkERGvG~LkLlk~   77 (228)
                      ||++...... +++++++++++++++|+|||+|+.++|.||||||++||++|||||+|  +++.++|++||+|+||||+|
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~   80 (201)
T 1k5d_B            1 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKH   80 (201)
T ss_dssp             ---------------------CCCCCCCCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEEC
T ss_pred             CCCccccccccccccccccccCCCCccccccccccccccCCCccceEEEEEeeeEEEecccccCCCccccceEEEEEEEc
Confidence            7764333222 45557788999999999999999999999999999999999999999  66678999999999999999


Q ss_pred             CCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEe-eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027070           78 KVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE  156 (228)
Q Consensus        78 ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a-~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e  156 (228)
                      ++++++|||||+|+++||||||+|+|+|+++++.+++++|+|++ .||+|+.+++++|+|||+++++|+.|+.+|++|++
T Consensus        81 k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~  160 (201)
T 1k5d_B           81 KEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRK  160 (201)
T ss_dssp             SSSCCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997 89999999999999999999999999999999999


Q ss_pred             Hhhhhc------ccchhhHHHHHhhhcccccccccc
Q 027070          157 SQKKKE------ENKDASATAGLLEKLSVEENKTED  186 (228)
Q Consensus       157 ~~~~~~------~~~~~~~~~~~~e~l~~~~~~~~~  186 (228)
                      .+.+..      +++.++.+|++|++|||++.++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (201)
T 1k5d_B          161 EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKED  196 (201)
T ss_dssp             HHHHHCC-----------------------------
T ss_pred             HHHhhhccccccccchhHHHHhHHhhccccccccch
Confidence            987542      456789999999999998876543
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B* Back     alignment and structure
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Back     alignment and structure
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Back     alignment and structure
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Back     alignment and structure
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4 Back     alignment and structure
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A* Back     alignment and structure
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Back     alignment and structure
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4 Back     alignment and structure
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A Back     alignment and structure
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens} Back     alignment and structure
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4 Back     alignment and structure
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens} Back     alignment and structure
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster} Back     alignment and structure
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11 Back     alignment and structure
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A* Back     alignment and structure
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 228
d1rrpb_134 b.55.1.3 (B:) Nuclear pore complex protein Nup358 4e-43
d1k5db_146 b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human 5e-39
d2crfa1137 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H 8e-37
d1xkea1118 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H 9e-35
d1egxa_115 b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei 3e-22
d1evha_111 b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId 1e-21
d1mkea1114 b.55.1.4 (A:31-144) Actin regulatory protein WASP 1e-04
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (353), Expect = 4e-43
 Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 1/131 (0%)

Query: 27  APIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRL 85
            P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+L+HK +GK+RL
Sbjct: 3   EPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRL 62

Query: 86  VMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCK 145
           +MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E   IRF + E   
Sbjct: 63  LMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAA 122

Query: 146 SFMEMVHEVAE 156
            F     E   
Sbjct: 123 LFKCKFEEAQS 133
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137 Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 Back     information, alignment and structure
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
d1k5db_146 Ran-binding protein 1, Ranbp1 {Human (Homo sapiens 100.0
d1rrpb_134 Nuclear pore complex protein Nup358 {Human (Homo s 100.0
d1xkea1118 Ran-binding protein 2 {Human (Homo sapiens) [TaxId 100.0
d2crfa1137 Ran binding protein 3 {Human (Homo sapiens) [TaxId 100.0
d1evha_111 Enabled {Mouse (Mus musculus) [TaxId: 10090]} 99.96
d1egxa_115 Vasodilator-stimulated phosphoprotein (VASP) {Huma 99.96
d1mkea1114 Actin regulatory protein WASP {Rat (Rattus norvegi 99.2
d1i2ha_145 Homer {Rat (Rattus norvegicus) [TaxId: 10116]} 99.1
d1xoda1114 Sprouty-related, EVH1 domain-containing protein 1, 98.79
d1tqza1133 Necap1 {Mouse (Mus musculus) [TaxId: 10090]} 94.26
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-46  Score=305.74  Aligned_cols=140  Identities=46%  Similarity=0.806  Sum_probs=132.6

Q ss_pred             CCCCccceeeeccccccccCcccceeEEEEeeeEEEEccCC--CCcceeceeEEEEEeeCCCCeEEEEEEeCCcceEEee
Q 027070           21 DTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDG--NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN   98 (228)
Q Consensus        21 ~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLyrfdke~--~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN   98 (228)
                      +.|++|+|||+|+.++++||||+|++||+.|||||+|+.++  ++|++||+|+||||+|++++++|||||++++++||||
T Consensus         1 ~~d~~~~pvv~l~~~ev~tgEE~E~~lf~~r~Kl~~f~~~~~~~~WkerGvG~lkilk~k~t~~~RllmR~d~~~kv~lN   80 (146)
T d1k5db_           1 NHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICAN   80 (146)
T ss_dssp             CCCCCCCCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEE
T ss_pred             CCCCCccccCcCCCcccccCccCceEEEEEeeEEEEEcccCCCCCccceeEEEEEEEEcCCCCeEEEEEEEcCCCcEEEE
Confidence            46899999999999999999999999999999999998643  5799999999999999999999999999999999999


Q ss_pred             eeecCCceeeecCCCCceEEEEe-eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhhh
Q 027070           99 HLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK  160 (228)
Q Consensus        99 ~~I~~~M~l~~~~gsdKa~vw~a-~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~~  160 (228)
                      |+|+++|.++++.++.++|+|++ .|++++++++++|+|||++++.|++|+++|++|++.++.
T Consensus        81 ~~i~~~m~~~~~~~~~~~~~~~~~~d~~~~~~k~~~~~irfk~~e~a~~f~~~~~e~k~~~~~  143 (146)
T d1k5db_          81 HYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEE  143 (146)
T ss_dssp             EECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEecCCceecccCCCceeEEEEecCCCccCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988999999995 688999999999999999999999999999999999864
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]} Back     information, alignment and structure
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure