Citrus Sinensis ID: 027136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MINSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCWC
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHcccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHcccHHHHHHHHHccccHccccccccccHHHHHHHcccHHHHHHHHHccccHHccccccccHHHHHHHHccHHHHHHHHHHHcHHHHHccccccccHHHHHHcccccccccccccHHHHHHEEccc
Coil and Loop (DISEMBL)
minsddqgedeyyvryWPLYRMIekndwrgvedfvtnhpdaltaktvapgssTIFHAIVELLVDVESDEATCLLDKlaskvdpqtlarqdehgYTALFLCAGKGNLRALKVLVKcnpnltnirggldtlpiheaaYKGHKNTFQYLLEVThgvdiysgndGARVLLLLIAANLYDVALDLLklhptigrdsidSRRIVLNKLAqkpyafasgsrlGRLQRLIYNCWC
Flexible Loop (DISEMBL)
minsddqgedeyyVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHptigrdsidsRRIVLNKLAQkpyafasgsrlgrlQRLIYNCWC
Low Complexity Region (SEG)
MINSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCWC
Disordered region (IsUnstruct)
**********EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCW*
Disordered Region (DISOPRED)
MI*****GEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCWC
Disordered Region (DISEMBL)
********EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCWC
Disordered Region (DISPRO)
*****DQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCWC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCWC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
P0C6S7	1260	Ankyrin repeat and steril	yes	no	0.400	0.072	0.354	0.0001
Q8BIZ1	1259	Ankyrin repeat and steril	yes	no	0.400	0.072	0.354	0.0001
Q7Z6G8	1248	Ankyrin repeat and steril	yes	no	0.400	0.072	0.354	0.0001
Q9CZK6	655	Ankyrin repeat and SAM do	no	no	0.449	0.155	0.325	0.0002
Q9TZM3	2393	Leucine-rich repeat serin	yes	no	0.440	0.041	0.330	0.0005
A5PMU4	1280	Ankyrin repeat and steril	no	no	0.462	0.082	0.330	0.0008

>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus GN=Anks1b PE=1 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 19/110 (17%)

Query: 95  TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT---- 150
           T L L A  G LR +K+++  +PNL +      T P+H AA  GHK   Q LLE      
Sbjct: 163 TPLDLAALYGRLRVVKMIISAHPNLMSCNTRKHT-PLHLAARNGHKAVVQVLLEAGMDVS 221

Query: 151 ---------HGVDIYSGNDGARVLLLL-IAANLYD----VALDLLKLHPT 186
                    H   ++   D  RVLL   I AN+ D      LD+LK HP+
Sbjct: 222 CQTEKGSALHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPS 271

Isoform 3 can regulate global protein synthesis by altering nucleolar numbers.
Rattus norvegicus (taxid: 10116)

>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus GN=Anks1b PE=1 SV=3

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 19/110 (17%)

Query: 95  TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT---- 150
           T L L A  G LR +K+++  +PNL +      T P+H AA  GHK   Q LLE      
Sbjct: 163 TPLDLAALYGRLRVVKMIISAHPNLMSCNTRKHT-PLHLAARNGHKAVVQVLLEAGMDVS 221

Query: 151 ---------HGVDIYSGNDGARVLLLL-IAANLYD----VALDLLKLHPT 186
                    H   ++   D  RVLL   I AN+ D      LD+LK HP+
Sbjct: 222 CQTEKGSALHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPS 271

Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.

Mus musculus (taxid: 10090)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 19/110 (17%)

Query: 95  TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT---- 150
           T L L A  G LR +K+++  +PNL +      T P+H AA  GHK   Q LLE      
Sbjct: 163 TPLDLAALYGRLRVVKMIISAHPNLMSCNTRKHT-PLHLAARNGHKAVVQVLLEAGMDVS 221

Query: 151 ---------HGVDIYSGNDGARVLLLL-IAANLYD----VALDLLKLHPT 186
                    H   ++   D  RVLL   I AN+ D      LD+LK HP+
Sbjct: 222 CQTEKGSALHEAALFGKVDVVRVLLETGIDANIKDSLGRTVLDILKEHPS 271

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

>sp|Q9CZK6|ANKS3_MOUSE Ankyrin repeat and SAM domain-containing protein 3 OS=Mus musculus GN=Anks3 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 18/120 (15%)

Query: 50  GSSTIFHAIVE--LLVDVESDEATCLLDKLASKVDPQTLA-----------RQDEHGYTA 96
           G  TI H ++E  + V+V + E    L  LAS    +++A            +D HG+TA
Sbjct: 80  GHDTIVHLLLEAGVSVNVPTPEGQTPL-MLASSCGNESIAYFLLQQGAELEMKDIHGWTA 138

Query: 97  LFLCAGKGNLRALKVLVKCNPNLTNIRGGL-DTLPIHEAAYKGHKNTFQYLLEVTHGVDI 155
           LF C   G+ + +K L++   N  N+R  +    P+ EAA  GH+   QY L   HGV +
Sbjct: 139 LFHCTSAGHQQMVKFLLESGAN-ANVREPVYGYTPLMEAAASGHEIIVQYFL--NHGVKV 195

Mus musculus (taxid: 10090)

>sp|Q9TZM3|LRK1_CAEEL Leucine-rich repeat serine/threonine-protein kinase 1 OS=Caenorhabditis elegans GN=lrk-1 PE=1 SV=6

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 80  KVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGH 139
           KV+P    R D HG T L L A  G L +L+ ++  +PN  N+        +H AA  G 
Sbjct: 44  KVNPWVWNRVDRHGRTPLMLAAHNGKLDSLRTILMLSPNSLNLVNDRGKTALHMAAESGE 103

Query: 140 KNTFQYLLEVTHGVD-IYSGNDGARVLLLLIAANLYDVALDLL 181
            +    L+E+  G D + S N+G   L L   A   +VA  L+
Sbjct: 104 TSIVLELVEL--GSDPMKSDNEGHCALELAQMAGHNEVAAKLI 144

Determines polarized sorting of synaptic vesicle (SV) proteins to the axons by excluding SV proteins from the dendrite-specific transport machinery in the Golgi. Role in stress response. Appears to antagonize the effects of pink-1 both in the regulation of axon guidance and stress response.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
           ++  G T L L A  G L+ +++L+  +PNL +      T P+H AA  GH  T Q LLE
Sbjct: 156 RNSRGETPLDLAALYGRLQVVRMLLTAHPNLMSCNTRKHT-PLHLAARNGHYATVQVLLE 214

Query: 149 VTHGVDIYSGNDGAR-----------VLLLL---IAANLYD----VALDLLKLHPTIGRD 190
               V+  +    A            V LLL   I AN+ D     ALD+L+ HP+    
Sbjct: 215 ADMDVNTQTEKGSALHEAALFGKMDVVQLLLDSGIDANIRDCQGRTALDILREHPSQKSQ 274

Query: 191 SIDS 194
            I S
Sbjct: 275 QIAS 278

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
9293890	653	unnamed protein product [Arabidopsis tha	0.881	0.306	0.324	6e-20
255544802	590	ankyrin repeat-containing protein, putat	0.903	0.347	0.334	8e-20
147826943	327	hypothetical protein VITISV_001418 [Viti	0.894	0.620	0.296	2e-18
147838601	332	hypothetical protein VITISV_008901 [Viti	0.885	0.605	0.312	3e-18
359494194	626	PREDICTED: uncharacterized protein LOC10	0.929	0.337	0.337	5e-18
225425076	563	PREDICTED: ankyrin repeat-containing pro	0.832	0.335	0.318	8e-18
255590066	395	ankyrin repeat-containing protein, putat	0.872	0.501	0.341	1e-17
225464352	603	PREDICTED: uncharacterized protein LOC10	0.920	0.346	0.305	1e-17
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.832	0.239	0.338	2e-17
296087932	655	unnamed protein product [Vitis vinifera]	0.938	0.325	0.323	4e-17

>gi|9293890|dbj|BAB01793.1| unnamed protein product [Arabidopsis thaliana]

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 22/222 (9%)

Query: 16  YWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLD 75
           Y  L++ I+  +    +DF+  +P+ALTA   + G + I  A++   + +        ++
Sbjct: 50  YLVLFKNIDSGELEATKDFLDRNPEALTAILTSNGDTPIHKAVLSGHIKI--------VE 101

Query: 76  KLASKV-DP-QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHE 133
           ++  ++ DP Q L  ++++GYTAL   A  G +R  + LV   P L ++R   + +PI  
Sbjct: 102 EIIRRIHDPEQVLKIKNDNGYTALTYAATGGIVRIAECLVNKCPGLVSVRNAKEHIPIVV 161

Query: 134 AAYKGHKNTFQYLLEVTHGVDI--------YSGNDGARVLLLLIAANLYDVALDLLKLHP 185
           A+  GHK+  QYL   T   D+        + G +GA ++   I   LY +ALDL++ +P
Sbjct: 162 ASLYGHKHLVQYLYSHTPLSDLDPCDDSDEHKGKNGAMLVTNCIVDGLYCIALDLIQRYP 221

Query: 186 TIG--RDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNC 225
            +   RDS +   I+   LAQ PYAF SG+RL   QR IY+C
Sbjct: 222 KLAYTRDSDNDTAIM--ALAQTPYAFPSGTRLAFWQRWIYSC 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544802|ref|XP_002513462.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223547370|gb|EEF48865.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 103/215 (47%), Gaps = 10/215 (4%)

Query: 15  RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLL 74
           R+  LY+      W   +      P ALTAK         F  I  L V + +  +   +
Sbjct: 8   RHLALYKAAVHGQWITAKRIFDEDPSALTAKISG------FEEIA-LYVAITAGHSIEFV 60

Query: 75  DKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEA 134
             + + +    +   +  G  AL   A  GNL A K+LVK NP LT  R  L+  P+H A
Sbjct: 61  QNIVNLMSEDLIGTVNRDGNNALHAAAMVGNLEAAKILVKKNPTLTQGRNVLNATPLHYA 120

Query: 135 AYKGHKNTFQYLLEVTHG--VDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSI 192
           A   H+ T ++LL VT       ++  DG R+L  LI A+ Y +AL LLK +P + R + 
Sbjct: 121 ASYAHQETVRFLLPVTRDEYPSPFTDKDGVRLLNSLITADFYGLALHLLKRYPALARGTD 180

Query: 193 DSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCWC 227
                 L+ LA+KP AF SGSRLG     +Y+ +C
Sbjct: 181 QYGFTSLDMLARKPQAFPSGSRLGFRHSFLYH-YC 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826943|emb|CAN68876.1| hypothetical protein VITISV_001418 [Vitis vinifera]

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 23/226 (10%)

Query: 16  YWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLD 75
           YW LY+ +   DW+     + ++P +  A  +      + H  V+L      + +   ++
Sbjct: 109 YWELYKAVVNGDWKSASKLLEDNPTSFLAP-IRRNDPPMLHIAVDL-----GEASMGFVE 162

Query: 76  KLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAA 135
           KL   +  + L+ QD  G TALF  A  GN++A K+LV  NP+L NI    + +P+H A 
Sbjct: 163 KLVEFMPSEALSLQDSDGATALFTAAMAGNIKAAKLLVDKNPSLPNICSYGNLVPLHSAL 222

Query: 136 YKGHKNTFQYLLEVTHGVDIY----SGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDS 191
             GHK    YLL VT   D+Y    +   G  +L   +     DVAL L++ +P +    
Sbjct: 223 KYGHKELTSYLLSVTRD-DVYPSPFADKPGFELLRRALMVGFNDVALHLVERYPDLATCH 281

Query: 192 IDSRR------------IVLNKLAQKPYAFASGSRLGRLQRLIYNC 225
            +                 L  LA++P+AF SGSR    Q +I++C
Sbjct: 282 FNYAHYDDDADDSDEALTPLTVLAKRPWAFRSGSRFNLWQFIIFHC 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838601|emb|CAN65057.1| hypothetical protein VITISV_008901 [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 103/221 (46%), Gaps = 20/221 (9%)

Query: 19  LYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLA 78
           LY+ +   DW      + ++P   +A+      S + H  VEL      +     ++KL 
Sbjct: 118 LYKAVLNGDWESTSQLLVHNPRLFSAR-FGTDDSPVLHIAVEL-----GEARMGFVEKLV 171

Query: 79  SKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKG 138
             +  + LA +D  G TALF  A  GN++A+K+L   NP L NI    D  P+H A   G
Sbjct: 172 EFMGSEDLALRDSDGATALFNAARAGNIKAVKLLENKNPRLPNICNRYDFAPLHTAVKYG 231

Query: 139 HKNTFQYLLEVTHGVD---IYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSR 195
           HK    YLL VT   +    +S + G  +L   +    +DVAL L++ +P +     DS 
Sbjct: 232 HKELTLYLLSVTRDNEPPYPFSNSPGIELLRRALMVGFHDVALYLVERYPDLATCHFDSA 291

Query: 196 R-----------IVLNKLAQKPYAFASGSRLGRLQRLIYNC 225
                         L  LA++P+AF SGSR    Q +IY+C
Sbjct: 292 PHNDANDSDEDFTPLTVLAKRPWAFRSGSRFKLRQLIIYHC 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494194|ref|XP_002266127.2| PREDICTED: uncharacterized protein LOC100258383 [Vitis vinifera]

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 110/228 (48%), Gaps = 17/228 (7%)

Query: 7   QGEDEYY--VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVD 64
           Q  DEY   +    LY+ +   DW      + ++P  L+A+      S I H  VEL   
Sbjct: 29  QDTDEYVSEIDRLELYKAVLNGDWERASQLLVHNPQLLSAR-FGTDDSGILHIAVEL--- 84

Query: 65  VESDEATCLLDKLAS---KVDP-QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLT 120
              +     ++KL     + DP +TLA +D    TALF  A  GN++A+K LVK N NL 
Sbjct: 85  --GEARMGFVEKLVEFMLREDPSETLALRDSDDATALFNAARAGNIKAVKFLVKKNQNLP 142

Query: 121 NIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDL 180
           NI       P+H A   GHK    YLL VT   D++SG+ G  +L   +    +DVAL L
Sbjct: 143 NICNRQHFAPLHTAVKYGHKELTLYLLSVTRD-DVWSGSSGIELLGRALMVGFHDVALRL 201

Query: 181 LKLHPTIGRDSIDSRR----IVLNKLAQKPYAFASGSRLGRLQRLIYN 224
           ++ +  +     DS        L  LA++P+AF SGS     Q +IY+
Sbjct: 202 VERYSDLATCHFDSAPHEDFAPLTVLAKRPWAFRSGSCFNLCQLMIYH 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 9/198 (4%)

Query: 18  PLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKL 77
           PLY    K DW+  E      P A+   T+  G  T  H          + +    ++++
Sbjct: 58  PLYGAAMKGDWKTAEGIFKMFPPAVRM-TITQGRDTTLHI-------AAAAKHVQFVEEM 109

Query: 78  ASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYK 137
              ++P+ L  Q+++  TAL   A  G +R  +V+VK N NL  I+GG   +P+H AA  
Sbjct: 110 VKMMEPKDLELQNKYSNTALCFAAASGIVRIAEVMVKKNENLPMIQGGGGMIPLHMAALL 169

Query: 138 GHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRI 197
           GH    +YL   T    +  G D   +L   I+ +LYDVALD+L  HP +  +  ++   
Sbjct: 170 GHSEMVRYLYNKTVHEHLAPG-DWVGLLNTCISTDLYDVALDILHHHPALAVERDENDET 228

Query: 198 VLNKLAQKPYAFASGSRL 215
            L+ LA+KP AF+ G +L
Sbjct: 229 ALHLLARKPSAFSGGDQL 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590066|ref|XP_002535165.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223523865|gb|EEF27218.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 105/211 (49%), Gaps = 13/211 (6%)

Query: 14  VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCL 73
            R+  LY    K DW+  + ++  +P A+ A T+  GS T+ H              T  
Sbjct: 173 TRHIVLYVAALKGDWKTAKIYLRWNPHAVRA-TITRGSETVLHI-------AAGARHTLF 224

Query: 74  LDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHE 133
           + KL  ++ P  LA Q++ G TAL   A  G     KVLV  N  L  +RG     P++ 
Sbjct: 225 VKKLVKRMTPDDLALQNKVGNTALCFAAVSGITEIAKVLVNKNKTLPLVRGSQGATPLYM 284

Query: 134 AAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHP--TIGRDS 191
           A   G ++   YL  VT   D+ SG D   +L+  I +NL+DVAL+L++ HP   I RD 
Sbjct: 285 AVLLGRRDMVWYLYSVTDDKDL-SGEDRIGLLIAAITSNLFDVALELIRNHPELAIARDG 343

Query: 192 IDSRRIVLNKLAQKPYAFASGSRLGRLQRLI 222
            D     L+ L++KP AF SG++L   QR +
Sbjct: 344 ND--ETALHVLSRKPSAFYSGTQLRLGQRCL 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464352|ref|XP_002263244.1| PREDICTED: uncharacterized protein LOC100265216 [Vitis vinifera]

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 17/226 (7%)

Query: 8   GEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVES 67
              E+Y  Y  LY+ +   DW      + + P + +A  +    S + H  VEL      
Sbjct: 27  SSSEFY--YLELYKAVLNGDWESAPKLLKDDPRSFSAP-IGTDDSRMLHIAVEL-----G 78

Query: 68  DEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLD 127
           +     ++KL   +  + LA +D  G TALF  A  GN++A+K+LV  NP+L NI    +
Sbjct: 79  EARMGFVEKLVEFMPSEALALRDSDGATALFNAARAGNIKAVKLLVNKNPSLPNICQRDN 138

Query: 128 TLPIHEAAYKGHKNTFQYLLEVTHGVD---IYSGNDGARVLLLLIAANLYDVALDLLKLH 184
             P+H A   GHK    YLL VT   +    +S + G  +L   +    +DVAL L++ +
Sbjct: 139 FAPLHSAVRYGHKELTLYLLSVTRDDEPPYPFSNSPGFELLRRALMVGFHDVALHLVERY 198

Query: 185 PTIGRDSIDSRRIV------LNKLAQKPYAFASGSRLGRLQRLIYN 224
           P +   +    +        L  LA++P+AF SGSR    Q +IY+
Sbjct: 199 PDLATCNFGDAKDSDDDKAPLTVLAKRPWAFRSGSRFNLWQLIIYH 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 98/198 (49%), Gaps = 9/198 (4%)

Query: 27  DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL 86
           DW+  + F+ ++P A+ A+ +   S T  H              T  +++L   + P  L
Sbjct: 186 DWKSAKAFLESNPQAVRAR-ITRRSETALHI-------AAGARHTRFVEELVKLMKPDDL 237

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           A Q++ G TAL   A  G  R  +V+V  N  L  IRG     P++ AA  GHK+  +YL
Sbjct: 238 ALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYL 297

Query: 147 LEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP 206
             VT   D  +  D   +L+  I ANL+DVAL +L   P +      +    L+ LA+KP
Sbjct: 298 YSVTEE-DNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGDTALHVLARKP 356

Query: 207 YAFASGSRLGRLQRLIYN 224
            AF SGS+LG   R IY+
Sbjct: 357 LAFYSGSQLGIWHRCIYS 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087932|emb|CBI35215.3| unnamed protein product [Vitis vinifera]

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 13/226 (5%)

Query: 4   SDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLV 63
           S   G    + +Y  L + ++  +W  +ED + ++PD + AK + P   T  H I  L  
Sbjct: 43  SAPAGTAHIFSQYAGLIKALDGGNWNAIEDSLRSNPDLVRAK-ITPTGLTPLH-IAALAG 100

Query: 64  DVESDEATCLLDKLASKVDPQTLA-RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNI 122
            V       +++KL  K+ P+ L  ++D  GYT L L A  G     + ++  N  L  I
Sbjct: 101 HVR------VVEKLVDKLKPEDLGQKEDLLGYTPLALAASDGITEIAQCMLTKNRTLAGI 154

Query: 123 RGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIY--SGNDGARVLLLLIAANLYDVALDL 180
             G + LP+  A  +G K   ++L   T    +    G +GA +L   IA+ + DVALD+
Sbjct: 155 SDGDEMLPVVIACNRGKKEMTRFLYSHTPQEKLAPGQGKNGASLLSNCIASQILDVALDI 214

Query: 181 LKLHPTIGRDSIDSRRIV-LNKLAQKPYAFASGSRLGRLQRLIYNC 225
           LK HP +   S+D  RI+ +  L Q P  F SGS+L   QR IY+C
Sbjct: 215 LKKHPRLAI-SLDMERIIPIFVLGQMPSLFKSGSQLWFWQRWIYSC 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.691	0.556	0.259	1.9e-07
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.889	0.301	0.270	9.9e-07
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.647	0.243	0.309	2.6e-06
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.894	0.324	0.267	8.3e-06
UNIPROTKB|F1NZ05	880	F1NZ05 "Uncharacterized protei	0.779	0.201	0.286	0.00015
UNIPROTKB|F1P6V7	835	TNNI3K "Uncharacterized protei	0.616	0.167	0.294	0.00024
UNIPROTKB|Q8HXA6	588	ASB15 "Ankyrin repeat and SOCS	0.563	0.217	0.349	0.00026
UNIPROTKB|F1MPD8	259	LOC516896 "Uncharacterized pro	0.775	0.679	0.274	0.00031
POMBASE|SPBP16F5.05c	146	SPBP16F5.05c "ribosome biogene	0.330	0.513	0.311	0.00036
UNIPROTKB|A0JNG5	835	TNNI3K "TNNI3 interacting kina	0.594	0.161	0.297	0.00041

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 43/166 (25%), Positives = 73/166 (43%)

Query:     9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESD 68
             +D+   +   LY+   K DW+     +      +  K +   S T+ H  V         
Sbjct:    81 DDKLRAKGVQLYQAALKGDWKAANGIIIEQKYIIYQK-ITSKSETVLHIAV-----AAKH 134

Query:    69 EATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDT 128
             E    +  L   ++   LA ++  G TAL   A  G +   K+L++ N +L  IRGG  T
Sbjct:   135 EG--FVRNLLGSLESNDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKT 192

Query:   129 LPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY 174
              PIH AA  GH    +YL + T   + ++  +   +   +I+A++Y
Sbjct:   193 TPIHMAALFGHGEMVKYLYKNTRFRE-FNDEEFVNLFHAVISADIY 237

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 60/222 (27%), Positives = 91/222 (40%)

Query:    13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATC 72
             Y  Y  L + I +     V+DF+ +HPD++           ++     LL      +   
Sbjct:    78 YYEYIQLSQGISQGRVEIVKDFLNHHPDSVDEWI------NLYET--PLLKACACGKPEI 129

Query:    73 LLDKLASKVDPQTLARQDEHG--YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLP 130
             + + L      Q L +  ++   +T L + A  GN+   + LV  NP L  I G    +P
Sbjct:   130 VKELLRRMTPEQMLPKMSQNASYHTPLTVVAVSGNMEIAEALVAKNPKLLEIPGINGQIP 189

Query:   131 IHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY---DVALDLLKLHPTI 187
             +  A         +YL   T  V +    DG    LL + A  Y   D+ALDL  +   +
Sbjct:   190 VVVAVENTQMEMARYLYTRTP-VQVLLDQDGYHGSLLFLNAIFYKMLDIALDLFNMSRRL 248

Query:   188 G---RDSIDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNCW 226
                    I+S  I++  LA KP  F  G  LG L R IY+ W
Sbjct:   249 AVTKHSQIESIPIIV--LASKPDLFPGGCYLGPLTRFIYS-W 287

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 52/168 (30%), Positives = 80/168 (47%)

Query:    73 LLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLT-------NIRGG 125
             LLD++ S+   +  A        AL + AG GNL  +K L  C P+L        ++R G
Sbjct:    64 LLDEMTSRGQMENDAYCQS---LALDIAAGNGNLTRVKQL--CEPHLNQPLARNNSVRYG 118

Query:   126 LDTLPIHEAAYKGHKNTFQYLL----EVTHGVDIYSGNDGARVLLLLIAANLY---DVAL 178
             L  +P+  A+  GHK    YL     + T  + + + ND      LL+ A  Y   D+AL
Sbjct:   119 L-AIPVVRASNAGHKKVTDYLYYNHYKRTLPLVLENDNDVYWATCLLLDAIFYGFLDIAL 177

Query:   179 DLLKLHPTIGRDSIDSRRIVLNK-LAQKPYAFASGSRLGRLQRLIYNC 225
             D++K  P++       +R+ + K +A KP  F S    G  + LIY+C
Sbjct:   178 DIIKHLPSVAVTKHARQRLPIYKFIAVKPDLFRSHCNFGFWRHLIYSC 225

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 60/224 (26%), Positives = 94/224 (41%)

Query:    10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDE 69
             +EYY  Y  L + I +     V+DF+   PDA+  K + P  + +  A         + E
Sbjct:    71 NEYY-EYIQLNQGISQGRVEAVKDFLNRRPDAVD-KYINPYETPLLKACA-----YGNPE 123

Query:    70 ATCLLDKLASKVDPQTLARQDEHGY--TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLD 127
                LL  L      Q L +  ++ +  T L + A  GN+   + LV  NP L  I G   
Sbjct:   124 IVKLL--LRRMTPEQMLPKMSQNNFYNTPLTVVAVSGNMEIAEALVAKNPKLLEIPGNNG 181

Query:   128 TLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY---DVALDLLKLH 184
              +P+  A         +YL   T  V +    DG   +LL + A  Y   D+ALDL    
Sbjct:   182 EIPVVVAVENTQMEMARYLYNRTP-VQVLLEKDGFHGILLFLNAIYYKKLDMALDLFNKS 240

Query:   185 PTIGRDS---IDSRRIVLNKLAQKPYAFASGSRLGRLQRLIYNC 225
               +       I+S  I++  LA KP  F   + +G++ + +  C
Sbjct:   241 RRLAVTKHLRIESVPIIV--LASKPDLFPD-TLMGKVLKCLSKC 281

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NZ05 F1NZ05 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
 Identities = 55/192 (28%), Positives = 82/192 (42%)

Query:    16 YWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLD 75
             Y+P++    + D   V+ F+ + P           + T  H   +      S+    LL+
Sbjct:    48 YFPIHLAAWRGDVDIVKIFIHHGPSHSRVNEQNNENETALHCAAQY---GHSEVVAVLLE 104

Query:    76 KLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAA 135
             +L    DP     + E   T L L A  G LR +K+++K  PNL N      T P+H AA
Sbjct:   105 ELT---DPTIRNNKLE---TPLDLAALYGRLRVVKMIIKAYPNLMNCNTRKHT-PLHLAA 157

Query:   136 YKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH-PTIGRDSIDS 194
               GHK   Q LLE   G+D+    +    L         +VA  LL+    T  +DS+  
Sbjct:   158 RNGHKAVVQVLLEA--GMDVSCQTEKGSALHEAALFGKVEVARILLETGVDTNIKDSLG- 214

Query:   195 RRIVLNKLAQKP 206
              R VL+ L + P
Sbjct:   215 -RTVLDILKEHP 225

GO:0046875 "ephrin receptor binding" evidence=IEA

UNIPROTKB|F1P6V7 TNNI3K "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
 Identities = 43/146 (29%), Positives = 68/146 (46%)

Query:    37 NHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTA 96
             +H   L  K + P   T  +    L + V  D A  +   L S  D Q +      G TA
Sbjct:    82 SHVRTLMLKGLRPSRLTR-NGFTALHLAVYKDSAELITSLLHSGADIQQVGYG---GLTA 137

Query:    97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIY 156
             L +    G+L A  VL++   N+ N++  +   P+H AAY GH+   + LL+    V++ 
Sbjct:   138 LHIATIAGHLEAADVLLQHGANV-NVQDAVFFTPLHIAAYYGHEQVTRLLLKFGADVNV- 195

Query:   157 SGNDGARVLLLLIAANLYDVALDLLK 182
             SG  G R L L  A   +++A  L++
Sbjct:   196 SGEVGDRPLHLASAKGFFNIAKLLME 221

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|Q8HXA6 ASB15 "Ankyrin repeat and SOCS box protein 15" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
 Identities = 51/146 (34%), Positives = 71/146 (48%)

Query:    65 VESDEATC-LLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIR 123
             V ++   C +L+ L  K     LA  D+ G + LF  AG GN   + +L++   +  NI 
Sbjct:   216 VAAEYGHCDVLEHLIHK-GGDVLALADD-GASVLFEAAGGGNPDCISLLLEYGGS-GNIP 272

Query:   124 GGLDTLPIHEAAYKGHKNTFQYLLEVT--HGVD------IYSGNDG--ARVLLLLIAANL 173
                  LPIH AAY+GH    +YL+ VT  H +       I+S  DG  A+ L LLI  N 
Sbjct:   273 NRAGHLPIHRAAYEGHYLALKYLIPVTSKHAIQKSGLTPIHSAADGQNAQCLELLIE-NG 331

Query:   174 YDVALDLLKLHPTIGRDSIDSRRIVL 199
             +DV   LL  H +   D  D R+  L
Sbjct:   332 FDVN-SLLADHISESYD--DERKTAL 354

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|F1MPD8 LOC516896 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 0.00031, P = 0.00031
 Identities = 53/193 (27%), Positives = 81/193 (41%)

Query:    16 YWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLD 75
             Y+P++    K D   V+  + + P           + T  H   +      S+    LL+
Sbjct:    54 YFPIHLAAWKGDVEIVKILIHHGPSHSRVNEQNNENETALHCAAQY---GHSEVVAVLLE 110

Query:    76 KLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAA 135
             +L    DP     + E   T L L A  G LR +K+++  +PNL +      T P+H AA
Sbjct:   111 ELT---DPTIRNSKLE---TPLDLAALYGRLRVVKMIISAHPNLMSCNTRKHT-PLHLAA 163

Query:   136 YKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLK--LHPTIGRDSID 193
               GHK   Q LLE   G+D+    +    L         DV   LL+  +   I +DS+ 
Sbjct:   164 RNGHKAVVQVLLEA--GMDVSCQTEKGSALHEAALFGKVDVVRVLLETGIDANI-KDSLG 220

Query:   194 SRRIVLNKLAQKP 206
               R VL+ L + P
Sbjct:   221 --RTVLDILKEHP 231

GO:0046875 "ephrin receptor binding" evidence=IEA

POMBASE|SPBP16F5.05c SPBP16F5.05c "ribosome biogenesis protein Nop8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 101 (40.6 bits), Expect = 0.00036, P = 0.00036
 Identities = 24/77 (31%), Positives = 41/77 (53%)

Query:    73 LLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRAL-KVLVKCNPNLTNIRGGLDTLPI 131
             LLD++  K  PQ L+R+DE+G + L + +  G++  + K++   N  + N +       +
Sbjct:    17 LLDEIIEKC-PQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVINAQNESGNTAM 75

Query:   132 HEAAYKGHKNTFQYLLE 148
             H AA  GH    + LLE
Sbjct:    76 HWAALNGHAEICKLLLE 92

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030688 "preribosome, small subunit precursor" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|A0JNG5 TNNI3K "TNNI3 interacting kinase" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
 Identities = 42/141 (29%), Positives = 65/141 (46%)

Query:    37 NHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTA 96
             +H   L  K + P   T  +    L + V  D A  +   L S  D Q +      G TA
Sbjct:    82 SHIRTLMLKGLRPSRLTR-NGFTALHLAVYKDSAELITSLLHSGADIQQVGYG---GLTA 137

Query:    97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIY 156
             L +    G+L A  VL++   N+ N++  +   P+H AAY GH+   + LL+    V++ 
Sbjct:   138 LHIATIAGHLEAADVLLQHGANV-NVQDAVFFTPLHIAAYYGHEQVTRLLLKFGADVNV- 195

Query:   157 SGNDGARVLLLLIAANLYDVA 177
             SG  G R L L  A   +++A
Sbjct:   196 SGEVGDRPLHLASAKGFFNIA 216

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +DE G T L L A  G+L  +K+L++   + N  +  G   T P+H AA  GH    + L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDG--RT-PLHLAAKNGHLEIVKLL 59

Query: 147 LEVTHGVDIYS-GNDGARVLLLLIAANLYDVALDLLK 182
           LE   G D+ +   DG   L L       DV   LLK
Sbjct: 60  LE--KGADVNARDKDGNTPLHLAARNGNLDVVKLLLK 94

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 95  TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVD 154
           TAL L A  GNL  +K+L++   ++       +T  +H AA  G+    + LLE  HG D
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNT-ALHLAARNGNLEIVKLLLE--HGAD 86

Query: 155 I 155
           I
Sbjct: 87  I 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 97  LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI- 155
           L L A  GNL  +K+L++   ++           +H AA  G+    + LLE  HG D+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD---TDTALHLAARNGNLEIVKLLLE--HGADVN 55

Query: 156 YSGNDGARVLLLLIAANLYDVALDLLKLHPTI 187
               DG   L L       ++   LL+    I
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           +D+ G T L L A  GNL  +K+L+K   ++ N R      P+H AA  GH    + LL
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 93  GYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           G TAL   A  G L  +K L++   + N T+  G  +T  +H AA  G+    + LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDG--NT-ALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 15/127 (11%)

Query: 61  LLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPN 118
           LL    +  A  L + L +K+DP      D  G T L + A KG    + VL+K  CN +
Sbjct: 529 LLTVASTGNAALLEELLKAKLDPDI---GDSKGRTPLHIAASKGYEDCVLVLLKHACNVH 585

Query: 119 LTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVAL 178
           + +  G      +  A    H   F+ L       D ++  D     LL  AA   D+  
Sbjct: 586 IRDANG---NTALWNAISAKHHKIFRILYHFASISDPHAAGD-----LLCTAAKRNDLTA 637

Query: 179 --DLLKL 183
             +LLK 
Sbjct: 638 MKELLKQ 644

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	99.98
PHA02875	413	ankyrin repeat protein; Provisional	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.98
PHA02946	446	ankyin-like protein; Provisional	99.98
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PHA02730	672	ankyrin-like protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.79
PHA02792	631	ankyrin-like protein; Provisional	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.66
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.61
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.6
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.52
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.51
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.4
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.99
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.91
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.88
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.87
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.86
PF13606	30	Ank_3: Ankyrin repeat	98.78
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.77
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.75
KOG0522	560	consensus Ankyrin repeat protein [General function	98.74
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.73
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.71
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.68
KOG0522	560	consensus Ankyrin repeat protein [General function	98.66
PF13606	30	Ank_3: Ankyrin repeat	98.58
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.56
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.56
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.52
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.44
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.35
KOG0511	516	consensus Ankyrin repeat protein [General function	98.23
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.2
KOG2384	223	consensus Major histocompatibility complex protein	98.03
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.03
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.92
KOG2384	223	consensus Major histocompatibility complex protein	97.84
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.92
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.5
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.45
KOG2505	591	consensus Ankyrin repeat protein [General function	96.44
KOG2505	591	consensus Ankyrin repeat protein [General function	96.3
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.68
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.55
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.38
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.37
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.39

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-37  Score=211.25  Aligned_cols=176  Identities=18%  Similarity=0.133  Sum_probs=114.4

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCC
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEH   92 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   92 (227)
                      .+|+||||+|+.-|+.+++.+|++...-.++.+ |..|.||||+|+..|+.        ++++.|+... .++++..+..
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s~g~~--------evVk~Ll~r~-~advna~tn~  105 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAASNGND--------EVVKELLNRS-GADVNATTNG  105 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhhcCcH--------HHHHHHhcCC-CCCcceecCC
Confidence            356666666666666666666665444344445 66666666666666666        6666666662 1666666666


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhC
Q 027136           93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAAN  172 (227)
Q Consensus        93 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~  172 (227)
                      |.|+||+|+..|..+++.+|+++++. ++++|..|.||||-|+.-|.++++++|+..|+.++ .+|..|+||||.|...+
T Consensus       106 G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n-~qDk~G~TpL~~al~e~  183 (226)
T KOG4412|consen  106 GQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN-TQDKYGFTPLHHALAEG  183 (226)
T ss_pred             CcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcCCCCC-cccccCccHHHHHHhcc
Confidence            66666666666666666666666665 56666666666666666666666666666666666 66666666666666666


Q ss_pred             cHHHHHHHHHhCCCCccccccccccHHHHH
Q 027136          173 LYDVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       173 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      +.++...|++. +++....|++| ||+..+
T Consensus       184 ~~d~a~lLV~~-gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  184 HPDVAVLLVRA-GADTDREDKEG-TALRIA  211 (226)
T ss_pred             CchHHHHHHHh-ccceeeccccC-chHHHH
Confidence            66666666655 35555666666 666554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.5e-37  Score=211.24  Aligned_cols=176  Identities=20%  Similarity=0.133  Sum_probs=162.3

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGY   94 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   94 (227)
                      +.++.+.++.......++.+++..+...+.+.+.+|+||||+||++|+.        +++.+|++.. ...++.+|..|+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~--------eiv~fLlsq~-nv~~ddkDdaGW   73 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHV--------EIVYFLLSQP-NVKPDDKDDAGW   73 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCch--------hHHHHHHhcC-CCCCCCccccCC
Confidence            4577888888888899999999988777777567999999999999999        9999999743 366788899999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHc-CCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCc
Q 027136           95 TALFLCAGKGNLRALKVLVKC-NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANL  173 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~  173 (227)
                      ||||+|+..|+.++|+.|+.+ +++ ++..++.|.|+||||+..|+.++.++|++.|+.++ .+|..|.||||-|+.-|.
T Consensus        74 tPlhia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAavGk  151 (226)
T KOG4412|consen   74 TPLHIAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAAVGK  151 (226)
T ss_pred             chhhhhhhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHHhccc
Confidence            999999999999999999999 888 79999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccccccccHHHHH
Q 027136          174 YDVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       174 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      .+++++|+..+ +..+.+|+.|+||||.|
T Consensus       152 lkvie~Li~~~-a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  152 LKVIEYLISQG-APLNTQDKYGFTPLHHA  179 (226)
T ss_pred             hhhHHHHHhcC-CCCCcccccCccHHHHH
Confidence            99999999885 66789999999999998

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-32  Score=211.23  Aligned_cols=179  Identities=16%  Similarity=0.070  Sum_probs=157.4

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      ..+..|.||||+|+..|+.++++.|++.+.. .+.   ..|.||||+|+..|+.        +++++|++.+  ++++.+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~-~n~---~d~~TpLh~Aa~~g~~--------eiV~lLL~~G--advn~~   90 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGAL-KNL---LENEFPLHQAATLEDT--------KIVKILLFSG--MDDSQF   90 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC-CcC---CCCCCHHHHHHHCCCH--------HHHHHHHHCC--CCCCCC
Confidence            4567799999999999999999999998863 322   3478999999999999        9999999999  889999


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCC-hHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDT-LPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                      |..|.||||+|+..|+.+++++|++++++ ++.++..|+ ||||+|+..|+.+++++|++.++...  ....|.||||+|
T Consensus        91 d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~~g~TpLh~A  167 (284)
T PHA02791         91 DDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHIT  167 (284)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--ccccCccHHHHH
Confidence            99999999999999999999999999999 688888885 89999999999999999999875432  113589999999


Q ss_pred             HHhCcHHHHHHHHHhCCCCccccccccccH-HHHHhhCC
Q 027136          169 IAANLYDVALDLLKLHPTIGRDSIDSRRIV-LNKLAQKP  206 (227)
Q Consensus       169 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~  206 (227)
                      +..|+.++++.|++. +++.+.+|..|.|| ||+|+..+
T Consensus       168 a~~g~~eiv~lLL~~-gAd~n~~d~~g~t~~L~~Aa~~~  205 (284)
T PHA02791        168 IKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNK  205 (284)
T ss_pred             HHcCCHHHHHHHHHC-CCCCCcccCCCCChHHHHHHHcC
Confidence            999999999999977 56677899999987 99999855

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=5e-33  Score=224.56  Aligned_cols=190  Identities=16%  Similarity=0.136  Sum_probs=170.7

Q ss_pred             CCC-CCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhc
Q 027136            2 INS-DDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASK   80 (227)
Q Consensus         2 ~~~-~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~   80 (227)
                      |++ +...+..+++|.++||+|+..++++++++|+++++ +++..--.-+.||||+|++.|+.        .++++|+++
T Consensus        64 ve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga-dvn~~gG~l~stPLHWAar~G~~--------~vv~lLlqh  134 (600)
T KOG0509|consen   64 VESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGA-DVNAIGGVLGSTPLHWAARNGHI--------SVVDLLLQH  134 (600)
T ss_pred             HhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCC-CccccCCCCCCCcchHHHHcCcH--------HHHHHHHHc
Confidence            344 44455556689999999999999999999999998 45444236678999999999999        999999999


Q ss_pred             CCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccC-C
Q 027136           81 VDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSG-N  159 (227)
Q Consensus        81 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~  159 (227)
                      |  +++..+|..|.+|||.|+..++.-.+-+|+.++.+ ++.+|.+|.|||++|+.+|+...++.|+..++.+. ..+ .
T Consensus       135 G--Adpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~-~~d~~  210 (600)
T KOG0509|consen  135 G--ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL-LTDDN  210 (600)
T ss_pred             C--CCCceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc-ccccc
Confidence            9  99999999999999999999999999999999988 79999999999999999999887999999999998 555 9


Q ss_pred             CCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          160 DGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       160 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      .|.||||+|+..|+..++. |+.++++..+.+|.+|+||+.+|..+
T Consensus       211 ~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  211 HGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999999999999999 77788888899999999999999775

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-31  Score=217.29  Aligned_cols=190  Identities=16%  Similarity=0.098  Sum_probs=158.4

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV   81 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~   81 (227)
                      ++.+.+.+.....|.||||.|+..|+.++++.|++.+. .++.. +..+.||||.|+..|+.        +++++|++.+
T Consensus        22 l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~-~~~~~t~L~~A~~~g~~--------~~v~~Ll~~~   91 (413)
T PHA02875         22 LDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA-IPDVK-YPDIESELHDAVEEGDV--------KAVEELLDLG   91 (413)
T ss_pred             HHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-Ccccc-CCCcccHHHHHHHCCCH--------HHHHHHHHcC
Confidence            44555566667789999999999999999999998876 33334 56788999999999999        9999999988


Q ss_pred             Ccccc-ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCC
Q 027136           82 DPQTL-ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGND  160 (227)
Q Consensus        82 ~~~~~-~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  160 (227)
                        ... +..+..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|++.|++++ .++..
T Consensus        92 --~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~-~~d~~  167 (413)
T PHA02875         92 --KFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD-IEDCC  167 (413)
T ss_pred             --CcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCC
Confidence              443 34566789999999999999999999999998 68889999999999999999999999999999988 88999


Q ss_pred             CccHHHHHHHhCcHHHHHHHHHhCCCCcccccccc-ccHHHHHhhCC
Q 027136          161 GARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSR-RIVLNKLAQKP  206 (227)
Q Consensus       161 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a~~~~  206 (227)
                      |.||||+|+..|+.+++++|++.+. +.+..+..| .||+|+|+..+
T Consensus       168 g~TpL~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~~~t~l~~A~~~~  213 (413)
T PHA02875        168 GCTPLIIAMAKGDIAICKMLLDSGA-NIDYFGKNGCVAALCYAIENN  213 (413)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCC-CCCcCCCCCCchHHHHHHHcC
Confidence            9999999999999999999997744 445666555 58888888755

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=4.3e-31  Score=220.40  Aligned_cols=188  Identities=19%  Similarity=0.162  Sum_probs=155.7

Q ss_pred             CCCcCchhhhcccHHHHHHH--HhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhc--CccccchhHHHHHHHHHh
Q 027136            4 SDDQGEDEYYVRYWPLYRMI--EKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVEL--LVDVESDEATCLLDKLAS   79 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~L~~a~--~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~~~~~~~~~Ll~   79 (227)
                      .+.+.+..+..|.||||.|+  ..|+.++++.|++.+. .++.. +..|.||||+|+..+  +.        +++++|++
T Consensus        95 ~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~~~--------~iv~~Ll~  164 (480)
T PHA03100         95 YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA-NVNIK-NSDGENLLHLYLESNKIDL--------KILKLLID  164 (480)
T ss_pred             CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCC-CCCcc-CCCCCcHHHHHHHcCCChH--------HHHHHHHH
Confidence            34444556667888888888  8888888888888775 34444 778888888888888  77        88888888


Q ss_pred             cCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCC------ChHHHHHHHcCC--hHHHHHHHhhcC
Q 027136           80 KVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLD------TLPIHEAAYKGH--KNTFQYLLEVTH  151 (227)
Q Consensus        80 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~~~  151 (227)
                      .+  ++++..+..|.||||+|+..|+.+++++|++++++ ++..+..|      .||||+|+..++  .+++++|++.|+
T Consensus       165 ~g--~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~  241 (480)
T PHA03100        165 KG--VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV  241 (480)
T ss_pred             CC--CCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC
Confidence            88  77888888888888888888888888888888888 57777777      888888888888  889999999888


Q ss_pred             CCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          152 GVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       152 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +++ .++..|.||||+|+..++.+++++|++. +++.+.+|..|.||+++|+..+
T Consensus       242 din-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        242 PIN-IKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             CCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHhC
Confidence            888 8889999999999999999999999977 4467788999999999998744

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.1e-30  Score=214.01  Aligned_cols=178  Identities=12%  Similarity=-0.042  Sum_probs=163.0

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGY   94 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   94 (227)
                      .+++|+.|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  ++++..+..+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~-~~n~~-~~~g~tpL~~A~~~~~~--------~~v~~Ll~~g--a~~~~~~~~~~   69 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI-NPNFE-IYDGISPIKLAMKFRDS--------EAIKLLMKHG--AIPDVKYPDIE   69 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC-CCCcc-CCCCCCHHHHHHHcCCH--------HHHHHHHhCC--CCccccCCCcc
Confidence            4689999999999999999999886 44455 67899999999999999        9999999999  77888888899


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      ||||.|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.
T Consensus        70 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~  148 (413)
T PHA02875         70 SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDI  148 (413)
T ss_pred             cHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999987556677889999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          175 DVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       175 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +++++|++. +...+.+|..|.||||+|+..+
T Consensus       149 ~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~g  179 (413)
T PHA02875        149 KGIELLIDH-KACLDIEDCCGCTPLIIAMAKG  179 (413)
T ss_pred             HHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcC
Confidence            999999977 5566799999999999999865

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.2e-30  Score=194.26  Aligned_cols=177  Identities=15%  Similarity=0.098  Sum_probs=155.5

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhc--CccccchhHHHHHHHHHhcCCccccc
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVEL--LVDVESDEATCLLDKLASKVDPQTLA   87 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~~~~~~~~~Ll~~~~~~~~~   87 (227)
                      .-++.+.+||+.|+..|+.+.++.|+...    +.. +..|.||||+|+..+  +.        +++++|++.+  ++++
T Consensus        16 ~~~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~-~~~g~TpLh~a~~~~~~~~--------eiv~~Ll~~g--advn   80 (209)
T PHA02859         16 YLFYRYCNPLFYYVEKDDIEGVKKWIKFV----NDC-NDLYETPIFSCLEKDKVNV--------EILKFLIENG--ADVN   80 (209)
T ss_pred             HHhhccCcHHHHHHHhCcHHHHHHHHHhh----hcc-CccCCCHHHHHHHcCCCCH--------HHHHHHHHCC--CCCC
Confidence            34567789999999999999999998653    233 788999999999865  78        9999999999  8999


Q ss_pred             cCC-CCCCcHHHHHHhc---CCHHHHHHHHHcCCCccccCCCCCChHHHHHHH--cCChHHHHHHHhhcCCCccccCCCC
Q 027136           88 RQD-EHGYTALFLCAGK---GNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAY--KGHKNTFQYLLEVTHGVDIYSGNDG  161 (227)
Q Consensus        88 ~~~-~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g  161 (227)
                      .++ ..|.||||+|+..   ++.+++++|++++++ ++.+|..|.||||+|+.  .++.+++++|++.|++++ .++..|
T Consensus        81 ~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin-~~d~~g  158 (209)
T PHA02859         81 FKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL-NKDFDN  158 (209)
T ss_pred             ccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc-cccCCC
Confidence            887 4899999998753   579999999999999 79999999999999876  468999999999999999 999999


Q ss_pred             ccHHHH-HHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          162 ARVLLL-LIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       162 ~t~L~~-a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      .||||. |+..++.+++++|++. +.+.+.+|..|.||+++|..
T Consensus       159 ~t~Lh~~a~~~~~~~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        159 NNILYSYILFHSDKKIFDFLTSL-GIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhh
Confidence            999996 5667889999999976 56678999999999999876

>PHA02946 ankyin-like protein; Provisional

Probab=99.98  E-value=5.6e-31  Score=216.16  Aligned_cols=188  Identities=14%  Similarity=0.091  Sum_probs=163.6

Q ss_pred             CCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcC--ccccchhHHHHHHHHHhc
Q 027136            3 NSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELL--VDVESDEATCLLDKLASK   80 (227)
Q Consensus         3 ~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~--~~~~~~~~~~~~~~Ll~~   80 (227)
                      ..+...+..+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..+.  .        +++++|++.
T Consensus        60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GA-din~~-d~~g~TpLh~A~~~~~~~~--------e~v~lLl~~  129 (446)
T PHA02946         60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGA-DPNAC-DKQHKTPLYYLSGTDDEVI--------ERINLLVQY  129 (446)
T ss_pred             HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcC-CCCCC-CCCCCCHHHHHHHcCCchH--------HHHHHHHHc
Confidence            4455667778889999999999999999999999886 55566 8899999999988664  5        889999999


Q ss_pred             CCcccccc-CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCC--hHHHHHHHhhcCCCcccc
Q 027136           81 VDPQTLAR-QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGH--KNTFQYLLEVTHGVDIYS  157 (227)
Q Consensus        81 ~~~~~~~~-~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~  157 (227)
                      +  ++++. .+..|.|||| |+..++.+++++|++.+.+ ++.+|..|.||||+|+..++  .+++++|++.|++++ .+
T Consensus       130 G--adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin-~~  204 (446)
T PHA02946        130 G--AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS-KP  204 (446)
T ss_pred             C--CCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc-cc
Confidence            9  88874 6888999997 6667899999999999998 79999999999999887654  689999999999999 99


Q ss_pred             CCCCccHHHHHHHhC--cHHHHHHHHHhCCCCccccccccccHHHHHhhCCC
Q 027136          158 GNDGARVLLLLIAAN--LYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPY  207 (227)
Q Consensus       158 ~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  207 (227)
                      +..|+||||+|+..+  +.++++.|+.  +.+.+.+|..|.||||+|+..+.
T Consensus       205 d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        205 DHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             CCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCC
Confidence            999999999999876  6889998884  57778999999999999998653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=214.44  Aligned_cols=184  Identities=18%  Similarity=0.112  Sum_probs=159.5

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc-----
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP-----   83 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~-----   83 (227)
                      +.....|.||||.|+..|+.++++.|++.+. .++.. +..|.||||.|+..|+.        +++++|++.+..     
T Consensus        29 n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga-~~n~~-~~~~~t~L~~A~~~~~~--------~iv~~Ll~~g~~~~~~~   98 (434)
T PHA02874         29 NISVDETTTPLIDAIRSGDAKIVELFIKHGA-DINHI-NTKIPHPLLTAIKIGAH--------DIIKLLIDNGVDTSILP   98 (434)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCcch
Confidence            3445678999999999999999999999887 44455 77899999999999999        888888776511     


Q ss_pred             ----------------cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHH
Q 027136           84 ----------------QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL  147 (227)
Q Consensus        84 ----------------~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  147 (227)
                                      .+++.++..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||+|+..++.+++++|+
T Consensus        99 ~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll  177 (434)
T PHA02874         99 IPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLL  177 (434)
T ss_pred             hccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHH
Confidence                            34667788999999999999999999999999999 7999999999999999999999999999


Q ss_pred             hhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          148 EVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       148 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      +.|++++ ..+..|.||||+|+..|+.+++++|++.+ .....++..|.||||.|+..
T Consensus       178 ~~g~~~n-~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g-~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        178 EKGAYAN-VKDNNGESPLHNAAEYGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             HCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHHC
Confidence            9999999 89999999999999999999999999774 44456666777777777653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.8e-31  Score=215.74  Aligned_cols=186  Identities=15%  Similarity=0.074  Sum_probs=165.1

Q ss_pred             CCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc
Q 027136            4 SDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      .+.+.+..+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..++.        +++++|++.+  
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ga-d~n~~-d~~g~tpLh~A~~~~~~--------~iv~~Ll~~g--  180 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA-DVNIE-DDNGCYPIHIAIKHNFF--------DIIKLLLEKG--  180 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCC-CCCCc-CCCCCCHHHHHHHCCcH--------HHHHHHHHCC--
Confidence            344455677889999999999999999999999886 45455 88999999999999999        9999999999  


Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCcc
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGAR  163 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  163 (227)
                      ++++..+..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||.|+..+. +.+++|+ .+++++ .++..|+|
T Consensus       181 ~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in-~~d~~G~T  256 (434)
T PHA02874        181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASIN-DQDIDGST  256 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCC-CcCCCCCC
Confidence            88899999999999999999999999999999998 68899999999999998775 5666666 578888 89999999


Q ss_pred             HHHHHHHhC-cHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          164 VLLLLIAAN-LYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       164 ~L~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |||+|+..+ +.+++++|++. +++.+.+|..|.|||++|+++.
T Consensus       257 pLh~A~~~~~~~~iv~~Ll~~-gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        257 PLHHAINPPCDIDIIDILLYH-KADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHHHHhcCCcHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHhC
Confidence            999999875 78999999977 6667899999999999998755

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=201.16  Aligned_cols=171  Identities=13%  Similarity=0.069  Sum_probs=151.6

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      ++.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  ++++.++..|
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~Ga-dvn~~-d~~G~TpLh~Aa~~g~~--------eivk~Ll~~g--adin~~~~~g  127 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFSGM-DDSQF-DDKGNTALYYAVDSGNM--------QTVKLFVKKN--WRLMFYGKTG  127 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHCC--CCcCccCCCC
Confidence            47899999999999999999998876 44455 88999999999999999        9999999999  8888888877


Q ss_pred             -CcHHHHHHhcCCHHHHHHHHHcCCCccccCC-CCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccH-HHHHHH
Q 027136           94 -YTALFLCAGKGNLRALKVLVKCNPNLTNIRG-GLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARV-LLLLIA  170 (227)
Q Consensus        94 -~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~a~~  170 (227)
                       .||||+|+..|+.+++++|++++++.   .+ ..|.||||+|+..|+.+++++|+++|++++ .++..|.|| ||+|+.
T Consensus       128 ~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n-~~d~~g~t~~L~~Aa~  203 (284)
T PHA02791        128 WKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAID  203 (284)
T ss_pred             CcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-cccCCCCChHHHHHHH
Confidence             58999999999999999999987652   23 358999999999999999999999999999 888899987 999999


Q ss_pred             hCcHHHHHHHHHhCCCCccccccccccHHHHH
Q 027136          171 ANLYDVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       171 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      .|+.++++.|++. +++.+.+|.+ .++|..+
T Consensus       204 ~~~~e~v~lLl~~-Ga~in~~~~~-~~~l~~~  233 (284)
T PHA02791        204 NKDLEMLQALFKY-DINIYSVNLE-NVLLDDA  233 (284)
T ss_pred             cCCHHHHHHHHHC-CCCCccCccc-CccCCCH
Confidence            9999999999976 6666888884 4777655

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=215.41  Aligned_cols=186  Identities=19%  Similarity=0.154  Sum_probs=157.4

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccc-----------------------
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVES-----------------------   67 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~-----------------------   67 (227)
                      .+..+.+|||.|+..|+.++++.|++.+. .++.+ +..|.||||+||..|+.+...                       
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~ga-dvn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~  110 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGH-NVNQP-DHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFN  110 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHH
Confidence            45568899999999999999999999886 55566 889999999999877653110                       


Q ss_pred             -------------------------------h--hHHHHHHHHHhcCCccccccCCCC-CCcHHHHHHhcCCHHHHHHHH
Q 027136           68 -------------------------------D--EATCLLDKLASKVDPQTLARQDEH-GYTALFLCAGKGNLRALKVLV  113 (227)
Q Consensus        68 -------------------------------~--~~~~~~~~Ll~~~~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~~Ll  113 (227)
                                                     +  ...+++++|++.|  ++++..+.. |.||||+|+..|+.+++++|+
T Consensus       111 ~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~g--adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        111 NRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG--ADINMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             cCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcC--CCCCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence                                           0  0124888889888  889988888 999999999999999999999


Q ss_pred             HcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHh-CcHHHHHHHHHhCCCCccccc
Q 027136          114 KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAA-NLYDVALDLLKLHPTIGRDSI  192 (227)
Q Consensus       114 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~  192 (227)
                      +++++ ++.++..|.||||+|+..++.+++++|++.|++++ .++..|.||||+|+.. ++.+++++|++. +.+.+.++
T Consensus       189 ~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in-~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-gadvn~~~  265 (477)
T PHA02878        189 SYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD-ARDKCGNTPLHISVGYCKDYDILKLLLEH-GVDVNAKS  265 (477)
T ss_pred             HCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHhcCCHHHHHHHHHc-CCCCCccC
Confidence            99999 79999999999999999999999999999999999 9999999999999975 689999999977 44445555


Q ss_pred             c-ccccHHHHHh
Q 027136          193 D-SRRIVLNKLA  203 (227)
Q Consensus       193 ~-~g~t~l~~a~  203 (227)
                      . .|.||||+|+
T Consensus       266 ~~~g~TpLh~A~  277 (477)
T PHA02878        266 YILGLTALHSSI  277 (477)
T ss_pred             CCCCCCHHHHHc
Confidence            4 6777777774

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3e-30  Score=214.85  Aligned_cols=187  Identities=14%  Similarity=0.083  Sum_probs=159.2

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHc--------------------------------------------
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTN--------------------------------------------   37 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~--------------------------------------------   37 (227)
                      ++.+.+.+..+..|.||||.|+..|+.+.++.++..                                            
T Consensus        57 l~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~  136 (477)
T PHA02878         57 LTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYI  136 (477)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHH
Confidence            344555566777899999999988777666555543                                            


Q ss_pred             --------------------CCcccccccCCC-CccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcH
Q 027136           38 --------------------HPDALTAKTVAP-GSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTA   96 (227)
Q Consensus        38 --------------------~~~~~~~~~~~~-g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~   96 (227)
                                          +. .++.. +.. |.||||+|+..|+.        +++++|++.+  ++++..+..|.||
T Consensus       137 ~~~~~~~~~~~~iv~~Ll~~ga-din~~-~~~~g~tpLh~A~~~~~~--------~iv~~Ll~~g--ad~n~~d~~g~tp  204 (477)
T PHA02878        137 DKKSKDDIIEAEITKLLLSYGA-DINMK-DRHKGNTALHYATENKDQ--------RLTELLLSYG--ANVNIPDKTNNSP  204 (477)
T ss_pred             hhccchhhHHHHHHHHHHHcCC-CCCcc-CCCCCCCHHHHHHhCCCH--------HHHHHHHHCC--CCCCCcCCCCCCH
Confidence                                21 22223 445 99999999999999        9999999999  8999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHc-CChHHHHHHHhhcCCCccccCC-CCccHHHHHHHhCcH
Q 027136           97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYK-GHKNTFQYLLEVTHGVDIYSGN-DGARVLLLLIAANLY  174 (227)
Q Consensus        97 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~a~~~~~~  174 (227)
                      ||+|+..++.+++++|++.+++ ++.+|..|.||||+|+.. ++.+++++|++.|++++ .++. .|.||||.|  .++.
T Consensus       205 Lh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn-~~~~~~g~TpLh~A--~~~~  280 (477)
T PHA02878        205 LHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN-AKSYILGLTALHSS--IKSE  280 (477)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC-ccCCCCCCCHHHHH--ccCH
Confidence            9999999999999999999999 799999999999999976 68999999999999999 6664 799999999  4668


Q ss_pred             HHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          175 DVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       175 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      +++++|++. +++.+..|..|.||||+|+..
T Consensus       281 ~~v~~Ll~~-gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        281 RKLKLLLEY-GADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             HHHHHHHHC-CCCCCCcCCCCCCHHHHHHHH
Confidence            899999976 677789999999999999874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6e-30  Score=213.52  Aligned_cols=187  Identities=16%  Similarity=0.105  Sum_probs=123.1

Q ss_pred             CCcCchhhhcccHHHHH-----HHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHH--HhcCccccchhHHHHHHHH
Q 027136            5 DDQGEDEYYVRYWPLYR-----MIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAI--VELLVDVESDEATCLLDKL   77 (227)
Q Consensus         5 ~~~~~~~~~~~~~~L~~-----a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~~~~~~~~~L   77 (227)
                      |...+.....+.+|||.     |+..|+.++++.|++.+.. ++.. +..|.||||+|+  ..|+.        +++++|
T Consensus        58 g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~-i~~~-d~~g~tpL~~A~~~~~~~~--------~iv~~L  127 (480)
T PHA03100         58 GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN-VNAP-DNNGITPLLYAISKKSNSY--------SIVEYL  127 (480)
T ss_pred             CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC-CCCC-CCCCCchhhHHHhcccChH--------HHHHHH
Confidence            33334444555666666     6666666666666666553 2333 556666666666  66666        667777


Q ss_pred             HhcCCccccccCCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCcc
Q 027136           78 ASKVDPQTLARQDEHGYTALFLCAGKG--NLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI  155 (227)
Q Consensus        78 l~~~~~~~~~~~~~~~~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  155 (227)
                      ++.+  ++++..+..|.||||+|+..+  +.+++++|++++++ ++.++..|.||||+|+..|+.+++++|++.|++++ 
T Consensus       128 l~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~-  203 (480)
T PHA03100        128 LDNG--ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN-  203 (480)
T ss_pred             HHcC--CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc-
Confidence            7666  666666666677777777666  66777777777666 46666667777777777777777777777776666 


Q ss_pred             ccCCCC------ccHHHHHHHhCc--HHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          156 YSGNDG------ARVLLLLIAANL--YDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       156 ~~~~~g------~t~L~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ..+..|      .||||.|+..++  .+++++|++. +.+.+.+|..|.||||+|+..+
T Consensus       204 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~g~TpL~~A~~~~  261 (480)
T PHA03100        204 AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GVPINIKDVYGFTPLHYAVYNN  261 (480)
T ss_pred             CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcC
Confidence            566666      667777777776  7777777755 4555677777888888887643

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=6.7e-30  Score=206.59  Aligned_cols=178  Identities=16%  Similarity=0.197  Sum_probs=161.9

Q ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC-CCCC
Q 027136           16 YWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD-EHGY   94 (227)
Q Consensus        16 ~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~   94 (227)
                      ...++.|++.|+++.++.+++.....++.. |.+|.|+||+|+.+++.        +++++|++++  +++|..+ ..+.
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~-D~~g~tlLHWAAiNNrl--------~v~r~li~~g--advn~~gG~l~s  113 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNP-DREGVTLLHWAAINNRL--------DVARYLISHG--ADVNAIGGVLGS  113 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCC-CcCCccceeHHHHcCcH--------HHHHHHHHcC--CCccccCCCCCC
Confidence            467899999999999999999854566566 88999999999999999        9999999999  9999887 5689


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      ||||+|+++|+..++++|+++|++ +..+|.+|.+|+|.|+..++.-++-+|+..+++++ .+|.+|+|||++|+..|..
T Consensus       114 tPLHWAar~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLmwAaykg~~  191 (600)
T KOG0509|consen  114 TPLHWAARNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLMWAAYKGFA  191 (600)
T ss_pred             CcchHHHHcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHHHHHHhccc
Confidence            999999999999999999999999 89999999999999999999999999999999999 9999999999999999997


Q ss_pred             HHHHHHHHhCCCCccccc-cccccHHHHHhhCCC
Q 027136          175 DVALDLLKLHPTIGRDSI-DSRRIVLNKLAQKPY  207 (227)
Q Consensus       175 ~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~  207 (227)
                      ..++.||.-++.. ..+| .+|.||||.|+..++
T Consensus       192 ~~v~~LL~f~a~~-~~~d~~~g~TpLHwa~~~gN  224 (600)
T KOG0509|consen  192 LFVRRLLKFGASL-LLTDDNHGNTPLHWAVVGGN  224 (600)
T ss_pred             HHHHHHHHhcccc-cccccccCCchHHHHHhcCC
Confidence            7788888665555 4555 899999999998663

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.9e-29  Score=208.18  Aligned_cols=190  Identities=11%  Similarity=0.033  Sum_probs=150.8

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhC---CHHHHHHHHHcCCcccccccCCCCccHHHHHHHhc-CccccchhHHHHHHHH
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKN---DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVEL-LVDVESDEATCLLDKL   77 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~-~~~~~~~~~~~~~~~L   77 (227)
                      ++.+.+.+..+..|.||||.|+..|   +.++++.|++.+. .++.+ +..|.||||+|+..+ ..        +++++|
T Consensus        34 l~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga-din~~-~~~g~TpLh~A~~~~~~~--------~iv~lL  103 (471)
T PHA03095         34 LAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA-DVNAP-ERCGFTPLHLYLYNATTL--------DVIKLL  103 (471)
T ss_pred             HHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCcH--------HHHHHH
Confidence            3455666777788899999999988   8899999998886 45566 778999999999999 47        899999


Q ss_pred             HhcCCccccccCCCCCCcHHHHHH--hcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcC--ChHHHHHHHhhcCCC
Q 027136           78 ASKVDPQTLARQDEHGYTALFLCA--GKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKG--HKNTFQYLLEVTHGV  153 (227)
Q Consensus        78 l~~~~~~~~~~~~~~~~t~L~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~  153 (227)
                      ++.+  ++++.++..|.||||+|+  ..++.+++++|++.+++ ++..+..|.||||+|+..+  ..+++++|++.|+++
T Consensus       104 l~~g--a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~  180 (471)
T PHA03095        104 IKAG--ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV  180 (471)
T ss_pred             HHcC--CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC
Confidence            9998  888889989999999998  55678899999999988 6888888999999887765  467888888888887


Q ss_pred             ccccCCCCccHHHHHHHh--CcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          154 DIYSGNDGARVLLLLIAA--NLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       154 ~~~~~~~g~t~L~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      + ..+..|+||||.++..  +..++++.|++. +.+.+.+|..|.||||+|+..+
T Consensus       181 ~-~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        181 Y-AVDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             c-ccCCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcC
Confidence            7 5577788888877764  556677777655 4555666777777777776644

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=3.8e-29  Score=212.57  Aligned_cols=183  Identities=11%  Similarity=0.026  Sum_probs=156.9

Q ss_pred             CcCchh-hhcccHHHHHHHH--hCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCC
Q 027136            6 DQGEDE-YYVRYWPLYRMIE--KNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVD   82 (227)
Q Consensus         6 ~~~~~~-~~~~~~~L~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~   82 (227)
                      .+.+.. +..|.||||.|+.  .++.++++.|++.+. .++.+ +..|.||||+|+..|+.      ..+++++|++.| 
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GA-DVN~k-D~~G~TPLH~Aa~~g~~------~~eIVklLLe~G-  237 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGV-NVNLQ-NNHLITPLHTYLITGNV------CASVIKKIIELG-  237 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHcCCC------CHHHHHHHHHcC-
Confidence            444555 6789999999864  467899999999886 56566 88999999999999942      017999999999 


Q ss_pred             ccccccCCCCCCcHHHHH-------------------------------------HhcCCHHHHHHHHHcCCCccccCCC
Q 027136           83 PQTLARQDEHGYTALFLC-------------------------------------AGKGNLRALKVLVKCNPNLTNIRGG  125 (227)
Q Consensus        83 ~~~~~~~~~~~~t~L~~a-------------------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~  125 (227)
                       ++++.++..|.||||.|                                     +..|+.+++++|+++|++ ++.+|.
T Consensus       238 -ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~  315 (764)
T PHA02716        238 -GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDS  315 (764)
T ss_pred             -CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCC
Confidence             99999999999999975                                     345778999999999999 799999


Q ss_pred             CCChHHHHHHH--cCChHHHHHHHhhcCCCccccCCCCccHHHHHHH--------------hCcHHHHHHHHHhCCCCcc
Q 027136          126 LDTLPIHEAAY--KGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIA--------------ANLYDVALDLLKLHPTIGR  189 (227)
Q Consensus       126 ~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~--------------~~~~~~~~~Ll~~~~~~~~  189 (227)
                      .|+||||+|+.  .++.+++++|++.|++++ .++..|+||||+|+.              .++.++++.|++. +++.+
T Consensus       316 ~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn  393 (764)
T PHA02716        316 AGRTCLHQYILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADIT  393 (764)
T ss_pred             CCCCHHHHHHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCC
Confidence            99999999764  467899999999999999 999999999999875              3678999999976 67778


Q ss_pred             ccccccccHHHH
Q 027136          190 DSIDSRRIVLNK  201 (227)
Q Consensus       190 ~~~~~g~t~l~~  201 (227)
                      .+|..|.||||.
T Consensus       394 ~kn~~G~TPLh~  405 (764)
T PHA02716        394 AVNCLGYTPLTS  405 (764)
T ss_pred             CcCCCCCChHHH
Confidence            999999999994

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=5.9e-29  Score=207.14  Aligned_cols=190  Identities=13%  Similarity=0.092  Sum_probs=135.2

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhC-CHHHHHHHHHcCCcccccccCCCCccHHHHHH--HhcCccccchhHHHHHHHHH
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKN-DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAI--VELLVDVESDEATCLLDKLA   78 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~~~~~~~~~Ll   78 (227)
                      ++.+.+.+..+..|.||||.|+..| ..++++.|++.+. .++.+ +..|.||||+|+  ..++.        +++++|+
T Consensus        70 l~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga-~in~~-~~~g~tpLh~a~~~~~~~~--------~iv~~Ll  139 (471)
T PHA03095         70 LEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA-DVNAK-DKVGRTPLHVYLSGFNINP--------KVIRLLL  139 (471)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHhhCCcCCH--------HHHHHHH
Confidence            3455555666667888888888888 4788888877776 44455 777888888888  33455        6666666


Q ss_pred             hcCCccccccCCCCCCcHHHHHHhc-------------------------------------CCHHHHHHHHHcCCCccc
Q 027136           79 SKVDPQTLARQDEHGYTALFLCAGK-------------------------------------GNLRALKVLVKCNPNLTN  121 (227)
Q Consensus        79 ~~~~~~~~~~~~~~~~t~L~~a~~~-------------------------------------~~~~~~~~Ll~~~~~~~~  121 (227)
                      +.+  ++++..+..|.||||+|+..                                     +..++++.|++.+++ ++
T Consensus       140 ~~g--ad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~  216 (471)
T PHA03095        140 RKG--ADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PA  216 (471)
T ss_pred             HcC--CCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-Cc
Confidence            666  55666666666666655543                                     334445555555555 45


Q ss_pred             cCCCCCChHHHHHHHcCCh--HHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHH
Q 027136          122 IRGGLDTLPIHEAAYKGHK--NTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVL  199 (227)
Q Consensus       122 ~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  199 (227)
                      .+|..|.||||+|+..++.  .+++.|+..|++++ .++..|+||||+|+..|+.+++++|++. +++.+.+|..|.|||
T Consensus       217 ~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din-~~d~~g~TpLh~A~~~~~~~~v~~LL~~-gad~n~~~~~g~tpl  294 (471)
T PHA03095        217 ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN-ARNRYGQTPLHYAAVFNNPRACRRLIAL-GADINAVSSDGNTPL  294 (471)
T ss_pred             ccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHH
Confidence            5666666666666666653  46677778888888 8889999999999999999999999976 667788999999999


Q ss_pred             HHHhhCC
Q 027136          200 NKLAQKP  206 (227)
Q Consensus       200 ~~a~~~~  206 (227)
                      ++|+..+
T Consensus       295 ~~A~~~~  301 (471)
T PHA03095        295 SLMVRNN  301 (471)
T ss_pred             HHHHHhC
Confidence            9998755

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=6.4e-29  Score=207.37  Aligned_cols=191  Identities=13%  Similarity=0.066  Sum_probs=162.6

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHh-----CCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhc---CccccchhHHHH
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEK-----NDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVEL---LVDVESDEATCL   73 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~-----g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~---~~~~~~~~~~~~   73 (227)
                      ++.|.+.+..+..|.||||.|+..     +..++++.|++.+. +++.+ +..|.||||+|+..+   +.        ++
T Consensus        58 l~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Ga-diN~~-d~~G~TpLh~a~~~~~~~~~--------~i  127 (489)
T PHA02798         58 INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGA-DINKK-NSDGETPLYCLLSNGYINNL--------EI  127 (489)
T ss_pred             HHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCC-CCCCC-CCCcCcHHHHHHHcCCcChH--------HH
Confidence            456666777778899999998753     67899999999887 56666 889999999999986   56        99


Q ss_pred             HHHHHhcCCccccccCCCCCCcHHHHHHhcCC---HHHHHHHHHcCCCccccC-CCCCChHHHHHHHc----CChHHHHH
Q 027136           74 LDKLASKVDPQTLARQDEHGYTALFLCAGKGN---LRALKVLVKCNPNLTNIR-GGLDTLPIHEAAYK----GHKNTFQY  145 (227)
Q Consensus        74 ~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~---~~~~~~Ll~~~~~~~~~~-~~~g~t~l~~a~~~----~~~~~~~~  145 (227)
                      +++|++.|  ++++..|..|.||||+|+..++   .+++++|++.|++ ++.. +..|.||||.++..    ++.+++++
T Consensus       128 v~~Ll~~G--advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad-in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~  204 (489)
T PHA02798        128 LLFMIENG--ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD-INTHNNKEKYDTLHCYFKYNIDRIDADILKL  204 (489)
T ss_pred             HHHHHHcC--CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC-cccccCcCCCcHHHHHHHhccccCCHHHHHH
Confidence            99999999  9999999999999999999887   9999999999998 5666 46789999988764    46888888


Q ss_pred             HHhhcCCCcc--------------------------------------ccCCCCccHHHHHHHhCcHHHHHHHHHhCCCC
Q 027136          146 LLEVTHGVDI--------------------------------------YSGNDGARVLLLLIAANLYDVALDLLKLHPTI  187 (227)
Q Consensus       146 Ll~~~~~~~~--------------------------------------~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~  187 (227)
                      |++.|++++.                                      .++..|+||||+|+..|+.+++++|++. +++
T Consensus       205 Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~-GAd  283 (489)
T PHA02798        205 FVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQL-GGD  283 (489)
T ss_pred             HHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHc-CCc
Confidence            8887764331                                      4677899999999999999999999987 666


Q ss_pred             ccccccccccHHHHHhhCC
Q 027136          188 GRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       188 ~~~~~~~g~t~l~~a~~~~  206 (227)
                      .+.+|..|.|||+.|+..+
T Consensus       284 in~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        284 INIITELGNTCLFTAFENE  302 (489)
T ss_pred             ccccCCCCCcHHHHHHHcC
Confidence            7899999999999999865

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=4.7e-28  Score=198.93  Aligned_cols=176  Identities=14%  Similarity=0.089  Sum_probs=154.9

Q ss_pred             ccHHHHHHHH--hCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCC
Q 027136           15 RYWPLYRMIE--KNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEH   92 (227)
Q Consensus        15 ~~~~L~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   92 (227)
                      ++++||.++.  .++.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.|  ++++.+|..
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Ga-dvn~~-d~~G~TpLh~Aa~~g~~--------eiv~lLL~~G--Adin~~d~~  104 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGY-SPNET-DDDGNYPLHIASKINNN--------RIVAMLLTHG--ADPNACDKQ  104 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcC-CCCcc-CCCCCCHHHHHHHcCCH--------HHHHHHHHCc--CCCCCCCCC
Confidence            4689998764  446789999999987 56566 88999999999999999        9999999999  999999999


Q ss_pred             CCcHHHHHHhcC--CHHHHHHHHHcCCCccc-cCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHH
Q 027136           93 GYTALFLCAGKG--NLRALKVLVKCNPNLTN-IRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        93 ~~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  169 (227)
                      |.||||+|+..+  ..+++++|++++++ ++ ..+..|.|||| |+..++.+++++|++.|++++ .++..|+||||.|+
T Consensus       105 g~TpLh~A~~~~~~~~e~v~lLl~~Gad-in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t~Lh~A~  181 (446)
T PHA02946        105 HKTPLYYLSGTDDEVIERINLLVQYGAK-INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKNHIHRHL  181 (446)
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCC-cccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCCHHHHHH
Confidence            999999998765  48999999999999 45 47899999997 667799999999999999999 99999999999988


Q ss_pred             HhCc--HHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          170 AANL--YDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       170 ~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ..++  .+++++|++. +++.+.+|..|.||||+|+..+
T Consensus       182 ~~~~~~~~~v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        182 MSDNPKASTISWMMKL-GISPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             HhcCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcC
Confidence            7654  6899999977 6677899999999999999854

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.3e-28  Score=209.89  Aligned_cols=181  Identities=14%  Similarity=0.026  Sum_probs=127.7

Q ss_pred             hhhcccHHHHHHHHhC-CHHHHHHHHHcCCcccccccCCCCccHHHHHHHhc-CccccchhHHHHHHHHHhcCCcccccc
Q 027136           11 EYYVRYWPLYRMIEKN-DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVEL-LVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g-~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~-~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      .+..|.||||.|+..| +.+.++.|+..+. .++.. +..|.||||+|+..+ +.        ++++.|++.+  ++++.
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~ga-din~~-d~~g~TpLh~A~~~~~~~--------~iv~lLl~~g--adin~  370 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGA-DVNAA-DRLYITPLHQASTLDRNK--------DIVITLLELG--ANVNA  370 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCC-CCCCc-ccCCCcHHHHHHHhCCcH--------HHHHHHHHcC--CCCcc
Confidence            3444555555555554 3444444444443 22233 445555555555533 33        6677777777  77777


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCC-hHHHHHHHhhcCCCccccCCCCccHHHH
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGH-KNTFQYLLEVTHGVDIYSGNDGARVLLL  167 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  167 (227)
                      +|..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+..+. ..++++|++.|++++ .++..|+||||+
T Consensus       371 ~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin-~~d~~G~TpLh~  448 (682)
T PHA02876        371 RDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN-SKNKDLSTPLHY  448 (682)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC-cCCCCCChHHHH
Confidence            788888888888888888888888888887 57777788888888876655 456788888888888 888899999999


Q ss_pred             HHHhC-cHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          168 LIAAN-LYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       168 a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |+..+ +.+++++|++. +++.+.+|..|.||+++|+.+.
T Consensus       449 Aa~~~~~~~iv~lLl~~-Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        449 ACKKNCKLDVIEMLLDN-GADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             HHHhCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhC
Confidence            98866 57889988876 5666788999999999887643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=3.7e-28  Score=206.56  Aligned_cols=168  Identities=14%  Similarity=0.090  Sum_probs=142.4

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhCC--HHHHHHHHHcCCcccccccCCCCccHHHHHHH--------------------
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKND--WRGVEDFVTNHPDALTAKTVAPGSSTIFHAIV--------------------   59 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g~--~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~--------------------   59 (227)
                      ++.+.+.+..+..|.||||.|+..|+  .++++.|++.+. .++.+ +..|.||||+|+.                    
T Consensus       199 Le~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA-DVN~k-D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n  276 (764)
T PHA02716        199 CNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGG-DMDMK-CVNGMSPIMTYIINIDNINPEITNIYIESLDGN  276 (764)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHhhhccCHHHHHHHHHhcccc
Confidence            45566677788899999999999995  489999999987 56667 8899999998643                    


Q ss_pred             -----------------hcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHh--cCCHHHHHHHHHcCCCcc
Q 027136           60 -----------------ELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAG--KGNLRALKVLVKCNPNLT  120 (227)
Q Consensus        60 -----------------~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~--~~~~~~~~~Ll~~~~~~~  120 (227)
                                       .|+.        +++++|++.+  ++++.+|..|+||||+|+.  .++.+++++|++.|++ +
T Consensus       277 ~~~~~~~~L~~~i~AA~~g~l--------eiVklLLe~G--AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-I  345 (764)
T PHA02716        277 KVKNIPMILHSYITLARNIDI--------SVVYSFLQPG--VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-L  345 (764)
T ss_pred             ccccchhhhHHHHHHHHcCCH--------HHHHHHHhCC--CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-C
Confidence                             2334        8899999999  8899999999999999864  4688999999999999 7


Q ss_pred             ccCCCCCChHHHHHHH--------------cCChHHHHHHHhhcCCCccccCCCCccHHHHH----HHhCcHHHHHHHHH
Q 027136          121 NIRGGLDTLPIHEAAY--------------KGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL----IAANLYDVALDLLK  182 (227)
Q Consensus       121 ~~~~~~g~t~l~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a----~~~~~~~~~~~Ll~  182 (227)
                      +.+|..|+||||+|+.              .++.+++++|++.|++++ .++..|+||||.+    ...++.+++++|++
T Consensus       346 N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn-~kn~~G~TPLh~y~~~a~n~~~~dIvklLis  424 (764)
T PHA02716        346 NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT-AVNCLGYTPLTSYICTAQNYMYYDIIDCLIS  424 (764)
T ss_pred             ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCC-CcCCCCCChHHHHHHHHHhcChHHHHHHHHh
Confidence            9999999999999875              367899999999999999 9999999999942    23466888888877


Q ss_pred             h
Q 027136          183 L  183 (227)
Q Consensus       183 ~  183 (227)
                      .
T Consensus       425 ~  425 (764)
T PHA02716        425 D  425 (764)
T ss_pred             C
Confidence            4

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1e-28  Score=204.07  Aligned_cols=195  Identities=17%  Similarity=0.138  Sum_probs=161.4

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCC----cccccccCCCCccHHHHHHHhcCccccchhHHHHHHHH
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHP----DALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKL   77 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~----~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~L   77 (227)
                      |+.+..-...+..|+.|+|.|++.|..++.+.++.+.+    ..++.. +..+.+|||.|+..|+.        ++++..
T Consensus       174 i~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~-~n~~~~pLhlAve~g~~--------e~lk~~  244 (929)
T KOG0510|consen  174 INKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFD-NNEKATPLHLAVEGGDI--------EMLKMC  244 (929)
T ss_pred             HhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccc-cCCCCcchhhhhhcCCH--------HHHHHH
Confidence            34444545556778888888888888888888887432    133333 67788999999999999        999999


Q ss_pred             HhcCCccc-------------cccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHH
Q 027136           78 ASKVDPQT-------------LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQ  144 (227)
Q Consensus        78 l~~~~~~~-------------~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  144 (227)
                      ++.+....             ++..|.+|.||||+|++.|+.++++.|+..|++ ++.++.++.||||.|+++|+..+++
T Consensus       245 L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~  323 (929)
T KOG0510|consen  245 LQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVE  323 (929)
T ss_pred             HhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHH
Confidence            88762211             566789999999999999999999999999999 7999999999999999999999999


Q ss_pred             HHHh-hcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCcc--ccccccccHHHHHhhCC
Q 027136          145 YLLE-VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGR--DSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       145 ~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~t~l~~a~~~~  206 (227)
                      .|++ .+...-+..+-.|.||||+|+++|+..+++.|++++....+  ..|.+|.||||.|+.++
T Consensus       324 rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g  388 (929)
T KOG0510|consen  324 RLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYG  388 (929)
T ss_pred             HHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhc
Confidence            9998 55444348899999999999999999999999988665544  34999999999999877

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=206.61  Aligned_cols=187  Identities=15%  Similarity=0.075  Sum_probs=163.1

Q ss_pred             CCcCchhhhcccHHHHHHHHhCCHH-HHHHHHHcCCcccccccCCCCccHHHHHHHhc-CccccchhHHHHHHHHHhcCC
Q 027136            5 DDQGEDEYYVRYWPLYRMIEKNDWR-GVEDFVTNHPDALTAKTVAPGSSTIFHAIVEL-LVDVESDEATCLLDKLASKVD   82 (227)
Q Consensus         5 ~~~~~~~~~~~~~~L~~a~~~g~~~-~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~-~~~~~~~~~~~~~~~Ll~~~~   82 (227)
                      +...+..+..|.||||.|+..|+.. +++.|++.+. .++.+ +..|.||||+|+..| ..        +++++|+..+ 
T Consensus       263 g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~ga-din~~-d~~g~TpLh~Aa~~g~~~--------~~v~~Ll~~g-  331 (682)
T PHA02876        263 GFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGA-DVNAK-NIKGETPLYLMAKNGYDT--------ENIRTLIMLG-  331 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCC-CCCCc-CCCCCCHHHHHHHhCCCH--------HHHHHHHHcC-
Confidence            3344555667999999999999974 6777777765 55566 889999999999999 47        8999999999 


Q ss_pred             ccccccCCCCCCcHHHHHHhc-CCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCC
Q 027136           83 PQTLARQDEHGYTALFLCAGK-GNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDG  161 (227)
Q Consensus        83 ~~~~~~~~~~~~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  161 (227)
                       ++++..+..|.||||+|+.. +..+++++|++.+++ ++.+|..|.||||+|+..++.+++++|++.|++++ ..+..|
T Consensus       332 -adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~-~~~~~g  408 (682)
T PHA02876        332 -ADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE-ALSQKI  408 (682)
T ss_pred             -CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-ccCCCC
Confidence             89999999999999999985 578999999999999 79999999999999999999999999999999999 899999


Q ss_pred             ccHHHHHHHhCc-HHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          162 ARVLLLLIAANL-YDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       162 ~t~L~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      .||||+|+..+. ..+++.|++. +.+.+.+|..|+||||+|+..+
T Consensus       409 ~T~Lh~A~~~~~~~~~vk~Ll~~-gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        409 GTALHFALCGTNPYMSVKTLIDR-GANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             CchHHHHHHcCCHHHHHHHHHhC-CCCCCcCCCCCChHHHHHHHhC
Confidence            999999987665 5678888866 6677899999999999999754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-28  Score=192.24  Aligned_cols=179  Identities=20%  Similarity=0.158  Sum_probs=160.6

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCc--------ccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPD--------ALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~--------~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      ..|.|||..|++.|+.+++++++++...        .++.. ...|.+||..|+..|+.        ++|+.|++.+  +
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge-~IegappLWaAsaAGHl--------~vVk~L~~~g--a  108 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGE-TIEGAPPLWAASAAGHL--------EVVKLLLRRG--A  108 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCc-ccCCCchhhHHhccCcH--------HHHHHHHHhc--C
Confidence            3477999999999999999999995321        22222 46788999999999999        9999999999  8


Q ss_pred             ccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccH
Q 027136           85 TLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARV  164 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  164 (227)
                      ++|.......|||-.||.-|+.+++++|++++++ +++.|+.|.|-|++|+..|+.+++++|++.|++++ .++..|+|+
T Consensus       109 ~VN~tT~TNStPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~ks~kGNTA  186 (615)
T KOG0508|consen  109 SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AKSYKGNTA  186 (615)
T ss_pred             ccccccccCCccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hhcccCchH
Confidence            9998888888999999999999999999999999 79999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          165 LLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       165 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ||.++..|+.++++.|+..+..+  .+|..|.|||-.|+..+
T Consensus       187 LH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG  226 (615)
T KOG0508|consen  187 LHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTG  226 (615)
T ss_pred             HHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhc
Confidence            99999999999999999664443  67888999999998844

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.8e-27  Score=197.80  Aligned_cols=189  Identities=16%  Similarity=0.114  Sum_probs=130.8

Q ss_pred             CCCCcCchhhhcccHHHHHHHH------hCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHh---cCccccchhHHHH
Q 027136            3 NSDDQGEDEYYVRYWPLYRMIE------KNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVE---LLVDVESDEATCL   73 (227)
Q Consensus         3 ~~~~~~~~~~~~~~~~L~~a~~------~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~~~~~~   73 (227)
                      +.|.+.+... .+.||||.|+.      .+..++++.|++.|. +++.+ +..|.||||.|+..   ++.        ++
T Consensus        58 ~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Ga-din~~-d~~g~tpL~~a~~~~~~~~~--------ei  126 (494)
T PHA02989         58 DNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGA-DINLK-TFNGVSPIVCFIYNSNINNC--------DM  126 (494)
T ss_pred             HcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCC-CCCCC-CCCCCcHHHHHHHhcccCcH--------HH
Confidence            3444444333 35677776654      356667777776665 34445 66677777766554   345        67


Q ss_pred             HHHHHhcCCcccc-ccCCCCCCcHHHHHHhc--CCHHHHHHHHHcCCCcccc-CCCCCChHHHHHHHcC----ChHHHHH
Q 027136           74 LDKLASKVDPQTL-ARQDEHGYTALFLCAGK--GNLRALKVLVKCNPNLTNI-RGGLDTLPIHEAAYKG----HKNTFQY  145 (227)
Q Consensus        74 ~~~Ll~~~~~~~~-~~~~~~~~t~L~~a~~~--~~~~~~~~Ll~~~~~~~~~-~~~~g~t~l~~a~~~~----~~~~~~~  145 (227)
                      +++|++.|  +++ +..+..|.||||+|+..  ++.+++++|+++|++ ++. .+..|.||||+|+..+    +.+++++
T Consensus       127 v~~Ll~~G--adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~  203 (494)
T PHA02989        127 LRFLLSKG--INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDIDVISIKVIKY  203 (494)
T ss_pred             HHHHHHCC--CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhcccccccHHHHHH
Confidence            77777777  666 56666777777776543  466777777777776 344 4666777777765543    5667777


Q ss_pred             HHhhcCCCc-------------------------------------cccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCc
Q 027136          146 LLEVTHGVD-------------------------------------IYSGNDGARVLLLLIAANLYDVALDLLKLHPTIG  188 (227)
Q Consensus       146 Ll~~~~~~~-------------------------------------~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~  188 (227)
                      |++.|++++                                     +.++..|+||||+|+..++.+++++|++. +++.
T Consensus       204 Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~-Gadi  282 (494)
T PHA02989        204 LIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL-GDDI  282 (494)
T ss_pred             HHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc-CCCc
Confidence            766665533                                     05567799999999999999999999977 6677


Q ss_pred             cccccccccHHHHHhhCC
Q 027136          189 RDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       189 ~~~~~~g~t~l~~a~~~~  206 (227)
                      +.+|..|.||||+|+..+
T Consensus       283 n~~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        283 YNVSKDGDTVLTYAIKHG  300 (494)
T ss_pred             cccCCCCCCHHHHHHHcC
Confidence            899999999999999865

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=3.7e-27  Score=194.94  Aligned_cols=185  Identities=16%  Similarity=0.130  Sum_probs=140.1

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHh-----cCCc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLAS-----KVDP   83 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~-----~~~~   83 (227)
                      +.+...|.||||.|+..++.+..+.|++.+. .+... +..|..|+|.|++.|..        ++.+.++.     ..  
T Consensus       148 nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a-~~~K~-~~~~~~~iH~aa~s~s~--------e~mEi~l~~~g~~r~--  215 (929)
T KOG0510|consen  148 NLEDENGFTPLHLAARKNKVEAKKELINKGA-DPCKS-DIDGNFPIHEAARSGSK--------ECMEIFLPEHGYERQ--  215 (929)
T ss_pred             cccccCCCchhhHHHhcChHHHHHHHHhcCC-CCCcc-cCcCCchHHHHHHhcch--------hhhhhhhccccchhh--
Confidence            3444556677777777777775566666654 33233 67777777777777777        77777776     33  


Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCc--------------cccCCCCCChHHHHHHHcCChHHHHHHHhh
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNL--------------TNIRGGLDTLPIHEAAYKGHKNTFQYLLEV  149 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~--------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  149 (227)
                      ..++..+..+.+|||.|+..|+.++++..++.+...              ++..|+.|.||||+|++.|+.+.++.|+..
T Consensus       216 ~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~  295 (929)
T KOG0510|consen  216 THINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF  295 (929)
T ss_pred             cccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc
Confidence            456777777788888888888888888888774432              355788888999999999999999999988


Q ss_pred             cCCCccccCCCCccHHHHHHHhCcHHHHHHHHH-hCCCCccccccccccHHHHHhhCC
Q 027136          150 THGVDIYSGNDGARVLLLLIAANLYDVALDLLK-LHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       150 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |++++ .++.++.||||.|+..|+...++.||+ .+..+.+..|-.|.||||+|++.+
T Consensus       296 Ga~I~-~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g  352 (929)
T KOG0510|consen  296 GASIN-SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG  352 (929)
T ss_pred             CCccc-ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC
Confidence            88888 888888999999999888888888888 455677777888899999888633

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.8e-26  Score=196.61  Aligned_cols=189  Identities=13%  Similarity=0.026  Sum_probs=123.9

Q ss_pred             CCcCchhhhcccHHHHHHHHh---CCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC
Q 027136            5 DDQGEDEYYVRYWPLYRMIEK---NDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV   81 (227)
Q Consensus         5 ~~~~~~~~~~~~~~L~~a~~~---g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~   81 (227)
                      +...+..+..|.||||.|+..   |+.++++.|++.+. .++.+ +..|.||||+|+..|+.++..    ++++.|++.+
T Consensus        22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga-~v~~~-~~~g~TpL~~Aa~~g~~~v~~----~~~~~Ll~~~   95 (661)
T PHA02917         22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGT-NPLHK-NWRQLTPLEEYTNSRHVKVNK----DIAMALLEAT   95 (661)
T ss_pred             cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCC-Ccccc-CCCCCCHHHHHHHcCChhHHH----HHHHHHHhcc
Confidence            333455577899999997555   88999999999887 44566 889999999999999863221    3455666554


Q ss_pred             CccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHH--HcCChHHHHHHHhhcCCCccccCC
Q 027136           82 DPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAA--YKGHKNTFQYLLEVTHGVDIYSGN  159 (227)
Q Consensus        82 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~  159 (227)
                        ...+..+.  .+++++|+..++.+++++|+++|++ ++.+|..|.||||.++  ..|+.+++++|+++|++++ .++.
T Consensus        96 --~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~  169 (661)
T PHA02917         96 --GYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDE  169 (661)
T ss_pred             --CCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-cccc
Confidence              11222221  2455666666777777777777776 5667777777776432  3566777777777777665 3322


Q ss_pred             ---CC-----------ccHHHHHHH-----------hCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          160 ---DG-----------ARVLLLLIA-----------ANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       160 ---~g-----------~t~L~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                         .|           .||||+|+.           .++.+++++|++. +++.+.+|..|.||||+|+..+
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~TpLh~A~~~g  240 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYCTALQYYIKSS  240 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCCcHHHHHHHcC
Confidence               22           477777654           2456677777755 4555666777777777776644

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.2e-26  Score=190.69  Aligned_cols=174  Identities=12%  Similarity=0.080  Sum_probs=140.3

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhC--CHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHh
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKN--DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLAS   79 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~   79 (227)
                      ++.|.+.+.. ..|.++|+.++..+  +.++++.|++.|. +++.+ + .+.||||.|+..+..  ......+++++|++
T Consensus        23 L~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GA-dvn~~-~-~~~tpL~~a~~~~~~--~~~~~~~iv~~Ll~   96 (494)
T PHA02989         23 LRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGA-DVNYK-G-YIETPLCAVLRNREI--TSNKIKKIVKLLLK   96 (494)
T ss_pred             HHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCC-CccCC-C-CCCCcHHHHHhccCc--chhhHHHHHHHHHH
Confidence            3455555555 56889987766543  6899999999987 45444 3 568999998876542  11112389999999


Q ss_pred             cCCccccccCCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCcc-ccCCCCCChHHHHHHHc--CChHHHHHHHhhcCCC
Q 027136           80 KVDPQTLARQDEHGYTALFLCAGK---GNLRALKVLVKCNPNLT-NIRGGLDTLPIHEAAYK--GHKNTFQYLLEVTHGV  153 (227)
Q Consensus        80 ~~~~~~~~~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~  153 (227)
                      .|  ++++.++..|.||||.|+..   ++.+++++|+++|++ + +.++..|.||||+|+..  ++.+++++|++.|+++
T Consensus        97 ~G--adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad-in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi  173 (494)
T PHA02989         97 FG--ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN-VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNL  173 (494)
T ss_pred             CC--CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC-cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            99  99999999999999988754   689999999999999 6 78999999999998764  5789999999999999


Q ss_pred             ccc-cCCCCccHHHHHHHhC----cHHHHHHHHHhCC
Q 027136          154 DIY-SGNDGARVLLLLIAAN----LYDVALDLLKLHP  185 (227)
Q Consensus       154 ~~~-~~~~g~t~L~~a~~~~----~~~~~~~Ll~~~~  185 (227)
                      + . .+..|.||||+|++.+    +.+++++|++++.
T Consensus       174 ~-~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga  209 (494)
T PHA02989        174 F-EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV  209 (494)
T ss_pred             c-ccccccCCChHHHHHhcccccccHHHHHHHHhCCC
Confidence            8 5 6789999999998764    7899999998744

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=4.4e-26  Score=200.22  Aligned_cols=175  Identities=13%  Similarity=0.041  Sum_probs=157.9

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCC
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEH   92 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   92 (227)
                      ..+.++|+.|+..|+.+.++.+++.+. +++.. +..|+||||+|+..|+.        +++++|++.+  ++++.+|..
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~-d~n~~-d~~G~TpLh~Aa~~g~~--------~~v~~Ll~~g--adin~~d~~  590 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKL-DPDIG-DSKGRTPLHIAASKGYE--------DCVLVLLKHA--CNVHIRDAN  590 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcChH--------HHHHHHHhcC--CCCCCcCCC
Confidence            346799999999999999999999886 45566 88999999999999999        9999999999  889999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhC
Q 027136           93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAAN  172 (227)
Q Consensus        93 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~  172 (227)
                      |+||||+|+..|+.+++++|+..+.. .  ....+.++||.|+..|+.+++++|++.|++++ .++..|+||||+|+..|
T Consensus       591 G~TpL~~A~~~g~~~iv~~L~~~~~~-~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin-~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        591 GNTALWNAISAKHHKIFRILYHFASI-S--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD-SEDHQGATALQVAMAED  666 (823)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCcc-c--CcccCchHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCC
Confidence            99999999999999999999987764 2  34567899999999999999999999999999 99999999999999999


Q ss_pred             cHHHHHHHHHhCCCCcccccccc-ccHHHHHhh
Q 027136          173 LYDVALDLLKLHPTIGRDSIDSR-RIVLNKLAQ  204 (227)
Q Consensus       173 ~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a~~  204 (227)
                      +.+++++|++. +++.+..|..| .||++++..
T Consensus       667 ~~~iv~~Ll~~-GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        667 HVDMVRLLIMN-GADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             cHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence            99999999977 66667888877 999988753

>PHA02798 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.4e-25  Score=187.29  Aligned_cols=180  Identities=11%  Similarity=0.051  Sum_probs=150.6

Q ss_pred             hcccHHHHHHHH--hCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHh-----cCccccchhHHHHHHHHHhcCCccc
Q 027136           13 YVRYWPLYRMIE--KNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVE-----LLVDVESDEATCLLDKLASKVDPQT   85 (227)
Q Consensus        13 ~~~~~~L~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~-----~~~~~~~~~~~~~~~~Ll~~~~~~~   85 (227)
                      ..+.++++.+..  .++.++++.|++.|. .++.+ +..|.||||.|+..     +..        +++++|++.|  ++
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Ga-dvn~~-d~~g~TpL~~~~~n~~~~~~~~--------~iv~~Ll~~G--ad  101 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGA-NVNGL-DNEYSTPLCTILSNIKDYKHML--------DIVKILIENG--AD  101 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCC-CCCCC-CCCCCChHHHHHHhHHhHHhHH--------HHHHHHHHCC--CC
Confidence            346677664443  447899999999987 56566 88999999998864     556        9999999999  99


Q ss_pred             cccCCCCCCcHHHHHHhcC---CHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCC---hHHHHHHHhhcCCCcccc-C
Q 027136           86 LARQDEHGYTALFLCAGKG---NLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGH---KNTFQYLLEVTHGVDIYS-G  158 (227)
Q Consensus        86 ~~~~~~~~~t~L~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~-~  158 (227)
                      ++.++..|.||||+|+..+   +.+++++|+++|++ ++.+|..|.||||+|+..++   .+++++|++.|++++ .. +
T Consensus       102 iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin-~~~~  179 (489)
T PHA02798        102 INKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN-THNN  179 (489)
T ss_pred             CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc-cccC
Confidence            9999999999999999875   78999999999999 79999999999999999987   999999999999998 55 5


Q ss_pred             CCCccHHHHHHHh----CcHHHHHHHHHhCC--------------------------------------CCccccccccc
Q 027136          159 NDGARVLLLLIAA----NLYDVALDLLKLHP--------------------------------------TIGRDSIDSRR  196 (227)
Q Consensus       159 ~~g~t~L~~a~~~----~~~~~~~~Ll~~~~--------------------------------------~~~~~~~~~g~  196 (227)
                      ..|.||||.++..    ++.+++++|++.+.                                      .+.+.+|..|+
T Consensus       180 ~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~  259 (489)
T PHA02798        180 KEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGF  259 (489)
T ss_pred             cCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCc
Confidence            6789999988764    36888888886642                                      13345677899


Q ss_pred             cHHHHHhhCC
Q 027136          197 IVLNKLAQKP  206 (227)
Q Consensus       197 t~l~~a~~~~  206 (227)
                      ||||+|+..+
T Consensus       260 TPL~~A~~~~  269 (489)
T PHA02798        260 NPLYYSVSHN  269 (489)
T ss_pred             cHHHHHHHcC
Confidence            9999999754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.8e-25  Score=178.09  Aligned_cols=173  Identities=9%  Similarity=0.006  Sum_probs=151.1

Q ss_pred             HHHHhCCHHHHHHHHHcCCccc-----ccccCCCCccHHHHHHH--hcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           21 RMIEKNDWRGVEDFVTNHPDAL-----TAKTVAPGSSTIFHAIV--ELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        21 ~a~~~g~~~~v~~ll~~~~~~~-----~~~~~~~g~t~L~~a~~--~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      +|+..+..++++.|++++....     ..+ +.+++|+||.++.  .|+.        +++++|+++|  ++++..+  +
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~-~~~~~~~L~~~~~n~~n~~--------eiV~~LI~~G--ADIn~~~--~  149 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKN-CNSVQDLLLYYLSNAYVEI--------DIVDFMVDHG--AVIYKIE--C  149 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhc-cccccHHHHHHHHhcCCCH--------HHHHHHHHCC--CCCCCCC--C
Confidence            8889999999999999987422     134 7789999999999  7888        9999999999  8887744  4


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccC-----CCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIR-----GGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~-----~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                      .||+|.|+..++.+++++|+.+|++..+..     +..+.+++|.|...++.+++++|+++|++++ .++..|.||||+|
T Consensus       150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN-~kD~~G~TpLh~A  228 (437)
T PHA02795        150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN-QLDAGGRTLLYRA  228 (437)
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC-cCCCCCCCHHHHH
Confidence            899999999999999999999997533332     1347789999999999999999999999999 9999999999999


Q ss_pred             HHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCCCc
Q 027136          169 IAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYA  208 (227)
Q Consensus       169 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  208 (227)
                      +..|+.+++++|++. +++.+.+|..|.||||+|+.+++.
T Consensus       229 a~~g~~eiVelLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~  267 (437)
T PHA02795        229 IYAGYIDLVSWLLEN-GANVNAVMSNGYTCLDVAVDRGSV  267 (437)
T ss_pred             HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCc
Confidence            999999999999977 667789999999999999998753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.2e-25  Score=165.12  Aligned_cols=150  Identities=15%  Similarity=0.189  Sum_probs=131.3

Q ss_pred             hhhhcccHHHHHHHHhC--CHHHHHHHHHcCCcccccccCCCCccHHHHHHHh---cCccccchhHHHHHHHHHhcCCcc
Q 027136           10 DEYYVRYWPLYRMIEKN--DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVE---LLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      ..+..|.||||.|+..+  +.++++.|++.+. .++.+.+..|.||||+|+..   ++.        +++++|++.+  +
T Consensus        46 ~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ga-dvn~~~~~~g~TpLh~a~~~~~~~~~--------eiv~~Ll~~g--a  114 (209)
T PHA02859         46 DCNDLYETPIFSCLEKDKVNVEILKFLIENGA-DVNFKTRDNNLSALHHYLSFNKNVEP--------EILKILIDSG--S  114 (209)
T ss_pred             ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCC-CCCccCCCCCCCHHHHHHHhCccccH--------HHHHHHHHCC--C
Confidence            45667999999999854  8999999999987 44455235799999998864   367        9999999999  9


Q ss_pred             ccccCCCCCCcHHHHHHh--cCCHHHHHHHHHcCCCccccCCCCCChHHHH-HHHcCChHHHHHHHhhcCCCccccCCCC
Q 027136           85 TLARQDEHGYTALFLCAG--KGNLRALKVLVKCNPNLTNIRGGLDTLPIHE-AAYKGHKNTFQYLLEVTHGVDIYSGNDG  161 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  161 (227)
                      +++.+|..|.||||+|+.  .++.+++++|++.+++ ++.+|..|.||||. ++..++.+++++|++.|++++ .++..|
T Consensus       115 din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~-~~d~~g  192 (209)
T PHA02859        115 SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN-ETNKSG  192 (209)
T ss_pred             CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC-CCCCCC
Confidence            999999999999999876  4689999999999999 79999999999996 566789999999999999999 999999


Q ss_pred             ccHHHHHHHhC
Q 027136          162 ARVLLLLIAAN  172 (227)
Q Consensus       162 ~t~L~~a~~~~  172 (227)
                      +|||++|...+
T Consensus       193 ~tpl~la~~~~  203 (209)
T PHA02859        193 YNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHhhhh
Confidence            99999998765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=1e-24  Score=174.94  Aligned_cols=161  Identities=15%  Similarity=0.057  Sum_probs=140.3

Q ss_pred             hhhcccHHHHHHHH--hCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc-c
Q 027136           11 EYYVRYWPLYRMIE--KNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL-A   87 (227)
Q Consensus        11 ~~~~~~~~L~~a~~--~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~-~   87 (227)
                      +...++|+||.++.  .|+.++++.|+++|.. ++.   .++.||+|.|+..++.        +++++|++.|  ++. +
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD-In~---~~~~t~lh~A~~~~~~--------eIVk~Lls~G--a~~~n  177 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV-IYK---IECLNAYFRGICKKES--------SVVEFILNCG--IPDEN  177 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCC-CCC---CCCCCHHHHHHHcCcH--------HHHHHHHhcC--Ccccc
Confidence            33458899999999  9999999999999984 322   3558999999999999        9999999999  422 2


Q ss_pred             cC-----CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCc
Q 027136           88 RQ-----DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGA  162 (227)
Q Consensus        88 ~~-----~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  162 (227)
                      ..     +..+.+++|.|+..+..+++++|+.+|++ ++.+|..|.||||+|+..|+.+++++|++.|++++ .++..|.
T Consensus       178 ~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN-~~d~~G~  255 (437)
T PHA02795        178 DVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN-AVMSNGY  255 (437)
T ss_pred             cccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCC
Confidence            22     13467899999999999999999999999 79999999999999999999999999999999999 9999999


Q ss_pred             cHHHHHHHhC--------cHHHHHHHHHhCCCC
Q 027136          163 RVLLLLIAAN--------LYDVALDLLKLHPTI  187 (227)
Q Consensus       163 t~L~~a~~~~--------~~~~~~~Ll~~~~~~  187 (227)
                      ||||+|+..|        +.++++.|+++++..
T Consensus       256 TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        256 TCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            9999999988        468999999775543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=4.9e-25  Score=191.56  Aligned_cols=187  Identities=19%  Similarity=0.155  Sum_probs=150.0

Q ss_pred             CcCchhhhcccHHHHHHHHhCC-HHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc
Q 027136            6 DQGEDEYYVRYWPLYRMIEKND-WRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus         6 ~~~~~~~~~~~~~L~~a~~~g~-~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      ...+.....|+|++|.|++.|+ .+....+++.+. .++.. ...|.||||+|+..|+.        ++++.|++.+  +
T Consensus       431 A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~-~~n~~-s~~G~T~Lhlaaq~Gh~--------~~~~llle~~--~  498 (1143)
T KOG4177|consen  431 ASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGA-DPNAV-SKQGFTPLHLAAQEGHT--------EVVQLLLEGG--A  498 (1143)
T ss_pred             CChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCC-Ccchh-ccccCcchhhhhccCCc--------hHHHHhhhcC--C
Confidence            3445566778888888888884 444444444443 55445 67788888888888888        8888888887  6


Q ss_pred             ccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccH
Q 027136           85 TLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARV  164 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  164 (227)
                      ..+.....+-+++|.+...+...+++.++.++.+ .+.++..|.||||.|+.+|+.++|++|+++|++.+ .+++.|+||
T Consensus       499 ~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~-ak~~~G~TP  576 (1143)
T KOG4177|consen  499 NDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN-AKDKLGYTP  576 (1143)
T ss_pred             ccCccchhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhhCCcccc-ccCCCCCCh
Confidence            6677777788888888888888888888888888 68888889999999999999999999999999988 888999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCCC
Q 027136          165 LLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPY  207 (227)
Q Consensus       165 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  207 (227)
                      ||.|+..|+.+++.+|+++ ++..+..|.+|.|||+.|++.++
T Consensus       577 LH~Aa~~G~~~i~~LLlk~-GA~vna~d~~g~TpL~iA~~lg~  618 (1143)
T KOG4177|consen  577 LHQAAQQGHNDIAELLLKH-GASVNAADLDGFTPLHIAVRLGY  618 (1143)
T ss_pred             hhHHHHcChHHHHHHHHHc-CCCCCcccccCcchhHHHHHhcc
Confidence            9999999998998888855 66778888999999999888654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=5.3e-25  Score=172.62  Aligned_cols=159  Identities=18%  Similarity=0.224  Sum_probs=147.4

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      +.+...|.+||-.|+.-|++++|+.|+..+. .++.. +....|||.-||.-|+.        +++++|++++  +++++
T Consensus        78 Dge~IegappLWaAsaAGHl~vVk~L~~~ga-~VN~t-T~TNStPLraACfDG~l--------eivKyLvE~g--ad~~I  145 (615)
T KOG0508|consen   78 DGETIEGAPPLWAASAAGHLEVVKLLLRRGA-SVNDT-TRTNSTPLRAACFDGHL--------EIVKYLVEHG--ADPEI  145 (615)
T ss_pred             CCcccCCCchhhHHhccCcHHHHHHHHHhcC-ccccc-cccCCccHHHHHhcchh--------HHHHHHHHcC--CCCcc
Confidence            3456789999999999999999999999985 55444 55567999999999999        9999999999  99999


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                      .|..|.|.|++|+..|+.+++++|++.+++ ++.++..|+|+||.++..|+.+++++|+.+|+.+.  ++..|.|||..|
T Consensus       146 anrhGhTcLmIa~ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~--~d~~GmtPL~~A  222 (615)
T KOG0508|consen  146 ANRHGHTCLMIACYKGHVDIAQYLLEQGAD-VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID--VDGHGMTPLLLA  222 (615)
T ss_pred             cccCCCeeEEeeeccCchHHHHHHHHhCCC-cchhcccCchHHHhhhhcccHHHHHHHHhCCceee--ecCCCCchHHHH
Confidence            999999999999999999999999999999 79999999999999999999999999999999986  677799999999


Q ss_pred             HHhCcHHHHHHHHH
Q 027136          169 IAANLYDVALDLLK  182 (227)
Q Consensus       169 ~~~~~~~~~~~Ll~  182 (227)
                      ...|+.++++.|++
T Consensus       223 a~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  223 AVTGHTDIVERLLQ  236 (615)
T ss_pred             hhhcchHHHHHHhc
Confidence            99999999999995

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=6e-24  Score=181.27  Aligned_cols=185  Identities=8%  Similarity=-0.071  Sum_probs=148.4

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhCCHH----HHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHH
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKNDWR----GVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKL   77 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g~~~----~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~L   77 (227)
                      +.+|...+.++..|.||||+|+..|+.+    +++.|++.+.. .+.. +  ..+++|+|+..++.        +++++|
T Consensus        55 l~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~-~--~~~~~~~a~~~~~~--------e~vk~L  122 (661)
T PHA02917         55 LDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIN-D--FNIFSYMKSKNVDV--------DLIKVL  122 (661)
T ss_pred             HHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCC-C--cchHHHHHhhcCCH--------HHHHHH
Confidence            4566677788889999999999999854    45666665432 2111 1  23667889999999        999999


Q ss_pred             HhcCCccccccCCCCCCcHHHHHH--hcCCHHHHHHHHHcCCCccccCCC---CC-----------ChHHHHHHH-----
Q 027136           78 ASKVDPQTLARQDEHGYTALFLCA--GKGNLRALKVLVKCNPNLTNIRGG---LD-----------TLPIHEAAY-----  136 (227)
Q Consensus        78 l~~~~~~~~~~~~~~~~t~L~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~---~g-----------~t~l~~a~~-----  136 (227)
                      ++.|  ++++.+|..|.||||.++  ..++.+++++|+++|++ ++..|.   .|           .||||+|+.     
T Consensus       123 l~~G--adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~-vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~  199 (661)
T PHA02917        123 VEHG--FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS-VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYS  199 (661)
T ss_pred             HHcC--CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC-ccccccccccccccccccccccccHHHHHHhhcccc
Confidence            9999  999999999999999654  57899999999999998 554432   34           599999986     


Q ss_pred             ------cCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH--HHHHHHHHhCCCCc---cccccccccHHHHHh
Q 027136          137 ------KGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY--DVALDLLKLHPTIG---RDSIDSRRIVLNKLA  203 (227)
Q Consensus       137 ------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~--~~~~~Ll~~~~~~~---~~~~~~g~t~l~~a~  203 (227)
                            .++.+++++|+++|++++ .++.+|.||||+|+.+|+.  ++++.|+ ++....   ...|..|.+|+++|+
T Consensus       200 ~~~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~~g~~~~eivk~Li-~g~d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        200 ESDTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQYYIKSSHIDIDIVKLLM-KGIDNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             cccccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHHHHHcCCCcHHHHHHHH-hCCcccccccccCcccccchHHHH
Confidence                  468999999999999999 9999999999999999984  7999987 444332   356677888888887

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.5e-24  Score=154.67  Aligned_cols=176  Identities=16%  Similarity=0.147  Sum_probs=116.4

Q ss_pred             cCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136            7 QGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus         7 ~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      ..++-...+.+|+.+++...+++.+..+.+.   .++.. |..|.|||.||+.+|+.        .++++|++.|  +++
T Consensus       121 rgnevs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~-De~GfTpLiWAaa~G~i--------~vV~fLL~~G--Adp  186 (296)
T KOG0502|consen  121 RGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNAC-DEFGFTPLIWAAAKGHI--------PVVQFLLNSG--ADP  186 (296)
T ss_pred             cCCccccccCChhhHHHHHHHHHHHHHHhhc---cccCc-cccCchHhHHHHhcCch--------HHHHHHHHcC--CCh
Confidence            3344445566677777666665555544332   23233 66777777777777777        7777777777  666


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHH
Q 027136           87 ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLL  166 (227)
Q Consensus        87 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  166 (227)
                      ........++|.+|++.|-.+++++|+.+.++ +|.-|++|.|||-||++.++.++++.|+..|++++ ..+..|++++.
T Consensus       187 ~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t-~e~dsGy~~md  264 (296)
T KOG0502|consen  187 DALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT-QEDDSGYWIMD  264 (296)
T ss_pred             hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcCCCcc-cccccCCcHHH
Confidence            66666666777777777777777777777777 57777777777777777777777777777777777 66777777777


Q ss_pred             HHHHhCcHHHHHHHHHhCCCCccccccccccHHH
Q 027136          167 LLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLN  200 (227)
Q Consensus       167 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  200 (227)
                      +|++.|+- +++.+++++... ..+|+..+||+|
T Consensus       265 lAValGyr-~Vqqvie~h~lk-l~Q~~~~~~~~~  296 (296)
T KOG0502|consen  265 LAVALGYR-IVQQVIEKHALK-LCQDSEKRTPLH  296 (296)
T ss_pred             HHHHhhhH-HHHHHHHHHHHH-HhhcccCCCCCC
Confidence            77777754 666666664433 355555566553

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=5.5e-24  Score=185.07  Aligned_cols=185  Identities=18%  Similarity=0.176  Sum_probs=166.7

Q ss_pred             CcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccc
Q 027136            6 DQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQT   85 (227)
Q Consensus         6 ~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~   85 (227)
                      .+.+.....|.||||.|+..|+.+.++.+++... ..+.. ...+-+++|.+...+..        ..++.+++.+  ++
T Consensus       465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~-~~~~~-~~~~l~~lhla~~~~~v--------~~~~~l~~~g--a~  532 (1143)
T KOG4177|consen  465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGA-NDNLD-AKKGLTPLHLAADEDTV--------KVAKILLEHG--AN  532 (1143)
T ss_pred             CCcchhccccCcchhhhhccCCchHHHHhhhcCC-ccCcc-chhccchhhhhhhhhhH--------HHHHHHhhcC--Cc
Confidence            3446677889999999999999999999888774 22233 67789999999999999        9999999999  88


Q ss_pred             cccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHH
Q 027136           86 LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVL  165 (227)
Q Consensus        86 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  165 (227)
                      .+.++..++||||.|+..|+.++|++|++++++ .+.+++.|+||||.|+..|+.+++++|+++|++++ ..+.+|.|||
T Consensus       533 v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn-a~d~~g~TpL  610 (1143)
T KOG4177|consen  533 VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN-AADLDGFTPL  610 (1143)
T ss_pred             eehhcccccchHHHHHhcCCchHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC-cccccCcchh
Confidence            999999999999999999999999999999999 68999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHhCcHHHHHHHHHhCCC----CccccccccccHHHHHhh
Q 027136          166 LLLIAANLYDVALDLLKLHPT----IGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       166 ~~a~~~~~~~~~~~Ll~~~~~----~~~~~~~~g~t~l~~a~~  204 (227)
                      ++|++.|++++++.|+..+..    .....+..|.+|..++..
T Consensus       611 ~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~  653 (1143)
T KOG4177|consen  611 HIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEE  653 (1143)
T ss_pred             HHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHH
Confidence            999999999999999977333    155777889999998765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.2e-23  Score=173.72  Aligned_cols=181  Identities=12%  Similarity=0.007  Sum_probs=146.8

Q ss_pred             hhhhcccHHHHHHHHhC---CHHHHHHHHHcCCcccccccCCCCccHHHHHHHhc--CccccchhHHHHHHHHHhcCCcc
Q 027136           10 DEYYVRYWPLYRMIEKN---DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVEL--LVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g---~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      .++..|.||||+|+..|   +.++++.|++.|+ .++.+ +..|.||||+|+..+  +.        +++++|++.+..+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GA-din~k-D~~G~TPLh~Aa~~~~~~~--------eIv~~Ll~~~~~~  105 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGV-ERLCR-NNEGLTPLGVYSKRKYVKS--------QIVHLLISSYSNA  105 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCC-CCccc-CCCCCChHHHHHHcCCCcH--------HHHHHHHhcCCCC
Confidence            45567999999999997   5999999999887 56577 899999999999977  67        9999999998445


Q ss_pred             ccccCCCCCCcHHHHHHh--cCCHHHHHHHHH-cCCCccccCC-----CCCChHHHHHHHcCChHHHHHHHhhcCCCcc-
Q 027136           85 TLARQDEHGYTALFLCAG--KGNLRALKVLVK-CNPNLTNIRG-----GLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI-  155 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~--~~~~~~~~~Ll~-~~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-  155 (227)
                      +++..+..+.+|||.++.  .++.+++++|+. .+.+ ++...     ..|.+|++++...++.+++++|++.|++++. 
T Consensus       106 ~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~-~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~  184 (672)
T PHA02730        106 SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIR-PSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGY  184 (672)
T ss_pred             CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCC-hhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccc
Confidence            557777778899999887  889999999997 4444 34332     3789999999999999999999999999841 


Q ss_pred             ------ccCCCCccHHHHHH------HhCcHHHHHHHHHhCCCCccccccccccHHHHH
Q 027136          156 ------YSGNDGARVLLLLI------AANLYDVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       156 ------~~~~~g~t~L~~a~------~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                            .......|.||+++      .++..++++.|++. |++.+.+|..|.||||++
T Consensus       185 ~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~-GadIN~kd~~G~TpLh~~  242 (672)
T PHA02730        185 VFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDN-NVSIHGRDEGGSLPIQYY  242 (672)
T ss_pred             ccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHC-CCCCCCCCCCCCCHHHHH
Confidence                  22333455677443      45679999999977 667789999999999963

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=2.6e-22  Score=176.55  Aligned_cols=145  Identities=19%  Similarity=0.144  Sum_probs=132.9

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      +..+.++|+.|+..|+.        ++++.|++.+  .+++..|..|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus       522 ~~~~~~~L~~Aa~~g~~--------~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~  590 (823)
T PLN03192        522 DPNMASNLLTVASTGNA--------ALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDAN  590 (823)
T ss_pred             CccchhHHHHHHHcCCH--------HHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCC
Confidence            44567999999999999        9999999999  89999999999999999999999999999999999 7999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |+||||+|+..|+.+++++|+..++..+   ...+.++||.|+..|+.++++.|++. +.+.+.+|..|.||||+|+..+
T Consensus       591 G~TpL~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        591 GNTALWNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAED  666 (823)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCC
Confidence            9999999999999999999998776644   35578999999999999999999976 6667899999999999999855

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=1.1e-22  Score=177.64  Aligned_cols=188  Identities=18%  Similarity=0.108  Sum_probs=135.8

Q ss_pred             CcCchhhhcccHHHH-HHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc
Q 027136            6 DQGEDEYYVRYWPLY-RMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus         6 ~~~~~~~~~~~~~L~-~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      .+.+..+..|.|||| .|+..++.++++.|++.+.     . +..|.||||.|+..+.. .    ...++..+.+.....
T Consensus        43 ~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~-~~~G~T~Lh~A~~~~~~-~----v~~ll~~l~~~~~~~  111 (743)
T TIGR00870        43 LNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----R-GAVGDTLLHAISLEYVD-A----VEAILLHLLAAFRKS  111 (743)
T ss_pred             cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----C-CCcChHHHHHHHhccHH-H----HHHHHHHHhhccccc
Confidence            334455567888888 7777777778887776664     2 66788888888762221 0    014445544443110


Q ss_pred             ----ccc----cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC--------------CCCChHHHHHHHcCChHH
Q 027136           85 ----TLA----RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG--------------GLDTLPIHEAAYKGHKNT  142 (227)
Q Consensus        85 ----~~~----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~  142 (227)
                          ..+    .....|.||||+|+..++.+++++|+++|++ ++.++              ..|.||||.|+..++.++
T Consensus       112 ~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~i  190 (743)
T TIGR00870       112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSI  190 (743)
T ss_pred             CchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHH
Confidence                011    1224689999999999999999999999998 45432              358999999999999999


Q ss_pred             HHHHHhhcCCCccccCCCCccHHHHHHHhC---------cHHHHHHHHHhCCC--Cc----cccccccccHHHHHhhCC
Q 027136          143 FQYLLEVTHGVDIYSGNDGARVLLLLIAAN---------LYDVALDLLKLHPT--IG----RDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       143 ~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~---------~~~~~~~Ll~~~~~--~~----~~~~~~g~t~l~~a~~~~  206 (227)
                      +++|++.|++++ ..+..|+||||+|+..+         ...+.+.+++....  ..    .++|++|.||||+|+..+
T Consensus       191 v~lLl~~gadin-~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       191 VALLSEDPADIL-TADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             HHHHhcCCcchh-hHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence            999999999999 99999999999999986         12344555544222  22    567999999999999855

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.8e-22  Score=169.22  Aligned_cols=192  Identities=13%  Similarity=0.078  Sum_probs=149.6

Q ss_pred             CCCCCCcCchhhhcccHHHHH--HHHhCCHHHHHHHHH--------------------------------cCCccccc--
Q 027136            1 MINSDDQGEDEYYVRYWPLYR--MIEKNDWRGVEDFVT--------------------------------NHPDALTA--   44 (227)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~L~~--a~~~g~~~~v~~ll~--------------------------------~~~~~~~~--   44 (227)
                      ||..|.+-+.++..|.||||+  +...|+.++++.|++                                .+.+. ..  
T Consensus       221 LIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~  299 (672)
T PHA02730        221 LIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVN  299 (672)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHH
Confidence            356677778888999999995  445567999999998                                22211 01  


Q ss_pred             -----------------ccCCCCcc---------------------HHHHHHHhcC-ccccchhHHHHHHHHHhcCCccc
Q 027136           45 -----------------KTVAPGSS---------------------TIFHAIVELL-VDVESDEATCLLDKLASKVDPQT   85 (227)
Q Consensus        45 -----------------~~~~~g~t---------------------~L~~a~~~~~-~~~~~~~~~~~~~~Ll~~~~~~~   85 (227)
                                       ..+..|.+                     .||.-.+++. .      ..+++++|+++|  ++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v------~ieIvelLIs~G--Ad  371 (672)
T PHA02730        300 LLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMV------SIPILRCMLDNG--AT  371 (672)
T ss_pred             HHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcC------cHHHHHHHHHCC--CC
Confidence                             01334433                     5666666553 2      239999999999  88


Q ss_pred             cccCCCCCCcHHHHHHhcCC----HHHHHHHHHcCCC-ccccCCCCCChHHHH---HHHcC---------ChHHHHHHHh
Q 027136           86 LARQDEHGYTALFLCAGKGN----LRALKVLVKCNPN-LTNIRGGLDTLPIHE---AAYKG---------HKNTFQYLLE  148 (227)
Q Consensus        86 ~~~~~~~~~t~L~~a~~~~~----~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~---a~~~~---------~~~~~~~Ll~  148 (227)
                      ++.. ..|.||||+|+..++    .+++++|+.+|++ .++.+|..|.||||.   +...+         ..+++++|+.
T Consensus       372 IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs  450 (672)
T PHA02730        372 MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK  450 (672)
T ss_pred             CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh
Confidence            9875 689999999998774    8999999999873 268889999999984   33222         2356999999


Q ss_pred             hcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCcccccc-ccccHHHHHhh
Q 027136          149 VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSID-SRRIVLNKLAQ  204 (227)
Q Consensus       149 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~  204 (227)
                      +|++++ .++..|+||||+|+..++.+++++|++. +++.+.++. .|.||+|.|+.
T Consensus       451 ~GADIN-akD~~G~TPLh~Aa~~~~~eive~LI~~-GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        451 YMDDID-MIDNENKTLLYYAVDVNNIQFARRLLEY-GASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             cccchh-ccCCCCCCHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCcCCcCHHHHHHH
Confidence            999999 9999999999999999999999999977 666678886 59999999976

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=2.5e-22  Score=144.31  Aligned_cols=131  Identities=11%  Similarity=0.008  Sum_probs=68.7

Q ss_pred             cccHHHHHHHHhCCHHHHH----HHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           14 VRYWPLYRMIEKNDWRGVE----DFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~----~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      .+.+++|.|++.|+.+.++    .+++.+. .++.+ +..|+||||+|+..|+.+..     +++++|++.+  ++++.+
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~-~~~~~-d~~g~t~Lh~Aa~~g~~~~~-----~~i~~Ll~~G--adin~~   89 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGH-LLHRY-DHHGRQCTHMVAWYDRANAV-----MKIELLVNMG--ADINAR   89 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcch-hhhcc-CCCCCcHHHHHHHhCccCHH-----HHHHHHHHcC--CCCCCC
Confidence            3445556666666653322    2222222 23233 55556666666655554100     2355555555  555555


Q ss_pred             C-CCCCcHHHHHHhcCCHHHHHHHHH-cCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCc
Q 027136           90 D-EHGYTALFLCAGKGNLRALKVLVK-CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVD  154 (227)
Q Consensus        90 ~-~~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  154 (227)
                      + ..|.||||+|+..++.+++++|+. .+.+ ++.++..|.||||+|+..++.+++++|+..|++++
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5 355566666666666666666653 4555 45555556666666666566666666665555555

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=145.18  Aligned_cols=127  Identities=13%  Similarity=0.153  Sum_probs=114.1

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC----CccccccCCCCCCcHHHHHHhcCC----HHHHHHHHHcCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV----DPQTLARQDEHGYTALFLCAGKGN----LRALKVLVKCNPN  118 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~----~~~~~~~~~~~~~t~L~~a~~~~~----~~~~~~Ll~~~~~  118 (227)
                      +..|.||||+|+..|+.        ++++.|+...    ..++++.+|..|.||||+|+..++    .+++++|+..+++
T Consensus        18 ~~~g~t~Lh~Aa~~g~~--------~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad   89 (169)
T PHA02741         18 NSEGENFFHEAARCGCF--------DIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD   89 (169)
T ss_pred             ccCCCCHHHHHHHcCCH--------HHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC
Confidence            67899999999999999        9999886431    126788899999999999999998    5899999999999


Q ss_pred             ccccCCC-CCChHHHHHHHcCChHHHHHHHh-hcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHh
Q 027136          119 LTNIRGG-LDTLPIHEAAYKGHKNTFQYLLE-VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       119 ~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                       ++.++. .|.||||+|+..++.+++++|+. .|++++ ..+..|+||||+|+..++.++++.|++.
T Consensus        90 -in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         90 -INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             -CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence             688875 89999999999999999999997 589998 9999999999999999999999999876

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=5.7e-23  Score=156.50  Aligned_cols=150  Identities=15%  Similarity=0.114  Sum_probs=136.8

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHh-----cCCHHHHHHHHHcCCCccc
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAG-----KGNLRALKVLVKCNPNLTN  121 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~-----~~~~~~~~~Ll~~~~~~~~  121 (227)
                      |.+|.|+|||++..+++        ++|+.|++.+ -++++.++..|.||+.+++.     ..+.++|..|.+.+-- -.
T Consensus       265 DsNGNTALHYsVSHaNF--------~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV-Na  334 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANF--------DVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV-NA  334 (452)
T ss_pred             cCCCCeeeeeeecccch--------HHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc-ch
Confidence            89999999999999999        9999999998 58899999999999999983     3567889999888763 23


Q ss_pred             cCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHH
Q 027136          122 IRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNK  201 (227)
Q Consensus       122 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  201 (227)
                      .....|+|+|++|+..|+.++++.||..|+++| .+|.+|.|+|+.|+..|+.|++++||....++...+|.+|.|+|.+
T Consensus       335 KAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  335 KASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSI  413 (452)
T ss_pred             hhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhh
Confidence            346679999999999999999999999999999 9999999999999999999999999999899999999999999999


Q ss_pred             HhhCCC
Q 027136          202 LAQKPY  207 (227)
Q Consensus       202 a~~~~~  207 (227)
                      |-..+.
T Consensus       414 Aleagh  419 (452)
T KOG0514|consen  414 ALEAGH  419 (452)
T ss_pred             HHhcCc
Confidence            987654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.1e-21  Score=163.18  Aligned_cols=186  Identities=8%  Similarity=0.016  Sum_probs=149.6

Q ss_pred             hhhhcccHHHHHHHHhC-------CHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccc-----hh--------
Q 027136           10 DEYYVRYWPLYRMIEKN-------DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVES-----DE--------   69 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g-------~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~-----~~--------   69 (227)
                      .+...|.||||+|+..+       ..++++.|++++. .++.+ +..|.||||+|+...+.+...     ++        
T Consensus       170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~-~~~~~-d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~  247 (631)
T PHA02792        170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEK-EMRYY-TYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELM  247 (631)
T ss_pred             cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCC-CcCcc-CCCCChHHHHHHHcccchHHHHHHHHhccccccchH
Confidence            44566999999999999       8999999999987 44456 788999999999888332110     00        


Q ss_pred             ------------------------------------------------------------------------HHHHHHHH
Q 027136           70 ------------------------------------------------------------------------ATCLLDKL   77 (227)
Q Consensus        70 ------------------------------------------------------------------------~~~~~~~L   77 (227)
                                                                                              ..+++++|
T Consensus       248 ~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~L  327 (631)
T PHA02792        248 NILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCM  327 (631)
T ss_pred             hHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHH
Confidence                                                                                    45555666


Q ss_pred             HhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCC--ChHHHHHHHcCCh---HHHHHHHhhcCC
Q 027136           78 ASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLD--TLPIHEAAYKGHK---NTFQYLLEVTHG  152 (227)
Q Consensus        78 l~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~~~~Ll~~~~~  152 (227)
                      ++.|  ++..  ......+++.|+..++.+++++|+++|++ ++.+|..|  .||||.|......   +++++|+++|++
T Consensus       328 Id~G--a~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD  402 (631)
T PHA02792        328 IDEG--ATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD  402 (631)
T ss_pred             HHCC--Cccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc
Confidence            6666  3332  22345678899999999999999999999 68888775  6999998776654   468889999999


Q ss_pred             CccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          153 VDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       153 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      ++ .++..|+||||+|+..++.+++++|++. +++.+.+|..|.||+++|+.
T Consensus       403 IN-~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        403 IN-KIDKHGRSILYYCIESHSVSLVEWLIDN-GADINITTKYGSTCIGICVI  452 (631)
T ss_pred             cc-cccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH
Confidence            99 9999999999999999999999999977 66678999999999999965

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=7.8e-22  Score=141.74  Aligned_cols=141  Identities=13%  Similarity=0.071  Sum_probs=119.2

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHH---HHHHHHHcCCCccccC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLR---ALKVLVKCNPNLTNIR  123 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~---~~~~Ll~~~~~~~~~~  123 (227)
                      +..+.++||.||+.|+.+    ...+++++|.+.+  ..++.+|..|+||||+|+..++.+   ++++|++.+++ ++.+
T Consensus        17 ~~~~~~~l~~a~~~g~~~----~l~~~~~~l~~~g--~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~   89 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIY----ELMEVAPFISGDG--HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INAR   89 (166)
T ss_pred             ccCCCcHHHHHHHcCCHH----HHHHHHHHHhhcc--hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCC
Confidence            566789999999999872    1124556777777  778889999999999999988765   48999999999 6888


Q ss_pred             C-CCCChHHHHHHHcCChHHHHHHHh-hcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccc
Q 027136          124 G-GLDTLPIHEAAYKGHKNTFQYLLE-VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRR  196 (227)
Q Consensus       124 ~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  196 (227)
                      + ..|.||||+|+..++.+++++|+. .|++++ .++..|.||||+|+..++.++++.|++. +.....++..|.
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~  162 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcccCCc
Confidence            7 589999999999999999999995 799999 8999999999999999999999999976 555556666554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=5.3e-23  Score=146.81  Aligned_cols=178  Identities=18%  Similarity=0.172  Sum_probs=150.6

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      +|.+.++.++-.|+...+...+..+. ..+.. +.-+.+|+.+++...+.        +.+..+.+..    +|..|..|
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttltN~~-rgnev-s~~p~s~~slsVhql~L--------~~~~~~~~n~----VN~~De~G  160 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTLTNGA-RGNEV-SLMPWSPLSLSVHQLHL--------DVVDLLVNNK----VNACDEFG  160 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeeecccc-cCCcc-ccccCChhhHHHHHHHH--------HHHHHHhhcc----ccCccccC
Confidence            37777777777777666666665543 22222 45567777777777777        7766666665    78899999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCc
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANL  173 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~  173 (227)
                      .|||.||++.|+.+++++|++.|++ +....++..++|..|++.|..+++++|+.++.++| ..+.+|.|||-+|++.++
T Consensus       161 fTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN-vyDwNGgTpLlyAvrgnh  238 (296)
T KOG0502|consen  161 FTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYRESALSLATRGGYTDIVELLLTREVDVN-VYDWNGGTPLLYAVRGNH  238 (296)
T ss_pred             chHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc-eeccCCCceeeeeecCCh
Confidence            9999999999999999999999999 78889999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccccccccHHHHHhhCCCc
Q 027136          174 YDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPYA  208 (227)
Q Consensus       174 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  208 (227)
                      .++++.||.. +++.+..+..|.+++.+|+.-+|+
T Consensus       239 vkcve~Ll~s-GAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  239 VKCVESLLNS-GADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             HHHHHHHHhc-CCCcccccccCCcHHHHHHHhhhH
Confidence            9999999977 677789999999999999986554

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=7.3e-22  Score=142.47  Aligned_cols=135  Identities=17%  Similarity=0.086  Sum_probs=114.9

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcC-----CcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNH-----PDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~-----~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      .++..|.|+||.|+..|+.++++.++...     +..++.+ +..|.||||+|+..|+...    ..+++++|++.+  +
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~----~~~ii~~Ll~~g--a   88 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQL----AAEIIDHLIELG--A   88 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHH----HHHHHHHHHHcC--C
Confidence            34567999999999999999999886431     2345555 8889999999999998311    118899999999  8


Q ss_pred             ccccCCC-CCCcHHHHHHhcCCHHHHHHHHH-cCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q 027136           85 TLARQDE-HGYTALFLCAGKGNLRALKVLVK-CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG  152 (227)
Q Consensus        85 ~~~~~~~-~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  152 (227)
                      +++.++. .|.||||+|+..++.+++++|+. .+.+ ++..|..|.||||+|+..++.+++++|++.++.
T Consensus        89 din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         89 DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8998885 89999999999999999999998 4787 789999999999999999999999999987654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=4.1e-22  Score=151.87  Aligned_cols=163  Identities=20%  Similarity=0.283  Sum_probs=142.4

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC-
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD-   90 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~-   90 (227)
                      ...|.|+||+++..+++++|+.||+.+-..++.+ +..|.||+.+++.....   .+....+|..|+..|   ++|.+. 
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q-NrAGYtpiMLaALA~lk---~~~d~~vV~~LF~mg---nVNaKAs  337 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ-NRAGYTPVMLAALAKLK---QPADRTVVERLFKMG---DVNAKAS  337 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCccccccc-ccccccHHHHHHHHhhc---chhhHHHHHHHHhcc---Ccchhhh
Confidence            3569999999999999999999999998787666 99999999988765432   122337888999887   466554 


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhh-cCCCccccCCCCccHHHHHH
Q 027136           91 EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV-THGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        91 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~a~  169 (227)
                      ..|+|+|.+|+..|+.++++.|+.++++ +|++|..|.|+|+.|+..||.+++++||.. +.++. ..|.+|.|+|.+|.
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s-LtD~DgSTAl~IAl  415 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS-LTDVDGSTALSIAL  415 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccce-eecCCCchhhhhHH
Confidence            4799999999999999999999999999 799999999999999999999999999975 57788 99999999999999


Q ss_pred             HhCcHHHHHHHHHh
Q 027136          170 AANLYDVALDLLKL  183 (227)
Q Consensus       170 ~~~~~~~~~~Ll~~  183 (227)
                      ..|+.+|..+|..+
T Consensus       416 eagh~eIa~mlYa~  429 (452)
T KOG0514|consen  416 EAGHREIAVMLYAH  429 (452)
T ss_pred             hcCchHHHHHHHHH
Confidence            99999999988765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.87  E-value=1.5e-21  Score=170.63  Aligned_cols=178  Identities=16%  Similarity=0.033  Sum_probs=141.9

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCC-cccccccCCCCccHHH-HHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHP-DALTAKTVAPGSSTIF-HAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~-~~~~~~~~~~g~t~L~-~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      -..+...++.|++.|+.+.++.+++..+ ..++.. |..|+|||| .|+..++.        +++++|++.+  .    .
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~--------eiv~lLl~~g--~----~   78 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENL--------ELTELLLNLS--C----R   78 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChH--------HHHHHHHhCC--C----C
Confidence            3457799999999999999999998732 244444 788999999 88888898        9999999998  4    6


Q ss_pred             CCCCCcHHHHHHhc---CCHHHHHHHHHcCCC-----cc----ccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCcccc
Q 027136           90 DEHGYTALFLCAGK---GNLRALKVLVKCNPN-----LT----NIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYS  157 (227)
Q Consensus        90 ~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~-----~~----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  157 (227)
                      +..|.||||.|+..   +...++..+...+..     ..    ......|.||||+|+..|+.+++++|++.|++++ .+
T Consensus        79 ~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~  157 (743)
T TIGR00870        79 GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-AR  157 (743)
T ss_pred             CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cC
Confidence            67899999999872   222334444443321     00    1123569999999999999999999999999987 43


Q ss_pred             C--------------CCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          158 G--------------NDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       158 ~--------------~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      .              ..|.||||.|+..|+.++++.|++. +++.+.+|..|+||||+|+..+
T Consensus       158 ~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       158 ACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED-PADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC-CcchhhHhhhhhHHHHHHHhhh
Confidence            2              3689999999999999999999966 6677899999999999998854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=5.5e-21  Score=131.73  Aligned_cols=141  Identities=17%  Similarity=0.103  Sum_probs=126.5

Q ss_pred             HHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHH
Q 027136           53 TIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIH  132 (227)
Q Consensus        53 ~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  132 (227)
                      .+-+|+..+..        ..|+.|++.. +.-++.+|.+|.||||-|+.+|+.++++.|+..+++ .+.+...|+||||
T Consensus        66 l~lwaae~nrl--------~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLh  135 (228)
T KOG0512|consen   66 LLLWAAEKNRL--------TEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLH  135 (228)
T ss_pred             HHHHHHhhccH--------HHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchh
Confidence            45678889999        9999999988 345789999999999999999999999999999999 7999999999999


Q ss_pred             HHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCc-HHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          133 EAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANL-YDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       133 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      .||...+.+++.+|+.+|++++ .......||||+|+.+.+ ...+.+|+.........++..+.||+..|-+
T Consensus       136 SAckWnN~~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  136 SACKWNNFEVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             hhhcccchhHHHHHHhccCccc-ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            9999999999999999999999 999999999999998766 5667777766666777888999999999866

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=8.1e-21  Score=146.86  Aligned_cols=138  Identities=12%  Similarity=0.076  Sum_probs=117.3

Q ss_pred             CCCCcc-HHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC----CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccc
Q 027136           47 VAPGSS-TIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ----DEHGYTALFLCAGKGNLRALKVLVKCNPNLTN  121 (227)
Q Consensus        47 ~~~g~t-~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~  121 (227)
                      +..|.+ +||.|+..|+.        +++++|++.|  ++++.+    +..|.||||+|+..++.+++++|+++|++ ++
T Consensus        29 d~~~~~~lL~~A~~~~~~--------eivk~LL~~G--AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN   97 (300)
T PHA02884         29 NKICIANILYSSIKFHYT--------DIIDAILKLG--ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VN   97 (300)
T ss_pred             CcCCCCHHHHHHHHcCCH--------HHHHHHHHCC--CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cC
Confidence            555555 57788888999        9999999999  888876    45899999999999999999999999999 68


Q ss_pred             cC-CCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHH
Q 027136          122 IR-GGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLN  200 (227)
Q Consensus       122 ~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  200 (227)
                      .. +..|.||||+|+..++.+++++|+..|++++ .++..|.||||+|+..++.+++..+...      ..+..+.+|++
T Consensus        98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~  170 (300)
T PHA02884         98 RYAEEAKITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKK  170 (300)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhh
Confidence            75 5679999999999999999999999999999 9999999999999998888877555422      23555667766


Q ss_pred             HH
Q 027136          201 KL  202 (227)
Q Consensus       201 ~a  202 (227)
                      ++
T Consensus       171 ~~  172 (300)
T PHA02884        171 IL  172 (300)
T ss_pred             hh
Confidence            43

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2.5e-20  Score=144.15  Aligned_cols=150  Identities=17%  Similarity=0.061  Sum_probs=124.7

Q ss_pred             hccc-HHHHHHHHhCCHHHHHHHHHcCCccccccc---CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136           13 YVRY-WPLYRMIEKNDWRGVEDFVTNHPDALTAKT---VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus        13 ~~~~-~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~---~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      ..+. ++||.|++.|+.++++.|++.|.+ ++.+.   +..|.||||+|+..++.        +++++|++.|  ++++.
T Consensus        30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~--------eivklLL~~G--ADVN~   98 (300)
T PHA02884         30 KICIANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDND--------DAAKLLIRYG--ADVNR   98 (300)
T ss_pred             cCCCCHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCcCc
Confidence            3444 677888888999999999999874 43431   35799999999999999        9999999999  89998


Q ss_pred             C-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHH
Q 027136           89 Q-DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLL  167 (227)
Q Consensus        89 ~-~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  167 (227)
                      + +..|.||||+|+..++.+++++|+..|++ ++.+|..|.||||+|+..++..++..+...      ..+..+.+|+++
T Consensus        99 ~~~~~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~  171 (300)
T PHA02884         99 YAEEAKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKI  171 (300)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhh
Confidence            6 45799999999999999999999999999 799999999999999999988887655432      234556788886


Q ss_pred             HHHhCcHHHHHHHHHh
Q 027136          168 LIAANLYDVALDLLKL  183 (227)
Q Consensus       168 a~~~~~~~~~~~Ll~~  183 (227)
                      +   ++.++++.|+++
T Consensus       172 ~---~n~ei~~~Lish  184 (300)
T PHA02884        172 L---INFDILKILVSH  184 (300)
T ss_pred             h---ccHHHHHHHHHH
Confidence            5   357888888876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=2.5e-21  Score=137.78  Aligned_cols=133  Identities=12%  Similarity=-0.038  Sum_probs=73.6

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcC----CcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccc
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNH----PDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLA   87 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~----~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~   87 (227)
                      +..|.||||+|++.|+...+.......    +...... +..|.||||+|+..|+.+.     .+++++|++.+  ++++
T Consensus        14 d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~-----~e~v~~Ll~~g--adin   85 (154)
T PHA02736         14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADP-----QEKLKLLMEWG--ADIN   85 (154)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhH-----HHHHHHHHHcC--CCcc
Confidence            345667777777666632221111110    0011122 5556666666666665511     13456666666  5666


Q ss_pred             cCC-CCCCcHHHHHHhcCCHHHHHHHHHc-CCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCC
Q 027136           88 RQD-EHGYTALFLCAGKGNLRALKVLVKC-NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGV  153 (227)
Q Consensus        88 ~~~-~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  153 (227)
                      .++ ..|.||||+|+..++.+++++|+.. +.+ ++.++..|.||||+|+..|+.+++++|+..|++.
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            665 3566666666666666666666653 555 4666666666666666666666666666665543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=4.1e-21  Score=136.66  Aligned_cols=128  Identities=12%  Similarity=0.078  Sum_probs=106.1

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC---CccccccCCCCCCcHHHHHHhcCCH---HHHHHHHHcCCCcc
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV---DPQTLARQDEHGYTALFLCAGKGNL---RALKVLVKCNPNLT  120 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~---~~~~~~~~~~~~~t~L~~a~~~~~~---~~~~~Ll~~~~~~~  120 (227)
                      +..|.||||+|+..|+.        ..+-.+....   .+..+...|..|.||||+|+..+..   +++++|++.+.+ +
T Consensus        14 d~~g~tpLh~A~~~g~~--------~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-i   84 (154)
T PHA02736         14 DIEGENILHYLCRNGGV--------TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-I   84 (154)
T ss_pred             CCCCCCHHHHHHHhCCH--------HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-c
Confidence            77899999999999986        3222221111   0123445688999999999999886   468999999998 6


Q ss_pred             ccCC-CCCChHHHHHHHcCChHHHHHHHh-hcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhC
Q 027136          121 NIRG-GLDTLPIHEAAYKGHKNTFQYLLE-VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH  184 (227)
Q Consensus       121 ~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~  184 (227)
                      +.++ ..|.||||+|+..++.+++++|+. .|++++ .++..|+||||+|+..++.++++.|+..+
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            8887 589999999999999999999997 489998 99999999999999999999999999764

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=5.5e-21  Score=152.28  Aligned_cols=172  Identities=17%  Similarity=0.176  Sum_probs=115.5

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHH
Q 027136           19 LYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALF   98 (227)
Q Consensus        19 L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~   98 (227)
                      +..|+..|+.+.+..++..+.. ++.. +.+|.|+||-+|.-.+.        +|+++|++.+  ++++..|..++||||
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~-~~~~-n~DglTalhq~~id~~~--------e~v~~l~e~g--a~Vn~~d~e~wtPlh  111 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGAS-PNLC-NVDGLTALHQACIDDNL--------EMVKFLVENG--ANVNAQDNEGWTPLH  111 (527)
T ss_pred             HHhccccccHHHHHHHhccCCC-cccc-CCccchhHHHHHhcccH--------HHHHHHHHhc--CCccccccccCCcch
Confidence            4445556666666666655532 2233 55566666666666666        6666666666  566666666666666


Q ss_pred             HHHhcCCHHHHHHHHHcCCCc----------------------------------------------------------c
Q 027136           99 LCAGKGNLRALKVLVKCNPNL----------------------------------------------------------T  120 (227)
Q Consensus        99 ~a~~~~~~~~~~~Ll~~~~~~----------------------------------------------------------~  120 (227)
                      .|+..|+..++++|+.+++++                                                          .
T Consensus       112 aaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~  191 (527)
T KOG0505|consen  112 AAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL  191 (527)
T ss_pred             hhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc
Confidence            666666666666666654442                                                          2


Q ss_pred             ccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHH
Q 027136          121 NIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLN  200 (227)
Q Consensus       121 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  200 (227)
                      .+.+..|.|.||.|+..|..++.++|+.+|.+++ .++.+||||||.|+.=|..++++.|++. +++.......|.||+.
T Consensus       192 d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~-~~D~dgWtPlHAAA~Wg~~~~~elL~~~-ga~~d~~t~~g~~p~d  269 (527)
T KOG0505|consen  192 DARHARGATALHVAAANGYTEVAALLLQAGYSVN-IKDYDGWTPLHAAAHWGQEDACELLVEH-GADMDAKTKMGETPLD  269 (527)
T ss_pred             cccccccchHHHHHHhhhHHHHHHHHHHhccCcc-cccccCCCcccHHHHhhhHhHHHHHHHh-hcccchhhhcCCCCcc
Confidence            4455558888888888888888888888888888 8888888888888888888888866644 5556678888888888


Q ss_pred             HHhh
Q 027136          201 KLAQ  204 (227)
Q Consensus       201 ~a~~  204 (227)
                      ++..
T Consensus       270 v~de  273 (527)
T KOG0505|consen  270 VADE  273 (527)
T ss_pred             chhh
Confidence            7754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=2.4e-20  Score=128.58  Aligned_cols=144  Identities=15%  Similarity=0.138  Sum_probs=130.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcH
Q 027136           17 WPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTA   96 (227)
Q Consensus        17 ~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~   96 (227)
                      -.+.+|+..+.+..|+.||++.+..++.+ |.+|.||||-|+.+|+.        +|++.|+..+  ++.+.+...|+||
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h~--------div~~ll~~g--An~~a~T~~GWTP  133 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGHL--------DIVHELLLSG--ANKEAKTNEGWTP  133 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCch--------HHHHHHHHcc--CCcccccccCccc
Confidence            45788999999999999999999999999 99999999999999999        9999999999  9999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCCh-HHHHHHHh-hcCCCccccCCCCccHHHHHHHhCc
Q 027136           97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHK-NTFQYLLE-VTHGVDIYSGNDGARVLLLLIAANL  173 (227)
Q Consensus        97 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~  173 (227)
                      ||.||.-.+.+++.+|++++++ ++.......||||.|+...+. ..+++|+. .+..+. .++..+.||+.+|-+.+.
T Consensus       134 LhSAckWnN~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg-~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  134 LHSACKWNNFEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG-LKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhhhhcccchhHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChh-hhcCccchHHHHHHHhhh
Confidence            9999999999999999999999 799998999999999988764 45566654 456666 889999999999998764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.84  E-value=6.5e-21  Score=157.18  Aligned_cols=182  Identities=18%  Similarity=0.087  Sum_probs=124.2

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      +....+|+|.||.|+..|+..+++.+++..+ ..... +..|.+|||+|++.|+.        ++++.++...  ..++.
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle~ea-~ldl~-d~kg~~plhlaaw~g~~--------e~vkmll~q~--d~~na  110 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLDYEA-LLDLC-DTKGILPLHLAAWNGNL--------EIVKMLLLQT--DILNA  110 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhcchh-hhhhh-hccCcceEEehhhcCcc--------hHHHHHHhcc--cCCCc
Confidence            3445578899999999999999988887765 33233 56788888888888888        8888888888  67788


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCC-------ccccCCCC
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGV-------DIYSGNDG  161 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-------~~~~~~~g  161 (227)
                      ....|.||||.|+..|+.+++.+|+.++++ .-+++..+.|++-.|++.|..++++.|+...-..       ...+.-.+
T Consensus       111 ~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~  189 (854)
T KOG0507|consen  111 VNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPA  189 (854)
T ss_pred             ccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCC
Confidence            888888888888888888888888888887 6677777777777777777666666665431110       11334445


Q ss_pred             ccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          162 ARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       162 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      .+|||+|..+|+.++++.|++. +.+.+.... .-|+||.|+.-
T Consensus       190 ~~plHlaakngh~~~~~~ll~a-g~din~~t~-~gtalheaalc  231 (854)
T KOG0507|consen  190 IYPLHLAAKNGHVECMQALLEA-GFDINYTTE-DGTALHEAALC  231 (854)
T ss_pred             cCCcchhhhcchHHHHHHHHhc-CCCcccccc-cchhhhhHhhc
Confidence            5666666666666666666544 333333322 23455555443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.82  E-value=6e-20  Score=151.58  Aligned_cols=177  Identities=21%  Similarity=0.145  Sum_probs=155.3

Q ss_pred             cHHHHHHHHhCCHHHHHHHHHcCC------------cccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc
Q 027136           16 YWPLYRMIEKNDWRGVEDFVTNHP------------DALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus        16 ~~~L~~a~~~g~~~~v~~ll~~~~------------~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      .+-|..|++.|+.+.+..+|+...            ...+.. +.+|.|.||.|+..|+.        +++++|++..  
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q-d~~gfTalhha~Lng~~--------~is~llle~e--   72 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ-DYSGFTLLHHAVLNGQN--------QISKLLLDYE--   72 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc-CccchhHHHHHHhcCch--------HHHHHHhcch--
Confidence            356889999999999999998621            223333 77899999999999999        9999999998  


Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCcc
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGAR  163 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  163 (227)
                      +.+...+..|.+|||+|++.|+.++++.++.++.. .+..+..|.||||.|+..|+.+++.+|+..++++- ..++.+.|
T Consensus        73 a~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t  150 (854)
T KOG0507|consen   73 ALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKET  150 (854)
T ss_pred             hhhhhhhccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCccccc
Confidence            77888889999999999999999999999999966 79999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhCCCC--------ccccccccccHHHHHhhCC
Q 027136          164 VLLLLIAANLYDVALDLLKLHPTI--------GRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       164 ~L~~a~~~~~~~~~~~Ll~~~~~~--------~~~~~~~g~t~l~~a~~~~  206 (227)
                      +|.+|++.|..+++++|++. ...        ...++-.+.+|||+|++++
T Consensus       151 ~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  151 VLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             HHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcc
Confidence            99999999999999999987 211        1134456789999999877

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.8e-20  Score=137.04  Aligned_cols=150  Identities=17%  Similarity=0.183  Sum_probs=126.1

Q ss_pred             HHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHh
Q 027136           23 IEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAG  102 (227)
Q Consensus        23 ~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~  102 (227)
                      ++.|+.--|+..|+...-+.+.- |.+|.+|||+|++.|+.        .+++.|+..|  +.++..+....||||+|+.
T Consensus         8 cregna~qvrlwld~tehdln~g-ddhgfsplhwaakegh~--------aivemll~rg--arvn~tnmgddtplhlaaa   76 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVG-DDHGFSPLHWAAKEGHV--------AIVEMLLSRG--ARVNSTNMGDDTPLHLAAA   76 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccc-cccCcchhhhhhhcccH--------HHHHHHHhcc--cccccccCCCCcchhhhhh
Confidence            56666666666666655455455 88899999999999999        9999999999  8899888888999999999


Q ss_pred             cCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHH
Q 027136          103 KGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLK  182 (227)
Q Consensus       103 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  182 (227)
                      .|+.+++..|++..++ +|..+..|+|||||||..|...+.+-|+..|+.++ .-++.|.|||..|.-.- .+.+..+.+
T Consensus        77 hghrdivqkll~~kad-vnavnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldkakp~l-~~~l~e~ae  153 (448)
T KOG0195|consen   77 HGHRDIVQKLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDKAKPML-KNTLLEIAE  153 (448)
T ss_pred             cccHHHHHHHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhhhchHH-HHHHHHHHH
Confidence            9999999999999999 79999999999999999999999999999999999 99999999999775432 233444444


Q ss_pred             hCCC
Q 027136          183 LHPT  186 (227)
Q Consensus       183 ~~~~  186 (227)
                      +++.
T Consensus       154 k~gq  157 (448)
T KOG0195|consen  154 KHGQ  157 (448)
T ss_pred             HhCC
Confidence            5444

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=5.7e-19  Score=140.90  Aligned_cols=155  Identities=19%  Similarity=0.157  Sum_probs=138.1

Q ss_pred             CCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCC
Q 027136            3 NSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVD   82 (227)
Q Consensus         3 ~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~   82 (227)
                      +.+...+..|-+|.|+||.++...+.++|+++++.+. .++.. +..|.||||.|+..|+.        .++.+|+..+ 
T Consensus        61 ~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga-~Vn~~-d~e~wtPlhaaascg~~--------~i~~~li~~g-  129 (527)
T KOG0505|consen   61 NRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGA-NVNAQ-DNEGWTPLHAAASCGYL--------NIVEYLIQHG-  129 (527)
T ss_pred             ccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcC-Ccccc-ccccCCcchhhcccccH--------HHHHHHHHhh-
Confidence            3444446778899999999999999999999999987 55566 88999999999999999        9999998887 


Q ss_pred             ccc-----------------------------------------------------------cccCCCCCCcHHHHHHhc
Q 027136           83 PQT-----------------------------------------------------------LARQDEHGYTALFLCAGK  103 (227)
Q Consensus        83 ~~~-----------------------------------------------------------~~~~~~~~~t~L~~a~~~  103 (227)
                       ++                                                           ...++..|-|.||.|+..
T Consensus       130 -A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~  208 (527)
T KOG0505|consen  130 -ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAAN  208 (527)
T ss_pred             -hhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhh
Confidence             43                                                           344555588999999999


Q ss_pred             CCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHh
Q 027136          104 GNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAA  171 (227)
Q Consensus       104 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~  171 (227)
                      |..++.++|++.+.+ ++.+|..|+||||.|+..|..++.++|+++|++.+ .....|.||+.+|...
T Consensus       209 Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d-~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  209 GYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMD-AKTKMGETPLDVADEE  274 (527)
T ss_pred             hHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHHhhcccc-hhhhcCCCCccchhhh
Confidence            999999999999999 79999999999999999999999999999999999 9999999999988764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.79  E-value=5.9e-18  Score=115.58  Aligned_cols=123  Identities=24%  Similarity=0.301  Sum_probs=110.8

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      +..|.||||.|+..++.        +++++|++.+  ...+..+..|.+|+|.|+..++.+++++|++.++. ++..+..
T Consensus         4 ~~~g~t~l~~a~~~~~~--------~~i~~li~~~--~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~   72 (126)
T cd00204           4 DEDGRTPLHLAASNGHL--------EVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKD   72 (126)
T ss_pred             CcCCCCHHHHHHHcCcH--------HHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCC
Confidence            56789999999999999        9999999998  66678888899999999999999999999999976 5778889


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHH
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLL  181 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  181 (227)
                      +.||+|+|+..++.+++++|+..+...+ ..+..|.||++.|...++.+++++|+
T Consensus        73 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          73 GNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999988887 78889999999999999999988874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.78  E-value=1.1e-17  Score=139.49  Aligned_cols=156  Identities=9%  Similarity=0.027  Sum_probs=130.6

Q ss_pred             cHHHHHHHHhC--CHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           16 YWPLYRMIEKN--DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        16 ~~~L~~a~~~g--~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      +..||.-...+  +.++++.+++.|....    ...+..+++.|+..|+.        +++++|++.|  ++++.+|..|
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~----r~~~~n~~~~Aa~~gn~--------eIVelLIs~G--ADIN~kD~~g  372 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMIDEGATLY----RFKHINKYFQKFDNRDP--------KVVEYILKNG--NVVVEDDDNI  372 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHCCCccc----cCCcchHHHHHHHcCCH--------HHHHHHHHcC--CchhhhcCCC
Confidence            35677777777  6789999999997543    23355678999999999        9999999999  8898888764


Q ss_pred             --CcHHHHHHhcCCH---HHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           94 --YTALFLCAGKGNL---RALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        94 --~t~L~~a~~~~~~---~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                        .||||+|+.....   +++++|+.++++ ++.+|..|.||||+|+..++.+++++|+++|++++ .++..|.|||++|
T Consensus       373 ~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN-~kD~~G~TpL~~A  450 (631)
T PHA02792        373 INIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN-ITTKYGSTCIGIC  450 (631)
T ss_pred             CChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHH
Confidence              6999998766554   468999999999 79999999999999999999999999999999999 9999999999999


Q ss_pred             HH----------hCcHHHHHHHHHhCCCC
Q 027136          169 IA----------ANLYDVALDLLKLHPTI  187 (227)
Q Consensus       169 ~~----------~~~~~~~~~Ll~~~~~~  187 (227)
                      +.          ....++++.|+++++..
T Consensus       451 ~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        451 VILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            75          22356788888876554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=3.1e-19  Score=132.72  Aligned_cols=116  Identities=23%  Similarity=0.278  Sum_probs=109.9

Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCcc
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGAR  163 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  163 (227)
                      .+++..|..|.+|||+|++-|+..+++.|+..|+. +|..+....||||.|+..|+.++++.|++..++++ ..+..|.|
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~kadvn-avnehgnt  102 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN-AVNEHGNT  102 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHhcccc-hhhccCCC
Confidence            67889999999999999999999999999999999 79999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHH
Q 027136          164 VLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       164 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      |||+||-=|+..+++.|+.. ++..++-++.|.||+..|
T Consensus       103 plhyacfwgydqiaedli~~-ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhh
Confidence            99999999999999999977 666689999999999876

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=5.9e-18  Score=141.19  Aligned_cols=162  Identities=14%  Similarity=0.074  Sum_probs=142.3

Q ss_pred             hhhhcccHHHHHHHHh---CCHHHHHHHHHcCCcccccccC---CCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc
Q 027136           10 DEYYVRYWPLYRMIEK---NDWRGVEDFVTNHPDALTAKTV---APGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~---g~~~~v~~ll~~~~~~~~~~~~---~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      +.-..|.|.||.|...   +.-++++.|++..|+.++....   ..|.||||+|+.+.+.        ++|++|++.+  
T Consensus       138 ~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~--------~~V~lLl~~g--  207 (782)
T KOG3676|consen  138 ERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDA--------ELVRLLLAAG--  207 (782)
T ss_pred             cccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccH--------HHHHHHHHcC--
Confidence            3356789999999873   4458899999998877765533   4599999999999999        9999999999  


Q ss_pred             cccccC-----------------------CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCCh
Q 027136           84 QTLARQ-----------------------DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHK  140 (227)
Q Consensus        84 ~~~~~~-----------------------~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  140 (227)
                      ++++.+                       -.+|..||..||-.++.+++++|++++++ ++.+|.+|+|.||..+..-..
T Consensus       208 ADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~  286 (782)
T KOG3676|consen  208 ADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVT  286 (782)
T ss_pred             CchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHH
Confidence            775421                       23577899999999999999999999999 799999999999999999889


Q ss_pred             HHHHHHHhhcCC--CccccCCCCccHHHHHHHhCcHHHHHHHHHh
Q 027136          141 NTFQYLLEVTHG--VDIYSGNDGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       141 ~~~~~Ll~~~~~--~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                      ++..+++++|++  .. ..++.|-|||-+|+..|..++.+.+++.
T Consensus       287 ~My~~~L~~ga~~l~~-v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  287 EMYDLALELGANALEH-VRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHhcCCCcccc-ccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999  77 8999999999999999999999999988

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=9.7e-18  Score=139.90  Aligned_cols=181  Identities=14%  Similarity=0.152  Sum_probs=144.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCC--------cccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136           17 WPLYRMIEKNDWRGVEDFVTNHP--------DALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus        17 ~~L~~a~~~g~~~~v~~ll~~~~--------~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      .++..+...+....+..++....        ...+.+ ...|.|+||.|.-..+...     .+++..|++.. |.-++.
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~-----n~la~~LL~~~-p~lind  175 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGH-----NELARVLLEIF-PKLIND  175 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhH-----HHHHHHHHHHh-HHHhhh
Confidence            77888888888888777765542        233334 5679999999987543311     18899999887 333442


Q ss_pred             C----CCCCCcHHHHHHhcCCHHHHHHHHHcCCCcccc---------CC--------------CCCChHHHHHHHcCChH
Q 027136           89 Q----DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNI---------RG--------------GLDTLPIHEAAYKGHKN  141 (227)
Q Consensus        89 ~----~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~---------~~--------------~~g~t~l~~a~~~~~~~  141 (227)
                      .    ...|.||||+|+.+.+.++|++|++.|+++ +.         .|              ..|..||..|+..++.+
T Consensus       176 ~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~e  254 (782)
T KOG3676|consen  176 IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPE  254 (782)
T ss_pred             hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHH
Confidence            2    346999999999999999999999999885 22         11              24789999999999999


Q ss_pred             HHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCC-CccccccccccHHHHHhhCC
Q 027136          142 TFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPT-IGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       142 ~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ++++|+++|++++ .+|.+|+|.||..+..-..++...+|+.++. ...++|++|.|||.+|++-+
T Consensus       255 ivrlLl~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  255 IVRLLLAHGADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             HHHHHHhcCCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence            9999999999999 9999999999999998888999999987554 25689999999999999843

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=5.4e-18  Score=109.30  Aligned_cols=81  Identities=25%  Similarity=0.350  Sum_probs=48.6

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHH
Q 027136           97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDV  176 (227)
Q Consensus        97 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~  176 (227)
                      ||+|++.++.+++++|++.+.+ ++.    |.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHHHHHHHcCCHHH
Confidence            4566666666666666665554 222    5566666666666666666666666665 555666666666666666666


Q ss_pred             HHHHHHh
Q 027136          177 ALDLLKL  183 (227)
Q Consensus       177 ~~~Ll~~  183 (227)
                      +++|++.
T Consensus        75 ~~~Ll~~   81 (89)
T PF12796_consen   75 VKLLLEH   81 (89)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            6666644

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=1.2e-17  Score=107.66  Aligned_cols=80  Identities=28%  Similarity=0.317  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhh
Q 027136           70 ATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV  149 (227)
Q Consensus        70 ~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  149 (227)
                      ..+++++|++.+  .+++.    |.||||+|+..|+.+++++|++++++ ++.++..|+||||+|+..++.+++++|+++
T Consensus         9 ~~~~~~~ll~~~--~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   81 (89)
T PF12796_consen    9 NLEILKFLLEKG--ADINL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEIVKLLLEH   81 (89)
T ss_dssp             THHHHHHHHHTT--STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHHHHHHHHT
T ss_pred             CHHHHHHHHHCc--CCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            468999999988  55554    88999999999999999999999999 799999999999999999999999999999


Q ss_pred             cCCCcccc
Q 027136          150 THGVDIYS  157 (227)
Q Consensus       150 ~~~~~~~~  157 (227)
                      |++++ .+
T Consensus        82 g~~~~-~~   88 (89)
T PF12796_consen   82 GADVN-IR   88 (89)
T ss_dssp             TT-TT-SS
T ss_pred             CCCCC-Cc
Confidence            99987 54

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=5.8e-17  Score=110.63  Aligned_cols=123  Identities=27%  Similarity=0.298  Sum_probs=111.7

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDE   91 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~   91 (227)
                      +..|.||||.|+..|+.+.++.+++.+... ... +..|.+|+|.|+..+..        +++++|++.+  ..++..+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~-~~~g~~~l~~a~~~~~~--------~~~~~ll~~~--~~~~~~~~   71 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAK-DNDGRTPLHLAAKNGHL--------EIVKLLLEKG--ADVNARDK   71 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-Ccc-CCCCCcHHHHHHHcCCH--------HHHHHHHHcC--CCccccCC
Confidence            467999999999999999999999988643 344 78899999999999999        9999999999  67888888


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHH
Q 027136           92 HGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL  147 (227)
Q Consensus        92 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  147 (227)
                      .+.||+|+|+..++.+++++|+..+.+ .+..+..+.||+++|...++.+++++|+
T Consensus        72 ~~~~~l~~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          72 DGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999999999877 6788899999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=5.7e-15  Score=111.09  Aligned_cols=127  Identities=21%  Similarity=0.232  Sum_probs=118.7

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCC-----HHHHHHHHHcCC--Cc
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGN-----LRALKVLVKCNP--NL  119 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~-----~~~~~~Ll~~~~--~~  119 (227)
                      +..+.++++.++..+..        +++++++..+  .+++.++..|.||||+|+..++     .++++.|++.++  +.
T Consensus        70 ~~~~~~~~~~~~~~~~~--------~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~  139 (235)
T COG0666          70 DLDGRLPLHSAASKGDD--------KIVKLLLASG--ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV  139 (235)
T ss_pred             CccccCHHHHHHHcCcH--------HHHHHHHHcC--CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC
Confidence            55678999999999999        9999999999  8889999999999999999999     999999999999  54


Q ss_pred             cccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhC
Q 027136          120 TNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH  184 (227)
Q Consensus       120 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~  184 (227)
                      .+.++..|.||||+|+..|+.++++.|++.|++++ ..+..|.|+++.|+..++.+++..++...
T Consensus       140 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         140 NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN-SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc-ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            67789999999999999999999999999999999 88999999999999999999999999763

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.66  E-value=1e-15  Score=94.80  Aligned_cols=100  Identities=17%  Similarity=0.244  Sum_probs=72.8

Q ss_pred             HHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHH
Q 027136           54 IFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHE  133 (227)
Q Consensus        54 L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  133 (227)
                      +.|++++|..        +-++..+..+  .+++..- .|++|||+|+..|.++++++|+..+++ ++.+|++|.|||-.
T Consensus         6 ~~W~vkNG~~--------DeVk~~v~~g--~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLs   73 (117)
T KOG4214|consen    6 VAWNVKNGEI--------DEVKQSVNEG--LNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLS   73 (117)
T ss_pred             HhhhhccCcH--------HHHHHHHHcc--ccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHH
Confidence            4566777777        6677666666  5555433 567788888888888888888888777 57778888888888


Q ss_pred             HHHcCChHHHHHHHhhcCCCccccCCCCccHHH
Q 027136          134 AAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLL  166 (227)
Q Consensus       134 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  166 (227)
                      |+..||.+++++|++.|++.. .+..+|.+.+.
T Consensus        74 AvwEGH~~cVklLL~~GAdrt-~~~PdG~~~~e  105 (117)
T KOG4214|consen   74 AVWEGHRDCVKLLLQNGADRT-IHAPDGTALIE  105 (117)
T ss_pred             HHHHhhHHHHHHHHHcCcccc-eeCCCchhHHh
Confidence            888888888888888777777 66666666543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.61  E-value=6.3e-15  Score=91.36  Aligned_cols=103  Identities=17%  Similarity=0.126  Sum_probs=92.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHH
Q 027136           96 ALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYD  175 (227)
Q Consensus        96 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~  175 (227)
                      -+.|+.++|..+-|+-.+..+.+ ++..- .|++|||+|+-+|+.+++++|+..|++++ .++++|-|||-.|++.|+..
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n-Vn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN-VNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc-HHHHh-CCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcHHHHHHHHhhHH
Confidence            46789999999999999999977 45443 79999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHhCCCCccccccccccHHHHH
Q 027136          176 VALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       176 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      ++++||++ +++..++..+|.+.+..+
T Consensus        82 cVklLL~~-GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQN-GADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHc-CcccceeCCCchhHHhhc
Confidence            99999987 666678889998887654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.60  E-value=6.7e-16  Score=132.57  Aligned_cols=193  Identities=16%  Similarity=0.067  Sum_probs=146.1

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV   81 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~   81 (227)
                      ++.+.+..-+|-+.+|||-.|...|-+++|..++..+.+.....-.+-|.+||.+|...|+.        .....|++.+
T Consensus       844 l~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~--------~at~~ll~~g  915 (2131)
T KOG4369|consen  844 LNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ--------AATLSLLQPG  915 (2131)
T ss_pred             HHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc--------HHHHHHhccc
Confidence            45666667778888888888888888888888888886433222234578899999999998        8888888888


Q ss_pred             CccccccCC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccc-cCC
Q 027136           82 DPQTLARQD-EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIY-SGN  159 (227)
Q Consensus        82 ~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~  159 (227)
                        .++|..- .+.+|+|-+|+..|..+++.+||....+ ...+.+.|.|||+.++..|.+++-++|+..|++.+-. .-.
T Consensus       916 --sdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~  992 (2131)
T KOG4369|consen  916 --SDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPN  992 (2131)
T ss_pred             --chhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCC
Confidence              6776543 3567889999999999999999999888 6888889999999999999999999999999886510 122


Q ss_pred             CCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          160 DGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       160 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      -..|+|-+++..|+...+..|+.. .+-..++|++|.|+|++|+..+
T Consensus       993 T~dtalti~a~kGh~kfv~~lln~-~atv~v~NkkG~T~Lwla~~Gg 1038 (2131)
T KOG4369|consen  993 TWDTALTIPANKGHTKFVPKLLNG-DATVRVPNKKGCTVLWLASAGG 1038 (2131)
T ss_pred             cCCccceeecCCCchhhhHHhhCC-ccceecccCCCCcccchhccCC
Confidence            235667777777777777777743 4455677777777777776543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.58  E-value=2e-15  Score=129.76  Aligned_cols=176  Identities=18%  Similarity=0.158  Sum_probs=143.8

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc-CCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR-QDEHG   93 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~   93 (227)
                      -.|+|-.||..|+-+.+++++.++. .+..+ ++.|.+||-+|+-.||.        .+|+.|++..  ++++. .|+.+
T Consensus       757 ~~t~LT~acaggh~e~vellv~rga-niehr-dkkgf~plImaatagh~--------tvV~~llk~h--a~veaQsdrtk  824 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGA-NIEHR-DKKGFVPLIMAATAGHI--------TVVQDLLKAH--ADVEAQSDRTK  824 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcc-ccccc-ccccchhhhhhcccCch--------HHHHHHHhhh--hhhhhhccccc
Confidence            3588999999999999999998876 44466 88899999999999999        9999999998  77774 46778


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCcc-ccCCCCccHHHHHHHhC
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI-YSGNDGARVLLLLIAAN  172 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~a~~~~  172 (227)
                      .|+|.+||..|+.+++++|+..+++ ...++-...|||..|...|..+++..|+..|+.++- .-.+.|-.||.+|..+|
T Consensus       825 dt~lSlacsggr~~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmng  903 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNG  903 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcc
Confidence            8999999999999999999999988 577888889999999999999999999999977661 23566788888888888


Q ss_pred             cHHHHHHHHHhCCCCccccccccccHHHHHh
Q 027136          173 LYDVALDLLKLHPTIGRDSIDSRRIVLNKLA  203 (227)
Q Consensus       173 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  203 (227)
                      +.+..+.||+.+..+......+.+|+|.+|.
T Consensus       904 h~~at~~ll~~gsdiNaqIeTNrnTaltla~  934 (2131)
T KOG4369|consen  904 HQAATLSLLQPGSDINAQIETNRNTALTLAL  934 (2131)
T ss_pred             ccHHHHHHhcccchhccccccccccceeecc
Confidence            8888888887755544333445566666554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=1.1e-13  Score=104.07  Aligned_cols=125  Identities=22%  Similarity=0.231  Sum_probs=114.5

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcC-----ccccchhHHHHHHHHHhcCCcc---
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELL-----VDVESDEATCLLDKLASKVDPQ---   84 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~-----~~~~~~~~~~~~~~Ll~~~~~~---   84 (227)
                      ..+.++++.++..++...++.++..+.+. +.+ +..|.||||+|+..++     .        ++++.|++.+  +   
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~g~t~l~~a~~~~~~~~~~~--------~~~~~ll~~g--~~~~  138 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLASGADV-NAK-DADGDTPLHLAALNGNPPEGNI--------EVAKLLLEAG--ADLD  138 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccc-cCCCCcHHHHHHhcCCcccchH--------HHHHHHHHcC--CCCC
Confidence            34779999999999999999888888744 566 9999999999999999     8        9999999999  6   


Q ss_pred             ccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhc
Q 027136           85 TLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT  150 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  150 (227)
                      ..+.++..|.||||+|+..|+.++++.|+..+++ ++..+..|.|++++|+..++.+++..++..+
T Consensus       139 ~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CccccCCCCCchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            5667799999999999999999999999999999 6888999999999999999999999999865

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.52  E-value=5.6e-14  Score=81.44  Aligned_cols=54  Identities=26%  Similarity=0.295  Sum_probs=26.9

Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHH
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLL  181 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  181 (227)
                      |.||||+|+..|+.+++++|++.|.+++ .++.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            3455555555555555555555555555 55555555555555555555555553

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.51  E-value=1.2e-13  Score=119.10  Aligned_cols=107  Identities=19%  Similarity=0.157  Sum_probs=95.2

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      ..|+.|+..|+.+.+++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCcH
Confidence            358889999999999999999999 79999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHh------CCCCccccccccccHHHHHh
Q 027136          175 DVALDLLKL------HPTIGRDSIDSRRIVLNKLA  203 (227)
Q Consensus       175 ~~~~~Ll~~------~~~~~~~~~~~g~t~l~~a~  203 (227)
                      +++++|++.      .++.....+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999976      24455566777777766554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.50  E-value=1.5e-13  Score=118.51  Aligned_cols=105  Identities=14%  Similarity=0.117  Sum_probs=95.6

Q ss_pred             HHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHH
Q 027136           53 TIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIH  132 (227)
Q Consensus        53 ~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  132 (227)
                      .|+.|+..|+.        ++++.|++.+  ++++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||
T Consensus        85 ~L~~aa~~G~~--------~~vk~LL~~G--adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh  153 (664)
T PTZ00322         85 ELCQLAASGDA--------VGARILLTGG--ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLE  153 (664)
T ss_pred             HHHHHHHcCCH--------HHHHHHHHCC--CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence            47889999999        9999999999  89999999999999999999999999999999999 7999999999999


Q ss_pred             HHHHcCChHHHHHHHhh-------cCCCccccCCCCccHHHHHH
Q 027136          133 EAAYKGHKNTFQYLLEV-------THGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus       133 ~a~~~~~~~~~~~Ll~~-------~~~~~~~~~~~g~t~L~~a~  169 (227)
                      +|+..++.+++++|+.+       +++.+ ..+..|.+|+..+.
T Consensus       154 ~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~-~~~~~g~~~~~~~~  196 (664)
T PTZ00322        154 LAEENGFREVVQLLSRHSQCHFELGANAK-PDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHCCcHHHHHHHHhCCCcccccCCCCC-ccccCCCCccchhh
Confidence            99999999999999998       77777 67777777765443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=1.1e-13  Score=80.17  Aligned_cols=54  Identities=31%  Similarity=0.490  Sum_probs=45.9

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHH
Q 027136           93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL  147 (227)
Q Consensus        93 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  147 (227)
                      |.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67999999999999999999999999 7999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=4e-14  Score=82.54  Aligned_cols=46  Identities=26%  Similarity=0.343  Sum_probs=14.5

Q ss_pred             ccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHH
Q 027136          121 NIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLL  167 (227)
Q Consensus       121 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  167 (227)
                      +.+|..|.||||+|+..|+.+++++|+..|++++ .++..|+||||+
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~-~~d~~G~Tpl~~   55 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN-AKDKDGQTPLHY   55 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC-CCcCCCCCHHHh
Confidence            4444444444444444444444444444444444 444444444443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=8.7e-14  Score=81.10  Aligned_cols=55  Identities=18%  Similarity=0.036  Sum_probs=32.1

Q ss_pred             HHhhc-CCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHH
Q 027136          146 LLEVT-HGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       146 Ll~~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      |++.| .+++ .++..|.||||+|+..|+.+++++|+ ..+.+.+.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n-~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVN-AQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCc-CcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            46667 6777 99999999999999999999999999 66888899999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=5.8e-13  Score=106.81  Aligned_cols=104  Identities=15%  Similarity=0.193  Sum_probs=83.0

Q ss_pred             HHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHH
Q 027136           98 FLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVA  177 (227)
Q Consensus        98 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  177 (227)
                      .-|+.-|.+++|+-.+..-.+ +...+..|.|+||-|+..||.+||+||++.|+++| ..|.+||||||.|+..++..++
T Consensus       555 LDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhhcCchHHH
Confidence            345566888888888877666 56777888888888888888888888888888888 8888888888888888888888


Q ss_pred             HHHHHhCCCCccccccccccHHHHHh
Q 027136          178 LDLLKLHPTIGRDSIDSRRIVLNKLA  203 (227)
Q Consensus       178 ~~Ll~~~~~~~~~~~~~g~t~l~~a~  203 (227)
                      +.|++.++++...+-.++.|+..-..
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCe  658 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCE  658 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcc
Confidence            88888888877666677788776543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.41  E-value=3.1e-12  Score=95.59  Aligned_cols=120  Identities=20%  Similarity=0.254  Sum_probs=106.9

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc-CCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR-QDEHG   93 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~   93 (227)
                      -..||..++-.|+.+....||+... .++.. |.+|.+||..|+..|+.        +++++|++.+  +++|. ++..+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr-~vn~~-D~sGMs~LahAaykGnl--------~~v~lll~~g--aDvN~~qhg~~   79 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVR-QVNQR-DPSGMSVLAHAAYKGNL--------TLVELLLELG--ADVNDKQHGTL   79 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhh-hhhcc-CCCcccHHHHHHhcCcH--------HHHHHHHHhC--CCcCccccccc
Confidence            4589999999999999999998743 45566 99999999999999999        9999999999  88885 46678


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHH
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL  147 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  147 (227)
                      .|||+.|+.+|+.++.++|++.|+. +...+.-|.|+-.+|+.-|+-+++..+-
T Consensus        80 YTpLmFAALSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   80 YTPLMFAALSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             ccHHHHHHHcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999999999999999999 7889999999999999999988877554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=1.3e-12  Score=104.79  Aligned_cols=120  Identities=17%  Similarity=0.122  Sum_probs=82.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHH
Q 027136           18 PLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTAL   97 (227)
Q Consensus        18 ~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L   97 (227)
                      .|.-|+..|.+++|+.++.+-. +.... +..|.|+||-|+..||.        +||++|++.+  +++|..|.+|+|||
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~-DpSqp-NdEGITaLHNAiCaghy--------eIVkFLi~~g--anVNa~DSdGWTPL  620 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVT-DPSQP-NDEGITALHNAICAGHY--------EIVKFLIEFG--ANVNAADSDGWTPL  620 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhc-CCCCC-CccchhHHhhhhhcchh--------HHHHHHHhcC--CcccCccCCCCchh
Confidence            3456677777777777776643 23223 66777777777777777        7777777777  77777777777777


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHH--HcCChHHHHHHHhh
Q 027136           98 FLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAA--YKGHKNTFQYLLEV  149 (227)
Q Consensus        98 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~  149 (227)
                      |.|+...+..+++.|++.|+.+....-.++.|+..-+-  ..|..++.++|...
T Consensus       621 HCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  621 HCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            77777777777777777777655555556667665543  33566777777543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=3.8e-12  Score=95.18  Aligned_cols=120  Identities=19%  Similarity=0.208  Sum_probs=109.6

Q ss_pred             CccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCCh
Q 027136           50 GSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTL  129 (227)
Q Consensus        50 g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  129 (227)
                      ...||.-++..+..        +-...|++..  .+++..|..|.++|..|+..|+.++++.|++.++++-..++..+.|
T Consensus        12 ~~~~Lle~i~Kndt--------~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YT   81 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDT--------EAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYT   81 (396)
T ss_pred             hhhHHHHHHccCcH--------HHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccccccc
Confidence            36789999999999        8888888887  7899999999999999999999999999999999965567888999


Q ss_pred             HHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHH
Q 027136          130 PIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDL  180 (227)
Q Consensus       130 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  180 (227)
                      |||.|+..|+.++.++|++.|+.+. ..+.-|+|+-.+|+--|+.+++..+
T Consensus        82 pLmFAALSGn~dvcrllldaGa~~~-~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   82 PLMFAALSGNQDVCRLLLDAGARMY-LVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             HHHHHHHcCCchHHHHHHhccCccc-cccchhhhHHHHHHHhcchHHHHHH
Confidence            9999999999999999999999998 8999999999999999998887655

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.99  E-value=2.9e-09  Score=86.80  Aligned_cols=118  Identities=19%  Similarity=0.140  Sum_probs=55.9

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHH
Q 027136           19 LYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALF   98 (227)
Q Consensus        19 L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~   98 (227)
                      +..|+..+++-.++.....++... .+ +.+..+.||+|+.-|+.        ++++|+++++.+..++..+..|.|+||
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll-~~-~~~~~sllh~a~~tg~~--------eivkyildh~p~elld~~de~get~lh  939 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLL-IQ-GPDHCSLLHYAAKTGNG--------EIVKYILDHGPSELLDMADETGETALH  939 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceE-ee-CcchhhHHHHHHhcCCh--------HHHHHHHhcCCHHHHHHHhhhhhHHHH
Confidence            344445555444444433333222 22 34444555555555555        555555555544444444444555555


Q ss_pred             HHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHH
Q 027136           99 LCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL  147 (227)
Q Consensus        99 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  147 (227)
                      .|+..++..+..+|++.++. +...|..|.||-.-|-..|+.++.-+|-
T Consensus       940 kaa~~~~r~vc~~lvdagas-l~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  940 KAACQRNRAVCQLLVDAGAS-LRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHHhcchHHHHHHHhcchh-heecccCCCChHHHHHhcCCchHHHHHh
Confidence            55555555555555555544 2444444555554444444444444443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.91  E-value=8e-10  Score=93.51  Aligned_cols=95  Identities=19%  Similarity=0.240  Sum_probs=71.0

Q ss_pred             HHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC-CCCChHHHHHHHcCChHHHHHHHhhcCC
Q 027136           74 LDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG-GLDTLPIHEAAYKGHKNTFQYLLEVTHG  152 (227)
Q Consensus        74 ~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  152 (227)
                      ++-+++..|....+++|..|+++||+++..+..++++||+++|.+ +..+| ..|+||||-|..+|+++++-.|+.+|..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            343333333344677888888888888888888888888888888 45554 4488888888888888888888888888


Q ss_pred             CccccCCCCccHHHHHHH
Q 027136          153 VDIYSGNDGARVLLLLIA  170 (227)
Q Consensus       153 ~~~~~~~~g~t~L~~a~~  170 (227)
                      .. .+|.+|..||..-++
T Consensus       112 L~-i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LR-IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eE-EecccCCCHHHHHhh
Confidence            77 888888888776554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.88  E-value=9.7e-09  Score=83.79  Aligned_cols=107  Identities=19%  Similarity=0.180  Sum_probs=93.6

Q ss_pred             HHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-ccccCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q 027136           74 LDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPN-LTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG  152 (227)
Q Consensus        74 ~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  152 (227)
                      ++.....|  .++-.++....+.||+|+..|+.++|++++++++. ++.+.+..|.|+||-|+..++..+.++|++.|+.
T Consensus       882 lqE~h~~g--g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas  959 (1004)
T KOG0782|consen  882 LQETHLNG--GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS  959 (1004)
T ss_pred             HHHHHhcC--CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh
Confidence            34444455  55677888889999999999999999999999764 3567889999999999999999999999999999


Q ss_pred             CccccCCCCccHHHHHHHhCcHHHHHHHHHh
Q 027136          153 VDIYSGNDGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       153 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                      +. ..+..|.||-.-|-..|+.+++.+|-.+
T Consensus       960 l~-ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  960 LR-KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             he-ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99 9999999999999999999999998765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.87  E-value=2.5e-09  Score=85.23  Aligned_cols=90  Identities=20%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             CccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCCh
Q 027136           50 GSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTL  129 (227)
Q Consensus        50 g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  129 (227)
                      +..++.+|+..|..        ..++.+.-.+  .+++.+|.+.+|+||.|+.-|+.+++++|+..-...+..+|+.|+|
T Consensus       506 ~~i~~~~aa~~GD~--------~alrRf~l~g--~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rt  575 (622)
T KOG0506|consen  506 TVINVMYAAKNGDL--------SALRRFALQG--MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRT  575 (622)
T ss_pred             chhhhhhhhhcCCH--------HHHHHHHHhc--ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCC
Confidence            34445555555555        5555555555  5555555555555555555555555555555422224455555555


Q ss_pred             HHHHHHHcCChHHHHHHHhh
Q 027136          130 PIHEAAYKGHKNTFQYLLEV  149 (227)
Q Consensus       130 ~l~~a~~~~~~~~~~~Ll~~  149 (227)
                      ||.-|..++|.+++++|-+.
T Consensus       576 PlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  576 PLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             cchHhHhcCcHHHHHHHHHH
Confidence            55555555555555555543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.86  E-value=1.8e-09  Score=91.50  Aligned_cols=95  Identities=21%  Similarity=0.109  Sum_probs=82.6

Q ss_pred             HHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCc
Q 027136          109 LKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIG  188 (227)
Q Consensus       109 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~  188 (227)
                      --++-..+.+..+++|..|+++||+++..+..++++||+.+|.++.......|+||||-|+..|+.+++..||.+ +...
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~-g~SL  112 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK-GRSL  112 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc-CCce
Confidence            344455555667899999999999999999999999999999999834456799999999999999999999966 6667


Q ss_pred             cccccccccHHHHHhh
Q 027136          189 RDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       189 ~~~~~~g~t~l~~a~~  204 (227)
                      .++|++|..||+..++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            8999999999999887

>PF13606 Ank_3: Ankyrin repeat

Probab=98.78  E-value=9.7e-09  Score=51.30  Aligned_cols=27  Identities=37%  Similarity=0.534  Sum_probs=13.7

Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCC
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGV  153 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~  153 (227)
                      |+||||+|++.|+.+++++|++.|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            445555555555555555555554444

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.77  E-value=4.7e-08  Score=78.55  Aligned_cols=93  Identities=18%  Similarity=0.155  Sum_probs=81.3

Q ss_pred             cCCCCCCc------HHHHHHhcCCHHHHHHHHHcCCCccccC-CCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCC
Q 027136           88 RQDEHGYT------ALFLCAGKGNLRALKVLVKCNPNLTNIR-GGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGND  160 (227)
Q Consensus        88 ~~~~~~~t------~L~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  160 (227)
                      .+|.+|.+      -||.+++.|+.+..-.|+..|++ .|.. -..|.||||+|++.|+..=+++|+-.|+++. ..+.+
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~-~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-a~d~~  199 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQ-ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-AQDSS  199 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccc-cCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC-CCCCC
Confidence            45555543      58999999999999999999998 5654 4569999999999999999999999999999 99999


Q ss_pred             CccHHHHHHHhCcHHHHHHHHH
Q 027136          161 GARVLLLLIAANLYDVALDLLK  182 (227)
Q Consensus       161 g~t~L~~a~~~~~~~~~~~Ll~  182 (227)
                      |.||+.+|-..|+.++.+.|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999998888875

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.75  E-value=1.7e-08  Score=80.65  Aligned_cols=91  Identities=20%  Similarity=0.157  Sum_probs=82.2

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhh-cCCCccccCCCCccHHHHHH
Q 027136           91 EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV-THGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        91 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~a~  169 (227)
                      ..+..++.+|+..|+...++.+.-.+.+ ++.+|...+|+||.|+..|+.+++++|++. +.+++ .++.+|+|||.-|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~-~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPD-PKDRWGRTPLDDAK  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCC-hhhccCCCcchHhH
Confidence            3456688999999999999999999999 699999999999999999999999999975 67788 99999999999999


Q ss_pred             HhCcHHHHHHHHHh
Q 027136          170 AANLYDVALDLLKL  183 (227)
Q Consensus       170 ~~~~~~~~~~Ll~~  183 (227)
                      ..++.+++++|-+.
T Consensus       582 ~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEA  595 (622)
T ss_pred             hcCcHHHHHHHHHH
Confidence            99999999977654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.74  E-value=1.8e-08  Score=81.47  Aligned_cols=106  Identities=17%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             cHHHHHHhcCCHHHHHH-HHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCc
Q 027136           95 TALFLCAGKGNLRALKV-LVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANL  173 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~-Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~  173 (227)
                      .|+|+++.....+-+.. |...-...+...|..|.||||.|+..|+...++.|+..|+++. .+++.|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-ccccccccHHHHHHHcCC
Confidence            45888887666554444 3333233367788889999999999999999999999999988 899999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccccccccHHHH
Q 027136          174 YDVALDLLKLHPTIGRDSIDSRRIVLNK  201 (227)
Q Consensus       174 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  201 (227)
                      .+++..++.++......+-..+...|-.
T Consensus       101 ~q~i~~vlr~~~~q~~~~~~~~~p~ll~  128 (560)
T KOG0522|consen  101 EQIITEVLRHLKYQAWEKWERRLPRLLA  128 (560)
T ss_pred             HHHHHHHHHHhHHHHHHHHHhcchHHHH
Confidence            8888888876444333333334444433

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.73  E-value=5.8e-08  Score=78.01  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=76.9

Q ss_pred             HHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHH
Q 027136           53 TIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD-EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPI  131 (227)
Q Consensus        53 ~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  131 (227)
                      .||.+++.|+.        ++.=.|+..|  +++|..+ ..|.||||.|++.|...-+++|+-+|++ ++..|.+|.||+
T Consensus       136 QLhasvRt~nl--------et~LRll~lG--A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~  204 (669)
T KOG0818|consen  136 QLHSSVRTGNL--------ETCLRLLSLG--AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPV  204 (669)
T ss_pred             HHHHHhhcccH--------HHHHHHHHcc--cccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHH
Confidence            58999999999        9888899999  8888776 4789999999999999999999999999 799999999999


Q ss_pred             HHHHHcCChHHHHHHHh
Q 027136          132 HEAAYKGHKNTFQYLLE  148 (227)
Q Consensus       132 ~~a~~~~~~~~~~~Ll~  148 (227)
                      .+|-..||-++.+.|++
T Consensus       205 ~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  205 DYARQGGHHELAERLVE  221 (669)
T ss_pred             HHHHhcCchHHHHHHHH
Confidence            99999999877766654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.71  E-value=1.2e-07  Score=80.94  Aligned_cols=151  Identities=17%  Similarity=0.013  Sum_probs=111.7

Q ss_pred             ccHHHHHHHhcCccccchhHHHHHHHHHhcCCc--cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCC
Q 027136           51 SSTIFHAIVELLVDVESDEATCLLDKLASKVDP--QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDT  128 (227)
Q Consensus        51 ~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~--~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  128 (227)
                      .--.-.|+..|+.        ..++..++....  .++|..|.-|+++|++|..+.+.+++++|+++....        .
T Consensus        26 e~~fL~a~E~gd~--------~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------g   89 (822)
T KOG3609|consen   26 EKGFLLAHENGDV--------PLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------G   89 (822)
T ss_pred             hHHHHHHHHcCCh--------HHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------c
Confidence            3456789999999        888877776523  557789999999999999999999999999987652        4


Q ss_pred             hHHHHHHHcCChHHHHHHHhhcCCCc---------cccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHH
Q 027136          129 LPIHEAAYKGHKNTFQYLLEVTHGVD---------IYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVL  199 (227)
Q Consensus       129 t~l~~a~~~~~~~~~~~Ll~~~~~~~---------~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  199 (227)
                      .+|-+|+..|..++++.++.+.....         ...-..+.||+.+|+..+++|+++.||+++..+....+..-.-.-
T Consensus        90 dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~  169 (822)
T KOG3609|consen   90 DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKT  169 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchH
Confidence            57999999999999999998755431         134456799999999999999999999997766544333333333


Q ss_pred             HHHhhCCCcCCCCCcchh
Q 027136          200 NKLAQKPYAFASGSRLGR  217 (227)
Q Consensus       200 ~~a~~~~~~~~~~~~~~~  217 (227)
                      ....+..+++.|.+++..
T Consensus       170 C~~~~~~dslhS~srin~  187 (822)
T KOG3609|consen  170 CKRETVTDSLHSLSRVNI  187 (822)
T ss_pred             hhhccccCCcchHHHHHH
Confidence            333343344444444443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.68  E-value=3.7e-08  Score=50.55  Aligned_cols=28  Identities=29%  Similarity=0.533  Sum_probs=13.6

Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCc
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVD  154 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  154 (227)
                      |.||||+|+..|+.+++++|++.|++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            4444444444444444444444444444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.66  E-value=9.2e-08  Score=77.52  Aligned_cols=89  Identities=25%  Similarity=0.373  Sum_probs=74.9

Q ss_pred             cHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHH
Q 027136           52 STIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPI  131 (227)
Q Consensus        52 t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  131 (227)
                      -|+|+++.....+       ++.+.|... ....++..|..|.||||+|+..|+.+.++.|+..+++ +..+|+.|++||
T Consensus        22 ~~lh~~~~~~~~~-------sl~~el~~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L   92 (560)
T KOG0522|consen   22 KPLHWAVVTTDSD-------SLEQELLAK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPL   92 (560)
T ss_pred             cccchhhhccchh-------hHHHHHhhh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHH
Confidence            4589988887771       444444444 3467888898999999999999999999999999999 699999999999


Q ss_pred             HHHHHcCChHHHHHHHhh
Q 027136          132 HEAAYKGHKNTFQYLLEV  149 (227)
Q Consensus       132 ~~a~~~~~~~~~~~Ll~~  149 (227)
                      |.|+..|+.+++..++.+
T Consensus        93 ~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   93 HEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            999999999988877765

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=7.4e-08  Score=48.08  Aligned_cols=29  Identities=10%  Similarity=0.092  Sum_probs=26.4

Q ss_pred             CCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccc
Q 027136           49 PGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLA   87 (227)
Q Consensus        49 ~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~   87 (227)
                      +|+||||+||+.|+.        +++++|++.+  ++++
T Consensus         1 ~G~T~Lh~A~~~g~~--------e~v~~Ll~~g--advn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNI--------EIVKYLLEHG--ADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCH--------HHHHHHHHcC--CCCC
Confidence            589999999999999        9999999999  6664

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.56  E-value=3e-07  Score=75.32  Aligned_cols=93  Identities=18%  Similarity=0.175  Sum_probs=69.7

Q ss_pred             HHHHHHHhcCccccchhHHHHHHHHHhcCCccccc--cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChH
Q 027136           53 TIFHAIVELLVDVESDEATCLLDKLASKVDPQTLA--RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLP  130 (227)
Q Consensus        53 ~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~--~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  130 (227)
                      .|.-|+.....        ..+-+|+.++....++  ..+..|.|+||+|++.|+..+.++|+=++.+ +..+|..|+|+
T Consensus       627 qLl~A~~~~Dl--------~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~  697 (749)
T KOG0705|consen  627 QLLRAVAAEDL--------QTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTA  697 (749)
T ss_pred             HHHHHHHHHHH--------HHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchh
Confidence            35556666666        7777777777444444  3455678888888888888888888888888 57788888888


Q ss_pred             HHHHHHcCChHHHHHHHhhcCCCc
Q 027136          131 IHEAAYKGHKNTFQYLLEVTHGVD  154 (227)
Q Consensus       131 l~~a~~~~~~~~~~~Ll~~~~~~~  154 (227)
                      |.||-..|..+++..|+.+|....
T Consensus       698 l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhhHhhcccHHHHHHHHHcCCCcc
Confidence            888888888888888888876633

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.56  E-value=1.1e-07  Score=48.76  Aligned_cols=32  Identities=13%  Similarity=0.098  Sum_probs=29.2

Q ss_pred             CCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC
Q 027136           49 PGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD   90 (227)
Q Consensus        49 ~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~   90 (227)
                      +|.||||+|+..|+.        +++++|++.+  ++++.+|
T Consensus         1 dG~TpLh~A~~~~~~--------~~v~~Ll~~g--a~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHP--------DIVKLLLKHG--ADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCH--------HHHHHHHHTT--SCTTCBC
T ss_pred             CcccHHHHHHHHHHH--------HHHHHHHHCc--CCCCCCC
Confidence            589999999999999        9999999999  8887765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.52  E-value=4.4e-07  Score=74.39  Aligned_cols=87  Identities=20%  Similarity=0.137  Sum_probs=74.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCc-c--ccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhC
Q 027136           96 ALFLCAGKGNLRALKVLVKCNPNL-T--NIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAAN  172 (227)
Q Consensus        96 ~L~~a~~~~~~~~~~~Ll~~~~~~-~--~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~  172 (227)
                      -|--|+...++..+-+|+.++... .  ...+..|.|+||.|++.|+..+.++|+=+|++.. ..+..|+|+|.+|-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchhhhhHhhcc
Confidence            355677778888899999986542 1  1245668999999999999999999999999999 99999999999999999


Q ss_pred             cHHHHHHHHHh
Q 027136          173 LYDVALDLLKL  183 (227)
Q Consensus       173 ~~~~~~~Ll~~  183 (227)
                      ..+++..|++.
T Consensus       706 sqec~d~llq~  716 (749)
T KOG0705|consen  706 SQECIDVLLQY  716 (749)
T ss_pred             cHHHHHHHHHc
Confidence            99999999976

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.44  E-value=3.1e-07  Score=80.02  Aligned_cols=126  Identities=15%  Similarity=0.068  Sum_probs=98.6

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhc-CCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASK-VDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGG  125 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  125 (227)
                      ...|.+.+|+++..+..        -+++.+++. +  ......|..|...+|. |..++.++.-+++......++++|.
T Consensus       571 ~~r~~lllhL~a~~lya--------wLie~~~e~~~--~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~  639 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYA--------WLIEKVIEWAG--SGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR  639 (975)
T ss_pred             CCcchHHHHHHHHHhHH--------HHHHHHhcccc--cCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccC
Confidence            56688999999999999        888888886 4  3445566667777777 5567777777777665444789999


Q ss_pred             CCChHHHHHHHcCChHHHHHHHhhcCCCcc-----ccCCCCccHHHHHHHhCcHHHHHHHHHh
Q 027136          126 LDTLPIHEAAYKGHKNTFQYLLEVTHGVDI-----YSGNDGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       126 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                      .|+||||+|+..|+..++..|...|+...-     .....|.|+-.+|-.+|+..+..+|-+.
T Consensus       640 ~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  640 NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999999999987765321     3456689999999999998888777543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.35  E-value=2.5e-06  Score=73.17  Aligned_cols=127  Identities=17%  Similarity=0.074  Sum_probs=101.6

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCc---ccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPD---ALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      ..+..+......|+..|+...|+..++....   .++.. |.-|+++|+.|+.+.+.        ++.++|++..  ...
T Consensus        20 ~~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nenl--------e~~eLLl~~~--~~~   88 (822)
T KOG3609|consen   20 ADLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNENL--------ELQELLLDTS--SEE   88 (822)
T ss_pred             cccchhhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceecccccccH--------HHHHHHhcCc--ccc
Confidence            3445566778899999999999999988543   23334 67799999999999999        9999999997  222


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCcc---------ccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCc
Q 027136           87 ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLT---------NIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVD  154 (227)
Q Consensus        87 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~---------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  154 (227)
                             ..+|..|...|..++++.++.+.....         ...-.-+.||+..|+..++.|+++.|+..|+.+.
T Consensus        89 -------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   89 -------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             -------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                   347889999999999999999854310         1233447899999999999999999999998754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.23  E-value=4.6e-06  Score=65.36  Aligned_cols=73  Identities=23%  Similarity=0.282  Sum_probs=65.0

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  169 (227)
                      .-|..||+.|..+.++.|++.|.+ +|.+|+....||.+|+.-||..++++|+++|+--. ...-.|..+++-|.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-RDTFDGDRCHYGAL  110 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-ccccCcchhhhhhh
Confidence            358899999999999999999999 79999999999999999999999999999998876 66677888866554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.20  E-value=2.7e-06  Score=74.31  Aligned_cols=87  Identities=23%  Similarity=0.289  Sum_probs=78.2

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHH
Q 027136           91 EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIA  170 (227)
Q Consensus        91 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~  170 (227)
                      ..|.++||.|+..+..-++++|++.+.+ ++..|..|.+|+|.+...|+......|++.|+..+ ..+..|.+||.+|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~-a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPN-AFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccccc-ccCccCcchhhHHhh
Confidence            4578999999999999999999999999 79999999999999999999999999999999999 999999999999987


Q ss_pred             hCcHHHHHH
Q 027136          171 ANLYDVALD  179 (227)
Q Consensus       171 ~~~~~~~~~  179 (227)
                      ..+.+++-.
T Consensus       732 ~~~~d~~~l  740 (785)
T KOG0521|consen  732 AANADIVLL  740 (785)
T ss_pred             hccccHHHH
Confidence            755444433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.03  E-value=2.1e-05  Score=56.00  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=54.4

Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG  152 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  152 (227)
                      .+++.+|..|+|++..|+.-|..+.+.+|+.++..-+...|..|.+++.+|-+.|..+.+..|.+...+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            457788888888888888888888888888888433678888888888888888888888888775433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.03  E-value=8.1e-06  Score=71.53  Aligned_cols=126  Identities=17%  Similarity=0.068  Sum_probs=94.2

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDE   91 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~   91 (227)
                      +..|.+.+|.++..+....++.+++-..... ...+..|...+|+|+ .++.        +..-+++... +..++++|.
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~--------ewA~ll~~~~-~~ai~i~D~  639 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGY--------EWAFLPISAD-GVAIDIRDR  639 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCC--------ceeEEEEeec-ccccccccC
Confidence            4568899999999999999999998622122 233778888899944 4555        4544454433 267899999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCc-----cccCCCCCChHHHHHHHcCChHHHHHHHh
Q 027136           92 HGYTALFLCAGKGNLRALKVLVKCNPNL-----TNIRGGLDTLPIHEAAYKGHKNTFQYLLE  148 (227)
Q Consensus        92 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  148 (227)
                      .|+||||+|+..|+..++..|++.+++.     +......|.|+-..|...|+..+.-+|-+
T Consensus       640 ~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  640 NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            9999999999999999999999876542     22344558899999998888777666643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.96  E-value=8.5e-06  Score=71.31  Aligned_cols=88  Identities=18%  Similarity=0.147  Sum_probs=79.6

Q ss_pred             CCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCC
Q 027136           48 APGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLD  127 (227)
Q Consensus        48 ~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  127 (227)
                      ..|.|+||.|+..+..        .+.++|++.+  ++++..|..|++|+|.+...|+...+..+++++++ .+..+..|
T Consensus       654 ~~~~s~lh~a~~~~~~--------~~~e~ll~~g--a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~  722 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDS--------GAVELLLQNG--ADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDG  722 (785)
T ss_pred             hcccchhhhhhccchH--------HHHHHHHhcC--CcchhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccC
Confidence            5679999999999999        9999999999  88999999999999999999999999999999998 79999999


Q ss_pred             ChHHHHHHHcCChHHHHHH
Q 027136          128 TLPIHEAAYKGHKNTFQYL  146 (227)
Q Consensus       128 ~t~l~~a~~~~~~~~~~~L  146 (227)
                      .+|+.+|....+.+++-++
T Consensus       723 ~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  723 KLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cchhhHHhhhccccHHHHH
Confidence            9999999777655554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.92  E-value=3.6e-05  Score=60.48  Aligned_cols=72  Identities=19%  Similarity=0.078  Sum_probs=61.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHH
Q 027136          128 TLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNK  201 (227)
Q Consensus       128 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  201 (227)
                      .--|..|++.|+.+.+++|++.|.++| ..+....+||.+|+-.|+.++++.||++ |++...-.-+|.-++.-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLen-GAiC~rdtf~G~RC~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLEN-GAICSRDTFDGDRCHYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHc-CCcccccccCcchhhhh
Confidence            446889999999999999999999999 9999999999999999999999999988 55554444567666543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.84  E-value=5.8e-05  Score=53.85  Aligned_cols=66  Identities=17%  Similarity=0.133  Sum_probs=61.2

Q ss_pred             cccCCCCCChHHHHHHHcCChHHHHHHHhhc-CCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCC
Q 027136          120 TNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT-HGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPT  186 (227)
Q Consensus       120 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  186 (227)
                      ++.+|.+|+||++.|+..|..+.+.+|+.+| +.+. ..+..|.+++.+|-..|..+++..|.+....
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg-v~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG-VTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCccccc-ccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            6889999999999999999999999999999 6677 9999999999999999999999999887544

>smart00248 ANK ankyrin repeats

Probab=96.92  E-value=0.0018  Score=30.70  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=7.7

Q ss_pred             hHHHHHHHcCChHHHHHHHh
Q 027136          129 LPIHEAAYKGHKNTFQYLLE  148 (227)
Q Consensus       129 t~l~~a~~~~~~~~~~~Ll~  148 (227)
                      ||+|+|+..++.++++.|+.
T Consensus         4 ~~l~~~~~~~~~~~~~~ll~   23 (30)
T smart00248        4 TPLHLAAENGNLEVVKLLLD   23 (30)
T ss_pred             CHHHHHHHcCCHHHHHHHHH
Confidence            33333333333333333333

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.50  E-value=0.0067  Score=28.57  Aligned_cols=26  Identities=38%  Similarity=0.597  Sum_probs=24.0

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCC
Q 027136           93 GYTALFLCAGKGNLRALKVLVKCNPN  118 (227)
Q Consensus        93 ~~t~L~~a~~~~~~~~~~~Ll~~~~~  118 (227)
                      +.+|+|+++..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            67999999999999999999998775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.45  E-value=0.085  Score=37.92  Aligned_cols=133  Identities=15%  Similarity=0.056  Sum_probs=84.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHH
Q 027136           18 PLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTAL   97 (227)
Q Consensus        18 ~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L   97 (227)
                      .+..|++.+-++++++.-+.....     -.-.++.+..||+..+.        ++|+|+-..-     ...  +-.+.+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qky--------diV~WI~qnL-----~i~--~~~~iF  108 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKY--------DIVKWIGQNL-----HIY--NPEDIF  108 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccc--------cHHHHHhhcc-----CCC--Cchhhh
Confidence            456677888888887765443211     12346778889999999        9999985443     111  123456


Q ss_pred             HHHHhcCCHHHH----HHHHHcCCCccccCCCCCC-----hHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           98 FLCAGKGNLRAL----KVLVKCNPNLTNIRGGLDT-----LPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        98 ~~a~~~~~~~~~----~~Ll~~~~~~~~~~~~~g~-----t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                      .+|....+.++.    +++..+...    .+....     .-|..|+..|-...+--.+++|.+++       .++|..|
T Consensus       109 dIA~~~kDlsLyslGY~l~~~~~~~----~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~A  177 (192)
T PF03158_consen  109 DIAFAKKDLSLYSLGYKLLFNRMMS----EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQA  177 (192)
T ss_pred             hhhhhccchhHHHHHHHHHHhhccc----ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHH
Confidence            777777777652    122222111    111111     22567888888888877788887766       3888899


Q ss_pred             HHhCcHHHHHHHH
Q 027136          169 IAANLYDVALDLL  181 (227)
Q Consensus       169 ~~~~~~~~~~~Ll  181 (227)
                      +..++-.+..+++
T Consensus       178 v~ynhRkIL~yfi  190 (192)
T PF03158_consen  178 VKYNHRKILDYFI  190 (192)
T ss_pred             HHhhHHHHHHHhh
Confidence            9988888888776

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.44  E-value=0.0062  Score=49.98  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=48.5

Q ss_pred             HHHHHHHhcCCccccc----cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHH
Q 027136           72 CLLDKLASKVDPQTLA----RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAA  135 (227)
Q Consensus        72 ~~~~~Ll~~~~~~~~~----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  135 (227)
                      ..+++|.+.+...+..    ..+..-.|+||+|+.+|..+++.++|+.+++ +.++|..|.||..++.
T Consensus       405 ~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  405 DSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            5677777776222221    2334456899999999999999999999988 7899999999988876

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.30  E-value=0.007  Score=49.68  Aligned_cols=63  Identities=11%  Similarity=-0.083  Sum_probs=46.1

Q ss_pred             hHHHHHHHhhcCCCc-----cccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHh
Q 027136          140 KNTFQYLLEVTHGVD-----IYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLA  203 (227)
Q Consensus       140 ~~~~~~Ll~~~~~~~-----~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  203 (227)
                      ...+++|.+++...|     ...+..-.|+||+|+..|.-+++.+||+.+ ++..++|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            456677777666543     022334578888888888888888888774 778888888888887765

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.68  E-value=0.46  Score=35.50  Aligned_cols=44  Identities=18%  Similarity=0.169  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhc-CCCcc--ccCCCCccHHHHHHHhCcHHHHHHHHHh
Q 027136          140 KNTFQYLLEVT-HGVDI--YSGNDGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       140 ~~~~~~Ll~~~-~~~~~--~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                      ..+++.+++.| .+++.  .+.+.|.|-|.-|+..++.+++..||..
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~  276 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKY  276 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHc
Confidence            45566666655 23331  3455677777777777777777777744

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.55  E-value=0.37  Score=36.00  Aligned_cols=48  Identities=10%  Similarity=0.064  Sum_probs=27.9

Q ss_pred             CHHHHHHHHHcCCCcccc---CCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q 027136          105 NLRALKVLVKCNPNLTNI---RGGLDTLPIHEAAYKGHKNTFQYLLEVTHG  152 (227)
Q Consensus       105 ~~~~~~~Ll~~~~~~~~~---~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  152 (227)
                      +..+++..+.+|-..+|.   +-+.|.|-|.-|.++++.+++.+|+++|+.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            445555555555332222   344566667777777777777777766654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.38  E-value=0.14  Score=31.39  Aligned_cols=49  Identities=14%  Similarity=0.040  Sum_probs=34.4

Q ss_pred             hHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCC
Q 027136          129 LPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       129 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      .-+..|+..|+.++++.+++.+ .+       ....+..|+...+.++++||++++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~-------~~~~l~~AI~~H~n~i~~~l~~~y~   56 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP-------DNDCLEYAIKSHNNEIADWLIENYN   56 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc-------HHHHHHHHHHHhhHHHHHHHHHhcC
Confidence            3467788888888888777543 11       1456778888888888888887743

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.37  E-value=0.42  Score=29.28  Aligned_cols=49  Identities=12%  Similarity=-0.056  Sum_probs=41.1

Q ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC
Q 027136           16 YWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV   81 (227)
Q Consensus        16 ~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~   81 (227)
                      ...+..|+.+|+.++++.+++...  .    +   ..++..|+...+.        +++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~--~----~---~~~l~~AI~~H~n--------~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK--P----D---NDCLEYAIKSHNN--------EIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc--c----H---HHHHHHHHHHhhH--------HHHHHHHHhc
Confidence            467899999999999999986552  1    1   4579999999999        9999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.39  E-value=2  Score=31.14  Aligned_cols=113  Identities=14%  Similarity=0.080  Sum_probs=75.8

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHH----HHHhcCCccccccC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLD----KLASKVDPQTLARQ   89 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~----~Ll~~~~~~~~~~~   89 (227)
                      ..++....||+..+.++|+|+-+.-.       -.+-.+.+-+|....+.        ++..    .+++...+..-..+
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qnL~-------i~~~~~iFdIA~~~kDl--------sLyslGY~l~~~~~~~~~~~d~  139 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQNLH-------IYNPEDIFDIAFAKKDL--------SLYSLGYKLLFNRMMSEHNEDP  139 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhccC-------CCCchhhhhhhhhccch--------hHHHHHHHHHHhhcccccccCH
Confidence            45678889999999999999843321       12224556678888887        5432    33443311100001


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHh
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE  148 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  148 (227)
                      ...-...|..|+..|-..-+...+++|.+. +      .+.|..|+.+.+.+++.+++.
T Consensus       140 ~~ll~~hl~~a~~kgll~F~letlkygg~~-~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  140 TSLLTQHLEKAAAKGLLPFVLETLKYGGNV-D------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-c------HHHHHHHHHhhHHHHHHHhhc
Confidence            111124678999999999999999998872 2      389999999999999988864

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-04

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 90  DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
           D++G T L L A  G L  ++VL+K   ++ N        P+H AAY GH    + LL+ 
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLK- 93
Query: 150 THGVDI 155
            HG D+
Sbjct: 94  -HGADV 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	5e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	4e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	4e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 4/86 (4%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D  G+T L   A   N++  K LV+                    E   +G+    Q+L
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 147 LEVTHGVDIYSGNDGARVLLLLIAAN 172
                   +   N G    L      
Sbjct: 159 YG--VQEKMGIMNKGVIYALWDYEPQ 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            ++ G TAL      G+   +K LV+   N N  +  G   T P+H AA   +    ++L
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG--WT-PLHCAASCNNVQVCKFL 122

Query: 147 LEVTHGVDI--YSGNDGARVLLLLIAAN 172
           +E   G  +   + +D            
Sbjct: 123 VE--SGAAVFAMTYSDMQTAADKCEEME 148

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 8/73 (10%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           +  G  +L         +     +              L    + +++ +G  +  Q ++
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP----LPLALLLDSSLEGEFDLVQRII 57

Query: 148 EVTHGVDIYSGND 160
                 D    ND
Sbjct: 58  Y--EVDDPSLPND 68

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           +      L   + +G    ++ ++    +P+L N  G   T  +H A   GH    ++L+
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG--IT-ALHNAVCAGHTEIVKFLV 90

Query: 148 EVTHGVDIYSG-NDG 161
           +   GV++ +  +DG
Sbjct: 91  Q--FGVNVNAADSDG 103

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 51.0 bits (123), Expect = 7e-09
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
           +         L   A  G    +++L+    +    +  G   T P+H AA  GH    +
Sbjct: 18  SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG--ST-PLHLAARNGHLEVVK 74

Query: 145 YLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLK 182
            LLE   G D+ + +   +    +   N  +   ++L+
Sbjct: 75  LLLE--AGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.4 bits (127), Expect = 8e-09
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 68  DEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGG 125
                 LD   + ++     + D+HG++ L     +G    +++L+      N+ N    
Sbjct: 19  VAVRLWLDNTENDLN-----QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD- 72

Query: 126 LDTLPIHEAAYKGHKNTFQYLLEVTHGVDI 155
            DT P+H AA  GH++  Q LL+  +  DI
Sbjct: 73  -DT-PLHLAASHGHRDIVQKLLQ--YKADI 98

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
                  +F    +GN  A+++ +    N  N        P+H A  +G     + L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM- 60

Query: 150 THGVDIYSGNDG 161
             G  I   N G
Sbjct: 61  -RGARINVMNRG 71

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            +    T L L A  G+   ++ L++   + N  N  G  +  P+H A + G     + L
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG--NV-PLHYACFWGQDQVAEDL 124

Query: 147 LEVTHGVDIYSGND 160
           +   +G  +   N 
Sbjct: 125 VA--NGALVSICNK 136

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.0 bits (113), Expect = 6e-07
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            +EHG   L      G  +  + LV      ++ N  G  +  P+ +A     +   +  
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG--EM-PVDKAKAPLRELLRERA 157

Query: 147 LEVTHGVDI 155
            +   G ++
Sbjct: 158 EK--MGQNL 164

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            +  G   + +    G+ +  ++L+     PN  +      T P+H+AA +G  +T   L
Sbjct: 41  LNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATL--TRPVHDAAREGFLDTLVVL 97

Query: 147 LEVTHGVDI 155
                G  +
Sbjct: 98  HR--AGARL 104

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
                   L   A +G +  ++ L++   +PN  N  G     PI      G     + L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG--RR-PIQVMMM-GSAQVAELL 63

Query: 147 LEVTHGVDIYSGNDGARVLLLLIAA 171
           L   HG +    +       +  AA
Sbjct: 64  LL--HGAEPNCADPATLTRPVHDAA 86

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 89  QDEHGYT-ALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
            D    T  +   A +G L  L VL +     ++ +  G     P+  A  +GH++  +Y
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWG--RL-PVDLAEEQGHRDIARY 129

Query: 146 LLEVTHGVD 154
           L       D
Sbjct: 130 LHA--ATGD 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 70  ATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLD 127
              L     +      L   + +G+T L L +  G L  +++LV    + N      G  
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG-R 152

Query: 128 TLPIHEAAYKGHKNTFQYLLEVTHGVDI 155
           T  +H A    + +    LL+   G D+
Sbjct: 153 T-ALHLAVDLQNPDLVSLLLK--CGADV 177

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           Q+    T L L          + L+   C+P L + RG  +T P+H A  +G   +   L
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG--NT-PLHLACEQGCLASVGVL 97

Query: 147 LEVTHGVDIYSGND 160
            +       +  + 
Sbjct: 98  TQ--SCTTPHLHSI 109

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 11/73 (15%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK------CNPNLTNIRGGLDTLPIHEAAYKGHKNT 142
             E G + L L            +++         N  N      T P+H A        
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ--QT-PLHLAVITNQPEI 60

Query: 143 FQYLLEVTHGVDI 155
            + LL    G D 
Sbjct: 61  AEALLG--AGCDP 71

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
           A++  +G TAL L     N   + +L+KC  + N    +G   + P      +      Q
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG--YS-PYQLTWGRPSTRIQQ 201

Query: 145 YLLEVTHGVDI 155
            L +    ++ 
Sbjct: 202 QLGQ--LTLEN 210

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           + +   T L   A  G+   +K+L++   NPNL    G   T P+H AA +GH  T   L
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG--HT-PLHIAAREGHVETVLAL 132

Query: 147 LEVTHGVDIYSGND 160
           LE            
Sbjct: 133 LE--KEASQACMTK 144

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
               G+T L + A +G++  +  L++   +      +G   T P+H AA  G     + L
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG--FT-PLHVAAKYGKVRVAELL 165

Query: 147 LEVTHGVDIYS-GNDGARVLLLLIAANLYDVALDLLK 182
           LE        + G +G   L + +  N  D+   LL 
Sbjct: 166 LE--RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.7 bits (125), Expect = 4e-08
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
               GYT L + +  GN++ +K L++   + N     G   + P+H+AA +GH +    L
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG--YS-PLHQAAQQGHTDIVTLL 363

Query: 147 LEVTHGVDIYSGND 160
           L+  +G      + 
Sbjct: 364 LK--NGASPNEVSS 375

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.7 bits (125), Expect = 5e-08
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            ++ G T L L A +G++    VL+K     + T   G   T P+H A++ G+    ++L
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG--YT-PLHVASHYGNIKLVKFL 330

Query: 147 LEVTHGVDI 155
           L+  H  D+
Sbjct: 331 LQ--HQADV 337

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.3 bits (124), Expect = 6e-08
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
             ++G T L +     NL  +K+L+    +P+     G   T P+H AA +      + L
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG--YT-PLHIAAKQNQVEVARSL 231

Query: 147 LEVTHGVDIYSGND 160
           L+  +G    + + 
Sbjct: 232 LQ--YGGSANAESV 243

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 8e-08
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
             E G T L + +  G+L  +K L++   +PN++N++   +T P+H AA  GH    +YL
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ET-PLHMAARAGHTEVAKYL 66

Query: 147 LEVTHGVDI 155
           L+  +   +
Sbjct: 67  LQ--NKAKV 73

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
              +GYT L + A +  +   + L++   + N  +++G   T P+H AA +GH      L
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG--VT-PLHLAAQEGHAEMVALL 264

Query: 147 LEVTHGVDIYSGND 160
           L      +   GN 
Sbjct: 265 LS--KQANGNLGNK 276

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 88  RQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
            + + GY+ L   A +G+   + +L+K   +PN  +  G   T P+  A   G+ +    
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG--TT-PLAIAKRLGYISVTDV 395

Query: 146 LLEVT-HGVDIYSGND 160
           L  VT     +   + 
Sbjct: 396 LKVVTDETSFVLVSDK 411

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            + +G   +      G+ R  ++L+     PN  +      T P+H+AA +G  +T   L
Sbjct: 41  PNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATL--TRPVHDAAREGFLDTLVVL 97

Query: 147 LEVTHGVDI 155
                G  +
Sbjct: 98  HR--AGARL 104

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
            E     L   A +G +  ++ L++   NPN  N  G     PI      G     + LL
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG--RR-PIQVMMM-GSARVAELLL 64

Query: 148 EVTHGVDIYSGNDGARVLLLLIAA 171
              HG +    +       +  AA
Sbjct: 65  L--HGAEPNCADPATLTRPVHDAA 86

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 89  QDEHGYT-ALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
            D    T  +   A +G L  L VL +     ++ +  G    LP+  A   GH++  +Y
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG---RLPVDLAEELGHRDVARY 129

Query: 146 LLEVTHGVDI 155
           L         
Sbjct: 130 LRA--AAGGT 137

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLV--KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
                 + + +    G++  + +L+    + N  N         I  A         Q L
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL--FIPDIKLAIDNKDIEMLQAL 214

Query: 147 LEVTHGVDIYSGN 159
            +  + ++IYS N
Sbjct: 215 FK--YDINIYSAN 225

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
            D HG++A +      N+R +  L+       N+    +  P+H+AA        + LL 
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLLEN-EF-PLHQAATLEDTKIVKILLF 83

Query: 149 VTHGVDIYSGND 160
              G+D    +D
Sbjct: 84  --SGLDDSQFDD 93

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D+ G TAL+     GN++ +K+ VK          + G  T   + A      +   Y 
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG-KTGWKT-SFYHAVMLNDVSIVSYF 148

Query: 147 LEVTHGVDIYSGNDG 161
           L        +     
Sbjct: 149 LS--EIPSTFDLAIL 161

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 92  HGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
                L   A   + + +K+L+    + +  + +G  +T  ++ A   G+  T +  ++ 
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG--NT-ALYYAVDSGNMQTVKLFVK- 116

Query: 150 THGVDI-YSGNDGAR 163
                + + G  G +
Sbjct: 117 -KNWRLMFYGKTGWK 130

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 19/143 (13%), Positives = 34/143 (23%), Gaps = 35/143 (24%)

Query: 58  IVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--C 115
            ++ L              L      + L  Q++ G TAL L A  G    ++ L     
Sbjct: 24  FLDFL--------------LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 116 NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI--------------YSGNDG 161
              +    G   T  +H A           LL+                      + +  
Sbjct: 70  GVLVAERGG--HT-ALHLACRVRAHTCACVLLQ--PRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 162 ARVLLLLIAANLYDVALDLLKLH 184
                +    N  +      +  
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDW 147

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 86  LARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTF 143
                E G TAL L     +   L  L+         +++  L    +H AA  G  +T 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 144 QYLLEVTHGVDI 155
           + L     G  +
Sbjct: 62  EKLYA--AGAGV 71

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 7/76 (9%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
             +   G T L L         L++L+K   +P      G   T P+  A  + +    +
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG--RT-PLGSALLRPNPILAR 242

Query: 145 YLLEVTHGVDIYSGND 160
            L    HG        
Sbjct: 243 LLRA--HGAPEPEDGG 256

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 12/103 (11%)

Query: 56  HAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVL--- 112
           H    +L+           D   +    Q+     +  +    + +        +     
Sbjct: 91  HTCACVLLQPRPSHPRDASDTYLT----QSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146

Query: 113 VKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI 155
            +      N  G   T P+H A         + L +   G D+
Sbjct: 147 WRLQLEAENYDG--HT-PLHVAVIHKDAEMVRLLRD--AGADL 184

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 7/62 (11%), Positives = 14/62 (22%), Gaps = 5/62 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +   G T L     + N    ++L                 + P   +      +     
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK--LS-PCSSSGSDSDSDNRDEG 277

Query: 147 LE 148
            E
Sbjct: 278 DE 279

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D+     + + A KG    ++ L++   +P + N  G   T  +H A   G  +T +YL
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG--CT-ALHLACKFGCVDTAKYL 72

Query: 147 LEVTHGVDI 155
                G   
Sbjct: 73  AS--VGEVH 79

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 11/111 (9%), Positives = 25/111 (22%), Gaps = 12/111 (10%)

Query: 58  IVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--C 115
           + + L+          L +     +  T+          +   A       L++L +   
Sbjct: 259 LTKELLQKTDV----FLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314

Query: 116 NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI-YSGNDGARVL 165
               +   G        +   K      +  L       +       AR  
Sbjct: 315 EVVRSLNTG--AG-GAVKRKKKAAPAVKRMKLA--PSAPVRTRSRSRARSS 360

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 10/89 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
           Q+  G TAL L    G +   K L        ++  G    PIH A      +    L+E
Sbjct: 49  QNRFGCTALHLACKFGCVDTAKYLASVGEVH-SLWHG-QK-PIHLAVMANKTDLVVALVE 105

Query: 149 VTHGVDIYSGNDGARVLLLLIAANLYDVA 177
                       G     LL   +  +V 
Sbjct: 106 --GAK-----ERGQMPESLLNECDEREVN 127

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC-------NPNLTNIRGGLDTLPIHEAAYKGHKN 141
           +D+   T L       N  AL +++           +  N +G  ++  +H A     ++
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG--NS-HLHWAILINWED 225

Query: 142 TFQYLLEVTHGVDI 155
                +E   G+D+
Sbjct: 226 VAMRFVE--MGIDV 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 14/79 (17%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG----GLDTL--------PIHEAAY 136
           +D      L+L      +   K L++              G   L         +  AA 
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299

Query: 137 KGHKNTFQYLLEVTHGVDI 155
              +   Q L E     ++
Sbjct: 300 PSKQEVLQLLQE--KLDEV 316

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 89  QDEHGYTALFLCA--GKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
           +   G TAL  C   G   L  +K+LV+   +P   +     +T P+  A    ++    
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD--ET-PLMRAMEFRNREALD 190

Query: 145 YLLEVT---HGVDI-YSGNDG 161
            +++       + + Y+   G
Sbjct: 191 LMMDTVPSKSSLRLDYANKQG 211

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.5 bits (122), Expect = 6e-08
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           D++    +      G     + LV+   +    +      T  +H AA     +  +Y +
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKEN--VT-LLHWAAINNRIDLVKYYI 62

Query: 148 EVTHGVDI 155
               G  +
Sbjct: 63  S--KGAIV 68

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.8 bits (115), Expect = 6e-07
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 89  QDEHGYTALFLCAGKGN-LRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
            D++G T L   A + + +   ++L+    + NL +     +T  +H A   G+      
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK-NT-ALHWAVLAGNTTVISL 195

Query: 146 LLEVTHGVDIYSGND 160
           LLE   G ++ + N 
Sbjct: 196 LLE--AGANVDAQNI 208

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
               +   T L     +G+L  +  L+K   +P+L +  G   +  IH AA  GH +   
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG--CS-CIHLAAQFGHTSIVA 126

Query: 145 YLLEVTHGVDI 155
           YL+    G D+
Sbjct: 127 YLIA--KGQDV 135

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D+   T L   A    +  +K  +      +         T P+H A  +GH +    L
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN-ST-PLHWATRQGHLSMVVQL 95

Query: 147 LEVTHGVDI 155
           ++  +G D 
Sbjct: 96  MK--YGADP 102

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
                H  TAL      GN   + +L++   N +  NI+G  ++  +  A  + +     
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKG--ES-ALDLAKQRKNVWMIN 227

Query: 145 YLLEVTHGVDI 155
           +L E       
Sbjct: 228 HLQE--ARQAK 236

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.7 bits (120), Expect = 6e-08
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 73  LLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLP 130
            L K  + V+     + DE G+T L   +  G +  ++ L++   +P++       ++  
Sbjct: 21  HLRKGDNLVN-----KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER--ES-A 72

Query: 131 IHEAAYKGHKNTFQYLLEVTHGVDI 155
           +  A+  G+ +    LLE    VDI
Sbjct: 73  LSLASTGGYTDIVGLLLE--RDVDI 95

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D +G T L       +++ ++ L+    +       G   T P+  A   G++   Q +
Sbjct: 98  YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG--YT-PMDLAVALGYRKVQQVI 154

Query: 147 LEVTHGVDIYSGN 159
               H + ++  N
Sbjct: 155 EN--HILKLFQSN 165

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 93  GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG 152
              ++   A +G L  LK  ++   NL N        P+  A+  G   T ++LLE   G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE--WG 59

Query: 153 VDIYSGND 160
            D +    
Sbjct: 60  ADPHILAK 67

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
             +   +AL L +  G    + +L++   + N+ +  GG  T P+  A    H    + L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG--T-PLLYAVRGNHVKCVEAL 121

Query: 147 LEVTHGVDIYSGND 160
           L    G D+ +  D
Sbjct: 122 LA--RGADLTTEAD 133

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            DE+G TAL   AG G+ + +++L +   + +  ++RGGL T  +H AA        + L
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL-T-ALHMAAGYVRPEVVEAL 129

Query: 147 LEVTHGVDI 155
           +E   G DI
Sbjct: 130 VE--LGADI 136

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
            R    G TAL + AG      ++ LV+   +  + + RG   T  +  A          
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERG--LT-ALELAREILKTTPKG 160

Query: 145 YLLEVTHGVDI 155
             ++   G  I
Sbjct: 161 NPMQ--FGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 7/69 (10%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +R    G     +    G+  +         ++       +T P   AA K  +     L
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-VSEY--ET-PWWTAARKADEQALSQL 63

Query: 147 LEVTHGVDI 155
           L      D+
Sbjct: 64  L---EDRDV 69

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.2 bits (121), Expect = 9e-08
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D+ G +AL   A   N+ A  VL+K   N ++ N R   +T P+  AA +G   T + L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE--ET-PLFLAAREGSYETAKVL 209

Query: 147 LEVTHGVDI 155
           L+  H  + 
Sbjct: 210 LD--HFANR 216

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           Q+    T LFL A +G+    KVL+    N ++T+       LP   A  + H +  + L
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD---RLPRDIAQERMHHDIVRLL 242

Query: 147 LEVTHGVDI 155
                    
Sbjct: 243 DL--EHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
            + D  G TAL L A      A K L++   + N+ +  G   T P+H A     +  FQ
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG--RT-PLHAAVSADAQGVFQ 107

Query: 145 YLLEVTHG 152
            L+   + 
Sbjct: 108 ILIR--NR 113

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
           QD  G T L            ++L++    + +     G   T P+  AA    +   + 
Sbjct: 86  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG--TT-PLILAARLAVEGMLED 142

Query: 146 LLEVTHGVDI 155
           L+      D+
Sbjct: 143 LIN--SHADV 150

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 88  RQDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
           R  + G TAL + A KG    LK+L++   + N+ +  G   T P+H AA+ G +   + 
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG--WT-PLHAAAHWGKEEACRI 250

Query: 146 LLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH 184
           L+E  +  D+ + N   +    +   ++     +L K  
Sbjct: 251 LVE--NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            +  G TAL       N+  +K LV+   N N  +  G     P+H AA  G+ +  +YL
Sbjct: 69  ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG--WI-PLHAAASCGYLDIAEYL 125

Query: 147 LEVTHGVDIYSGN-DG 161
           +    G  + + N +G
Sbjct: 126 IS--QGAHVGAVNSEG 139

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
            D+ G TAL+     G+   +++L        N  N  G  DT  +H AA+KG+ +  Q 
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLG--DT-ALHAAAWKGYADIVQL 158

Query: 146 LLEVTHGVDIYSGND 160
           LL    G      N 
Sbjct: 159 LLA--KGARTDLRNI 171

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           Q++ G TAL   A KG    +++L+      +L NI           A      +  +  
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK--KL-AFDMATNAACASLLKKK 192

Query: 147 LEVTHGVDIYSGNDGARV 164
                       N    +
Sbjct: 193 QG--TDAVRTLSNAEDYL 208

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
             +   T  +    KG      ++              D  P+HEAA +G+ +  +  L+
Sbjct: 41  ITDMSDTNWWKGTSKGRT---GLIPSNYVAEQAESI--DN-PLHEAAKRGNLSWLRECLD 94

Query: 149 VTHGVDI 155
             + V +
Sbjct: 95  --NRVGV 99

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            DE+G TAL   AG G+ + +++L +   + +  ++RGGL T  +H AA        + L
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL-T-ALHMAAGYVRPEVVEAL 130

Query: 147 LEVTHGVDI 155
           +E   G DI
Sbjct: 131 VE--LGADI 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
            R    G TAL + AG      ++ LV+   +  + + RG   T  +  A          
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERG--LT-ALELAREILKTTPKG 161

Query: 145 YLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLL 181
             ++   G  I        + +L      Y    +++
Sbjct: 162 NPMQ--FGRRI---GLEKVINVLEGQVFEYAEVDEIV 193

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 7/69 (10%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +R    G     +    G+  +         ++       +T P   AA K  +     L
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-VSEY--ET-PWWTAARKADEQALSQL 64

Query: 147 LEVTHGVDI 155
           L      D+
Sbjct: 65  L---EDRDV 70

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLV--KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D      L   A  G +   ++L+  KC+ +  NI G  D+ P+H AA +   +     
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG--DS-PLHIAARENRYDCVVLF 196

Query: 147 LEVTHGVDIYSGND 160
           L      D+   N 
Sbjct: 197 LS--RDSDVTLKNK 208

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.6 bits (117), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           + ++  + L   A  G++    +LV+   N +  +      T P+ EAA   H    +YL
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RT-PLMEAAENNHLEAVKYL 63

Query: 147 LEVTHGVDIYSGND 160
           ++   G  +   + 
Sbjct: 64  IK--AGALVDPKDA 75

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.4 bits (114), Expect = 7e-07
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 72  CLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTL 129
            LL      V+      QD+ G+T +       ++  +K+L+    + N+ +     +  
Sbjct: 95  YLLSNGQMDVN-----CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE--NI- 146

Query: 130 PIHEAAYKGHKNTFQYLLEVTHGVDIYSGND 160
            +H AA+ G  +  + LL      D+++ N 
Sbjct: 147 CLHWAAFSGCVDIAEILLA--AKCDLHAVNI 175

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
             E   T L   A   +L A+K L+K     +  +  G   T  +H AA KGH    QYL
Sbjct: 40  CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG--ST-CLHLAAKKGHYEVVQYL 96

Query: 147 LEVTHG 152
           L   +G
Sbjct: 97  LS--NG 100

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            + HG + L + A +     + + +    +  L N  G  +T P+  A+      +   +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEG--ET-PLQCASLNSQVWSALQM 229

Query: 147 LEVTHGVD 154
            +     D
Sbjct: 230 SK--ALQD 235

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           +  G T L + + KG++ +++ L++   +PN+ +  G   T P+HEA   GH    + LL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG--WT-PLHEACNHGHLKVVELLL 63

Query: 148 EVTHGVDI 155
           +  H   +
Sbjct: 64  Q--HKALV 69

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D  G+T L      G+L+ +++L++     N T  +   D+ P+H+AA  GH +  + L
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN--DS-PLHDAAKNGHVDIVKLL 95

Query: 147 LEVTHGVDIYSGN-DGARVLLLLIAANLYDVALDLLK 182
           L   +G    + N  G R +      ++  + L   K
Sbjct: 96  LS--YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           +E G TAL       N   +  L+    N N  +  G   T P+H AA          L+
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG--WT-PLHCAASCNDTVICMALV 107

Query: 148 EVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKL 183
           +  HG  I++                 +   D    
Sbjct: 108 Q--HGAAIFATTLSDGATAFEKCDPYREGYADCATY 141

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 88  RQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
             D HG+T L   A   +      LV+       T +  G       +   +G+ +   Y
Sbjct: 82  SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY 141

Query: 146 LLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH 184
           L +      +   N GA   L   +A   D    L    
Sbjct: 142 LAD--VEQSMGLMNSGAVYALWDYSAEFGDE---LSFRE 175

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
                +T LF     G+   + +L++   +    +    L + PIHEAA +GH      L
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES---DLAS-PIHEAARRGHVECVNSL 176

Query: 147 LEVTHGVDI 155
           +   +G +I
Sbjct: 177 IA--YGGNI 183

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
                ++ +   A  G+  +L+ L+      N+        + P+HEA   GH +  + L
Sbjct: 55  DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VS-PLHEACLGGHLSCVKIL 111

Query: 147 LEVTHGVDI 155
           L+  HG  +
Sbjct: 112 LK--HGAQV 118

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 18/99 (18%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
           +  H  T L+L         +K L++   ++ N   G D+ P+H       +     L++
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDS-PLHAVVRTASEELACLLMD 243

Query: 149 VTHGVDIYSGN-DG-------------ARVLLLLIAANL 173
              G D  + N +G             A++ L    A+L
Sbjct: 244 --FGADTQAKNAEGKRPVELVPPESPLAQLFLEREGASL 280

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D    T L L AG   +R +++L++   + +  +  G     P+H A   GH    + L
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG--LV-PLHNACSYGHYEVTELL 110

Query: 147 LEVTHGVDI 155
           L+  HG  +
Sbjct: 111 LK--HGACV 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +++   T L + A + +   ++VL K     N  +  G   T  +H AA  GH  T + L
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG--QT-ALHRAALAGHLQTCRLL 299

Query: 147 LEVTHGVDI 155
           L   +G D 
Sbjct: 300 LS--YGSDP 306

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D   +T L   A K  +    +L+    +P L N  G   +  +  A     +    Y 
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG--KS-AVDMAPTPELRERLTYE 176

Query: 147 LEVTHGVDIYSGNDGARVLLLLI 169
            +    +      D A+V   L 
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLA 199

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 26/113 (23%)

Query: 58  IVELLVDVES----------DEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKG--- 104
            +       S           +    L             +Q +   TAL          
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINF------KQPQSHETALHCAVASLHPK 225

Query: 105 NLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI 155
             +  ++L++   N N  N      T P+H AA + H +  + L +  HG  +
Sbjct: 226 RKQVAELLLRKGANVNEKNKDF--MT-PLHVAAERAHNDVMEVLHK--HGAKM 273

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 89  QDEHGYTALFLCAGKGNL-RALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
             E+    L   A  GN  + + +L     N + ++ R    T P+H AA        Q 
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRK--ST-PLHLAAGYNRVRIVQL 76

Query: 146 LLEVTHGVDI 155
           LL+  HG D+
Sbjct: 77  LLQ--HGADV 84

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            DE G+T L   A  G +  ++ L++   +P L       ++  +  A  KG+ +  + L
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR--ES-ALSLACSKGYTDIVKML 88

Query: 147 LEVTHGVDI 155
           L+   GVD+
Sbjct: 89  LD--CGVDV 95

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.4 bits (114), Expect = 4e-07
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
             +   +AL L   KG    +K+L+ C  + N  +  G   T P+  A +  H    + L
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG--GT-PLLYAVHGNHVKCVKML 121

Query: 147 LEVTHGVDI 155
           LE   G D 
Sbjct: 122 LE--SGADP 128

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.0 bits (113), Expect = 6e-07
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 92  HGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
               ++   A +G +  L   ++     N T+  G   T P+  AA  G     ++LL+ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEG--FT-PLMWAAAHGQIAVVEFLLQ- 57

Query: 150 THGVDIYSGND 160
            +G D      
Sbjct: 58  -NGADPQLLGK 67

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D +G T L       +++ +K+L++   +P +    G      +  A   G+++  Q +
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG--YN-SMDLAVALGYRSVQQVI 154

Query: 147 LEVTHGVDI 155
               H + +
Sbjct: 155 ES--HLLKL 161

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +       L     +   +  ++L       +  +  G  +T P++ A +       + L
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NT-PLNIAVHNNDIEIAKAL 58

Query: 147 LEVTHGVDI 155
           ++   G DI
Sbjct: 59  ID--RGADI 65

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
           Q+    +       +G    L  ++K    + N  N  GG     +  AA KGH +  + 
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG--N-ALIPAAEKGHIDNVKL 124

Query: 146 LLEVTHG-VDIYSGND 160
           LLE   G  DI   ND
Sbjct: 125 LLE--DGREDIDFQND 138

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           QDE G T + L A +G +  +  L++   +    +      T     A    H N     
Sbjct: 309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD--HT-ARQLAQANNHHNIVDIF 365

Query: 147 LEVTHGVDI 155
                  + 
Sbjct: 366 DR--CRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D    T L L       R +  L+K   +P + N      +  +H+AA         Y+
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE--RS-ALHQAAANRDFGMMVYM 218

Query: 147 LE-VTHGVDI 155
           L       DI
Sbjct: 219 LNSTKLKGDI 228

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 8/94 (8%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
             +         G GN             P           + +H  A  G     + + 
Sbjct: 58  QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPES---PIKLHTEA-AGSYAITEPIT 113

Query: 148 EVTHGVDIYSGNDGARVLLLLIAANLYDVALDLL 181
                V+I        VL  + + +  + + DL+
Sbjct: 114 R--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLI 145

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D +  T L +    G   A+  LV+        +I G   T  +  A         + L
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEG--ST-ALIWAVKNNRLGIAEKL 87

Query: 147 LEVTHGVDI 155
           L    G ++
Sbjct: 88  LS--KGSNV 94

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +  D++G     +   K   + L  L     N  +      T P+  A   G +N    L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLR----NYRDSYN--RT-PLMVACMLGMENAIDKL 54

Query: 147 LEVTHGVDI 155
           +E  +   +
Sbjct: 55  VE--NFDKL 61

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D  G TAL        L   + L+    N N  +  G   T P+  +   G+     +L
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG--KT-PLMWSIIFGYSEMSYFL 120

Query: 147 LEVTHGVDI 155
           LE  HG ++
Sbjct: 121 LE--HGANV 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.2 bits (98), Expect = 7e-05
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           ++  G T L + +  G    +K L++   + +  ++ G   T     A   G +   +  
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG--LT-AEASARIFGRQEVIKIF 186

Query: 147 LEV 149
            EV
Sbjct: 187 TEV 189

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.2 bits (111), Expect = 5e-07
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
            + G T L   A  G+   +K L+    + N  +  G  +T P+H AA  GH    + LL
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NT-PLHLAAKNGHAEIVKLLL 62

Query: 148 EVTHGVDI 155
               G D+
Sbjct: 63  A--KGADV 68

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           + + G T L L A  G+   +K+L+    + N  +  G  +T P H A   GH    + L
Sbjct: 38  RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG--NT-PEHLAKKNGHHEIVKLL 94

Query: 147 LEVTHGVDI 155
                G D+
Sbjct: 95  DA--KGADV 101

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 5e-07
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLV------KCNPNLTNIRGGLDTLPIHEAAYKGHKNT 142
            D HG TA  L     +   L+ L+        +    N  G   T  +H A     + T
Sbjct: 75  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG--LT-ALHVAVNTECQET 131

Query: 143 FQYLLEVTHGVDI 155
            Q LLE   G DI
Sbjct: 132 VQLLLE--RGADI 142

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 6e-07
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 88  RQDEHGYTALFLCAGKGNLRALKVLVK------CNPNLTNIRGGLDTLPIHEAAYKGHKN 141
           R DE G T L +   +GNL A+  LV          ++ N      T P+H A      +
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR--QT-PLHLAVITTLPS 60

Query: 142 TFQYLLEVTHGVDI 155
             + L+    G   
Sbjct: 61  VVRLLVT--AGASP 72

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
           A   + G + L       +L  +++L++   N N     G   +  +H A+ +G     +
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG--SS-ALHSASGRGLLPLVR 200

Query: 145 YLLEVTHGVDI 155
            L+    G D 
Sbjct: 201 TLVR--SGADS 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           Q   G +AL   +G+G L  ++ LV+   + +L N     DT P+  A  +   +  +  
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN--DT-PLMVARSRRVIDILRGK 235

Query: 147 LEVTHG 152
                 
Sbjct: 236 AT--RP 239

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 6e-07
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
                            G+L  +K  V    + N T   G     P+H AA  G     +
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGG--RK-PLHYAADCGQLEILE 57

Query: 145 YLLEVTHGVDI 155
           +LL    G DI
Sbjct: 58  FLLL--KGADI 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
             E G   L   A  G L  L+ L+    + N  +      T P+  A Y+GH +  + L
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH--IT-PLLSAVYEGHVSCVKLL 92

Query: 147 LEVTHGVDIYSG-NDGARVLLLLIAANLYDVALDLLK 182
           L    G D      DG        A +   +   LL+
Sbjct: 93  LS--KGADKTVKGPDGLTA---FEATDNQAI-KALLQ 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.8 bits (110), Expect = 7e-07
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D++G T L L A  G+L  +K+L++   + N  +  G   T P+H AA  GH    + L
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG--RT-PLHLAARNGHLEVVKLL 87

Query: 147 LEVTHGVDI 155
           LE   G D+
Sbjct: 88  LE--AGADV 94

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.4 bits (109), Expect = 1e-06
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 92  HGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
           +G T L L A  G+L  +K+L++   + N  +  G   T P+H AA  GH    + LLE 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG--RT-PLHLAARNGHLEVVKLLLE- 56

Query: 150 THGVDI 155
             G D+
Sbjct: 57  -AGADV 61

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D++G T L L A  G+L  +K+L++   + N  +  G   T P+H AA  GH    + L
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG--RT-PLHLAARNGHLEVVKLL 120

Query: 147 LEV 149
           LE 
Sbjct: 121 LEA 123

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 2/74 (2%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D+ G   L              L+    N NL +        P H A   G+    + L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

Query: 147 LEVTHGVDIYSGND 160
            +     D+    +
Sbjct: 92  YDRPLKPDLNKITN 105

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 88  RQDEHGYTALFLCAGKGNLRALKVLV----KCNPNLTNIRGGLDTLPIHEAAYKGHKNTF 143
             D+ G+T   +    GNL  +K L     K + N    +G   T  +H A  K      
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG--VT-CLHLAVGKKWFEVS 123

Query: 144 QYLLEVTHGVDI 155
           Q+L+E  +G  +
Sbjct: 124 QFLIE--NGASV 133

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
           +D+     L   A  G+L+ +++L     +  N +      P+  A  +GH +    L+E
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195

Query: 149 VTHGVDI 155
             +G + 
Sbjct: 196 -KYGAEY 201

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.4 bits (106), Expect = 9e-06
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
               G T L L  GK      + L++   +  + +        P+H AA  G     + L
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN--QI-PLHRAASVGSLKLIELL 159

Query: 147 LEVTHG 152
                G
Sbjct: 160 CG--LG 163

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.8 bits (110), Expect = 1e-06
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           Q+  G TAL      GN    + L+    NP+L +  G      IH+AA  G  +T Q L
Sbjct: 34  QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTG--FA-VIHDAARAGFLDTLQTL 89

Query: 147 LEVTHGVDI 155
           LE     D+
Sbjct: 90  LE--FQADV 96

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.9 bits (105), Expect = 7e-06
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
           +D  G   L L A +G+LR ++ LVK    N    N +G  DT     A   G       
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG--DT-ACDLARLYGRNEVVSL 155

Query: 146 LLEVTHG 152
           +    +G
Sbjct: 156 MQA--NG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.6 bits (99), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D  G+  +   A  G L  L+ L++   + N+ +  G  +  P+H AA +GH    ++L
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG--NL-PLHLAAKEGHLRVVEFL 122

Query: 147 LEVTHG 152
           ++  H 
Sbjct: 123 VK--HT 126

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
            E     L   A +G+L  L  L++   N N  N  G   T  +      G+    + LL
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RT-ALQVMKL-GNPEIARRLL 57

Query: 148 EVTHGVDI 155
               G + 
Sbjct: 58  L--RGANP 63

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 67  SDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRG 124
             E   LL +     D       +  G TAL +    G+      L+K   +PN+ +  G
Sbjct: 15  VQEVRRLLHRELVHPD-----ALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSG 68

Query: 125 GLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI 155
              + P+H+AA  G  +T + L+E  HG D+
Sbjct: 69  --TS-PVHDAARTGFLDTLKVLVE--HGADV 94

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           QD  G + +   A  G L  LKVLV+   + N+ +  G     PIH A  +GH     +L
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG--AL-PIHLAVQEGHTAVVSFL 120

Query: 147 LE 148
             
Sbjct: 121 AA 122

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK-CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
            D  G   + L   +G+   +  L    + +  + RG   T P+  A  +G ++    L 
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARG--LT-PLELALQRGAQDLVDILQ 153

Query: 148 E 148
            
Sbjct: 154 G 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLV---KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
           + E G T L L   K +L  ++ L+       N T+  G   T  +  A     K   + 
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG--KT-ALLLAVELKLKKIAEL 271

Query: 146 LLEVTHGVDI 155
           L +   G   
Sbjct: 272 LCK--RGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 93  GYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT 150
               L       ++  ++ L++   N N     GG  T P+H A     ++  + LL   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-T-PLHNAVQMSREDIVELLLR-- 60

Query: 151 HGVDIYSGND 160
           HG D      
Sbjct: 61  HGADPVLRKK 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           + ++G T   L A  G+++ LK+ +    + N  +  G   T    EAA  G     ++L
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG--FT-AFMEAAVYGKVKALKFL 124

Query: 147 LEVTHGVDI 155
            +   G ++
Sbjct: 125 YK--RGANV 131

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
            +++E G+T L           +++L++   +P L    G   T P   AA  G     +
Sbjct: 33  FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--AT-PFLLAAIAGSVKLLK 89

Query: 145 YLLEVTHGVDI 155
             L    G D+
Sbjct: 90  LFLS--KGADV 98

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC------NPNLTNIRGGLDTLPIHEAAYKGHKNT 142
            D  G  AL       +   ++ +         + N+   RG   T P+  A  K H   
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG--KT-PLILAVEKKHLGL 234

Query: 143 FQYLLEVTHGVDI 155
            Q LLE    ++I
Sbjct: 235 VQRLLE-QEHIEI 246

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTL-------PIHEAAYKGH 139
            D +G+TA    A  G ++ALK L K   N NL                  + +AA KGH
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 140 KNTFQYLLEVTHGVDIYSGND 160
               + LL+   G D+ + ++
Sbjct: 161 VEVLKILLD-EMGADVNACDN 180

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 12/86 (13%)

Query: 82  DPQTLARQDEHGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKG 138
             +   R  + G TAL   A KG++  LK+L+     + N  +  G      +  A    
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG--RN-ALIHALLSS 193

Query: 139 HKNTF----QYLLEVTHGVDIYSGND 160
             +        LL+  HG D+    +
Sbjct: 194 DDSDVEAITHLLLD--HGADVNVRGE 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           Q+    T LFL A +G+    KVL+    N ++T+       LP   A  + H +  + L
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD---RLPRDIAQERMHHDIVRLL 210

Query: 147 LEVTHGVDI 155
            E  + +  
Sbjct: 211 DE--YNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D+ G +AL   A   N+ A  VL+K   N ++ N R   +T P+  AA +G   T + L
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE--ET-PLFLAAREGSYETAKVL 177

Query: 147 LEVTHGVDI 155
           L+  H  + 
Sbjct: 178 LD--HFANR 184

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
           QD  G T L            ++L++    + +     G   T P+  AA    +   + 
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG--TT-PLILAARLAVEGMLED 110

Query: 146 LLEVTHGVDI 155
           L+      D+
Sbjct: 111 LIN--SHADV 118

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.9 bits (105), Expect = 9e-06
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 87  ARQDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
            + D  G TAL L A      A K L++   + N+ +  G   T P+H A     +  FQ
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG--RT-PLHAAVSADAQGVFQ 75

Query: 145 YLLEVTHG 152
            L+   + 
Sbjct: 76  ILIR--NR 81

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK-------CNPNLTNIRGGLDTLPIHEAAYKGHKN 141
           +   G TAL + A   NL A  VL++                G   T  +H A    + N
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEG--QT-ALHIAVINQNVN 89

Query: 142 TFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY 174
             + LL    G  + +   G+           Y
Sbjct: 90  LVRALLA--RGASVSARATGSVFHYRPHNLIYY 120

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 15/108 (13%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTL----------PIHEAAY 136
           +   G TAL +     N+  ++ L+    + +                     P+  AA 
Sbjct: 71  ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC 130

Query: 137 KGHKNTFQYLLEVTHGVDIYSG-NDGARVLLLLIAANLYDVALDLLKL 183
            G +   + L+E  HG DI +  + G  VL +LI       A  +  L
Sbjct: 131 VGSEEIVRLLIE--HGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 13/77 (16%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC------NPNLTNIRGGLD----TLPIHEAAYKG 138
           QD  G T L +   + N      +           +L ++    +    T P   A  +G
Sbjct: 150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEG 208

Query: 139 HKNTFQYLLEVTHGVDI 155
           +   FQ+L++      I
Sbjct: 209 NIVMFQHLMQ--KRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 93  GYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
             + L L A + +++AL  L+K   C  +     G  +T  +H AA   +      L+E 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMG--ET-ALHIAALYDNLEAAMVLME- 58

Query: 150 THGVDIYSGN 159
               ++    
Sbjct: 59  -AAPELVFEP 67

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.1 bits (108), Expect = 2e-06
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           + +   T L + A +G+   ++VL+K   + N  ++     T  +H A    H+   + L
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK--MT-ALHWATEHNHQEVVELL 119

Query: 147 LEVTHGVDI 155
           ++  +G D+
Sbjct: 120 IK--YGADV 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 44.7 bits (107), Expect = 3e-06
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           D  G + L L A  G+    +VL++   + +         T P+H AA +GH N  + LL
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD--RT-PLHMAASEGHANIVEVLL 87

Query: 148 EVTHGVDI 155
           +  HG D+
Sbjct: 88  K--HGADV 93

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D    TAL       +   +++L+K   + +  +      T     +   G+++  + L
Sbjct: 96  KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC--KT-AFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 93  GYTALFLCAGKGNLRALKVLVKCNPNL-TNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTH 151
               L   A  G    +++L+       T+  G   + P+H AA  GH +T + LL    
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLG--TS-PLHLAAQYGHFSTTEVLLR--A 56

Query: 152 GVDI 155
           GV  
Sbjct: 57  GVSR 60

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D+ G   L      G+    ++LVK     N+ ++     T P+HEAA KG     + L
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK--FT-PLHEAAAKGKYEICKLL 127

Query: 147 LEVTHGVDI 155
           L+  HG D 
Sbjct: 128 LQ--HGADP 134

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVKC---NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +      L   A  G++  +K L      N      R    T P+H AA     +  +YL
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQ--ST-PLHFAAGYNRVSVVEYL 61

Query: 147 LEVTHGVDI 155
           L+  HG D+
Sbjct: 62  LQ--HGADV 68

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.0 bits (108), Expect = 3e-06
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D  G+T L L A  G+L  ++VL+K   + N  +  G   T P+  AA  GH    + L
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG--MT-PLRLAALFGHLEIVEVL 99

Query: 147 LEVTHGVDI 155
           L+  +G D+
Sbjct: 100 LK--NGADV 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 2e-05
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 86  LARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTF 143
                      L   A  G    +++L+    + N  +  G   T P+H AA+ GH    
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASG--WT-PLHLAAFNGHLEIV 63

Query: 144 QYLLEVTHGVDIYSG-NDG 161
           + LL+  +G D+ +  + G
Sbjct: 64  EVLLK--NGADVNAVDHAG 80

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 7e-05
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D  G+T L L A  G+L  ++VL+K   + N  +  G   T     +   G+++  + L
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG--KT-AFDISIDNGNEDLAEIL 165

Query: 147 LEV 149
            ++
Sbjct: 166 QKL 168

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.1 bits (103), Expect = 3e-06
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +D++G T L L A  G+L  +K+L++   + N  +  G   T P+H AA  GH    + L
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG--RT-PLHLAARNGHLEVVKLL 87

Query: 147 LEV 149
           LE 
Sbjct: 88  LEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 7e-06
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 92  HGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV 149
           +G T L L A  G+L  +K+L++   + N  +  G   T P+H AA  GH    + LLE 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG--RT-PLHLAARNGHLEVVKLLLE- 56

Query: 150 THGVDIYSG-NDG 161
             G D+ +   +G
Sbjct: 57  -AGADVNAKDKNG 68

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.5 bits (104), Expect = 7e-06
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 7/69 (10%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           +DE+G T L+L    G+L  ++VL+K   + N  +  G   T P+H AA+ GH    + L
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG--FT-PLHLAAFIGHLEIAEVL 99

Query: 147 LEVTHGVDI 155
           L+  HG D+
Sbjct: 100 LK--HGADV 106

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D  G+T L L A  G+L   +VL+K   + N  +  G   T     +   G+++  + L
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG--KT-AFDISIGNGNEDLAEIL 132

Query: 147 LE 148
            +
Sbjct: 133 QK 134

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            +    +AL +    G L+    L        ++N +G   T P+  AA +G    F+++
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQG--LT-PLKLAAKEGKIEIFRHI 240

Query: 147 LEVTHGVDIYSGN 159
           L+        + +
Sbjct: 241 LQ--REFSGAAAH 251

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 18/104 (17%)

Query: 57  AIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK-- 114
           A +  L+ ++ D         A   D      +   G++AL +   K +L+ +K+LV+  
Sbjct: 60  ACIMPLLQIDKDSGNPKPLVNAQCTD------EFYQGHSALHIAIEKRSLQCVKLLVENG 113

Query: 115 CNPNLTNIRGGLDT----------LPIHEAAYKGHKNTFQYLLE 148
            + +L                   LP+  AA     +   YLLE
Sbjct: 114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 4/108 (3%)

Query: 77  LASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEA 134
           L      + +A      Y A  L A  G+L  L  L +         I+          A
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 206

Query: 135 AYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLK 182
             +GH N   +LL+    V +                      ++ LK
Sbjct: 207 VGRGHHNVINFLLD--CPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 252

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 5/91 (5%)

Query: 93  GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTL--PIHEAAYKGHKNTFQYLLEVT 150
            Y  +   A  G       L +            + L   +     +       +L+   
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-- 63

Query: 151 HGVDI-YSGNDGARVLLLLIAANLYDVALDL 180
            G DI     +G  +   L      D+    
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKC--NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
            D+   TAL      G+   ++ L++     N  +  G   + P+H AA  G     + L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG--WS-PLHIAASAGXDEIVKAL 92

Query: 147 LEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH 184
           L    G  + + N      L   A+        +L   
Sbjct: 93  LV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 86  LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
           +   +++G T L   A K       +L++   N  + +   D   +H AA KG+      
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 146 LLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH 184
           LL   +       +      L L            L   
Sbjct: 158 LLF--YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 7/65 (10%)

Query: 93  GYTALFLCAGKGNLRALKVLV--KCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT 150
                 L          + ++  K     T+      T  +H A   GH    ++LL+  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDS--RT-ALHWACSAGHTEIVEFLLQ-- 61

Query: 151 HGVDI 155
            GV +
Sbjct: 62  LGVPV 66

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 18/114 (15%)

Query: 53  TIFHAIVELLVDVESDEATCLLDKLASKVDPQTLA-----RQDEHGYTALFLCAGKGNLR 107
           T     +  L + ++D    LLD        +             G TAL +   + N+ 
Sbjct: 56  TCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMT 115

Query: 108 ALKVLV--------KCNPNLTNIRGGLDTL-----PIHEAAYKGHKNTFQYLLE 148
            + +LV          N +      G         P+  AA        ++LL+
Sbjct: 116 LVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 17/94 (18%), Positives = 24/94 (25%), Gaps = 24/94 (25%)

Query: 73  LLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKC----------------- 115
           LL       D      +D  G T L       +                           
Sbjct: 167 LLQNSWQPADIS---ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 116 -NPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
               +TN +G   T P+  AA  G      Y+L+
Sbjct: 224 KLEEITNRKG--LT-PLALAASSGKIGVLAYILQ 254

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 90  DEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGH---KNTFQ 144
           DEHG T L       NL  +K LVK   N    +  G  ++  + +A    +     TF+
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG--ES-CLVKAVKSVNNYDSGTFE 184

Query: 145 YLLEVTHGVDI 155
            LL+      +
Sbjct: 185 ALLDY-LYPCL 194

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 25/159 (15%)

Query: 17  WPLYRMIEKNDWRGVEDFVT---NHPDALTAKTVAPGSS--TIFHAIVELLVDVESDEAT 71
             L+ ++ +    G+E  ++    H   LT +     S+  T     +  L    +D   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 72  CLLDKLASKVDPQTLAR-----QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRG 124
            LLD      + +             G TAL +   +     +++LV+   + +      
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 125 GLDTL-----------PIHEAAYKGHKNTFQYLLEVTHG 152
                           P+  AA     +   YL E  +G
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE--NG 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.5e-36  Score=228.25  Aligned_cols=182  Identities=15%  Similarity=0.083  Sum_probs=168.9

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD   90 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~   90 (227)
                      .+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+ ..+++..+
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~~-~~~~~~~~  121 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASA-DANIQ-DNMGRTPLHAAVSADAQ--------GVFQILIRNR-ATDLDARM  121 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHST-TSCTTCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC-CCCccccC
Confidence            36789999999999999999999999876 45455 88899999999999999        9999999998 23788899


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHH
Q 027136           91 EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIA  170 (227)
Q Consensus        91 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~  170 (227)
                      ..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+.
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~  199 (253)
T 1yyh_A          122 HDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAR  199 (253)
T ss_dssp             TTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence            9999999999999999999999999999 79999999999999999999999999999999999 999999999999999


Q ss_pred             hCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          171 ANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       171 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      .|+.+++++|++. +.+.+.+|..|.||+++|+.++
T Consensus       200 ~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          200 EGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHHHc-CCCccccccCCCCHHHHHHHcC
Confidence            9999999999977 5666799999999999999854

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.6e-35  Score=220.06  Aligned_cols=181  Identities=15%  Similarity=0.083  Sum_probs=167.9

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDE   91 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~   91 (227)
                      +..|.||||.|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+ +.+++..+.
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~~-~~~~~~~~~   90 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASA-DANIQ-DNMGRTPLHAAVSADAQ--------GVFQILIRNR-ATDLDARMH   90 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHBT-TSCTTCCCT
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCC-CCCCc-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC-CCCcccCCC
Confidence            6789999999999999999999999876 45455 88999999999999999        9999999998 237888899


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHh
Q 027136           92 HGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAA  171 (227)
Q Consensus        92 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~  171 (227)
                      .|.||||+|+..++.+++++|++.+++ ++..+..|.||||+|+..++.+++++|++.|++++ .++..|.||||+|+..
T Consensus        91 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~  168 (223)
T 2f8y_A           91 DGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAARE  168 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             CCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCcCHHHHHHHc
Confidence            999999999999999999999999999 78999999999999999999999999999999999 9999999999999999


Q ss_pred             CcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          172 NLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       172 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ++.+++++|++. +.+.+.+|..|.||+++|+..+
T Consensus       169 ~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~  202 (223)
T 2f8y_A          169 GSYETAKVLLDH-FANRDITDHMDRLPRDIAQERM  202 (223)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHc-CCCCccccccCCCHHHHHHHhc
Confidence            999999999987 5566799999999999999844

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.3e-35  Score=222.44  Aligned_cols=180  Identities=17%  Similarity=0.115  Sum_probs=161.7

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc-----cc
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL-----AR   88 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~-----~~   88 (227)
                      .|.||||.|++.|+.+.++.|++..+..++.+ +..|.||||+|+..|+.        +++++|++.+  +++     +.
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~--------~~v~~Ll~~~--~~~~~~~~~~   70 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNL--------EAAMVLMEAA--PELVFEPMTS   70 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHHC--GGGGGCCCCS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--chhccccccc
Confidence            48899999999999999999999854566666 88999999999999999        9999999999  655     56


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCC-------------CCChHHHHHHHcCChHHHHHHHhhcCCCcc
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGG-------------LDTLPIHEAAYKGHKNTFQYLLEVTHGVDI  155 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  155 (227)
                      .+..|.||||+|+..|+.+++++|++++++ ++..+.             .|.||||+|+..|+.+++++|++.|++++ 
T Consensus        71 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-  148 (232)
T 2rfa_A           71 ELYEGQTALHIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-  148 (232)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-
Confidence            677899999999999999999999999998 566654             79999999999999999999999999999 


Q ss_pred             ccCCCCccHHHHHHHhCcHHHH----HHHHHhCCCCc-----cccccccccHHHHHhhCC
Q 027136          156 YSGNDGARVLLLLIAANLYDVA----LDLLKLHPTIG-----RDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       156 ~~~~~g~t~L~~a~~~~~~~~~----~~Ll~~~~~~~-----~~~~~~g~t~l~~a~~~~  206 (227)
                      .++..|+||||+|+..++.+++    ++|++.+....     +.+|..|.||||+|+..+
T Consensus       149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence            9999999999999999999988    89997755432     588999999999999833

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.9e-35  Score=220.52  Aligned_cols=184  Identities=15%  Similarity=0.125  Sum_probs=149.2

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCc-ccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPD-ALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      .+..|.||||+|+..|+.++++.|++.++. ......+..|.||||+|+..|+.        +++++|++.+.+.+++..
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~  103 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL--------EVVKSLYDRPLKPDLNKI  103 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCH--------HHHHHHHSSSSCCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCH--------HHHHHHHhCCCCcccccC
Confidence            566788888888888888888888888732 22231367788888888888888        888888888755667777


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhc-CCCccccCCCCccHHHHH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT-HGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~a  168 (227)
                      +..|.||||+|+..++.+++++|++++.+ ++.++..|.||||+|+..|+.+++++|++.| ++++ .++..|+||||+|
T Consensus       104 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~d~~g~t~L~~A  181 (228)
T 2dzn_A          104 TNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN-WQDKQGWTPLFHA  181 (228)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC-CCCTTSCCHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc-CcCCCCCCHHHHH
Confidence            88888888888888888888888888888 6888888888888888888888888888888 7777 8888888888888


Q ss_pred             HHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          169 IAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       169 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      +..++.+++++|+++.+.+.+.+|..|.||+++|.+
T Consensus       182 ~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             HHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            888888888888855466777888888888888765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.5e-35  Score=227.27  Aligned_cols=183  Identities=16%  Similarity=0.064  Sum_probs=157.6

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCc--ccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPD--ALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~--~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      .+..|.||||+|+..|+.++++.|++.+..  .++.+ +..|.||||+|+..|+.        +++++|++.+  ++++.
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--a~~~~   73 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEA--------STVEKLYAAG--AGVLV   73 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--CCSSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCC
Confidence            456799999999999999999999987653  24455 78899999999999999        9999999999  88888


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCc----------------------------------------------ccc
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNL----------------------------------------------TNI  122 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~----------------------------------------------~~~  122 (227)
                      ++..|.||||+|+..++.+++++|+++++..                                              ++.
T Consensus        74 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (282)
T 1oy3_D           74 AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA  153 (282)
T ss_dssp             CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC
T ss_pred             CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCC
Confidence            9999999999999999999999999876541                                              356


Q ss_pred             CCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCC-CCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHH
Q 027136          123 RGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGN-DGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNK  201 (227)
Q Consensus       123 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  201 (227)
                      ++..|.||||+|+..|+.+++++|++.|++++ ..+. .|+||||+|+..|+.+++++|++. +.+.+.+|..|.||||+
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGS  231 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHH
Confidence            78889999999999999999999999999988 6664 499999999999999999999977 66678899999999999


Q ss_pred             HhhCC
Q 027136          202 LAQKP  206 (227)
Q Consensus       202 a~~~~  206 (227)
                      |+.++
T Consensus       232 A~~~~  236 (282)
T 1oy3_D          232 ALLRP  236 (282)
T ss_dssp             HHTSS
T ss_pred             HHHcC
Confidence            98743

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.5e-35  Score=220.16  Aligned_cols=181  Identities=18%  Similarity=0.155  Sum_probs=166.6

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc-CCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR-QDEHG   93 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~   93 (227)
                      |.||||.|++.|+.+.++.+++.++...... +..|.||||+|+..|+.        +++++|++.+...+++. .+..|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~~~~~~~~~~~~~~g   72 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAH--------EITSFLLSKMENVNLDDYPDDSG   72 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTCTTCCGGGCCCTTS
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCH--------HHHHHHHhccccccccccCCCCC
Confidence            6799999999999999999999998655445 88999999999999999        99999999984455555 78899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcC--CCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHh
Q 027136           94 YTALFLCAGKGNLRALKVLVKCN--PNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAA  171 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~  171 (227)
                      .||||+|+..|+.+++++|++++  ++ ++..+..|.||||+|+..++.+++++|++.|++++ .++..|+||||+|+..
T Consensus        73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~  150 (228)
T 2dzn_A           73 WTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASV  150 (228)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHc
Confidence            99999999999999999999998  77 68899999999999999999999999999999999 9999999999999999


Q ss_pred             CcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          172 NLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       172 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |+.+++++|++.++.+.+.+|..|.||||+|+..+
T Consensus       151 ~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~  185 (228)
T 2dzn_A          151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG  185 (228)
T ss_dssp             TCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcC
Confidence            99999999998876888899999999999999866

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.4e-35  Score=222.16  Aligned_cols=183  Identities=19%  Similarity=0.180  Sum_probs=110.6

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      ..+..|.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+ +.+++..
T Consensus        39 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~~~~Ll~~~-~~~~~~~  107 (237)
T 3b7b_A           39 TCSEDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPK-DAEGSTCLHLAAKKGHY--------EVVQYLLSNG-QMDVNCQ  107 (237)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CCCCC-CTTSCCHHHHHHHTTCH--------HHHHHHHTTT-CCCTTCC
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCC-CCCCCcHHHHHHHcCCH--------HHHHHHHhCC-CCCcccC
Confidence            334445556666666666666655555543 22233 45555666666666666        6666666655 2445555


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  169 (227)
                      +..|.||||+|+..++.+++++|++.+++ ++.++..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+
T Consensus       108 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~  185 (237)
T 3b7b_A          108 DDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAA  185 (237)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHH
Confidence            55666666666666666666666666665 45666666666666666666666666666666666 66666666666666


Q ss_pred             HhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          170 AANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       170 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ..++.+++++|++. +.+.+.+|..|.||+|+|+..+
T Consensus       186 ~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          186 RENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             HTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTC
T ss_pred             HhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHH
Confidence            66666666666655 4444566666666666666533

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2e-35  Score=225.92  Aligned_cols=185  Identities=17%  Similarity=0.075  Sum_probs=140.6

Q ss_pred             chhhhcccHHHHHHHHhC-------------CHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHH
Q 027136            9 EDEYYVRYWPLYRMIEKN-------------DWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLD   75 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g-------------~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~   75 (227)
                      +..+..|.||||+|+..|             +.++++.|++.+....... +..|.||||+|+..|+.        ++++
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~--------~~v~   74 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRS--------DAAK   74 (253)
T ss_dssp             ------------------------------------------------CC-CTTSCCHHHHHHHTTCH--------HHHH
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCH--------HHHH
Confidence            455678999999999987             8999999999987554334 88999999999999999        9999


Q ss_pred             HHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCcc
Q 027136           76 KLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI  155 (227)
Q Consensus        76 ~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  155 (227)
                      +|++.+  ++++..+..|.||||+|+..++.+++++|++.+...++..+..|.||||+|+..++.+++++|++.|++++ 
T Consensus        75 ~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-  151 (253)
T 1yyh_A           75 RLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-  151 (253)
T ss_dssp             HHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-
T ss_pred             HHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-
Confidence            999999  88999999999999999999999999999999874378899999999999999999999999999999999 


Q ss_pred             ccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          156 YSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       156 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ..+..|+||||+|+..|+.+++++|++. +.+.+.+|..|.||||+|+..+
T Consensus       152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~  201 (253)
T 1yyh_A          152 AVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREG  201 (253)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCC
Confidence            9999999999999999999999999977 6667899999999999999744

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.4e-35  Score=209.74  Aligned_cols=156  Identities=24%  Similarity=0.261  Sum_probs=146.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcH
Q 027136           17 WPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTA   96 (227)
Q Consensus        17 ~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~   96 (227)
                      ++|+.|++.|+.++|+.|++.+. +++.+ +..|.||||+|+..++.        +++++|++.+  ++++.+|..|.||
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Ga-dvn~~-d~~g~t~l~~a~~~~~~--------~~~~~ll~~g--ad~~~~d~~g~Tp   73 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGA-DVNAS-DSDGRTPLHHAAENGHK--------EVVKLLISKG--ADVNAKDSDGRTP   73 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CCCCc-CCCCCCHHHHHHHcCCH--------HHHHHHHhcc--cchhhhccCCCCH
Confidence            47999999999999999999987 56566 89999999999999999        9999999999  8999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHH
Q 027136           97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDV  176 (227)
Q Consensus        97 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~  176 (227)
                      ||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.++
T Consensus        74 Lh~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g~~~i  151 (169)
T 4gpm_A           74 LHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEV  151 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999 79999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhCCC
Q 027136          177 ALDLLKLHPT  186 (227)
Q Consensus       177 ~~~Ll~~~~~  186 (227)
                      +++|++.++.
T Consensus       152 v~~Ll~~GA~  161 (169)
T 4gpm_A          152 VKLLEKQGGW  161 (169)
T ss_dssp             HHHHHTC---
T ss_pred             HHHHHHCCCC
Confidence            9999977544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.4e-35  Score=219.19  Aligned_cols=180  Identities=17%  Similarity=0.080  Sum_probs=152.5

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      ..+..|.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  .+++.+
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~  102 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGV-PVNDK-DDAGWSPLHIAASAGXD--------EIVKALLVKG--AHVNAV  102 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--CCTTCC
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCC-CCCCc-CCCCCCHHHHHHHcCHH--------HHHHHHHHcC--CCCCCC
Confidence            345678889999999999998888888865 44455 77888899999998888        8889888888  778888


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  169 (227)
                      +..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+
T Consensus       103 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~  180 (231)
T 3aji_A          103 NQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN-IQDTEGNTPLHLAC  180 (231)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-ccCCCCCCHHHHHH
Confidence            88888999999988899999999988888 68888888999999999899999999998888888 88888899999999


Q ss_pred             HhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          170 AANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       170 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      ..++.+++++|++. +.+.+.+|..|.||+++|+.
T Consensus       181 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          181 DEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCH
T ss_pred             HCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHh
Confidence            98889999988877 55567888889999988865

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2e-34  Score=212.75  Aligned_cols=180  Identities=16%  Similarity=0.155  Sum_probs=165.5

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCC
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEH   92 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   92 (227)
                      ..+.+|||.|+..|+.+.++.++..++..++.. +..|.||||+|+..|+.        +++++|++.+  ++++..+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~~~   71 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDI--------EIAKALIDRG--ADINLQNSI   71 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--CCTTCCCTT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCCCCCC
Confidence            357899999999999999999999987666666 88999999999999999        9999999999  889999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhc-CCCccccCCCCccHHHHHHHh
Q 027136           93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT-HGVDIYSGNDGARVLLLLIAA  171 (227)
Q Consensus        93 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~a~~~  171 (227)
                      |.||||+|+..++.+++++|++.+...++..+..|.||||+|+..|+.+++++|++.| ++++ .++..|+||||+|+..
T Consensus        72 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~  150 (201)
T 3hra_A           72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGL  150 (201)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHh
Confidence            9999999999999999999996554337889999999999999999999999999999 8888 9999999999999998


Q ss_pred             Cc-----HHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          172 NL-----YDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       172 ~~-----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      +.     .+++++|++. +.+.+.+|..|.||||+|+..
T Consensus       151 ~~~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~  188 (201)
T 3hra_A          151 REGNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQK  188 (201)
T ss_dssp             SCCSHHHHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHc
Confidence            87     9999999977 666789999999999999984

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.8e-34  Score=215.62  Aligned_cols=179  Identities=15%  Similarity=0.088  Sum_probs=167.8

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      .+.+|||.|++.|+.+.++.++..++...+.. +..|.||||+|+..|+.        +++++|++.+  .+++..+..|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--~~~~~~~~~g   73 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHT--------EIVEFLLQLG--VPVNDKDDAG   73 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--CCSCCCCTTS
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcH--------HHHHHHHHhC--CCCCCcCCCC
Confidence            46789999999999999999999987666555 88999999999999999        9999999999  8899999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCc
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANL  173 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~  173 (227)
                      .||||+|+..++.+++++|++++.+ ++.++..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..|+
T Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~  151 (231)
T 3aji_A           74 WSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGN  151 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCC
Confidence            9999999999999999999999999 68999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          174 YDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       174 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      .+++++|++. +.+.+.+|..|.||||+|+..+
T Consensus       152 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~  183 (231)
T 3aji_A          152 LKMVHILLFY-KASTNIQDTEGNTPLHLACDEE  183 (231)
T ss_dssp             HHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHhc-CCCccccCCCCCCHHHHHHHCC
Confidence            9999999976 6667799999999999999854

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=226.17  Aligned_cols=183  Identities=16%  Similarity=0.125  Sum_probs=146.0

Q ss_pred             chhhhcccHHHHHHHHhCCHH-HHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWR-GVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLA   87 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~-~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~   87 (227)
                      +..+..+.+||+.|+..+..+ .++.|+..+. .++.+ +..|.||||+|+..|+.        +++++|++.+  ++++
T Consensus        46 ~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga-dvn~~-d~~G~TpLh~A~~~g~~--------~~v~~Ll~~~--a~~~  113 (269)
T 4b93_B           46 SAADPEFCHPLCQCPKCAPAQKRLAKVPASGL-GVNVT-SQDGSSPLHVAALHGRA--------DLIPLLLKHG--ANAG  113 (269)
T ss_dssp             -----------------------------CCC-CTTCC-CTTSCCHHHHHHHTTCT--------THHHHHHHTT--CCTT
T ss_pred             cccCccCCCHHHHHHHhCCHHHHHHHHHHCCC-CCCCc-CCCCCCHHHHHHHcCcH--------HHHHHHHhcC--CCcC
Confidence            344567889999999888765 6777777775 56566 88999999999999999        9999999999  8899


Q ss_pred             cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHH
Q 027136           88 RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLL  167 (227)
Q Consensus        88 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  167 (227)
                      ..+..|.||+|+|+..++.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|++++ ..+..|+||||+
T Consensus       114 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn-~~~~~g~t~Lh~  191 (269)
T 4b93_B          114 ARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN-ASNNKGNTALHE  191 (269)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT-CBCTTSCBHHHH
T ss_pred             ccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-ccccCCCcHHHH
Confidence            9999999999999999999999999999999 79999999999999999999999999999999999 999999999999


Q ss_pred             HHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          168 LIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       168 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |+..|+.+++++|++. +++.+.+|..|+||||+|++++
T Consensus       192 A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          192 AVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTTC
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhCC
Confidence            9999999999999977 6677899999999999998755

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.2e-34  Score=216.16  Aligned_cols=184  Identities=16%  Similarity=0.068  Sum_probs=168.9

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      +.++..|.||||.|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  .+++.
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~   72 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTC-SEDQRTPLMEAAENNHL--------EAVKYLIKAG--ALVDP   72 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHTTCH--------HHHHHHHTTT--CCCCC
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCcc-CCCCCCHHHHHHHhCCH--------HHHHHHHhCC--CCCCC
Confidence            3456779999999999999999999999876 44455 78899999999999999        9999999999  88999


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                      .+..|.||||+|+..|+.+++++|++.++..++..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|
T Consensus        73 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A  151 (237)
T 3b7b_A           73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWA  151 (237)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHH
Confidence            999999999999999999999999999843378899999999999999999999999999999999 9999999999999


Q ss_pred             HHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          169 IAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       169 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +..|+.+++++|++. +.+.+.+|..|.||||+|+..+
T Consensus       152 ~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~  188 (237)
T 3b7b_A          152 AFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAAREN  188 (237)
T ss_dssp             HHHCCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhC
Confidence            999999999999977 5666789999999999999855

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.5e-34  Score=216.92  Aligned_cols=179  Identities=18%  Similarity=0.144  Sum_probs=113.5

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHc---CCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTN---HPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~---~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      +..|.||||.|+..|+.++++.|++.   .+..++.. +..|.||||+|+..|+.        +++++|++.+  .+++.
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~   74 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLP--------SVVRLLVTAG--ASPMA   74 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCH--------HHHHHHHHcC--CCccc
Confidence            44566777777777777666666652   22234344 56666777777776666        6666666666  56666


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCC----CccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccC-CCCcc
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNP----NLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSG-NDGAR  163 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t  163 (227)
                      .+..|.||||+|+..++.+++++|++.++    + ++..+..|.||||+|+..++.+++++|++.|++++ ..+ ..|.|
T Consensus        75 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~g~t  152 (241)
T 1k1a_A           75 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD-LEARNYDGLTALHVAVNTECQETVQLLLERGADID-AVDIKSGRS  152 (241)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-cccccCCCc
Confidence            66666666666666666666666666655    3 45566666666666666666666666666666666 444 55666


Q ss_pred             HHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          164 VLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       164 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      |||+|+..|+.+++++|++. +.+.+.+|..|.||||+|+.
T Consensus       153 ~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~  192 (241)
T 1k1a_A          153 PLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASG  192 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            66666666666666666655 44445666666666666665

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.1e-34  Score=219.69  Aligned_cols=187  Identities=16%  Similarity=0.065  Sum_probs=169.0

Q ss_pred             CCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc-
Q 027136            5 DDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP-   83 (227)
Q Consensus         5 ~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~-   83 (227)
                      +...+..+..|.||||+|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+.+ 
T Consensus        36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~~g~t~l~~A~~~~~~--------~~~~~Ll~~~~~~  105 (241)
T 1k1a_A           36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-SPMAL-DRHGQTAAHLACEHRSP--------TCLRALLDSAAPG  105 (241)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHHSCTT
T ss_pred             CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-Ccccc-CCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCc
Confidence            34445667789999999999999999999999886 44455 88899999999999999        999999999821 


Q ss_pred             -cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC-CCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCC
Q 027136           84 -QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG-GLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDG  161 (227)
Q Consensus        84 -~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  161 (227)
                       .+++..+..|.||||+|+..++.+++++|++.+.+ ++..+ ..|.||||+|+..|+.+++++|++.|++++ .++..|
T Consensus       106 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g  183 (241)
T 1k1a_A          106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSG  183 (241)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CBCTTS
T ss_pred             cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCC
Confidence             16778889999999999999999999999999999 57777 889999999999999999999999999999 999999


Q ss_pred             ccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          162 ARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       162 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      +||||+|+..|+.+++++|++. +.+.+.+|..|.||+++|+.
T Consensus       184 ~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          184 SSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSS
T ss_pred             CCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHh
Confidence            9999999999999999999976 66678999999999999987

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.6e-35  Score=226.14  Aligned_cols=185  Identities=11%  Similarity=-0.012  Sum_probs=153.8

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc-----
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP-----   83 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~-----   83 (227)
                      +..+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+..     
T Consensus        39 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~-~~~g~tpL~~A~~~~~~--------~~v~~Ll~~~~~~~~~~  108 (282)
T 1oy3_D           39 DLQNDLGQTALHLAAILGEASTVEKLYAAGA-GVLVA-ERGGHTALHLACRVRAH--------TCACVLLQPRPSHPRDA  108 (282)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSSCC-CTTSCCHHHHHTTTTCH--------HHHHHHSSSCCSSCCCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHcCCc--------chhHhhhccCCCCchhh
Confidence            4556789999999999999999999999986 45455 88999999999999999        999999997621     


Q ss_pred             ----------------------------------------cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccC
Q 027136           84 ----------------------------------------QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIR  123 (227)
Q Consensus        84 ----------------------------------------~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  123 (227)
                                                              .+++..+..|.||||+|+..|+.+++++|++++++ ++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~  187 (282)
T 1oy3_D          109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKP  187 (282)
T ss_dssp             -----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCC
T ss_pred             HHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCC
Confidence                                                    22567788999999999999999999999999999 6777


Q ss_pred             CC-CCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHH
Q 027136          124 GG-LDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       124 ~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      +. .|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..++.+++++|++. +++.+.+|..|.||+++|
T Consensus       188 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC----------
T ss_pred             CCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-ccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCCccccccccc
Confidence            64 49999999999999999999999999999 9999999999999999999999999977 666789999999999998


Q ss_pred             hhCC
Q 027136          203 AQKP  206 (227)
Q Consensus       203 ~~~~  206 (227)
                      ....
T Consensus       266 ~~~~  269 (282)
T 1oy3_D          266 GSDS  269 (282)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            7644

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=222.51  Aligned_cols=179  Identities=15%  Similarity=0.110  Sum_probs=101.8

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD   90 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~   90 (227)
                      .+..|.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  ++++..+
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--a~~~~~~  122 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQGW-AVNII-TADHVSPLHEACLGGHL--------SCVKILLKHG--AQVNGVT  122 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTTC-CSCEE-CTTCCCHHHHHHHTTCH--------HHHHHHHHTT--CCSSCCC
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCc-CCCCCCHHHHHHHCCcH--------HHHHHHHHCC--CCCCCCC
Confidence            44556666666666666666666666654 33344 55666666666666666        6666666666  5566666


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHH
Q 027136           91 EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIA  170 (227)
Q Consensus        91 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~  170 (227)
                      ..|.||||+|+..|+.+++++|++.+++ ++. +..|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+.
T Consensus       123 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~  199 (285)
T 3d9h_A          123 ADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACE  199 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH
Confidence            6666666666666666666666666555 232 2235555555555555555555555555555 555555555555555


Q ss_pred             hCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          171 ANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       171 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      .|+.+++++|++.+. +.+ .+..|.||||+|+..+
T Consensus       200 ~~~~~~v~~Ll~~ga-~~~-~~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          200 NQQRACVKKLLESGA-DVN-QGKGQDSPLHAVVRTA  233 (285)
T ss_dssp             TTCHHHHHHHHHTTC-CTT-CCBTTBCHHHHHHHTT
T ss_pred             cCcHHHHHHHHHCCC-CCC-CCCCCCCHHHHHHHcC
Confidence            555555555554422 222 2445555555555433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.9e-35  Score=222.66  Aligned_cols=184  Identities=15%  Similarity=0.047  Sum_probs=160.6

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCc---ccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPD---ALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~---~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      ..+..|.||||.|+..|+.++++.|++.+..   .++.. +..|.||||+|+..|+.        +++++|++.+  +++
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~   71 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQP--------EIAEALLGAG--CDP   71 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCH--------HHHHCCCSCC--CCS
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCC
Confidence            4567799999999999999999999887653   35455 78899999999999999        9999999999  889


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-----ccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCC-C
Q 027136           87 ARQDEHGYTALFLCAGKGNLRALKVLVKCNPN-----LTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGN-D  160 (227)
Q Consensus        87 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~  160 (227)
                      +.++..|.||||+|+..|+.+++++|++.+.+     ..+..+..|.||||+|+..|+.+++++|++.|++++ .++. .
T Consensus        72 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~  150 (236)
T 1ikn_D           72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCN  150 (236)
T ss_dssp             CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTT
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCC
Confidence            99999999999999999999999999999753     246788899999999999999999999999999999 7776 9


Q ss_pred             CccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          161 GARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       161 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |.||||+|+..|+.+++++|++. +.+.+.+|..|.|||++|+.++
T Consensus       151 g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~  195 (236)
T 1ikn_D          151 GRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRP  195 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccC
Confidence            99999999999999999999977 6667899999999999998744

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=218.46  Aligned_cols=184  Identities=12%  Similarity=0.057  Sum_probs=167.1

Q ss_pred             CCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc
Q 027136            4 SDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      .+...+..+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  
T Consensus        81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--  148 (285)
T 3d9h_A           81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA-QVNGV-TADWHTPLFNACVSGSW--------DCVNLLLQHG--  148 (285)
T ss_dssp             TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTC-CSSCC-CTTCCCHHHHHHHHTCH--------HHHHHHHHTT--
T ss_pred             CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCHH--------HHHHHHHHCC--
Confidence            344556777889999999999999999999999876 45455 88999999999999999        9999999999  


Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCcc
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGAR  163 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  163 (227)
                      .+++..+ .|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|++.|++++ . +..|.|
T Consensus       149 ~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~-~~~g~t  224 (285)
T 3d9h_A          149 ASVQPES-DLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVN-Q-GKGQDS  224 (285)
T ss_dssp             CCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-C-CBTTBC
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-C-CCCCCC
Confidence            6666544 599999999999999999999999999 79999999999999999999999999999999988 4 888999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          164 VLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       164 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      |||+|+..++.+++++|++. +.+.+.+|..|+|||++|+.
T Consensus       225 ~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          225 PLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCT
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhcC
Confidence            99999999999999999977 67778999999999999985

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-33  Score=216.75  Aligned_cols=188  Identities=16%  Similarity=0.123  Sum_probs=163.7

Q ss_pred             CCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc
Q 027136            5 DDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus         5 ~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      +...+..+..|.||||+|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  .
T Consensus        62 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g--~  129 (285)
T 1wdy_A           62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNEC-DFYGFTAFMEAAVYGKV--------KALKFLYKRG--A  129 (285)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCB-CTTCCBHHHHHHHTTCH--------HHHHHHHHTT--C
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcc-CcccCCHHHHHHHhCCH--------HHHHHHHHhC--C
Confidence            33444555677888888888888888888888765 34444 77788888888888888        9999999988  6


Q ss_pred             ccccC----------CCCCCcHHHHHHhcCCHHHHHHHHHc-CCCccccCCCCCChHHHHHHHcCC----hHHHHHHHhh
Q 027136           85 TLARQ----------DEHGYTALFLCAGKGNLRALKVLVKC-NPNLTNIRGGLDTLPIHEAAYKGH----KNTFQYLLEV  149 (227)
Q Consensus        85 ~~~~~----------~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~  149 (227)
                      +++..          +..|.||||+|+..|+.+++++|++. +.+ ++..+..|.||||+|+..++    .+++++|++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~  208 (285)
T 1wdy_A          130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH  208 (285)
T ss_dssp             CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT
T ss_pred             CcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHc
Confidence            66655          77899999999999999999999998 777 78999999999999999999    8999999999


Q ss_pred             cCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          150 THGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       150 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |++++ .++..|+||||+|+..|+.+++++|++..+.+.+.+|..|.||||+|+..+
T Consensus       209 g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          209 GADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             TCCSS-CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            99999 999999999999999999999999999778888899999999999999843

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.3e-34  Score=229.29  Aligned_cols=115  Identities=21%  Similarity=0.328  Sum_probs=108.6

Q ss_pred             CCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCC-----CccccCCCC
Q 027136           89 QDEHGYTALFLCAGKG--NLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG-----VDIYSGNDG  161 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g  161 (227)
                      .+..|.||||+|+..|  +.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.|++     ++ ..+..|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g  211 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQG  211 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCC
Confidence            7778999999999999  99999999999999 799999999999999999999999999999998     88 899999


Q ss_pred             ccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          162 ARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       162 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +||||+|+..|+.+++++|++. +.+.+.+|..|.||||+|+..+
T Consensus       212 ~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~g  255 (364)
T 3ljn_A          212 NSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSVRAA  255 (364)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhC
Confidence            9999999999999999999976 6667899999999999999854

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=7.7e-34  Score=217.28  Aligned_cols=179  Identities=20%  Similarity=0.192  Sum_probs=155.6

Q ss_pred             cccHHHHHHHHhCCHHH----HHHHHHcCCccccc---ccCCCCccHHHHHHHh---cCccccchhHHHHHHHHHhcCCc
Q 027136           14 VRYWPLYRMIEKNDWRG----VEDFVTNHPDALTA---KTVAPGSSTIFHAIVE---LLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~----v~~ll~~~~~~~~~---~~~~~g~t~L~~a~~~---~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      .|.||||.|+..|+.+.    ++.+++.+. .++.   ..+..|.||||+|+..   |+.        +++++|++.+  
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~-~i~~~~~~~d~~g~t~L~~A~~~~~~g~~--------~~v~~Ll~~g--   69 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK-YLTDSAYTEGSTGKTCLMKAVLNLQDGVN--------ACIMPLLQID--   69 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSBTTTTBCHHHHHHHTCBTTBC--------TTHHHHHHHH--
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCC-CcccccccCCCCCCCHHHHHHHccccchH--------HHHHHHHhcC--
Confidence            37899999999999985    455555665 4444   1288999999999999   999        9999999998  


Q ss_pred             ccccc-----------CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC-------------CChHHHHHHHcCC
Q 027136           84 QTLAR-----------QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL-------------DTLPIHEAAYKGH  139 (227)
Q Consensus        84 ~~~~~-----------~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~l~~a~~~~~  139 (227)
                      ++++.           .|..|.||||+|+..|+.+++++|++++++ ++..+..             |.||||+|+..|+
T Consensus        70 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~  148 (256)
T 2etb_A           70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ  148 (256)
T ss_dssp             HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred             CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCC
Confidence            55542           346799999999999999999999999999 6888776             9999999999999


Q ss_pred             hHHHHHHHh---hcCCCccccCCCCccHHHHHHH--hCcHH-------HHHHHHHhCCCCc-------cccccccccHHH
Q 027136          140 KNTFQYLLE---VTHGVDIYSGNDGARVLLLLIA--ANLYD-------VALDLLKLHPTIG-------RDSIDSRRIVLN  200 (227)
Q Consensus       140 ~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~a~~--~~~~~-------~~~~Ll~~~~~~~-------~~~~~~g~t~l~  200 (227)
                      .+++++|++   .|++++ .++..|+||||+|+.  .++.+       ++++|++. +.+.       +.+|..|.||||
T Consensus       149 ~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          149 WDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             HHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHH
Confidence            999999999   999999 999999999999999  77888       99999988 4444       789999999999


Q ss_pred             HHhhCC
Q 027136          201 KLAQKP  206 (227)
Q Consensus       201 ~a~~~~  206 (227)
                      +|+..+
T Consensus       227 ~A~~~g  232 (256)
T 2etb_A          227 LAAKEG  232 (256)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            999943

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-33  Score=219.56  Aligned_cols=178  Identities=13%  Similarity=0.103  Sum_probs=158.3

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDE   91 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~   91 (227)
                      ...+.++|+.|+..|+.+.++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  ++++..+.
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--a~~~~~~~  104 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGA-DINYA-NVDGLTALHQACIDDNV--------DMVKFLVENG--ANINQPDN  104 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCC-CTTCB-CTTCCBHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCCT
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCC-CCccc-CCCCCCHHHHHHHcCCH--------HHHHHHHHCC--CCCCCCCC
Confidence            3457799999999999999999999886 45555 88899999999999999        9999999999  88999999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC-----------------------------------------------
Q 027136           92 HGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG-----------------------------------------------  124 (227)
Q Consensus        92 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-----------------------------------------------  124 (227)
                      .|.||||+|+..|+.+++++|++++++ ++..+                                               
T Consensus       105 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  183 (299)
T 1s70_B          105 EGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ  183 (299)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHH
Confidence            999999999999999999999999876 34433                                               


Q ss_pred             -------------CCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCcccc
Q 027136          125 -------------GLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDS  191 (227)
Q Consensus       125 -------------~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  191 (227)
                                   ..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+..|+.+++++|++. +++.+.+
T Consensus       184 ~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~  261 (299)
T 1s70_B          184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAV  261 (299)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred             HHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCc
Confidence                         457788999999999999999999999999 9999999999999999999999999977 6667899


Q ss_pred             ccccccHHHHHhh
Q 027136          192 IDSRRIVLNKLAQ  204 (227)
Q Consensus       192 ~~~g~t~l~~a~~  204 (227)
                      |..|.||+++|+.
T Consensus       262 d~~g~t~l~~A~~  274 (299)
T 1s70_B          262 NKVGQTAFDVADE  274 (299)
T ss_dssp             CTTSCCTTTSCCS
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999864

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-33  Score=228.97  Aligned_cols=185  Identities=18%  Similarity=0.157  Sum_probs=162.6

Q ss_pred             cCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136            7 QGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus         7 ~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      ..+..+..|.||||.|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  +++
T Consensus       204 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~g~~--------~~v~~Ll~~~--~~~  271 (437)
T 1n11_A          204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAE-SVQGVTPLHLAAQEGHA--------EMVALLLSKQ--ANG  271 (437)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHTTCH--------HHHHHHHTTT--CCT
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHCCCH--------HHHHHHHhcC--CCC
Confidence            334445567888888888888888888887775 34444 77888999999999999        9999999998  888


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHH
Q 027136           87 ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLL  166 (227)
Q Consensus        87 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  166 (227)
                      +..+..|.||||+|+..|+.+++++|++++.+ ++.++..|.||||+|+..|+.+++++|++.|++++ .++..|+||||
T Consensus       272 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~L~  349 (437)
T 1n11_A          272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLH  349 (437)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC-CCCCCCCCHHH
Confidence            88899999999999999999999999999998 68899999999999999999999999999999999 99999999999


Q ss_pred             HHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          167 LLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       167 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +|+..|+.+++++|++. +++.+.+|..|.||+++|++.+
T Consensus       350 ~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          350 QAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             HHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTT
T ss_pred             HHHHCChHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999999976 6677899999999999998866

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.1e-33  Score=209.65  Aligned_cols=189  Identities=14%  Similarity=0.058  Sum_probs=166.8

Q ss_pred             CCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc
Q 027136            4 SDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      .+...+..+..|.||||.|+..|+.++++.|++.+....... +..|.||||+|+..|+.        +++++|++.+  
T Consensus        31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L~~A~~~~~~--------~~v~~Ll~~g--   99 (240)
T 3eu9_A           31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG-GDLNSTPLHWATRQGHL--------SMVVQLMKYG--   99 (240)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB-TTTTBCHHHHHHHHTCH--------HHHHHHHHTT--
T ss_pred             cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc-CCcCCChhHHHHHcCCH--------HHHHHHHHcC--
Confidence            344455666789999999999999999999999887544333 56689999999999999        9999999998  


Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCC-hHHHHHHHhhcCCCccccCC-CC
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGH-KNTFQYLLEVTHGVDIYSGN-DG  161 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~-~g  161 (227)
                      ++++..+..|.||||+|+..++.+++++|++++.+ ++..+..|.||||+|+..++ .+++++|++.+++++ ..+. .|
T Consensus       100 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~-~~~~~~g  177 (240)
T 3eu9_A          100 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN-LGDKYHK  177 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT-CCCTTTC
T ss_pred             CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc-hhhccCC
Confidence            88888999999999999999999999999999998 68899999999999997766 889999999999998 6665 89


Q ss_pred             ccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          162 ARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       162 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      .||||+|+..|+.+++++|++. +.+.+.+|..|.||+++|++.+
T Consensus       178 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          178 NTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999999988 5666799999999999999843

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.8e-33  Score=202.85  Aligned_cols=170  Identities=12%  Similarity=0.010  Sum_probs=151.6

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGY   94 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   94 (227)
                      +.+|||.|+..|+.+.++.+++.++..++.+ +..|.||||+|+..|+.        +++++|++.+  ++++..+..|.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~~~g~   70 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEI--------ETVRFLLEWG--ADPHILAKERE   70 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHHT--CCTTCCCTTCC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCchhhcccCC
Confidence            4589999999999999999999988666666 88999999999999999        9999999999  88999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      ||||+|+..++.+++++|++++.+ ++.++..|.||||+|+..++.+++++|++.|++++ .++..|.||||+|+..++.
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~  148 (172)
T 3v30_A           71 SALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTPMDLAVALGYR  148 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHhCcH
Confidence            999999999999999999999999 79999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccccccccH
Q 027136          175 DVALDLLKLHPTIGRDSIDSRRIV  198 (227)
Q Consensus       175 ~~~~~Ll~~~~~~~~~~~~~g~t~  198 (227)
                      +++++|++.+. ....++..|.||
T Consensus       149 ~~~~~L~~~~~-~~~~~~~~~~~p  171 (172)
T 3v30_A          149 KVQQVIENHIL-KLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHHHH-HHSCC-------
T ss_pred             HHHHHHHHHHH-HHhcccCCCCCC
Confidence            99999998844 445667777776

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.1e-33  Score=219.82  Aligned_cols=180  Identities=16%  Similarity=0.053  Sum_probs=163.2

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      +..+..|.||||+|+..|+.++++.|++.+.. ++..   +|.||||+|+..|+.        +++++|++.+  ++++.
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~---~g~t~L~~A~~~g~~--------~~v~~Ll~~g--a~~~~   90 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL---ENEFPLHQAATLEDT--------KIVKILLFSG--LDDSQ   90 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC---TTCCHHHHHTTSSSC--------HHHHHHHHTT--CCTTC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC---CCCCHHHHHHHcCCH--------HHHHHHHHCC--CCCCC
Confidence            45667899999999999999999999999863 3333   589999999999999        9999999999  88999


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCC-ChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHH
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLD-TLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLL  167 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  167 (227)
                      ++..|.||||+|+..|+.+++++|++++++ ++.++..| .||||+|+..|+.+++++|++.|++.. .. ..|.||||+
T Consensus        91 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~-~~g~t~L~~  167 (285)
T 3kea_A           91 FDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DL-AILLSCIHI  167 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC-CC-STHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc-cc-cCCccHHHH
Confidence            999999999999999999999999999999 79999999 799999999999999999999998764 22 389999999


Q ss_pred             HHHhCcHHHHHHHHHhCCCCccccccccccH-HHHHhhCC
Q 027136          168 LIAANLYDVALDLLKLHPTIGRDSIDSRRIV-LNKLAQKP  206 (227)
Q Consensus       168 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~  206 (227)
                      |+..|+.+++++|++. +.+.+.+|..|.|| ||+|+..+
T Consensus       168 A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~  206 (285)
T 3kea_A          168 TIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNK  206 (285)
T ss_dssp             HHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHT
T ss_pred             HHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcC
Confidence            9999999999999988 66678999999998 99999744

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1e-32  Score=219.53  Aligned_cols=184  Identities=16%  Similarity=0.051  Sum_probs=137.9

Q ss_pred             cCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136            7 QGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus         7 ~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      ..+..+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  +++
T Consensus        50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~g~~--------~iv~~Ll~~g--~~~  117 (351)
T 3utm_A           50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA-DVHAK-DKGGLVPLHNACSYGHY--------EVTELLLKHG--ACV  117 (351)
T ss_dssp             TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHTTCH--------HHHHHHHHTT--CCT
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCcc-CCCCCcHHHHHHHCCCH--------HHHHHHHHCC--CCC
Confidence            344556678899999999999999999988876 45455 78889999999999999        9999999988  788


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccC-------------------------------------------
Q 027136           87 ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIR-------------------------------------------  123 (227)
Q Consensus        87 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~-------------------------------------------  123 (227)
                      +..+..|.||||+|+..|+.+++++|++++.+ ++..                                           
T Consensus       118 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (351)
T 3utm_A          118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK  196 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHH
Confidence            88888889999999998888888888888765 3322                                           


Q ss_pred             -----------CCCCChHHHHHHHc---CChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCcc
Q 027136          124 -----------GGLDTLPIHEAAYK---GHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGR  189 (227)
Q Consensus       124 -----------~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~  189 (227)
                                 +..|.||||+|+..   +..+++++|++.|++++ .++..|+||||+|+..|+.+++++|++. +.+.+
T Consensus       197 ~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n  274 (351)
T 3utm_A          197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMN  274 (351)
T ss_dssp             HTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred             HHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCC
Confidence                       24455666666666   33566667777776666 6677777777777777777777777755 45556


Q ss_pred             ccccccccHHHHHhhC
Q 027136          190 DSIDSRRIVLNKLAQK  205 (227)
Q Consensus       190 ~~~~~g~t~l~~a~~~  205 (227)
                      .+|..|.||||+|+..
T Consensus       275 ~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          275 ALDSLGQTALHRAALA  290 (351)
T ss_dssp             CCCTTSCCHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHc
Confidence            6777777777777663

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=216.39  Aligned_cols=184  Identities=16%  Similarity=0.158  Sum_probs=141.3

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCcc-------cccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCC
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDA-------LTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVD   82 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~-------~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~   82 (227)
                      .+++.+.++|+.|+..|+.++|+.|++.+...       .+.. +..|.|||+.|+..+..+       .++++|++.| 
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~-------~~v~~Ll~~G-   76 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQ-------KRLAKVPASG-   76 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------CC-
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHH-------HHHHHHHHCC-
Confidence            34556789999999999999999999886532       2223 667899999999887761       5889999999 


Q ss_pred             ccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCc
Q 027136           83 PQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGA  162 (227)
Q Consensus        83 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  162 (227)
                       ++++.+|..|.||||+|+..|+.+++++|++.+++ ++..+..|.||+++|+..++.+++++|++.|++++ .++..|+
T Consensus        77 -advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~  153 (269)
T 4b93_B           77 -LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGN  153 (269)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCC
T ss_pred             -CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCC
Confidence             89999999999999999999999999999999999 78999999999999999999999999999999999 9999999


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          163 RVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       163 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ||||+|+..|+.+++++|++. +.+.+.++..|.||||+|+..+
T Consensus       154 TpL~~A~~~g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g  196 (269)
T 4b93_B          154 TPLIYACSGGHHELVALLLQH-GASINASNNKGNTALHEAVIEK  196 (269)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CHHHHHHHCCCHHHHHHHHHC-CCCCCccccCCCcHHHHHHHcC
Confidence            999999999999999999977 6667899999999999999855

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.7e-33  Score=217.34  Aligned_cols=187  Identities=15%  Similarity=0.184  Sum_probs=156.7

Q ss_pred             CchhhhcccHHHHHHHHhCCHHHHHHHHHcC---Ccccc---cccCCCCccHHHHHHHh---cCccccchhHHHHHHHHH
Q 027136            8 GEDEYYVRYWPLYRMIEKNDWRGVEDFVTNH---PDALT---AKTVAPGSSTIFHAIVE---LLVDVESDEATCLLDKLA   78 (227)
Q Consensus         8 ~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~---~~~~~---~~~~~~g~t~L~~a~~~---~~~~~~~~~~~~~~~~Ll   78 (227)
                      .+..+..|.||||.|++.|+.+.++.|++.+   ...+.   ...+..|.||||+|+..   |+.        +++++|+
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~--------~~v~~Ll   77 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN--------DTIALLL   77 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBC--------HHHHHHH
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCCh--------HHHHHHH
Confidence            3456778999999999999999999888742   11221   12267899999999987   999        9999999


Q ss_pred             hcCCccc-------cc----cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCC--------------CCChHHHH
Q 027136           79 SKVDPQT-------LA----RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGG--------------LDTLPIHE  133 (227)
Q Consensus        79 ~~~~~~~-------~~----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~l~~  133 (227)
                      +.+  ++       ++    ..+..|.||||+|+..|+.+++++|++++++ ++.++.              .|.||||+
T Consensus        78 ~~g--a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~  154 (273)
T 2pnn_A           78 DVA--RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSL  154 (273)
T ss_dssp             HHH--HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHH
T ss_pred             Hhh--ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHH
Confidence            987  43       22    2567899999999999999999999999999 688876              79999999


Q ss_pred             HHHcCChHHHHHHHh---hcCCCccccCCCCccHHHHHHHhCc---------HHHHHHHHHhCCCCc------ccccccc
Q 027136          134 AAYKGHKNTFQYLLE---VTHGVDIYSGNDGARVLLLLIAANL---------YDVALDLLKLHPTIG------RDSIDSR  195 (227)
Q Consensus       134 a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~a~~~~~---------~~~~~~Ll~~~~~~~------~~~~~~g  195 (227)
                      |+..|+.+++++|++   .|++++ .++..|+||||+|+..++         .+++++|++.+....      +.+|..|
T Consensus       155 A~~~g~~~~v~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g  233 (273)
T 2pnn_A          155 AACTNQLAIVKFLLQNSWQPADIS-ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG  233 (273)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred             HHHcCCHHHHHHHHhcccCCCCce-eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Confidence            999999999999999   999999 999999999999999888         799999998844332      3589999


Q ss_pred             ccHHHHHhhCC
Q 027136          196 RIVLNKLAQKP  206 (227)
Q Consensus       196 ~t~l~~a~~~~  206 (227)
                      .||||+|+..+
T Consensus       234 ~TpL~~A~~~g  244 (273)
T 2pnn_A          234 LTPLALAASSG  244 (273)
T ss_dssp             CCHHHHHHHTT
T ss_pred             CCHHHHHHHhC
Confidence            99999999844

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-32  Score=224.77  Aligned_cols=185  Identities=17%  Similarity=0.093  Sum_probs=154.7

Q ss_pred             cCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136            7 QGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus         7 ~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      +.+.....|.||||.|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  +++
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~-~~~~~t~L~~A~~~g~~--------~~v~~Ll~~g--~~~   73 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA-SPNVS-NVKVETPLHMAARAGHT--------EVAKYLLQNK--AKV   73 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTC-CSCCS-SSCCCCHHHHHHHHTCH--------HHHHHHHHHT--CCS
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHhCC--CCC
Confidence            344556778999999999999999999998875 44455 77889999999999999        9999999998  888


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHH
Q 027136           87 ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLL  166 (227)
Q Consensus        87 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  166 (227)
                      +.++..|.||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..|+.+++++|++.+++.+ ..+..|.||||
T Consensus        74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~  151 (437)
T 1n11_A           74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLH  151 (437)
T ss_dssp             SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHH
Confidence            88888999999999999999999999999988 68888899999999999999999999999888887 78888999999


Q ss_pred             HHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          167 LLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       167 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +|+..|+.+++++|++. +...+..+..|.||||+|+..+
T Consensus       152 ~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~  190 (437)
T 1n11_A          152 VAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHN  190 (437)
T ss_dssp             HHHHTTCHHHHHHHHHT-TCCTTCCCSSCCCHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999999877 5555688888999999988754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-32  Score=210.99  Aligned_cols=177  Identities=22%  Similarity=0.188  Sum_probs=88.0

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCC
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEH   92 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   92 (227)
                      ..|.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  .+++..+..
T Consensus        37 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~~~  104 (285)
T 1wdy_A           37 EGGWTPLHNAVQMSREDIVELLLRHGA-DPVLR-KKNGATPFLLAAIAGSV--------KLLKLFLSKG--ADVNECDFY  104 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHHTCH--------HHHHHHHHTT--CCTTCBCTT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCC-CCccc-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCccCcc
Confidence            344455555555555555555554443 22222 44455555555555555        5555555554  444445555


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCccccC----------CCCCChHHHHHHHcCChHHHHHHHhh-cCCCccccCCCC
Q 027136           93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIR----------GGLDTLPIHEAAYKGHKNTFQYLLEV-THGVDIYSGNDG  161 (227)
Q Consensus        93 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g  161 (227)
                      |.||||+|+..++.+++++|++.+.+ ++..          +..|.||||+|+..|+.+++++|++. |.+++ ..+..|
T Consensus       105 g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g  182 (285)
T 1wdy_A          105 GFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMG  182 (285)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTS
T ss_pred             cCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCC
Confidence            55555555555555555555555444 2333          44455555555555555555555544 44444 445555


Q ss_pred             ccHHHHHHHhCc----HHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          162 ARVLLLLIAANL----YDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       162 ~t~L~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      .||||.|+..++    .+++++|++. +.+.+.+|..|.||||+|+.
T Consensus       183 ~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~  228 (285)
T 1wdy_A          183 RNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             CCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHH
Confidence            555555555554    4455555543 33334555555555555554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.5e-33  Score=222.93  Aligned_cols=191  Identities=14%  Similarity=0.111  Sum_probs=169.9

Q ss_pred             CCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCC
Q 027136            3 NSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVD   82 (227)
Q Consensus         3 ~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~   82 (227)
                      +.+.+.+..+..|.||||+|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+.
T Consensus       154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~-~~~g~t~L~~A~~~g~~--------~~v~~Ll~~~~  223 (373)
T 2fo1_E          154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-DPTIY-NKSERSALHQAAANRDF--------GMMVYMLNSTK  223 (373)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCC-CTTCCCHHHHHHHTTCH--------HHHHHHTTSHH
T ss_pred             hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCC-CCccc-CCCCCCHHHHHHHCCCH--------HHHHHHHhcCc
Confidence            3455566777889999999999999999999999986 44455 88999999999999999        99999999761


Q ss_pred             -ccccccCCCCCCcHHHHHHhcC---CHHHHHHHHHcCCCcccc--------CCCCCChHHHHHHHcCChHHHHHHHhhc
Q 027136           83 -PQTLARQDEHGYTALFLCAGKG---NLRALKVLVKCNPNLTNI--------RGGLDTLPIHEAAYKGHKNTFQYLLEVT  150 (227)
Q Consensus        83 -~~~~~~~~~~~~t~L~~a~~~~---~~~~~~~Ll~~~~~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  150 (227)
                       ..+++..+..|.||||+|+..+   +.+++++|++.+.+ ++.        .+..|.||||+|+..|+.+++++|++.+
T Consensus       224 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~  302 (373)
T 2fo1_E          224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK  302 (373)
T ss_dssp             HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS
T ss_pred             cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc
Confidence             1467888999999999999988   89999999999988 454        6778999999999999999999999886


Q ss_pred             -CCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          151 -HGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       151 -~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                       ++++ .++..|+||||+|+..|+.+++++|++. +++.+.+|..|.|||++|+.++
T Consensus       303 ~~~~n-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          303 GSNKD-KQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANN  357 (373)
T ss_dssp             CCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTT
T ss_pred             CCCcc-CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHHcC
Confidence             8898 9999999999999999999999999987 6677899999999999999843

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.2e-32  Score=217.59  Aligned_cols=187  Identities=13%  Similarity=0.006  Sum_probs=166.2

Q ss_pred             CCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCC
Q 027136            3 NSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVD   82 (227)
Q Consensus         3 ~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~   82 (227)
                      +.+...+..+..|.||||+|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+ 
T Consensus        79 ~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g-  147 (351)
T 3utm_A           79 QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA-CVNAM-DLWQFTPLHEAASKNRV--------EVCSLLLSHG-  147 (351)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHTTCH--------HHHHHHHHTT-
T ss_pred             HcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC-
Confidence            3445556677889999999999999999999999976 45455 88899999999999999        9999999998 


Q ss_pred             ccccccC------------------------------------------------------CCCCCcHHHHHHhc---CC
Q 027136           83 PQTLARQ------------------------------------------------------DEHGYTALFLCAGK---GN  105 (227)
Q Consensus        83 ~~~~~~~------------------------------------------------------~~~~~t~L~~a~~~---~~  105 (227)
                       ++++..                                                      +..|.||||+|+..   +.
T Consensus       148 -~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~  226 (351)
T 3utm_A          148 -ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR  226 (351)
T ss_dssp             -CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTH
T ss_pred             -CCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccH
Confidence             555543                                                      34567999999988   56


Q ss_pred             HHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCC
Q 027136          106 LRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       106 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      .+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++. +
T Consensus       227 ~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g  303 (351)
T 3utm_A          227 KQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-ALDSLGQTALHRAALAGHLQTCRLLLSY-G  303 (351)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHT-T
T ss_pred             HHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHc-C
Confidence            8999999999999 79999999999999999999999999999999999 9999999999999999999999999977 6


Q ss_pred             CCccccccccccHHHHHhh
Q 027136          186 TIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       186 ~~~~~~~~~g~t~l~~a~~  204 (227)
                      .+.+.+|..|.||+++|..
T Consensus       304 ad~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          304 SDPSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             CCTTCCCTTSCCHHHHSCH
T ss_pred             CCCCCcCCCCCChhhhhhH
Confidence            6678999999999999843

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.5e-32  Score=219.02  Aligned_cols=182  Identities=11%  Similarity=-0.031  Sum_probs=161.9

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      +..+..|.||||+|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  ++  .
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~-d~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--~~--~   79 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGV-SPTIQ-NRFGCTALHLACKFGCV--------DTAKYLASVG--EV--H   79 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTCCCHHHHHHHHCCH--------HHHHHHHHHC--CC--C
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-Ccccc-CCCCCcHHHHHHHcCCH--------HHHHHHHHCC--CC--c
Confidence            3456779999999999999999999999876 45566 88999999999999999        9999999999  53  3


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHc----CCCcccc-----------------CCCCCChHHHHHHHcC--ChHHHHH
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKC----NPNLTNI-----------------RGGLDTLPIHEAAYKG--HKNTFQY  145 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~----~~~~~~~-----------------~~~~g~t~l~~a~~~~--~~~~~~~  145 (227)
                      .+..|.||||+|+..|+.+++++|++.    +.+ ++.                 .+..|.||||+|+..|  +.+++++
T Consensus        80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~  158 (364)
T 3ljn_A           80 SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI  158 (364)
T ss_dssp             CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            345789999999999999999999999    666 455                 7889999999999999  9999999


Q ss_pred             HHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCC----ccccccccccHHHHHhhCC
Q 027136          146 LLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTI----GRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       146 Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~----~~~~~~~g~t~l~~a~~~~  206 (227)
                      |++.|++++ ..+..|.||||+|+..|+.+++++|++.+...    .+.+|..|.||||+|+..+
T Consensus       159 Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g  222 (364)
T 3ljn_A          159 LVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN  222 (364)
T ss_dssp             HHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred             HHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcC
Confidence            999999999 99999999999999999999999999885441    6788999999999999855

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.7e-32  Score=200.14  Aligned_cols=160  Identities=19%  Similarity=0.116  Sum_probs=129.7

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      ..+..|.||||.|+..|+.++++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  ++++..
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~   97 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDK-DIEGSTALIWAVKNNRL--------GIAEKLLSKG--SNVNTK   97 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHHT--CCTTCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccccc-cccCccHHHHHHHcCCH--------HHHHHHHHCC--CCCCCC
Confidence            345667888888888888888888888765 34344 67788888888888888        8888888888  777788


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  169 (227)
                      +..|.||||+|+..++.+++++|++++++ ++.++..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~  175 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASAR  175 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHH
Confidence            88888888888888888888888888887 67788888888888888888888888888888888 78888888888888


Q ss_pred             HhCcHHHHHHHHHh
Q 027136          170 AANLYDVALDLLKL  183 (227)
Q Consensus       170 ~~~~~~~~~~Ll~~  183 (227)
                      ..|+.+++++|++.
T Consensus       176 ~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          176 IFGRQEVIKIFTEV  189 (192)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHhc
Confidence            88888888888765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=7.1e-33  Score=212.34  Aligned_cols=192  Identities=17%  Similarity=0.164  Sum_probs=159.5

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHH----cCCcccccc---cCCCCccHHHHHH---HhcCccccchhHHHHHHHHHhcC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVT----NHPDALTAK---TVAPGSSTIFHAI---VELLVDVESDEATCLLDKLASKV   81 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~----~~~~~~~~~---~~~~g~t~L~~a~---~~~~~~~~~~~~~~~~~~Ll~~~   81 (227)
                      +..+.++||.|++.|+.+.++.+++    .+. .++..   .+..|.||||+|+   ..|+.        +++++|++.+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~g~~--------~~v~~Ll~~g   72 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRN--------DTIPILLDIA   72 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSCTTTCCCHHHHHHTSCBTTBC--------THHHHHHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcchhhhhccCCCCcHHHHHHHHhhcCCH--------HHHHHHHHhc
Confidence            3468899999999999997666665    554 33222   1367999999999   67999        9999999987


Q ss_pred             Cccc-----------cccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC--------------CCCChHHHHHHH
Q 027136           82 DPQT-----------LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG--------------GLDTLPIHEAAY  136 (227)
Q Consensus        82 ~~~~-----------~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~a~~  136 (227)
                        ++           .+..|..|.||||+|+..|+.+++++|++++++ ++..+              ..|.||||+|+.
T Consensus        73 --~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  149 (260)
T 3jxi_A           73 --EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAAC  149 (260)
T ss_dssp             --HHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred             --ccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHH
Confidence              33           344556899999999999999999999999999 68887              689999999999


Q ss_pred             cCChHHHHHHHh---hcCCCccccCCCCccHHHHHHHhCc---------HHHHHHHHHhCCCCc------cccccccccH
Q 027136          137 KGHKNTFQYLLE---VTHGVDIYSGNDGARVLLLLIAANL---------YDVALDLLKLHPTIG------RDSIDSRRIV  198 (227)
Q Consensus       137 ~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~a~~~~~---------~~~~~~Ll~~~~~~~------~~~~~~g~t~  198 (227)
                      .|+.+++++|++   .|++++ .++..|+||||+|+..++         .+++++|++.+....      +.+|..|.||
T Consensus       150 ~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp  228 (260)
T 3jxi_A          150 TNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP  228 (260)
T ss_dssp             TTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH
T ss_pred             cCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH
Confidence            999999999999   899999 999999999999998877         689999998843321      5799999999


Q ss_pred             HHHHhhCCCcCCCCCcchhHhhhhh
Q 027136          199 LNKLAQKPYAFASGSRLGRLQRLIY  223 (227)
Q Consensus       199 l~~a~~~~~~~~~~~~~~~~~~~~~  223 (227)
                      ||+|+..       ....+.+.|+-
T Consensus       229 L~~A~~~-------g~~~~v~~Ll~  246 (260)
T 3jxi_A          229 LMMAAKT-------GKIGIFQHIIR  246 (260)
T ss_dssp             HHHHHHT-------TCHHHHHHHHH
T ss_pred             HHHHHHc-------CCHHHHHHHHH
Confidence            9999994       44555555543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=7.1e-32  Score=193.53  Aligned_cols=158  Identities=14%  Similarity=0.117  Sum_probs=148.9

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      .|.||||.|+..|+.+.++.+++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  .+++..+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~~~g   69 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQEN-VINHT-DEEGFTPLMWAAAHGQI--------AVVEFLLQNG--ADPQLLGKGR   69 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSS-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCCTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCC-CcCCC-CCCCCCHHHHHHHCCCH--------HHHHHHHHcC--CCCCCcCCCC
Confidence            47899999999999999999999975 45556 88999999999999999        9999999999  8899999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCc
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANL  173 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~  173 (227)
                      .||||+|+..++.+++++|++++++ ++.++..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+..|+
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           70 ESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-IETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCc
Confidence            9999999999999999999999999 79999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 027136          174 YDVALDLLKLHP  185 (227)
Q Consensus       174 ~~~~~~Ll~~~~  185 (227)
                      .+++++|++...
T Consensus       148 ~~~~~~L~~~~~  159 (167)
T 3v31_A          148 RSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998743

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.5e-31  Score=192.38  Aligned_cols=159  Identities=23%  Similarity=0.169  Sum_probs=147.3

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD   90 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~   90 (227)
                      ....+.++|+.|++.|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  .+++..+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~   77 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGA-DVNAE-DASGWTPLHLAAFNGHL--------EIVEVLLKNG--ADVNAVD   77 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCccC
Confidence            34567899999999999999999999876 45455 88999999999999999        9999999999  8899999


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHH
Q 027136           91 EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIA  170 (227)
Q Consensus        91 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~  170 (227)
                      ..|.||||+|+..++.+++++|++++++ ++.++..|.||||+|+..++.+++++|++.|++++ .++..|.|||++|+.
T Consensus        78 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~  155 (169)
T 2y1l_E           78 HAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISID  155 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence            9999999999999999999999999999 78999999999999999999999999999999999 999999999999999


Q ss_pred             hCcHHHHHHHHHh
Q 027136          171 ANLYDVALDLLKL  183 (227)
Q Consensus       171 ~~~~~~~~~Ll~~  183 (227)
                      .++.+++++|++.
T Consensus       156 ~~~~~~~~~L~~~  168 (169)
T 2y1l_E          156 NGNEDLAEILQKL  168 (169)
T ss_dssp             TTCHHHHHHHHTC
T ss_pred             hCCHHHHHHHHHc
Confidence            9999999999865

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.6e-31  Score=200.21  Aligned_cols=169  Identities=18%  Similarity=0.172  Sum_probs=156.8

Q ss_pred             CCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc
Q 027136            4 SDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      .+...+..+..|.||||.|+..|+.++++.|++.++..++.. +..|.||||+|+..++.        +++++|++.+  
T Consensus        47 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g--  115 (223)
T 2f8y_A           47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVE--------GMLEDLINSH--  115 (223)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC-CTTCCCHHHHHHHHTCH--------HHHHHHHHTT--
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCcHHHHHHHhCcH--------HHHHHHHHcC--
Confidence            344555667889999999999999999999999987666566 88999999999999999        9999999999  


Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCcc
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGAR  163 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  163 (227)
                      .+++..+..|.||||+|+..++.+++++|++++++ ++.++..|.||||+|+..++.+++++|++.|++++ .++..|.|
T Consensus       116 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t  193 (223)
T 2f8y_A          116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD-ITDHMDRL  193 (223)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCC
T ss_pred             CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-cccccCCC
Confidence            88999999999999999999999999999999999 79999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhCC
Q 027136          164 VLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       164 ~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      ||++|+..++.+++++|++.+.
T Consensus       194 ~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          194 PRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHhcchHHHHHHHHcCC
Confidence            9999999999999999997744

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.2e-31  Score=192.73  Aligned_cols=142  Identities=20%  Similarity=0.198  Sum_probs=135.7

Q ss_pred             cHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHH
Q 027136           52 STIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPI  131 (227)
Q Consensus        52 t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  131 (227)
                      ++|+.|++.|+.        +++++|++.|  ++++.+|..|.||||+|+..++.+++++|++.+++ ++.+|..|.|||
T Consensus         6 ~~L~~Aa~~G~~--------~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpL   74 (169)
T 4gpm_A            6 KRLIEAAENGNK--------DRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPL   74 (169)
T ss_dssp             HHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             HHHHHHHHcCCH--------HHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHH
Confidence            479999999999        9999999999  99999999999999999999999999999999999 799999999999


Q ss_pred             HHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          132 HEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       132 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++. +.+.+.+|..|+|||++|+.++
T Consensus        75 h~A~~~g~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g  147 (169)
T 4gpm_A           75 HHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHG  147 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcC
Confidence            99999999999999999999999 9999999999999999999999999977 6667899999999999999854

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1e-32  Score=222.20  Aligned_cols=180  Identities=12%  Similarity=0.055  Sum_probs=163.9

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHH--------HcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFV--------TNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll--------~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      ..|.||||+|+..|+.++++.|+        +.+. .++.. +..|.||||+|+..|+.        +++++|++.+  +
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga-~vn~~-d~~g~TpL~~A~~~g~~--------~iv~~Ll~~g--a  190 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAM-DCDENTPLMLAVLARRR--------RLVAYLMKAG--A  190 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-CTTCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--C
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC-CCcCC-CCCCCCHHHHHHHcChH--------HHHHHHHHCC--C
Confidence            57999999999999998888776        4444 55566 88999999999999999        9999999999  8


Q ss_pred             ccccCCCCCCcHHHHHHhcCCHHHHHHHHHcC---CCccccCCCCCChHHHHHHHcC---ChHHHHHHHhhcCCCccc--
Q 027136           85 TLARQDEHGYTALFLCAGKGNLRALKVLVKCN---PNLTNIRGGLDTLPIHEAAYKG---HKNTFQYLLEVTHGVDIY--  156 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~~--  156 (227)
                      +++..+..|.||||+|+..|+.+++++|++.+   .+ ++..+..|.||||+|+..+   +.+++++|++.|++++ .  
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~-~~~  268 (373)
T 2fo1_E          191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD-YDG  268 (373)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSS-CCS
T ss_pred             CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcc-ccc
Confidence            99999999999999999999999999999987   56 6889999999999999998   8999999999999987 4  


Q ss_pred             ------cCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          157 ------SGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       157 ------~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                            .+..|.||||+|+..|+.+++++|++.++.+.+.+|..|.||||+|+..+
T Consensus       269 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g  324 (373)
T 2fo1_E          269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG  324 (373)
T ss_dssp             GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence                  56789999999999999999999999987888999999999999999854

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-32  Score=208.01  Aligned_cols=185  Identities=14%  Similarity=0.072  Sum_probs=163.0

Q ss_pred             CchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc----
Q 027136            8 GEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP----   83 (227)
Q Consensus         8 ~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~----   83 (227)
                      .+..+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+..    
T Consensus        38 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~~~~~~~~  107 (236)
T 1ikn_D           38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELR-DFRGNTPLHLACEQGCL--------ASVGVLTQSCTTPHLH  107 (236)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCC-CTTCCCHHHHHHHHTCH--------HHHHHHHHSTTTTSSS
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCc-CCCCCCHHHHHHHcCCH--------HHHHHHHhcccchhHH
Confidence            45667789999999999999999999998876 45455 88999999999999999        999999999821    


Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCC-CCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCc
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGG-LDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGA  162 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  162 (227)
                      ..++..+..|.||||+|+..|+.+++++|++++++ ++.++. .|.||||+|+..|+.+++++|++.|++++ .++..|.
T Consensus       108 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~  185 (236)
T 1ikn_D          108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGY  185 (236)
T ss_dssp             CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCC
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccCCCC
Confidence            22567788899999999999999999999999999 688887 99999999999999999999999999999 9999999


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhCCC-CccccccccccHHHHHhh
Q 027136          163 RVLLLLIAANLYDVALDLLKLHPT-IGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       163 t~L~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~a~~  204 (227)
                      ||||+|+..++.+++++|++.+.. ....++..|.||.+.+..
T Consensus       186 tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          186 SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             CGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             CHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            999999999999999999988553 234778889999887654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-32  Score=216.36  Aligned_cols=182  Identities=14%  Similarity=0.020  Sum_probs=148.3

Q ss_pred             CCCCCcCch-hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcC---ccccchhHHHHHHHH
Q 027136            2 INSDDQGED-EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELL---VDVESDEATCLLDKL   77 (227)
Q Consensus         2 ~~~~~~~~~-~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~~~~~~~~~L   77 (227)
                      ++.+.+.+. .+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+   .        ++++.|
T Consensus       117 ~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga-d~n~~-d~~g~TpLh~A~~~g~~~~~--------~~~~~l  186 (327)
T 1sw6_A          117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-NRLYG-DNMGESCLVKAVKSVNNYDS--------GTFEAL  186 (327)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTBC-CTTCCCHHHHHHHSSHHHHT--------TCHHHH
T ss_pred             HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCc-CCCCCCHHHHHHHhcccccH--------HHHHHH
Confidence            445555566 67889999999999999999999999986 55566 8899999999999998   7        677777


Q ss_pred             HhcCCccccccCCCCCCcHHHHHHh----cCCHHHHHHHHHc--------------------CCCccccCCCCCChHHHH
Q 027136           78 ASKVDPQTLARQDEHGYTALFLCAG----KGNLRALKVLVKC--------------------NPNLTNIRGGLDTLPIHE  133 (227)
Q Consensus        78 l~~~~~~~~~~~~~~~~t~L~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~~~~g~t~l~~  133 (227)
                      ++.+ ..+++.++..|.||||+|+.    .|+.+++++|++.                    +.+ ++.++..|.||||+
T Consensus       187 l~~~-~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~  264 (327)
T 1sw6_A          187 LDYL-YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILE  264 (327)
T ss_dssp             HHHH-GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHH
T ss_pred             HHhh-hccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHH
Confidence            7775 25688899999999999998    8999999999987                    666 68899999999999


Q ss_pred             HHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          134 AAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       134 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      |+.      +++|++.  +++ .++..|+||||+|+..|+.+++++|++. +++.+.+|..|+||||+|+++
T Consensus       265 a~~------~~~Ll~~--~~n-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          265 NLD------LKWIIAN--MLN-AQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HCS------HHHHHHH--TTT-CCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHH------HHHHHHh--CCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhc
Confidence            985      8889988  466 8899999999999999999999999977 677789999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=3.7e-32  Score=194.62  Aligned_cols=159  Identities=19%  Similarity=0.138  Sum_probs=146.8

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDE   91 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~   91 (227)
                      +..+.++|+.|++.|+.+.++.+++..+...... +..|.||||+|+..|+.        +++++|++.+  .+++.++.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~~   73 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRV--------SVVEYLLQHG--ADVHAKDK   73 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCCT
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChH--------HHHHHHHhcC--CCCCccCC
Confidence            4568899999999999999999998776555455 78899999999999999        9999999999  88999999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHh
Q 027136           92 HGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAA  171 (227)
Q Consensus        92 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~  171 (227)
                      .|.||||+|+..++.+++++|++++.+ ++.+|..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+. 
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~a~~-  150 (165)
T 3twr_A           74 GGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD-  150 (165)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTGGGSCT-
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCChhHhHhc-
Confidence            999999999999999999999999999 79999999999999999999999999999999999 999999999999877 


Q ss_pred             CcHHHHHHHHHhC
Q 027136          172 NLYDVALDLLKLH  184 (227)
Q Consensus       172 ~~~~~~~~Ll~~~  184 (227)
                      ++.+++++|++.+
T Consensus       151 ~~~~i~~~L~~~g  163 (165)
T 3twr_A          151 GDTDIQDLLRGDA  163 (165)
T ss_dssp             TCHHHHHHHHTC-
T ss_pred             CChHHHHHHhhcc
Confidence            8899999999763

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=1.1e-31  Score=202.23  Aligned_cols=170  Identities=14%  Similarity=0.145  Sum_probs=151.3

Q ss_pred             CCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCccc----ccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhc
Q 027136            5 DDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDAL----TAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASK   80 (227)
Q Consensus         5 ~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~----~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~   80 (227)
                      +...+..+..|.||||+|+..|+.++++.|++.++...    ... +..|.||||+|+..|+.        +++++|++.
T Consensus        27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~   97 (232)
T 2rfa_A           27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE-LYEGQTALHIAVINQNV--------NLVRALLAR   97 (232)
T ss_dssp             CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCST-TTTTCCHHHHHHHTTCH--------HHHHHHHHT
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccccccc-CCCCcCHHHHHHHcCCH--------HHHHHHHhC
Confidence            44556677889999999999999999999999987532    223 67899999999999999        999999999


Q ss_pred             CCccccccCCC-------------CCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHH----
Q 027136           81 VDPQTLARQDE-------------HGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTF----  143 (227)
Q Consensus        81 ~~~~~~~~~~~-------------~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~----  143 (227)
                      +  ++++..+.             .|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..++.+++    
T Consensus        98 g--~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~  174 (232)
T 2rfa_A           98 G--ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMY  174 (232)
T ss_dssp             T--CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHH
T ss_pred             C--CCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHH
Confidence            9  77776654             799999999999999999999999999 799999999999999999999888    


Q ss_pred             HHHHhhcCCCc-----cccCCCCccHHHHHHHhCcHHHHHHHHHhCCC
Q 027136          144 QYLLEVTHGVD-----IYSGNDGARVLLLLIAANLYDVALDLLKLHPT  186 (227)
Q Consensus       144 ~~Ll~~~~~~~-----~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  186 (227)
                      ++|++.|++..     +.++..|+||||+|+..|+.+++++|+++++.
T Consensus       175 ~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999998873     27899999999999999999999999988544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.98  E-value=2.7e-31  Score=210.88  Aligned_cols=181  Identities=19%  Similarity=0.160  Sum_probs=155.2

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcc--------------------------------cccccCCCCccHHHHHHHh
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDA--------------------------------LTAKTVAPGSSTIFHAIVE   60 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~--------------------------------~~~~~~~~g~t~L~~a~~~   60 (227)
                      ..|.||||+|+..|+.++++.|++.+...                                ++.. +..|.||||+|+..
T Consensus        57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~  135 (337)
T 4g8k_A           57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVY  135 (337)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhh-ccCCCCHHHHHHHc
Confidence            45889999999999999999988876421                                2223 67788999999999


Q ss_pred             cCccccchhHHHHHHHHHhcCCcccccc----------CCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCccccCCCCCCh
Q 027136           61 LLVDVESDEATCLLDKLASKVDPQTLAR----------QDEHGYTALFLCAGKGNLRALKVLVKC-NPNLTNIRGGLDTL  129 (227)
Q Consensus        61 ~~~~~~~~~~~~~~~~Ll~~~~~~~~~~----------~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t  129 (227)
                      |+.        +++++|++.+  ++++.          .+..|.||||+|+..|+.+++++|+++ +.+ ++.++..|.|
T Consensus       136 ~~~--------~~~~~ll~~g--a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t  204 (337)
T 4g8k_A          136 GKV--------KALKFLYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRN  204 (337)
T ss_dssp             TCH--------HHHHHHHHTT--CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCC
T ss_pred             CcH--------HHHHHHHHcC--CCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCc
Confidence            999        9999999998  55543          345689999999999999999999975 777 7999999999


Q ss_pred             HHHHHHHcCC----hHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          130 PIHEAAYKGH----KNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       130 ~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      |++.++..+.    ..++++|++.|++++ .++..|+||||+|+..|+.++++.|++..+.+.+.+|..|+||||+|+..
T Consensus       205 ~l~~~~~~~~~~~~~~i~~lLl~~gad~n-~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          205 ALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  283 (337)
T ss_dssp             HHHHHHHHSCTTTHHHHHHHHHHTTCCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence            9998877654    358899999999999 99999999999999999999999999887888899999999999999985


Q ss_pred             C
Q 027136          206 P  206 (227)
Q Consensus       206 ~  206 (227)
                      +
T Consensus       284 g  284 (337)
T 4g8k_A          284 K  284 (337)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=1.6e-31  Score=190.63  Aligned_cols=156  Identities=17%  Similarity=0.175  Sum_probs=145.0

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      ...+|||.|+..|+.+.++.|++.+. .++.+ +..|.||||+|+. |+.        +++++|++.+  .+++.++..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~-~~~g~t~L~~A~~-~~~--------~~v~~Ll~~g--~~~~~~~~~g   70 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNV-NVNAQ-NGFGRTALQVMKL-GNP--------EIARRLLLRG--ANPDLKDRTG   70 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCC-CTTCC-CTTSCCHHHHCCS-SCH--------HHHHHHHHTT--CCTTCCCTTS
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCC-Ccccc-CccCccHHHHHHc-CcH--------HHHHHHHHcC--CCCCCCCCCC
Confidence            45699999999999999999998876 45455 8889999999999 999        9999999999  8899999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCC-ccccCCCCccHHHHHHHhC
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGV-DIYSGNDGARVLLLLIAAN  172 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~~~g~t~L~~a~~~~  172 (227)
                      .||||+|+..++.+++++|++++.+ ++.++..|.||||+|+..|+.+++++|++.|++. + ..+..|.||||+|+..|
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~l~~A~~~~  148 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG-HRNHKGDTACDLARLYG  148 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC-CcCCCCCcHHHHHHHcC
Confidence            9999999999999999999999998 7999999999999999999999999999999984 6 89999999999999999


Q ss_pred             cHHHHHHHHHhC
Q 027136          173 LYDVALDLLKLH  184 (227)
Q Consensus       173 ~~~~~~~Ll~~~  184 (227)
                      +.+++++|++.+
T Consensus       149 ~~~~~~~Ll~~G  160 (162)
T 1ihb_A          149 RNEVVSLMQANG  160 (162)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhC
Confidence            999999999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=4.4e-31  Score=186.81  Aligned_cols=151  Identities=17%  Similarity=0.095  Sum_probs=142.1

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGY   94 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   94 (227)
                      ..++|+.|++.|+.+.++.|++.+...  .. +..|.||||+|+..|+.        +++++|++.+  .+++..+..|.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~--~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~~~g~   68 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF--TT-DWLGTSPLHLAAQYGHF--------STTEVLLRAG--VSRDARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC--CC-CTTCCCHHHHHHHHTCH--------HHHHHHHTTT--CCTTCCCTTCC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC--Cc-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCCCCCCCC
Confidence            468999999999999999999998633  23 78899999999999999        9999999999  88999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      ||||+|+..++.+++++|++++++ ++.++..|.||||+|+..++.+++++|++.|++++ .++..|.||||+|+..|+.
T Consensus        69 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           69 TPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999 79999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHH
Q 027136          175 DVALDL  180 (227)
Q Consensus       175 ~~~~~L  180 (227)
                      +++++|
T Consensus       147 ~i~~~L  152 (153)
T 1awc_B          147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999976

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=2.9e-32  Score=211.00  Aligned_cols=178  Identities=12%  Similarity=0.109  Sum_probs=160.3

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCc-ccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc-ccccCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPD-ALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ-TLARQDEH   92 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~-~~~~~~~~   92 (227)
                      ..+++|.|+..|+.+.++.++....+ .++.+ +..|.||||+|+..|+.        +++++|++.+  + +++..+..
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~--------~~v~~Ll~~g--~~~~~~~~~~  144 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANF--------PVVQQLLDSG--VCKVDKQNRA  144 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTS--CCCTTCCCTT
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCH--------HHHHHHHHCC--CCcCCCCCCC
Confidence            45778889999999999988876543 24444 88999999999999999        9999999999  5 88899999


Q ss_pred             CCcHHHHHH-----hcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHH
Q 027136           93 GYTALFLCA-----GKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLL  167 (227)
Q Consensus        93 ~~t~L~~a~-----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  167 (227)
                      |.||||+|+     ..++.+++++|++.+.. .+..+..|.||||+|+..|+.+++++|++.|++++ .++..|+||||+
T Consensus       145 g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d~~G~TpLh~  222 (276)
T 4hbd_A          145 GYSPIMLTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTALMC  222 (276)
T ss_dssp             SCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             CCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHH
Confidence            999999999     67889999999999987 68888899999999999999999999999999999 999999999999


Q ss_pred             HHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          168 LIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       168 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      |+..|+.+++++|++..+.+.+.+|..|.||||+|+..
T Consensus       223 A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             HHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHc
Confidence            99999999999999856888889999999999999984

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=1.4e-31  Score=194.19  Aligned_cols=161  Identities=15%  Similarity=0.110  Sum_probs=149.5

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      .+.++|+.|+..|+.+.++.+++.++..++.. +..|.||||+|+..|+.        +++++|++.+  ++++..+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~~~g   72 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRS--------AVVEMLIMRG--ARINVMNRGD   72 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcH--------HHHHHHHHcC--CCCCCcCCCC
Confidence            47799999999999999999999977667666 88999999999999999        9999999999  8899999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCc
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANL  173 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~  173 (227)
                      .||||+|+..++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|++.|++++ .++..|.|||++|+..++
T Consensus        73 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A           73 DTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTSCCGGGGSCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCCCCcHHHHHHHHH
Confidence            9999999999999999999999999 79999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027136          174 YDVALDLLKLHPTI  187 (227)
Q Consensus       174 ~~~~~~Ll~~~~~~  187 (227)
                      .+++++|++.+...
T Consensus       151 ~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          151 ELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhhcCc
Confidence            99999999774443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.98  E-value=4.5e-31  Score=187.20  Aligned_cols=154  Identities=21%  Similarity=0.184  Sum_probs=143.8

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGY   94 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   94 (227)
                      +.++||.|+..|+.+.++.+++..+..++.. +..|.||||+ +..|+.        +++++|++.+  ++++.++..|.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~--------~~v~~Ll~~g--~~~~~~~~~g~   69 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGST--------AIALELLKQG--ASPNVQDTSGT   69 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCH--------HHHHHHHHTT--CCTTCCCTTSC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCH--------HHHHHHHHCC--CCCCCcCCCCC
Confidence            5699999999999999999999854455555 8889999999 999999        9999999999  88999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      ||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++. ++++ .++..|.||||+|+..|+.
T Consensus        70 t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           70 SPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHHHHHHSCCH
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHHHHHHcCcH
Confidence            999999999999999999999998 799999999999999999999999999999 8888 9999999999999999999


Q ss_pred             HHHHHHHHh
Q 027136          175 DVALDLLKL  183 (227)
Q Consensus       175 ~~~~~Ll~~  183 (227)
                      +++++|+++
T Consensus       147 ~~v~~Ll~~  155 (156)
T 1bd8_A          147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=5.3e-31  Score=194.29  Aligned_cols=164  Identities=15%  Similarity=0.153  Sum_probs=150.1

Q ss_pred             cCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136            7 QGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus         7 ~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      ..+..+..|.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+ +.++
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~~g~t~l~~A~~~~~~--------~~~~~Ll~~~-~~~~   99 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-DINLQ-NSISDSPYLYAGAQGRT--------EILAYMLKHA-TPDL   99 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHHS-CCCT
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHhcc-Cccc
Confidence            445566789999999999999999999999976 45455 88899999999999999        9999999655 2788


Q ss_pred             ccCCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCccccCCCCCChHHHHHHHcCC-----hHHHHHHHhhcCCCccccCCC
Q 027136           87 ARQDEHGYTALFLCAGKGNLRALKVLVKCN-PNLTNIRGGLDTLPIHEAAYKGH-----KNTFQYLLEVTHGVDIYSGND  160 (227)
Q Consensus        87 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~~~~  160 (227)
                      +..+..|.||||+|+..++.+++++|++.+ .+ ++.++..|.||||+|+..+.     .+++++|++.|++++ .++..
T Consensus       100 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~-~~~~~  177 (201)
T 3hra_A          100 NKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS-IKDNS  177 (201)
T ss_dssp             TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC-TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT-CCCTT
T ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC-ccCCC
Confidence            899999999999999999999999999999 66 79999999999999999998     899999999999999 99999


Q ss_pred             CccHHHHHHHhCcHHHHHHHHHh
Q 027136          161 GARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       161 g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                      |+||||+|+..|+.+++++|++.
T Consensus       178 g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          178 GRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             CCCHHHHHHHcCCHhHHHHHHhc
Confidence            99999999999999999999965

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=4.2e-31  Score=204.43  Aligned_cols=164  Identities=18%  Similarity=0.211  Sum_probs=151.9

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHH-----HhcCccccchhHHHHHHHHHhcCCc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAI-----VELLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~-----~~~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      +..+..|.||||+|+..|+.++++.|++.+...++.. +..|.||||+|+     ..++.        +++++|++.+  
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~~~~~~~~~~--------~~v~~Ll~~g--  173 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTALATLKTQDDI--------ETVLQLFRLG--  173 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGGCCCCSHHHH--------HHHHHHHHHS--
T ss_pred             cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHHHHhhhhhhH--------HHHHHHHHcC--
Confidence            3446679999999999999999999999987566566 889999999999     66777        9999999999  


Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHh-hcCCCccccCCCCc
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE-VTHGVDIYSGNDGA  162 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~  162 (227)
                      ...+..+..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++ .|++++ .++..|+
T Consensus       174 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~  251 (276)
T 4hbd_A          174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS-LTDRDGS  251 (276)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT-CCCTTSC
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc-CcCCCCC
Confidence            77888889999999999999999999999999999 79999999999999999999999999999 899999 9999999


Q ss_pred             cHHHHHHHhCcHHHHHHHHHhCC
Q 027136          163 RVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       163 t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      ||||+|+..|+.+++++|+++.+
T Consensus       252 TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          252 TALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhccC
Confidence            99999999999999999998843

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.3e-31  Score=203.91  Aligned_cols=179  Identities=12%  Similarity=0.089  Sum_probs=147.1

Q ss_pred             hhhcccHHHHHHHHh---CCHHHHHHHHHcCCcc------ccc---ccCCCCccHHHHHHHhcCccccchhHHHHHHHHH
Q 027136           11 EYYVRYWPLYRMIEK---NDWRGVEDFVTNHPDA------LTA---KTVAPGSSTIFHAIVELLVDVESDEATCLLDKLA   78 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~---g~~~~v~~ll~~~~~~------~~~---~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll   78 (227)
                      .+..|.||||+|+..   |+.++++.|++.+...      ++.   ..+..|.||||+|+..|+.        +++++|+
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~--------~~v~~Ll  121 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM--------TLVTLLV  121 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCH--------HHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCH--------HHHHHHH
Confidence            356799999999987   9999999999986421      111   1156899999999999999        9999999


Q ss_pred             hcCCccccccCCC--------------CCCcHHHHHHhcCCHHHHHHHHH---cCCCccccCCCCCChHHHHHHHcCC--
Q 027136           79 SKVDPQTLARQDE--------------HGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGH--  139 (227)
Q Consensus        79 ~~~~~~~~~~~~~--------------~~~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~--  139 (227)
                      +.+  ++++..+.              .|.||||+|+..|+.+++++|++   .+.+ ++.+|..|.||||+|+..++  
T Consensus       122 ~~g--a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~  198 (273)
T 2pnn_A          122 ENG--ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNT  198 (273)
T ss_dssp             HTT--CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSC
T ss_pred             HCC--CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcc
Confidence            999  88888886              79999999999999999999999   8898 79999999999999999998  


Q ss_pred             -------hHHHHHHHhhcCCCc------cccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHH
Q 027136          140 -------KNTFQYLLEVTHGVD------IYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLN  200 (227)
Q Consensus       140 -------~~~~~~Ll~~~~~~~------~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  200 (227)
                             .+++++|++.|++++      ..++..|+||||+|+..|+.+++++|++.+..+.......+.+|.+
T Consensus       199 ~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence                   799999999999986      1489999999999999999999999999977677677666666643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.7e-31  Score=204.22  Aligned_cols=162  Identities=14%  Similarity=0.093  Sum_probs=146.5

Q ss_pred             hhhcccHHHHHHHHh---CCHHHHHHHHHcCCcccc----------cccCCCCccHHHHHHHhcCccccchhHHHHHHHH
Q 027136           11 EYYVRYWPLYRMIEK---NDWRGVEDFVTNHPDALT----------AKTVAPGSSTIFHAIVELLVDVESDEATCLLDKL   77 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~---g~~~~v~~ll~~~~~~~~----------~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~L   77 (227)
                      .+..|.||||+|+..   |+.++++.|++.+.....          .+ +..|.||||+|+..|+.        +++++|
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~--------~~v~~L  109 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDE-FYQGHSALHIAIEKRSL--------QCVKLL  109 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCST-TTTTCCHHHHHHHTTCH--------HHHHHH
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccc-cccCCCHHHHHHHcCCH--------HHHHHH
Confidence            567899999999999   999999999988653210          11 46799999999999999        999999


Q ss_pred             HhcCCccccccCCCC-------------CCcHHHHHHhcCCHHHHHHHHH---cCCCccccCCCCCChHHHHHHH--cCC
Q 027136           78 ASKVDPQTLARQDEH-------------GYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAY--KGH  139 (227)
Q Consensus        78 l~~~~~~~~~~~~~~-------------~~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~--~~~  139 (227)
                      ++.+  ++++..+..             |.||||+|+..|+.+++++|++   .+++ ++.+|..|.||||+|+.  .++
T Consensus       110 l~~g--a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~  186 (256)
T 2etb_A          110 VENG--ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNS  186 (256)
T ss_dssp             HHTT--CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSC
T ss_pred             HHcC--CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCC
Confidence            9999  888888876             9999999999999999999999   8998 79999999999999999  778


Q ss_pred             hH-------HHHHHHhhcCCC-------ccccCCCCccHHHHHHHhCcHHHHHHHHHhCC
Q 027136          140 KN-------TFQYLLEVTHGV-------DIYSGNDGARVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       140 ~~-------~~~~Ll~~~~~~-------~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      .+       ++++|++.|+++       + .++..|+||||+|+..|+.+++++|++++.
T Consensus       187 ~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~-~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          187 PENSALVIHMYDGLLQMGARLCPTVQLEE-ISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCGGG-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHcCCCccccccccc-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            88       999999999998       7 899999999999999999999999998843

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.7e-30  Score=190.52  Aligned_cols=147  Identities=17%  Similarity=0.105  Sum_probs=140.0

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      +..|.||||+|+..|+.        +++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+++ ++.++..
T Consensus        32 d~~g~t~L~~A~~~g~~--------~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~  100 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGME--------NAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFS  100 (192)
T ss_dssp             CTTCCCHHHHHHHHTCG--------GGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTT
T ss_pred             CCCCCCHHHHHHHcCCH--------HHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCC
Confidence            88899999999999999        9999999998  88999999999999999999999999999999999 7999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |.||||+|+..++.+++++|++.|++++ .++..|.||||+|+..|+.+++++|++. +.+.+.+|..|.||+++|+..+
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          101 GKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFG  178 (192)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhC
Confidence            9999999999999999999999999999 9999999999999999999999999977 6667899999999999999843

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=3.3e-30  Score=194.60  Aligned_cols=179  Identities=16%  Similarity=0.161  Sum_probs=159.1

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC-CC
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ-DE   91 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~-~~   91 (227)
                      ..+.++|+.|+..|+.+.++.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.+  .+++.. +.
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~~--~~~~~~~~~   74 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELVEAGY-DVRQP-DKENVTLLHWAAINNRI--------DLVKYYISKG--AIVDQLGGD   74 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCBTT
T ss_pred             cccchHHHHHHHcCChHHHHHHHHcCC-CcCCC-CCCCCCHHHHHHHhCCH--------HHHHHHHHcC--CcchhhcCC
Confidence            457899999999999999999999886 45455 78899999999999999        9999999999  666544 45


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHh
Q 027136           92 HGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAA  171 (227)
Q Consensus        92 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~  171 (227)
                      .|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~  152 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYR  152 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             cCCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHh
Confidence            589999999999999999999999998 68899999999999999999999999999999999 9999999999999977


Q ss_pred             Cc-HHHHHHHHHhCCCCcccccc-ccccHHHHHhhCC
Q 027136          172 NL-YDVALDLLKLHPTIGRDSID-SRRIVLNKLAQKP  206 (227)
Q Consensus       172 ~~-~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~  206 (227)
                      +. .+++++|++. +...+..+. .|.||||+|+..+
T Consensus       153 ~~~~~~~~~L~~~-~~~~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          153 THSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             CCSSTTHHHHHHT-TCCTTCCCTTTCCCHHHHHHHHT
T ss_pred             CChHHHHHHHHhc-CCCcchhhccCCCcHHHHHHHcC
Confidence            76 7888888866 555567776 8999999999844

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.8e-31  Score=202.67  Aligned_cols=161  Identities=12%  Similarity=0.084  Sum_probs=144.5

Q ss_pred             hcccHHHHHHH---HhCCHHHHHHHHHcCCc----------ccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHh
Q 027136           13 YVRYWPLYRMI---EKNDWRGVEDFVTNHPD----------ALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLAS   79 (227)
Q Consensus        13 ~~~~~~L~~a~---~~g~~~~v~~ll~~~~~----------~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~   79 (227)
                      ..|.||||+|+   ..|+.++++.|++.+..          ..... +..|.||||+|+..|+.        +++++|++
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~--------~~v~~Ll~  114 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV-YYRGQTALHIAIERRCK--------HYVELLVE  114 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTCH--------HHHHHHHH
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc-ccCCCCHHHHHHHcCCH--------HHHHHHHh
Confidence            56999999999   77999999999997632          12122 45899999999999999        99999999


Q ss_pred             cCCccccccCC--------------CCCCcHHHHHHhcCCHHHHHHHHH---cCCCccccCCCCCChHHHHHHHcCC---
Q 027136           80 KVDPQTLARQD--------------EHGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGH---  139 (227)
Q Consensus        80 ~~~~~~~~~~~--------------~~~~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~---  139 (227)
                      .+  ++++..+              ..|.||||+|+..|+.+++++|++   .+.+ ++.+|..|+||||+|+..++   
T Consensus       115 ~g--a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~  191 (260)
T 3jxi_A          115 KG--ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTR  191 (260)
T ss_dssp             TT--CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSH
T ss_pred             CC--CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCch
Confidence            99  8888888              589999999999999999999999   8898 79999999999999999887   


Q ss_pred             ------hHHHHHHHhhcCCC-------ccccCCCCccHHHHHHHhCcHHHHHHHHHhCCC
Q 027136          140 ------KNTFQYLLEVTHGV-------DIYSGNDGARVLLLLIAANLYDVALDLLKLHPT  186 (227)
Q Consensus       140 ------~~~~~~Ll~~~~~~-------~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  186 (227)
                            .+++++|++.|+++       + ..+..|+||||+|+..|+.+++++|+++++.
T Consensus       192 ~~~~~~~~~v~~Ll~~ga~~~~~~~~~~-~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          192 ENTKFVTKMYDLLLIKCAKLFPDTNLEA-LLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCCGGG-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcccccccchhh-cccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                  69999999999998       5 7999999999999999999999999998544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=8.3e-30  Score=182.72  Aligned_cols=145  Identities=17%  Similarity=0.189  Sum_probs=137.4

Q ss_pred             CCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCC
Q 027136           49 PGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDT  128 (227)
Q Consensus        49 ~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  128 (227)
                      .|.||||.|+..|+.        +++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.
T Consensus         2 ~~~t~L~~A~~~g~~--------~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~   70 (167)
T 3v31_A            2 ANSLSVHQLAAQGEM--------LYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRE   70 (167)
T ss_dssp             TTCCCHHHHHHTTCH--------HHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred             CCcchHHHHHHCCCH--------HHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCC
Confidence            478999999999999        9999999999  88999999999999999999999999999999998 788999999


Q ss_pred             hHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          129 LPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       129 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.+++++|++. +.+.+.+|..|.||+++|+..+
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A           71 SALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999999999999999 9999999999999999999999999986 6666899999999999999843

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=7.9e-30  Score=181.81  Aligned_cols=145  Identities=21%  Similarity=0.154  Sum_probs=136.8

Q ss_pred             CCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCC
Q 027136           49 PGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDT  128 (227)
Q Consensus        49 ~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  128 (227)
                      ...||||.|+..|+.        +++++|++.+  .+++..+..|.||||+|+. ++.+++++|++.+.+ ++.++..|.
T Consensus         4 ~~~~~L~~A~~~g~~--------~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~   71 (162)
T 1ihb_A            4 PWGNELASAAARGDL--------EQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGF   71 (162)
T ss_dssp             -CHHHHHHHHHHTCH--------HHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred             hHhhHHHHHHHcCCH--------HHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCC
Confidence            457999999999999        9999999999  8899999999999999999 999999999999998 799999999


Q ss_pred             hHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          129 LPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       129 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++.+....+.+|..|.||||+|+.++
T Consensus        72 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~  148 (162)
T 1ihb_A           72 AVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  148 (162)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcC
Confidence            99999999999999999999999999 999999999999999999999999999977767899999999999999843

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=2.9e-29  Score=199.19  Aligned_cols=182  Identities=19%  Similarity=0.170  Sum_probs=144.1

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccc-----
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQT-----   85 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~-----   85 (227)
                      ...+|.|+||.|++.|++++|+.||+.+. .++.+.+..|.||||+|+..|+.        +++++|++.+  ++     
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g~~--------~iv~~Ll~~g--a~~~~~~   89 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSRE--------DIVELLLRHG--ADPVLRK   89 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCC
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCcCHHHHHHHcCCH--------HHHHHHHHcC--Cchhhhc
Confidence            34567899999999999999999999987 45555345699999999999999        9999999987  44     


Q ss_pred             ----------------------------cccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCcccc----------CCCCC
Q 027136           86 ----------------------------LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNI----------RGGLD  127 (227)
Q Consensus        86 ----------------------------~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~g  127 (227)
                                                  ++..+..|.||||+|+..|+.+++++|++++++ ++.          .+..|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~~~g  168 (337)
T 4g8k_A           90 KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGG  168 (337)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCC-----CTTCS
T ss_pred             cCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC-cchhhccccccccccCCC
Confidence                                        445667778888888888888888888888877 443          24457


Q ss_pred             ChHHHHHHHcCChHHHHHHHh-hcCCCccccCCCCccHHHHHHHhCc----HHHHHHHHHhCCCCccccccccccHHHHH
Q 027136          128 TLPIHEAAYKGHKNTFQYLLE-VTHGVDIYSGNDGARVLLLLIAANL----YDVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       128 ~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      .||||+|+..|+.+++++|++ .|++++ ..+..|.|+++.++..+.    .+++++|++. +.+.+.+|..|.||||+|
T Consensus       169 ~T~L~~A~~~g~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a  246 (337)
T 4g8k_A          169 ATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILA  246 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHH
Confidence            888888888888888888885 478888 888888888887665433    3466767755 566678888888888888


Q ss_pred             hhCC
Q 027136          203 AQKP  206 (227)
Q Consensus       203 ~~~~  206 (227)
                      +..+
T Consensus       247 ~~~~  250 (337)
T 4g8k_A          247 VEKK  250 (337)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8855

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=3.2e-30  Score=200.38  Aligned_cols=163  Identities=13%  Similarity=0.043  Sum_probs=149.3

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      +|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  ++++..+..|
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~-d~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--a~~~~~~~~g  128 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGL-DDSQF-DDKGNTALYYAVDSGNM--------QTVKLFVKKN--WRLMFYGKTG  128 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHHC--GGGGGCSSSG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCc-CCCCCcHHHHHHHcCCH--------HHHHHHHhcC--CCCCccCCCC
Confidence            58999999999999999999999986 45455 88999999999999999        9999999999  9999999999


Q ss_pred             -CcHHHHHHhcCCHHHHHHHHHcCCCccccCCC-CCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccH-HHHHHH
Q 027136           94 -YTALFLCAGKGNLRALKVLVKCNPNLTNIRGG-LDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARV-LLLLIA  170 (227)
Q Consensus        94 -~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~a~~  170 (227)
                       .||||+|+..|+.+++++|++++++.   .+. .|.||||+|+..|+.+++++|++.|++++ .++..|+|| ||+|+.
T Consensus       129 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~  204 (285)
T 3kea_A          129 WKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAID  204 (285)
T ss_dssp             GGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCBCCTTHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCCCChHHHHHHH
Confidence             89999999999999999999999873   333 89999999999999999999999999999 999999998 999999


Q ss_pred             hCcHHHHHHHHHhCCCCcccccc
Q 027136          171 ANLYDVALDLLKLHPTIGRDSID  193 (227)
Q Consensus       171 ~~~~~~~~~Ll~~~~~~~~~~~~  193 (227)
                      .++.+++++|++. +++.+.+|.
T Consensus       205 ~~~~~~v~~Ll~~-gad~~~~~~  226 (285)
T 3kea_A          205 NKDIEMLQALFKY-DINIYSANL  226 (285)
T ss_dssp             HTCHHHHHHHTTS-CBCSTTTTG
T ss_pred             cCCHHHHHHHHHc-CCCCCCCCh
Confidence            9999999999977 666667764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=3.5e-29  Score=179.91  Aligned_cols=147  Identities=19%  Similarity=0.149  Sum_probs=137.3

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      ...+.++|+.|+..|+.        +++++|++.+  .+++..+..|.||||+|+..|+.+++++|++++.+ ++..+..
T Consensus        11 ~~~~~~~l~~A~~~g~~--------~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~   79 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRD--------DEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHA   79 (169)
T ss_dssp             --CHHHHHHHHHHHTCH--------HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             CCcccchHHHHHHcCCH--------HHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCC
Confidence            45568999999999999        9999999999  88999999999999999999999999999999998 6899999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|++. +.+.+.+|..|.||+++|+..+
T Consensus        80 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~  157 (169)
T 2y1l_E           80 GMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNG  157 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhC
Confidence            9999999999999999999999999999 9999999999999999999999999987 5666799999999999999843

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.2e-30  Score=197.85  Aligned_cols=179  Identities=13%  Similarity=-0.007  Sum_probs=130.6

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCC
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEH   92 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   92 (227)
                      ..|.||||.|++.|+.+.++.+++.+....  . +..|.||||.|+..|+.        +++++|++.+  ++++..|..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~-~~~~~t~L~~A~~~g~~--------~~v~~Ll~~g--~~~~~~d~~   69 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--F-NPLPLALLLDSSLEGEF--------DLVQRIIYEV--DDPSLPNDE   69 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCH--------HHHHHHTSTT--SSCCCCCTT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc--c-CchhhHHHHHHHHcCCH--------HHHHHHHHcC--CCCCCcCCC
Confidence            468999999999999999999999886332  2 56789999999999999        9999999999  889999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCc-cHHHHH--H
Q 027136           93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGA-RVLLLL--I  169 (227)
Q Consensus        93 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~a--~  169 (227)
                      |.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++.|++++ ..+..|. ||||+|  +
T Consensus        70 g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t~l~~a~~~  147 (239)
T 1ycs_B           70 GITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKCEEM  147 (239)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHCCSS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcchHHHHHHh
Confidence            99999999999999999999999999 79999999999999999999999999999999999 7777776 999999  7


Q ss_pred             HhCcHHHHHHHHHhCCCCcccc---------ccccccHHHHHhhCCC
Q 027136          170 AANLYDVALDLLKLHPTIGRDS---------IDSRRIVLNKLAQKPY  207 (227)
Q Consensus       170 ~~~~~~~~~~Ll~~~~~~~~~~---------~~~g~t~l~~a~~~~~  207 (227)
                      ..|+.+++++|++.+. .....         +..+.++.+++.+.+.
T Consensus       148 ~~g~~~~~~~Ll~~~a-~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          148 EEGYTQCSQFLYGVQE-KMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             STTCCCHHHHHHHHHH-HTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhccHHHHHHHHHhhh-cccccccceEEEEeccCCCCCCcccccCCC
Confidence            8899999999998733 33333         5667888888777664

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=5.2e-32  Score=204.01  Aligned_cols=180  Identities=13%  Similarity=0.029  Sum_probs=157.3

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      +.....+.+|||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  ++++.
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-d~~g~tpLh~A~~~g~~--------~~v~~Ll~~g--a~~n~   82 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQP-NEEGITALHNAICGANY--------SIVDFLITAG--ANVNS   82 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTC
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHCC--CCCCC
Confidence            3445678899999999999999999999886 45556 88999999999999999        9999999999  89999


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC-CCCChHHHHH--HHcCChHHHHHHHhhcCCCccccCCCCccHH
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG-GLDTLPIHEA--AYKGHKNTFQYLLEVTHGVDIYSGNDGARVL  165 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  165 (227)
                      +|..|.||||+|+..|+.+++++|++.+++ ++..+ ..|.||||+|  +..++.+++++|++.|++++ ..+..|.||+
T Consensus        83 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~~l  160 (229)
T 2vge_A           83 PDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG-LMNSGAVYAL  160 (229)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT-TSGGGEEEES
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc-cccCCchHHH
Confidence            999999999999999999999999999999 57765 6999999999  99999999999999999999 8899999999


Q ss_pred             HHHHHhCcHHHHHHHHHhCCCC--ccccccccccHHHHHhhCC
Q 027136          166 LLLIAANLYDVALDLLKLHPTI--GRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       166 ~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~a~~~~  206 (227)
                      +.+.....   .+.|++. +..  ...+|..|.||||+|+.++
T Consensus       161 ~~~~~~~~---~~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          161 WDYSAEFG---DELSFRE-GESVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             SCBCCSST---TBCCBCT-TCEEEEEESSCTTCSSEEEEEETT
T ss_pred             HHHhhccc---cccCccc-cccccccccCCCcccHHHHHHHcC
Confidence            86555442   2455655 444  5678899999999999866

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=4.2e-29  Score=176.60  Aligned_cols=142  Identities=19%  Similarity=0.165  Sum_probs=132.7

Q ss_pred             ccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChH
Q 027136           51 SSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLP  130 (227)
Q Consensus        51 ~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  130 (227)
                      .++|+.|+..|+.        +++++|++.+  .+++ .+..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||
T Consensus         3 ~~~L~~A~~~g~~--------~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~   70 (153)
T 1awc_B            3 GKKLLEAARAGQD--------DEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTP   70 (153)
T ss_dssp             HHHHHHHHHHTCH--------HHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCH
T ss_pred             cHHHHHHHHcCCH--------HHHHHHHHcC--CCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            5899999999999        9999999999  5554 578899999999999999999999999998 78999999999


Q ss_pred             HHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          131 IHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       131 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ||+|+..|+.+++++|++.|++++ .++..|+||||+|+..++.+++++|++. +.+.+.+|..|.||+++|+..+
T Consensus        71 L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B           71 LHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcC
Confidence            999999999999999999999999 9999999999999999999999999987 6667799999999999999854

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=6.1e-29  Score=179.01  Aligned_cols=145  Identities=17%  Similarity=0.170  Sum_probs=134.3

Q ss_pred             CccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCCh
Q 027136           50 GSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTL  129 (227)
Q Consensus        50 g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  129 (227)
                      +.+|||.|+..|+.        +++++|++.+ +..++..+..|.||||+|+..|+.+++++|++++++ ++..+..|.|
T Consensus         2 ~~~~L~~A~~~g~~--------~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t   71 (172)
T 3v30_A            2 DSLSIHQLAAQGEL--------DQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERES   71 (172)
T ss_dssp             --CCHHHHHHTTCH--------HHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCC
T ss_pred             chhhHHHHHHcCCH--------HHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCC
Confidence            46899999999999        9999999998 334788899999999999999999999999999999 7999999999


Q ss_pred             HHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          130 PIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       130 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |||+|+..++.+++++|++.|++++ ..+..|+||||+|+..++.+++++|++. +.+.+.+|..|.||||+|+..+
T Consensus        72 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~  146 (172)
T 3v30_A           72 ALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALG  146 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhC
Confidence            9999999999999999999999999 9999999999999999999999999987 5667899999999999999843

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=8.2e-29  Score=175.52  Aligned_cols=143  Identities=20%  Similarity=0.127  Sum_probs=134.1

Q ss_pred             CccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCCh
Q 027136           50 GSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTL  129 (227)
Q Consensus        50 g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  129 (227)
                      +.||||.|+..|+.        +++++|++. .+.+++..+..|.||||+ +..|+.+++++|++.+.+ ++.++..|.|
T Consensus         2 ~~~~L~~A~~~g~~--------~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t   70 (156)
T 1bd8_A            2 AGDRLSGAAARGDV--------QEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTS   70 (156)
T ss_dssp             HHHHHHHHHHHTCH--------HHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             cchHHHHHHHhCCH--------HHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            46899999999999        999999998 347888999999999999 999999999999999999 7999999999


Q ss_pred             HHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          130 PIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       130 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++.  .+.+.+|..|.||||+|+..+
T Consensus        71 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~  144 (156)
T 1bd8_A           71 PVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSC
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999 9999999999999999999999999977  666799999999999999843

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=5.2e-29  Score=178.20  Aligned_cols=146  Identities=15%  Similarity=0.122  Sum_probs=135.6

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      +..|.+|||.|+..|+.        +++++|++.+ +.+++..+..|.||||+|+..++.+++++|++++.+ ++.++..
T Consensus         5 ~~~~~~~l~~A~~~g~~--------~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~   74 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDV--------ETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKG   74 (165)
T ss_dssp             -CHHHHHHHHHHHHTCH--------HHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             cchhhHHHHHHHHhCCH--------HHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCC
Confidence            56788999999999999        9999999976 367778888899999999999999999999999999 7999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      |.||||+|+..++.+++++|++.|++++ ..+..|+||||+|+..++.+++++|++. +.+.+.+|..|.||+++|..
T Consensus        75 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           75 GLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc
Confidence            9999999999999999999999999999 9999999999999999999999999977 66678999999999999765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.5e-28  Score=178.16  Aligned_cols=145  Identities=19%  Similarity=0.215  Sum_probs=133.7

Q ss_pred             CCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCC
Q 027136           48 APGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLD  127 (227)
Q Consensus        48 ~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  127 (227)
                      ..+.++||.|+..|+.        +++++|++.+ +.+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|
T Consensus         3 ~~~~~~l~~A~~~g~~--------~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g   72 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNA--------VAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGD   72 (179)
T ss_dssp             ----CCHHHHHHHTCH--------HHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             HHHHHHHHHHHHcCCH--------HHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCC
Confidence            3567899999999999        9999999986 367889999999999999999999999999999999 79999999


Q ss_pred             ChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          128 TLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       128 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      .||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|++. +.+.+.+|..|.||+++|+.
T Consensus        73 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~  147 (179)
T 3f6q_A           73 DTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKA  147 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHH
Confidence            999999999999999999999999999 9999999999999999999999999977 66678999999999999976

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=6.1e-29  Score=176.40  Aligned_cols=146  Identities=18%  Similarity=0.118  Sum_probs=118.9

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      +..|.||||+|+..|+.        +++++|++.+  .+++..+..|.||||+|+ .++.+++++|++++.+ ++.++..
T Consensus         9 ~~~~~t~L~~A~~~g~~--------~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~   76 (156)
T 1bi7_B            9 MEPSADWLATAAARGRV--------EEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPA   76 (156)
T ss_dssp             -CCSTTHHHHHHHHTCH--------HHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTT
T ss_pred             CccchHHHHHHHHcCCH--------HHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCC
Confidence            67789999999999999        9999999999  889999999999999985 8999999999999999 7999999


Q ss_pred             CCh-HHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          127 DTL-PIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       127 g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      |.| |||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++. +.+.+.++..|.||.+.+...
T Consensus        77 g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~~~i  154 (156)
T 1bi7_B           77 TLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGPSDI  154 (156)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSC-C--------------------
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccCCCC
Confidence            999 9999999999999999999999999 9999999999999999999999999966 667789999999998866544


Q ss_pred             C
Q 027136          206 P  206 (227)
Q Consensus       206 ~  206 (227)
                      |
T Consensus       155 p  155 (156)
T 1bi7_B          155 P  155 (156)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=6.3e-28  Score=188.24  Aligned_cols=173  Identities=17%  Similarity=0.103  Sum_probs=149.3

Q ss_pred             HHHHhCCHHHHHHHHHcCCccc-------ccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           21 RMIEKNDWRGVEDFVTNHPDAL-------TAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        21 ~a~~~g~~~~v~~ll~~~~~~~-------~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      .+++.+..+.++.++.......       ....+..|.||||.|+..|+.        +++++|++.+  .+++..+..|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~--------~~v~~Ll~~g--~~~~~~~~~g   73 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDT--------EEVLRLLERG--ADINYANVDG   73 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCH--------HHHHHHHHHC--CCTTCBCTTC
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCH--------HHHHHHHHcC--CCCcccCCCC
Confidence            4677788888888887653211       111234578999999999999        9999999999  8899999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCcccc----------------
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYS----------------  157 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~----------------  157 (227)
                      .||||+|+..|+.+++++|++++++ ++..+..|.||||+|+..|+.+++++|++.|++++ ..                
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~  151 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAM  151 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHhcch
Confidence            9999999999999999999999999 79999999999999999999999999999998865 33                


Q ss_pred             --------------------------------------------CCCCccHHHHHHHhCcHHHHHHHHHhCCCCcccccc
Q 027136          158 --------------------------------------------GNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSID  193 (227)
Q Consensus       158 --------------------------------------------~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  193 (227)
                                                                  +..|.||||+|+..|+.+++++|++. +.+.+.+|.
T Consensus       152 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~  230 (299)
T 1s70_B          152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDY  230 (299)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCT
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCC
Confidence                                                        24578999999999999999999976 666789999


Q ss_pred             ccccHHHHHhhCC
Q 027136          194 SRRIVLNKLAQKP  206 (227)
Q Consensus       194 ~g~t~l~~a~~~~  206 (227)
                      .|.||||+|+..+
T Consensus       231 ~g~tpL~~A~~~~  243 (299)
T 1s70_B          231 DGWTPLHAAAHWG  243 (299)
T ss_dssp             TCCCHHHHHHHTT
T ss_pred             CCCcHHHHHHhcC
Confidence            9999999999855

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=2.5e-29  Score=183.37  Aligned_cols=160  Identities=8%  Similarity=-0.008  Sum_probs=140.6

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCC
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEH   92 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~   92 (227)
                      .+++++|+.|++.|+.+.++.++..+...   ..+..|.||||+|+..++.    +.+.+++++|++.|  ++++.++..
T Consensus         4 ~~~~~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~~~~~~----~~~~~iv~~Ll~~G--advn~~d~~   74 (186)
T 3t8k_A            4 MSEYRTVSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNND----EARYKISMFLINKG--ADIKSRTKE   74 (186)
T ss_dssp             HHHCSSHHHHHHHSCHHHHHHHHHHSSSC---HHHHHTTTHHHHHTTCSCH----HHHHHHHHHHHHTT--CCSSCCCTT
T ss_pred             cccccHHHHHHHcCCHHHHHHHHhcCccc---ccccCCCCHHHHHHHcCCc----chHHHHHHHHHHCC--CCCCCCCCC
Confidence            45789999999999999999999877533   2126799999999999975    11226999999999  999999999


Q ss_pred             CCcHHHHHHhcCC------HHHHHHHHHcCCCccccCCCCCC-hHHHHHHHcCC-----hHHHHHHHh-hcCCCccccCC
Q 027136           93 GYTALFLCAGKGN------LRALKVLVKCNPNLTNIRGGLDT-LPIHEAAYKGH-----KNTFQYLLE-VTHGVDIYSGN  159 (227)
Q Consensus        93 ~~t~L~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~~Ll~-~~~~~~~~~~~  159 (227)
                      |.||||+|+..++      .+++++|+++|++ ++.+|..|. ||||+|+..+.     .+++++|++ .|++++ .++.
T Consensus        75 g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d~  152 (186)
T 3t8k_A           75 GTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDK  152 (186)
T ss_dssp             CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCCT
T ss_pred             CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccCC
Confidence            9999999999886      6889999999999 799999999 99999999543     569999999 999999 9999


Q ss_pred             CCccHHHHHHHhCcHHHHHHHHHh
Q 027136          160 DGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       160 ~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                      .|+||||+|+..++.+++++|++.
T Consensus       153 ~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          153 WGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             TSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999865

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.9e-28  Score=168.32  Aligned_cols=130  Identities=16%  Similarity=0.102  Sum_probs=122.8

Q ss_pred             ccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCcc
Q 027136           41 ALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLT  120 (227)
Q Consensus        41 ~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~  120 (227)
                      .++.. +..|.||||+|+..|+.        +++++|++.+  .+++.++..|.||||+|+. ++.+++++|++++++ +
T Consensus         4 ~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~   70 (136)
T 1d9s_A            4 GIHML-GGSSDAGLATAAARGQV--------ETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-P   70 (136)
T ss_dssp             CCSCC-CCCCSCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-S
T ss_pred             CccCC-CCCCccHHHHHHHcCCH--------HHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-C
Confidence            34445 78899999999999999        9999999999  8899999999999999999 999999999999999 7


Q ss_pred             ccCCCC-CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhC
Q 027136          121 NIRGGL-DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH  184 (227)
Q Consensus       121 ~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~  184 (227)
                      +.++.. |.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+..++.+++++|++.+
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999 9999999999999999999999999999 99999999999999999999999999874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.8e-26  Score=157.28  Aligned_cols=125  Identities=24%  Similarity=0.319  Sum_probs=119.7

Q ss_pred             CCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCC
Q 027136           49 PGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDT  128 (227)
Q Consensus        49 ~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  128 (227)
                      +|.||||+|+..|+.        +++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.
T Consensus         1 ~g~t~L~~A~~~~~~--------~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~   69 (126)
T 1n0r_A            1 NGRTPLHLAARNGHL--------EVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGR   69 (126)
T ss_dssp             CCCCHHHHHHHHTCH--------HHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred             CCccHHHHHHHcCcH--------HHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCC
Confidence            589999999999999        9999999999  88899999999999999999999999999999998 789999999


Q ss_pred             hHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCC
Q 027136          129 LPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       129 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      ||||+|+..++.+++++|++.|++++ .++..|.|||++|+..++.+++++|++.+.
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           70 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            99999999999999999999999999 999999999999999999999999998753

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.1e-27  Score=169.98  Aligned_cols=144  Identities=17%  Similarity=0.090  Sum_probs=116.6

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      .....|.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+ .|+.        +++++|++.+  ++++.+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~-~~~~--------~~v~~Ll~~g--~~~~~~   73 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGA-NPNAP-NSYGRRPIQVMM-MGSA--------RVAELLLLHG--AEPNCA   73 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTC-CTTCC-CSSSCCTTTSSC-TTCH--------HHHHHHHTTT--CCCCCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCC-CCCCC-CCCCCCHHHHHH-cCCH--------HHHHHHHHcC--CCCCCc
Confidence            345668999999999999999999999876 45556 889999999985 8999        9999999999  899999


Q ss_pred             CCCCCc-HHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           90 DEHGYT-ALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        90 ~~~~~t-~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                      +..|.| |||+|+..|+.+++++|++++++ ++.++..|.||||+|+..|+.+++++|++.|++++ .++..|.||.+-+
T Consensus        74 d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~~~~~  151 (156)
T 1bi7_B           74 DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-GSNHARIDAAEGP  151 (156)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             CCCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC-ccCcCcCcccccC
Confidence            999999 99999999999999999999999 79999999999999999999999999999999999 9999999997743

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=6.4e-27  Score=162.19  Aligned_cols=125  Identities=24%  Similarity=0.263  Sum_probs=119.2

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      ...+.||||+|+..|+.        +++++|++.+  .+++..|..|.||||+|+..++.+++++|++++++ ++.+|..
T Consensus        11 ~~~~~t~l~~A~~~g~~--------~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~   79 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQD--------DEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAI   79 (136)
T ss_dssp             -CHHHHHHHHHHHHTCH--------HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             cccccHHHHHHHHhCCH--------HHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence            55678999999999999        9999999999  88999999999999999999999999999999999 7999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHh
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                      |.||||+|+..++.+++++|++.|++++ .++..|.||||+|+..++.+++++|++.
T Consensus        80 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           80 GFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999999999999999999999999999 9999999999999999999999999965

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=6e-28  Score=181.78  Aligned_cols=160  Identities=14%  Similarity=0.079  Sum_probs=136.1

Q ss_pred             HHHHHcCCccc-ccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHH
Q 027136           32 EDFVTNHPDAL-TAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALK  110 (227)
Q Consensus        32 ~~ll~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~  110 (227)
                      +.+++++.... ....+.+|.||||+|+..|+.        +++++|++.+  ++++..|..|.||||+|+..|+.++++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~--------~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~   71 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGEL--------EVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVD   71 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCH--------HHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCH--------HHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            45666654221 122256778999999999999        9999999999  889999999999999999999999999


Q ss_pred             HHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccC-CCCccHHHHH--HHhCcHHHHHHHHHhCCCC
Q 027136          111 VLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSG-NDGARVLLLL--IAANLYDVALDLLKLHPTI  187 (227)
Q Consensus       111 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~a--~~~~~~~~~~~Ll~~~~~~  187 (227)
                      +|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|++++ ..+ ..|+||||+|  +..++.+++++|++. +.+
T Consensus        72 ~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~  148 (229)
T 2vge_A           72 FLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF-ATTLSDGATAFEKCDPYREGYADCATYLADV-EQS  148 (229)
T ss_dssp             HHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHH
T ss_pred             HHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCC
Confidence            99999999 79999999999999999999999999999999999 665 6999999999  999999999999988 556


Q ss_pred             ccccccccccHHHHHhh
Q 027136          188 GRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       188 ~~~~~~~g~t~l~~a~~  204 (227)
                      .+.+|..|.||++.++.
T Consensus       149 ~~~~~~~~~~~l~~~~~  165 (229)
T 2vge_A          149 MGLMNSGAVYALWDYSA  165 (229)
T ss_dssp             TTTSGGGEEEESSCBCC
T ss_pred             cccccCCchHHHHHHhh
Confidence            67889999999986544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=3.8e-27  Score=163.31  Aligned_cols=132  Identities=16%  Similarity=0.067  Sum_probs=122.0

Q ss_pred             cCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136            7 QGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus         7 ~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      ..+..+..|.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+. ++.        +++++|++.+  +++
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~-~~~--------~~v~~Ll~~g--~~~   70 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-DPNAL-NRFGRRPIQVMMM-GSA--------QVAELLLLHG--AEP   70 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTCCTTTTTSTT-SCH--------HHHHHHHHHT--CCS
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC-CcCCc-CCCCCCHHHHHHc-CCH--------HHHHHHHHCC--CCC
Confidence            345566789999999999999999999999976 45556 8899999999999 999        9999999999  889


Q ss_pred             ccCCCC-CCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q 027136           87 ARQDEH-GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG  152 (227)
Q Consensus        87 ~~~~~~-~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  152 (227)
                      +.++.. |.||||+|+..++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|++.|++
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999 99999999999999999999999999 799999999999999999999999999999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=6.6e-27  Score=177.19  Aligned_cols=142  Identities=13%  Similarity=0.066  Sum_probs=100.5

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      ...|.||||.|+..++.        ++++.|++.+  .+++.. ..+.||||.|+..|+.+++++|++.+++ ++.+|..
T Consensus         2 ~~~g~t~L~~a~~~~~~--------~~~~~ll~~g--~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~   69 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLR--------KTGSERIAHG--MRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDE   69 (239)
T ss_dssp             ----------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTT
T ss_pred             CccccccCchhhhhhhH--------HHHHHHhccC--CCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence            45689999999999999        9999999999  777654 5789999999999999999999999998 7999999


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccc-cHHHHH
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRR-IVLNKL  202 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a  202 (227)
                      |.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++. +.+.+.++..|. ||+|+|
T Consensus        70 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           70 GITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHH
Confidence            9999999999999999999999999999 9999999999999999999999999987 555567777666 999998

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.94  E-value=2.5e-27  Score=187.50  Aligned_cols=168  Identities=11%  Similarity=0.051  Sum_probs=131.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHH
Q 027136           18 PLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTAL   97 (227)
Q Consensus        18 ~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L   97 (227)
                      .+|.|+..+..++++.+++.+. .++...+..|.||||+|+..|+.        +++++|++.+  ++++.++..|.|||
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~-dvn~~~d~~g~TpLh~Aa~~g~~--------~~v~~Ll~~G--ad~n~~d~~g~TpL  168 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQL-NLNIPVDEHGNTPLHWLTSIANL--------ELVKHLVKHG--SNRLYGDNMGESCL  168 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCC-CSCSCCSTTCCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTBCCTTCCCHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCC-CcccccCCCCCcHHHHHHHcCCH--------HHHHHHHHcC--CCCCCcCCCCCCHH
Confidence            3577777777777777776665 55552388999999999999999        9999999999  99999999999999


Q ss_pred             HHHHhcCC---HHHHHHHHHcCCCccccCCCCCChHHHHHHH----cCChHHHHHHHhh--------------------c
Q 027136           98 FLCAGKGN---LRALKVLVKCNPNLTNIRGGLDTLPIHEAAY----KGHKNTFQYLLEV--------------------T  150 (227)
Q Consensus        98 ~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~--------------------~  150 (227)
                      |+|+..|+   .++++.|++.+...++.++..|.||||+|+.    .|+.+++++|++.                    |
T Consensus       169 h~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g  248 (327)
T 1sw6_A          169 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE  248 (327)
T ss_dssp             HHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----
T ss_pred             HHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhccc
Confidence            99999998   6778888887633378899999999999999    8999999999987                    7


Q ss_pred             CCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          151 HGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       151 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ++++ .++..|.||||.|+.      +++|++.   ..+.+|..|+||||+|+.++
T Consensus       249 ~~~~-~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g  294 (327)
T 1sw6_A          249 SKPN-DKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLG  294 (327)
T ss_dssp             ------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHC
T ss_pred             CCcc-cccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcC
Confidence            7888 899999999999985      8889877   46788999999999999844

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=8.3e-26  Score=156.53  Aligned_cols=127  Identities=17%  Similarity=0.161  Sum_probs=116.7

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD   90 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~   90 (227)
                      ....+.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..++.        +++++|++.+  ++++..|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--~~~~~~d   77 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGA-DVNAK-DEYGLTPLYLATAHGHL--------EIVEVLLKNG--ADVNAVD   77 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--CCTTCCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCC-CCCCc-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCcCC
Confidence            34668899999999999999999999976 45455 88899999999999999        9999999999  8899999


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhc
Q 027136           91 EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVT  150 (227)
Q Consensus        91 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  150 (227)
                      ..|.||||+|+..++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|++.|
T Consensus        78 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           78 AIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999 7899999999999999999999999999865

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.6e-25  Score=152.56  Aligned_cols=126  Identities=22%  Similarity=0.262  Sum_probs=117.8

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      +|.||||.|+..|+.++++.|++.+. .++.. +..|.||||+|+..++.        +++++|++.+  .+++.++..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~-~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g--~~~~~~~~~g   68 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-DVNAK-DKNGRTPLHLAARNGHL--------EVVKLLLEAG--ADVNAKDKNG   68 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC-CTTCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--CCTTCCCTTS
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC-CCCCc-CCCCCcHHHHHHHcCcH--------HHHHHHHHcC--CCCcccCCCC
Confidence            48899999999999999999999876 44455 78899999999999999        9999999999  8899999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCC
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG  152 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  152 (227)
                      .||||+|+..++.+++++|++++++ ++.++..|.|||++|+..++.+++++|++.|++
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           69 RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999 789999999999999999999999999999874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=9.6e-27  Score=169.66  Aligned_cols=143  Identities=10%  Similarity=-0.088  Sum_probs=125.9

Q ss_pred             CccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC-CCCCcHHHHHHhcCCH----HHHHHHHHcCCCccccCC
Q 027136           50 GSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD-EHGYTALFLCAGKGNL----RALKVLVKCNPNLTNIRG  124 (227)
Q Consensus        50 g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~t~L~~a~~~~~~----~~~~~Ll~~~~~~~~~~~  124 (227)
                      +.++|+.|++.|+.        +.++.+++.+    ++..+ ..|.||||+|+..++.    +++++|+++|++ ++.++
T Consensus         6 ~~~~l~~Aa~~g~~--------~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d   72 (186)
T 3t8k_A            6 EYRTVSAAAMLGTY--------EDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRT   72 (186)
T ss_dssp             HCSSHHHHHHHSCH--------HHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCC
T ss_pred             cccHHHHHHHcCCH--------HHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCC
Confidence            35789999999999        9999888877    34444 6799999999999975    599999999999 79999


Q ss_pred             CCCChHHHHHHHcCC------hHHHHHHHhhcCCCccccCCCCc-cHHHHHHHh-----CcHHHHHHHHHhCCCCccccc
Q 027136          125 GLDTLPIHEAAYKGH------KNTFQYLLEVTHGVDIYSGNDGA-RVLLLLIAA-----NLYDVALDLLKLHPTIGRDSI  192 (227)
Q Consensus       125 ~~g~t~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~a~~~-----~~~~~~~~Ll~~~~~~~~~~~  192 (227)
                      ..|+||||+|+..++      .+++++|++.|++++ .++..|+ ||||+|+..     +..+++++|++..+.+.+.+|
T Consensus        73 ~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d  151 (186)
T 3t8k_A           73 KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD  151 (186)
T ss_dssp             TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred             CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence            999999999999987      578999999999999 9999999 999999984     346789999984578889999


Q ss_pred             cccccHHHHHhhCC
Q 027136          193 DSRRIVLNKLAQKP  206 (227)
Q Consensus       193 ~~g~t~l~~a~~~~  206 (227)
                      ..|.||||+|++.+
T Consensus       152 ~~G~TpL~~A~~~~  165 (186)
T 3t8k_A          152 KWGLTALEFVKRCQ  165 (186)
T ss_dssp             TTSCCHHHHHHTTT
T ss_pred             CCCCCHHHHHHHcC
Confidence            99999999999854

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=3.9e-26  Score=158.35  Aligned_cols=125  Identities=19%  Similarity=0.208  Sum_probs=108.0

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      +..|.||||+|+..|+.        +++++|++.+  .+++.++..|.||||+|+..++.+++++|++++.+ ++.++..
T Consensus         7 ~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~   75 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDI--------PSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQ   75 (137)
T ss_dssp             CTTCCCHHHHHHHHTCH--------HHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGG
T ss_pred             CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCC
Confidence            77889999999999999        9999999988  78888888899999999999999999999999888 6888888


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHh
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                      |.||||+|+..++.+++++|++.|++++ .++..|.|||++|+..+..+++++|.+.
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           76 NDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            9999999999999999999999999888 8888999999999888877777766543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=6e-25  Score=159.80  Aligned_cols=141  Identities=15%  Similarity=0.060  Sum_probs=125.3

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD   90 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~   90 (227)
                      .+..|.||||.|+..|+.+.++.|++ +. .++.+ +..|.||||+|+..|+.        +++++|++.+  ++++.++
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~-d~~g~t~L~~A~~~~~~--------~~v~~Ll~~g--a~~~~~~  106 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DR-DVDAV-DENGRTALLFVAGLGSD--------KCVRLLAEAG--ADLDHRD  106 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TS-CTTCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--CCTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cC-CCCCc-CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCcCC
Confidence            35678999999999999999999998 44 55566 88999999999999999        9999999999  8898888


Q ss_pred             -CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHH
Q 027136           91 -EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        91 -~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  169 (227)
                       ..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..++                  ...+.++|++|+
T Consensus       107 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~  167 (183)
T 3deo_A          107 MRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK------------------TTPKGNPMQFGR  167 (183)
T ss_dssp             SSSSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHH
T ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHH
Confidence             8899999999999999999999999999 79999999999999986432                  234689999999


Q ss_pred             HhCcHHHHHHHHHh
Q 027136          170 AANLYDVALDLLKL  183 (227)
Q Consensus       170 ~~~~~~~~~~Ll~~  183 (227)
                      ..|..+++++|.++
T Consensus       168 ~~~~~~i~~~L~~~  181 (183)
T 3deo_A          168 RIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HcCHHHHHHHHHHh
Confidence            99999999998754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=4.4e-25  Score=172.55  Aligned_cols=139  Identities=12%  Similarity=0.056  Sum_probs=122.2

Q ss_pred             CccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc------CCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCcc
Q 027136           50 GSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR------QDEHGYTALFLCAGK---GNLRALKVLVKCNPNLT  120 (227)
Q Consensus        50 g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~------~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~  120 (227)
                      +.++|+.|+..|+.        +.++.|++.+  .+++.      .+..|.||||+|+..   ++.+++++|++++++ +
T Consensus       151 ~~~~L~~A~~~g~~--------~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-v  219 (301)
T 2b0o_E          151 EPQRLWTAICNRDL--------LSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-L  219 (301)
T ss_dssp             CHHHHHHHHHTTCH--------HHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-T
T ss_pred             hHHHHhhhhhccCH--------HHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-C
Confidence            34679999999999        9999999999  77776      588999999999987   899999999999999 7


Q ss_pred             ccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHH
Q 027136          121 NIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLN  200 (227)
Q Consensus       121 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  200 (227)
                      +.+|..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+..++.+++++|++.+..       .|.||||
T Consensus       220 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh  291 (301)
T 2b0o_E          220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLH  291 (301)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhH
Confidence            9999999999999999999999999999999999 9999999999999999999999999987332       5899999


Q ss_pred             HHhhCCC
Q 027136          201 KLAQKPY  207 (227)
Q Consensus       201 ~a~~~~~  207 (227)
                      +|+..+.
T Consensus       292 ~A~~~g~  298 (301)
T 2b0o_E          292 VDYSWVI  298 (301)
T ss_dssp             -------
T ss_pred             HHHhcCC
Confidence            9998654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=6.6e-25  Score=166.69  Aligned_cols=142  Identities=15%  Similarity=0.079  Sum_probs=127.7

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      +.+..|.||||.|++.|+.++++.|++ +. .++.+ +..|.||||+|+..|+.        +++++|++.+  ++++.+
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~-d~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--a~~~~~  106 (244)
T 3ui2_A           40 DVVSEYETPWWTAARKADEQALSQLLE-DR-DVDAV-DENGRTALLFVAGLGSD--------KCVRLLAEAG--ADLDHR  106 (244)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHTTT-TC-CTTCB-CTTSCBHHHHHHHHTCH--------HHHHHHHHTT--CCTTCC
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHc-CC-CCCCc-CCCCCCHHHHHHHCCCH--------HHHHHHHHcC--CCCCcC
Confidence            445679999999999999999999998 44 56566 88999999999999999        9999999999  889888


Q ss_pred             C-CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           90 D-EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        90 ~-~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                      + ..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..                  .....+.|||++|
T Consensus       107 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~------------------~~~~~~~~~l~~a  167 (244)
T 3ui2_A          107 DMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREI------------------LKTTPKGNPMQFG  167 (244)
T ss_dssp             CSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH------------------HTTCCCSSHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHH------------------HhccCCCCHHHHH
Confidence            8 7899999999999999999999999999 799999999999999852                  2235589999999


Q ss_pred             HHhCcHHHHHHHHHh
Q 027136          169 IAANLYDVALDLLKL  183 (227)
Q Consensus       169 ~~~~~~~~~~~Ll~~  183 (227)
                      +..|+.+++++|++.
T Consensus       168 ~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          168 RRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHcChHHHHHHHHHh
Confidence            999999999999975

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=3.2e-25  Score=150.93  Aligned_cols=113  Identities=19%  Similarity=0.200  Sum_probs=88.3

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      +..|.||||+|+..|+.        +++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+++ ++.+|..
T Consensus         4 ~~~~~~~l~~A~~~~~~--------~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~   72 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDL--------DEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKH   72 (123)
T ss_dssp             ---CHHHHHHHHHTTCH--------HHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTT
T ss_pred             ccccchHHHHHHHcCCH--------HHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence            45667888888888888        8888888877  67777777888888888888888888888888877 6777888


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHh
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAA  171 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~  171 (227)
                      |.||||+|+..++.+++++|++.|++++ .++..|.||||+|...
T Consensus        73 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           73 HITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCH
Confidence            8888888888888888888888888877 7788888888877443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=2e-25  Score=167.05  Aligned_cols=136  Identities=17%  Similarity=0.132  Sum_probs=115.1

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCccccCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKC-NPNLTNIRGG  125 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~  125 (227)
                      +..|.||||+|+..|+.        +++++|++.+  .+++.++..|.||||+|+..|+.+++++|++. +.+ ++.+|.
T Consensus        70 ~~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~  138 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNL--------SWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNK  138 (222)
T ss_dssp             EEEESCHHHHHHHHTCH--------HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCT
T ss_pred             ccccccccccccccCcH--------HHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCC
Confidence            45678999999999999        9999999999  88999999999999999999999999999999 888 799999


Q ss_pred             CCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCcccccccc
Q 027136          126 LDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSR  195 (227)
Q Consensus       126 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  195 (227)
                      .|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+..+..++++.|+.. +.....++..+
T Consensus       139 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~  206 (222)
T 3ehr_A          139 LGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAED  206 (222)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhh
Confidence            99999999999999999999999999999 9999999999999999999999999976 44444555443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=2e-24  Score=149.70  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=108.5

Q ss_pred             cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCcc
Q 027136           84 QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGAR  163 (227)
Q Consensus        84 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  163 (227)
                      .++ .++..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.|++++ .++..|+|
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t   78 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDS   78 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCC
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCC
Confidence            344 6788999999999999999999999999998 79999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          164 VLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       164 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      |||+|+..++.+++++|++. +.+.+.+|..|.||+++|+.
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhh
Confidence            99999999999999999977 66678999999999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=170.25  Aligned_cols=139  Identities=21%  Similarity=0.132  Sum_probs=120.4

Q ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCcccccc-----cCCCCccHHHHHHHh---cCccccchhHHHHHHHHHhcCCccccc
Q 027136           16 YWPLYRMIEKNDWRGVEDFVTNHPDALTAK-----TVAPGSSTIFHAIVE---LLVDVESDEATCLLDKLASKVDPQTLA   87 (227)
Q Consensus        16 ~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~t~L~~a~~~---~~~~~~~~~~~~~~~~Ll~~~~~~~~~   87 (227)
                      .++|+.|+..|+.+.++.++..+.+ ++..     .+..|.||||+|+..   ++.        +++++|++.+  ++++
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~--------~iv~~Ll~~g--advn  220 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASL--------PLVDFIIQNG--GHLD  220 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTH--------HHHHHHHHHS--SCTT
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcH--------HHHHHHHhcC--CCCC
Confidence            4679999999999999999988764 3331     277899999999998   788        9999999999  8999


Q ss_pred             cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHH
Q 027136           88 RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLL  167 (227)
Q Consensus        88 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  167 (227)
                      .+|..|.||||+|+..|+.+++++|++++++ ++.+|..|.|||++|+..++.+++++|++.|++       .|.||||+
T Consensus       221 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~  292 (301)
T 2b0o_E          221 AKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHV  292 (301)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHH
Confidence            9999999999999999999999999999999 799999999999999999999999999998876       37899999


Q ss_pred             HHHhCc
Q 027136          168 LIAANL  173 (227)
Q Consensus       168 a~~~~~  173 (227)
                      |+..|+
T Consensus       293 A~~~g~  298 (301)
T 2b0o_E          293 DYSWVI  298 (301)
T ss_dssp             ------
T ss_pred             HHhcCC
Confidence            998876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=2.5e-24  Score=156.54  Aligned_cols=127  Identities=18%  Similarity=0.168  Sum_probs=115.4

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC-C
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG-G  125 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~  125 (227)
                      +..|.||||+|+..|+.        +++++|++ +  .+++.+|..|.||||+|+..|+.+++++|++++++ ++.++ .
T Consensus        41 ~~~g~t~L~~A~~~g~~--------~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~  108 (183)
T 3deo_A           41 VSEYETPWWTAARKADE--------QALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMR  108 (183)
T ss_dssp             HHHHHHHHHHHHHTTCH--------HHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSS
T ss_pred             CCCCCCHHHHHHHcCCH--------HHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence            45688999999999999        99999999 7  88999999999999999999999999999999999 67777 8


Q ss_pred             CCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          126 LDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       126 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      .|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..++.                  ..+.+++++|++
T Consensus       109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~  168 (183)
T 3deo_A          109 GGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT------------------TPKGNPMQFGRR  168 (183)
T ss_dssp             SSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHH
T ss_pred             CCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC------------------cccccHHHHHHH
Confidence            89999999999999999999999999999 9999999999999875422                  346788998887

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=8.9e-27  Score=186.90  Aligned_cols=168  Identities=15%  Similarity=0.049  Sum_probs=126.5

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCccc-ccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccc---cccC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDAL-TAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQT---LARQ   89 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~---~~~~   89 (227)
                      ++.||||.|++.|+.++++.|++.+.... ....+..|.||||+|+..|+.        +++++|++.+  ++   .+..
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~--------eiv~~Ll~~g--ad~~~~~i~  160 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHL--------HVLNRLCELA--PTEIMAMIQ  160 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCH--------HHHHHHHHSC--TTTHHHHHS
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCH--------HHHHHHHhCC--CCccccccC
Confidence            35699999999999999999988865211 011245678899999999999        9999999998  43   2222


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCcccc--CCCCCChHHHHHH-HcCChHHHHHHHhhcCCCccccCCCCccHHH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNI--RGGLDTLPIHEAA-YKGHKNTFQYLLEVTHGVDIYSGNDGARVLL  166 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  166 (227)
                      +.. .||||+|+..|+.+++++|++++++ ++.  .+..|.||||+|+ ..|+.+++++|++.|+.        |.||||
T Consensus       161 ~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~  230 (376)
T 2aja_A          161 AEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEI  230 (376)
T ss_dssp             HHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHH
T ss_pred             CCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHH
Confidence            223 8999999999999999999999887 455  7778899999999 99999999999986632        789999


Q ss_pred             HHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          167 LLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       167 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      .|+..|+.+++++|++.+ ......    .++++.|+..+
T Consensus       231 ~Aa~~g~~evv~lL~~~g-a~~~~~----~~~l~~A~~~g  265 (376)
T 2aja_A          231 HEFEYGEKYVNPFIARHV-NRLKEM----HDAFKLSNPDG  265 (376)
T ss_dssp             CTTTTTTTTHHHHHHHHH-HHHHHH----HTTTTTTSSSS
T ss_pred             HHHHCCCHHHHHHHHhcC-cccccc----cHHHHHHHHCC
Confidence            999999999999998773 322222    23566665544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=8.7e-24  Score=143.75  Aligned_cols=112  Identities=14%  Similarity=0.063  Sum_probs=103.3

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  169 (227)
                      +..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.|++++ .++..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHH
Confidence            34678999999999999999999999998 79999999999999999999999999999999999 99999999999999


Q ss_pred             HhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          170 AANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       170 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      ..++.+++++|++. +.+.+.+|..|.||+|+|..
T Consensus        82 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           82 YEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCC
T ss_pred             HcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHhCC
Confidence            99999999999987 66678999999999999843

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=4.5e-24  Score=162.07  Aligned_cols=128  Identities=18%  Similarity=0.170  Sum_probs=116.6

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC-C
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG-G  125 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~  125 (227)
                      +..|.||||+|+..|+.        +++++|++ +  .+++.+|..|.||||+|+..|+.+++++|++++++ ++.++ .
T Consensus        42 ~~~g~t~L~~A~~~g~~--------~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~  109 (244)
T 3ui2_A           42 VSEYETPWWTAARKADE--------QALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMR  109 (244)
T ss_dssp             HHHHHHHHHHHHTTTCH--------HHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSS
T ss_pred             ccCCCCHHHHHHHcCCH--------HHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCC
Confidence            45689999999999999        99999999 7  88999999999999999999999999999999999 67777 8


Q ss_pred             CCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          126 LDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       126 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      .|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..+                  ....+.||+++|+..
T Consensus       110 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~  170 (244)
T 3ui2_A          110 GGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREIL------------------KTTPKGNPMQFGRRI  170 (244)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHc
Confidence            89999999999999999999999999999 99999999999998622                  125689999999873

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=2.1e-24  Score=161.51  Aligned_cols=135  Identities=16%  Similarity=0.131  Sum_probs=112.7

Q ss_pred             hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhc-CCccccccC
Q 027136           11 EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASK-VDPQTLARQ   89 (227)
Q Consensus        11 ~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~-~~~~~~~~~   89 (227)
                      .+..|.||||.|+..|+.++++.|++.+. .++.+ +..|.||||+|+..|+.        +++++|++. +  ++++.+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~~g--~~~~~~  136 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGL-DKAGSTALYWACHGGHK--------DIVEMLFTQPN--IELNQQ  136 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHTTSTT--CCCCCC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCC-Ccccc-CCCCCCHHHHHHHcCCH--------HHHHHHHcCCC--CCcccc
Confidence            34567899999999999999999999876 45556 88999999999999999        999999999 7  889999


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCC
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGN  159 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  159 (227)
                      |..|.||||+|+..|+.+++++|++++++ ++.+|..|.|||++|+..+..++++.|+..++... ..+.
T Consensus       137 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~-~~~~  204 (222)
T 3ehr_A          137 NKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT-LSNA  204 (222)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhhh-ccch
Confidence            99999999999999999999999999999 79999999999999999999999999999988765 4443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=4.7e-23  Score=159.30  Aligned_cols=123  Identities=16%  Similarity=0.136  Sum_probs=114.0

Q ss_pred             ccHHHHHHHhcCccccchhHHHHHHHHHhcCCccc------cccCCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCccc
Q 027136           51 SSTIFHAIVELLVDVESDEATCLLDKLASKVDPQT------LARQDEHGYTALFLCAGK---GNLRALKVLVKCNPNLTN  121 (227)
Q Consensus        51 ~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~------~~~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~  121 (227)
                      .++|+.|+..|+.        +.+..+++.+  .+      ++..+..|.||||+|+..   ++.+++++|++++++ ++
T Consensus       131 l~~l~~a~~~~d~--------~~~~~ll~~g--~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in  199 (278)
T 1dcq_A          131 LHSLCEAVKTRDI--------FGLLQAYADG--VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LD  199 (278)
T ss_dssp             HHHHHHHHHTTCH--------HHHHHHHHTT--CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TT
T ss_pred             hhhhhhHhhhccc--------HHHHHHHHhh--cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-cc
Confidence            3589999999999        9999999998  55      444578899999999999   899999999999999 79


Q ss_pred             cCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCC
Q 027136          122 IRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       122 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      .+|..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+..|+.+++++|++.+.
T Consensus       200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999999999 999999999999999999999999998744

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=3.2e-23  Score=165.71  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=118.5

Q ss_pred             CCCccHHHHHHHh-cCccccchhHHHHHHHHHhcCCccccccCC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCC
Q 027136           48 APGSSTIFHAIVE-LLVDVESDEATCLLDKLASKVDPQTLARQD--EHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRG  124 (227)
Q Consensus        48 ~~g~t~L~~a~~~-~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~--~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~  124 (227)
                      ..+.|+||.|+.. ++.        +++++|++.+  ++++..+  ..|.||||+|+..|+.+++++|++++++ ++..|
T Consensus       197 ~~~~t~L~~Aa~~~g~~--------~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d  265 (368)
T 3jue_A          197 LHPGALLFRASGHPPSL--------PTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQAD  265 (368)
T ss_dssp             CCHHHHHHHHTSSSCCH--------HHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             CCCCcHHHHHHHccCCH--------HHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCC
Confidence            3456899999999 999        9999999999  8888887  8899999999999999999999999999 79999


Q ss_pred             CCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCC--CccccccccccHHHHH
Q 027136          125 GLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPT--IGRDSIDSRRIVLNKL  202 (227)
Q Consensus       125 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~l~~a  202 (227)
                      ..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+.....  .....+..+.|+++++
T Consensus       266 ~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~  344 (368)
T 3jue_A          266 SAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF  344 (368)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence            999999999999999999999999999999 9999999999999999999999999976332  3334556788998887


Q ss_pred             hhC
Q 027136          203 AQK  205 (227)
Q Consensus       203 ~~~  205 (227)
                      ...
T Consensus       345 ~~~  347 (368)
T 3jue_A          345 RDF  347 (368)
T ss_dssp             ---
T ss_pred             HHH
Confidence            653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1e-24  Score=174.98  Aligned_cols=166  Identities=17%  Similarity=0.087  Sum_probs=132.5

Q ss_pred             cccHHHHHHHH-hCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc-ccccCCC
Q 027136           14 VRYWPLYRMIE-KNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ-TLARQDE   91 (227)
Q Consensus        14 ~~~~~L~~a~~-~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~-~~~~~~~   91 (227)
                      .+.++++.|.. .++.+.++.+++.+.         ++.||||+|+..|+.        +++++|++.+.+. .....+.
T Consensus        64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~---------~~~T~Lh~Aa~~G~~--------e~v~~Ll~~ga~~~~~~~~~~  126 (376)
T 2aja_A           64 RQLLCLYYAHYNRNAKQLWSDAHKKGI---------KSEVICFVAAITGCS--------SALDTLCLLLTSDEIVKVIQA  126 (376)
T ss_dssp             HHHHHHHHHHTTTTCTTHHHHHHHHTC---------CHHHHHHHHHHHCCH--------HHHHHHTTC--CCSSCC--CH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCC---------CcCCHHHHHHHcCCH--------HHHHHHHHcCCcHHHHHHhcc
Confidence            34567777765 577888888776653         236999999999999        9999999998321 1123445


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCc--cccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccc--cCCCCccHHHH
Q 027136           92 HGYTALFLCAGKGNLRALKVLVKCNPNL--TNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIY--SGNDGARVLLL  167 (227)
Q Consensus        92 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~L~~  167 (227)
                      .+.||||+|+..|+.+++++|++++++.  .+..+.. .||||+|+..|+.+++++|++.|++++ .  .+..|.||||+
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~-~~~~d~~g~TpL~~  204 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA-TAMIQAENYYAFRW  204 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH-HHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc-hhccCCCCCCHHHH
Confidence            6789999999999999999999999641  1223333 999999999999999999999999987 6  78889999999


Q ss_pred             HH-HhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          168 LI-AANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       168 a~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      |+ ..|+.+++++|++. +.       .|.||++.|+.++
T Consensus       205 Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g  236 (376)
T 2aja_A          205 AAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYG  236 (376)
T ss_dssp             HHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTT
T ss_pred             HHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCC
Confidence            99 99999999999974 32       3899999999865

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=5.5e-22  Score=153.33  Aligned_cols=128  Identities=20%  Similarity=0.283  Sum_probs=116.9

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcc-----cccccCCCCccHHHHHHHh---cCccccchhHHHHHHHHHhcCCccc
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDA-----LTAKTVAPGSSTIFHAIVE---LLVDVESDEATCLLDKLASKVDPQT   85 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~-----~~~~~~~~g~t~L~~a~~~---~~~~~~~~~~~~~~~~Ll~~~~~~~   85 (227)
                      ...++|+.|+..|+.+.++.++..+.+.     +... +..|.||||+|+..   |+.        +++++|++.+  ++
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~~--------~~v~~Ll~~g--a~  197 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANG-HEPDETALHLAVRSVDRTSL--------HIVDFLVQNS--GN  197 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTTH--------HHHHHHHHHC--SC
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhcccccc-ccCCCCcchHHHHhcccchH--------HHHHHHHHCC--CC
Confidence            3468999999999999999999988643     2222 67899999999999   888        9999999999  99


Q ss_pred             cccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCC
Q 027136           86 LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGV  153 (227)
Q Consensus        86 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  153 (227)
                      ++.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++.|++.
T Consensus       198 in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999 7999999999999999999999999999998864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=3e-22  Score=129.38  Aligned_cols=89  Identities=29%  Similarity=0.408  Sum_probs=46.7

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhC
Q 027136           93 GYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAAN  172 (227)
Q Consensus        93 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~  172 (227)
                      |.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..++.+++++|++.|++++ .++..|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcC
Confidence            44555555555555555555555554 35555555555555555555555555555555555 55555555555555555


Q ss_pred             cHHHHHHHHHh
Q 027136          173 LYDVALDLLKL  183 (227)
Q Consensus       173 ~~~~~~~Ll~~  183 (227)
                      +.+++++|++.
T Consensus        80 ~~~~~~~Ll~~   90 (93)
T 1n0q_A           80 HLEVVKLLLEA   90 (93)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHHHHHHHHHc
Confidence            55555555544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=4.9e-22  Score=128.41  Aligned_cols=80  Identities=24%  Similarity=0.210  Sum_probs=67.3

Q ss_pred             CCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          126 LDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       126 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      +|+||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..++.+++++|++. +.+.+.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHc
Confidence            47889999999999999999999998888 8888899999999999999999988876 555678888899999998876


Q ss_pred             CC
Q 027136          206 PY  207 (227)
Q Consensus       206 ~~  207 (227)
                      +.
T Consensus        79 ~~   80 (93)
T 1n0q_A           79 GH   80 (93)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=3.9e-22  Score=159.50  Aligned_cols=146  Identities=10%  Similarity=0.028  Sum_probs=116.3

Q ss_pred             hcccHHHHHHHHh-CCHHHHHHHHHcCCcccccccC--CCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           13 YVRYWPLYRMIEK-NDWRGVEDFVTNHPDALTAKTV--APGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        13 ~~~~~~L~~a~~~-g~~~~v~~ll~~~~~~~~~~~~--~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      ..+.++||.|+.. |+.++++.|++.+. .++.. +  ..|.||||+|+..|+.        +++++|++.+  ++++..
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-dvn~~-~~~~~g~TpLh~Aa~~g~~--------~iv~~LL~~G--advn~~  264 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGA-DVNWV-NGGQDNATPLIQATAANSL--------LACEFLLQNG--ANVNQA  264 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTC-CTTCC-CTTTTCCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCC
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCC-CCCcc-ccccCCCCHHHHHHHCCCH--------HHHHHHHHcC--CCCCCC
Confidence            4456899999999 99999999999886 44444 5  7899999999999999        9999999999  999999


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCc--cccCCCCccHHHH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVD--IYSGNDGARVLLL  167 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~--~~~~~~g~t~L~~  167 (227)
                      |..|.||||+|+..++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|+..+....  ...+..+.|++++
T Consensus       265 d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i  343 (368)
T 3jue_A          265 DSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI  343 (368)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence            99999999999999999999999999999 79999999999999999999999999998764421  1455667888776


Q ss_pred             HHHh
Q 027136          168 LIAA  171 (227)
Q Consensus       168 a~~~  171 (227)
                      +...
T Consensus       344 ~~~~  347 (368)
T 3jue_A          344 FRDF  347 (368)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            6553

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=4.2e-22  Score=133.76  Aligned_cols=106  Identities=22%  Similarity=0.235  Sum_probs=68.1

Q ss_pred             CCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCC
Q 027136           47 VAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGL  126 (227)
Q Consensus        47 ~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (227)
                      +..|.||||+|+..|+.        +++++|++.+  .+++..+..|.||||+|+..++.+++++|++++++ ++.+|..
T Consensus         6 d~~g~t~L~~A~~~~~~--------~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~   74 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHA--------EEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKD   74 (115)
T ss_dssp             SCSSCCHHHHHHHHTCH--------HHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTT
T ss_pred             CCCCCCHHHHHHHcCCH--------HHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCC
Confidence            55666666666666666        6666666666  55666666666666666666666666666666666 4666666


Q ss_pred             CChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccH
Q 027136          127 DTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARV  164 (227)
Q Consensus       127 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  164 (227)
                      |.||||+|+..++.+++++|++.|++++ .++..|.||
T Consensus        75 g~tpl~~A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~  111 (115)
T 2l6b_A           75 GNTPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSSHH  111 (115)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTSSSHH-HHSCCCC--
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCC-cCCcccccc
Confidence            6666666666666666666666666666 566666555

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=7.7e-22  Score=132.43  Aligned_cols=109  Identities=20%  Similarity=0.143  Sum_probs=100.1

Q ss_pred             cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHH
Q 027136           88 RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLL  167 (227)
Q Consensus        88 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  167 (227)
                      .+|..|.||||+|+..++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|++.|++++ .++..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHH
Confidence            5678899999999999999999999999998 79999999999999999999999999999999999 999999999999


Q ss_pred             HHHhCcHHHHHHHHHhCCCCccccccccccHH
Q 027136          168 LIAANLYDVALDLLKLHPTIGRDSIDSRRIVL  199 (227)
Q Consensus       168 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  199 (227)
                      |+..++.+++++|++. +++.+.++..|.+|-
T Consensus        82 A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAK-GADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTT-SSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHc-CCCCCcCCccccccc
Confidence            9999999999999976 667788899998875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.4e-19  Score=119.29  Aligned_cols=94  Identities=20%  Similarity=0.198  Sum_probs=84.6

Q ss_pred             ccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccH
Q 027136           85 TLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARV  164 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  164 (227)
                      .....+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|++++ .++..|+||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tp   93 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTA   93 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcH
Confidence            3445677889999999999999999999999998 78999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHhCcHHHHHHH
Q 027136          165 LLLLIAANLYDVALDL  180 (227)
Q Consensus       165 L~~a~~~~~~~~~~~L  180 (227)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=9.6e-19  Score=116.38  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=84.9

Q ss_pred             cCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCC
Q 027136           46 TVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGG  125 (227)
Q Consensus        46 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  125 (227)
                      .+.+|.||||+|+..|+.        +++++|++.+  ++++.+|..|.||||+|+..++.+++++|++++++ ++.+|.
T Consensus        20 ~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~   88 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQD--------DEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDK   88 (110)
T ss_dssp             --CCHHHHHHHHHHHTCH--------HHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             cCCccchHHHHHHHcCCH--------HHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccc
Confidence            378899999999999999        9999999999  88999999999999999999999999999999999 799999


Q ss_pred             CCChHHHHHHHcCChHHHHHH
Q 027136          126 LDTLPIHEAAYKGHKNTFQYL  146 (227)
Q Consensus       126 ~g~t~l~~a~~~~~~~~~~~L  146 (227)
                      .|.||||+|+..|+.+++++|
T Consensus        89 ~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHh
Confidence            999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.003
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 95  TALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHG 152
           T L + +  G+L  +K L++   +PN++N++   +T P+H AA  GH    +YLL+  + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ET-PLHMAARAGHTEVAKYLLQ--NK 56

Query: 153 VDI-YSGNDGARVLLLLIAANLYDVALDLLKLHPTI 187
             +     D    L         ++   LL+ +   
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 92

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
            +    T L + A  G+    K L++    + N +   D  P+H AA  GH N  + LLE
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLE 87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
           + + GY+ L   A +G+   + +L+K   +PN  +  G   T P+  A   G+ +    L
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG---TTPLAIAKRLGYISVTDVL 382

Query: 147 LEVT 150
             VT
Sbjct: 383 KVVT 386

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
             + G+T L + A  G +R  ++L++ + +  N  G     P+H A +  + +  + LL 
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 149 VTHGVDIYS-GNDGARVLLLLIAANLYDVALDLLKLHP 185
              G   +S   +G   L +    N  +VA  LL+   
Sbjct: 187 --RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
               GYT L + +  GN++ +K  +  +    N +  L   P+H+AA +GH +    LL+
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 149 VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKL 183
             +G      +      L +     Y    D+LK+
Sbjct: 352 --NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 384

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 88  RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLL 147
           R  + G TAL + A KG    LK+L++   ++        T P+H AA+ G +   + L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT-PLHAAAHWGKEEACRILV 252

Query: 148 EVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLH 184
           E  +  D+ + N   +    +   ++     +L K  
Sbjct: 253 E--NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
           + E G T L L   K +L  ++ L++      N         +  A     K   + L +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 149 VTHGVDI 155
              G   
Sbjct: 275 --RGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 88  RQDEHGYTALFLCAGKGNLRALKVLVK---CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQ 144
           R  + G TAL   A KG++  LK+L+     + N  +  G    +    ++         
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202

Query: 145 YLLEVTHGVDI-YSGNDGARVLLLLIAANLYDVALDLLKLH 184
           +LL + HG D+   G  G   L+L +      +   LL+  
Sbjct: 203 HLL-LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 7e-06
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 86  LARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTF 143
                E G TAL L     +   L  L+         +++  L    +H AA  G  +T 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 144 QYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDS 194
           + L     GV +        +  L      +  A  LL+  P+  RD+ D+
Sbjct: 62  EKLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDT 111

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE 148
           +   G TAL   A   N+  +K LV    +  + +      PI  AA +G      YL++
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 149 VTHGVDIYSGN-DGARVLLLLIAANLYDVALDLLK 182
              G  + + +        L  A N +++     +
Sbjct: 243 --QGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 21/164 (12%), Positives = 47/164 (28%), Gaps = 11/164 (6%)

Query: 2   INSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVEL 61
               D   +   V+        +   +  + D++        +         I  + +  
Sbjct: 133 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 192

Query: 62  LVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRA-----LKVLVKCN 116
                      L+  +  K   + +        +      G+          LK ++   
Sbjct: 193 CSAAAKYYLDILMGWIV-KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 251

Query: 117 PNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGND 160
            N  +  G  DT  ++ AA  G+ +    LL+  +G D +  N 
Sbjct: 252 LNAQDSNG--DT-CLNIAARLGNISIVDALLD--YGADPFIANK 290

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 9/135 (6%)

Query: 7   QGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVE----LL 62
               E  +    L+ +I  +   G       + D L    V   +  I     E      
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 228

Query: 63  VDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVK--CNPNLT 120
                 + + L +     +    L  QD +G T L + A  GN+  +  L+    +P + 
Sbjct: 229 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 288

Query: 121 NIRGGLDTLPIHEAA 135
           N  G     P+   A
Sbjct: 289 NKSG---LRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 6/51 (11%), Positives = 16/51 (31%)

Query: 95  TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQY 145
             L     +     ++ L+   P+L   +     +P+H +          +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF 52

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 5/98 (5%)

Query: 89  QDEHGYTALFLCAGKGNLRALKVLVK--CNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYL 146
                Y A  L A  G+L  L  L +      +  I+          AA  GH +    L
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH-AFRLAAENGHLHVLNRL 180

Query: 147 LEVTHGVDIY--SGNDGARVLLLLIAANLYDVALDLLK 182
            E+            +        +    ++V   LL 
Sbjct: 181 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-34  Score=218.87  Aligned_cols=183  Identities=16%  Similarity=0.068  Sum_probs=162.3

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCC--cccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHP--DALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~--~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      +.+|.||||+|++.|+.++++.|++.+.  ..++.+ +..|.||||+|+..|+.        +++++|++.+  ++++.+
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~-~~~g~TpL~~A~~~g~~--------~iv~~Ll~~g--a~i~~~   74 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEA--------STVEKLYAAG--AGVLVA   74 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--CCSSCC
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCc-CCCCCCccchHHhhccc--------cccccccccc--cccccc
Confidence            4679999999999999999999998753  334445 88899999999999999        9999999999  999999


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCc----------------------------------------------cccC
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNL----------------------------------------------TNIR  123 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~----------------------------------------------~~~~  123 (227)
                      |..|.||||+|+..++.+++++|++.....                                              ++.+
T Consensus        75 d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~  154 (255)
T d1oy3d_          75 ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE  154 (255)
T ss_dssp             CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC
T ss_pred             ccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccc
Confidence            999999999999999999999997652210                                              2457


Q ss_pred             CCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHh
Q 027136          124 GGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLA  203 (227)
Q Consensus       124 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  203 (227)
                      +..|.||||+|+..++.+++++|++.++..+...+..|.||||+|+..++.+++++|++. +.+.+.+|..|.||||+|+
T Consensus       155 d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-gadin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             cccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence            888999999999999999999999999998856778899999999999999999999976 6777899999999999999


Q ss_pred             hCC
Q 027136          204 QKP  206 (227)
Q Consensus       204 ~~~  206 (227)
                      .++
T Consensus       234 ~~~  236 (255)
T d1oy3d_         234 LRP  236 (255)
T ss_dssp             TSS
T ss_pred             HCC
Confidence            844

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-34  Score=210.94  Aligned_cols=180  Identities=16%  Similarity=0.071  Sum_probs=164.2

Q ss_pred             chhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccccc
Q 027136            9 EDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLAR   88 (227)
Q Consensus         9 ~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~   88 (227)
                      +..+..|+||||+|+..|+.++++.++....... .. ...+.++++.++..++.        +++++|++.+  .+++.
T Consensus        31 ~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~~~~--------~i~~~Ll~~~--~d~~~   98 (223)
T d1uoha_          31 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DK-DDAGWSPLHIAASAGRD--------EIVKALLGKG--AQVNA   98 (223)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CC-CTTCCCHHHHHHHHTCH--------HHHHHHHHTT--CCTTC
T ss_pred             cCcCCCCCCHHHHHHHhhhhcccccccccccccc-cc-ccccccccccccccccc--------chhHHHhccC--ceeEe
Confidence            3456679999999999999999999888875332 33 56678999999999999        9999999999  88999


Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHH
Q 027136           89 QDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLL  168 (227)
Q Consensus        89 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  168 (227)
                      .|..|.||||+|+..++.+++++|++++.+ ++.++..|.||||+|+..++.+++++|...+.+++ .++..|+||||.|
T Consensus        99 ~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~-~~d~~g~TpL~~A  176 (223)
T d1uoha_          99 VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN-IQDTEGNTPLHLA  176 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHH
T ss_pred             eCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhccccceee-eccCCCCceeccc
Confidence            999999999999999999999999999998 79999999999999999999999999999999999 9999999999999


Q ss_pred             HHhCcHHHHHHHHHhCCCCccccccccccHHHHHh
Q 027136          169 IAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLA  203 (227)
Q Consensus       169 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  203 (227)
                      +..|+.+++++|++. +++.+.+|..|+||||+|+
T Consensus       177 a~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         177 CDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             HHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHCC
T ss_pred             cccCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH
Confidence            999999999999977 6777899999999999973

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-32  Score=201.97  Aligned_cols=175  Identities=18%  Similarity=0.242  Sum_probs=136.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccc---------
Q 027136           17 WPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLA---------   87 (227)
Q Consensus        17 ~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~---------   87 (227)
                      +|||+|+..|+.+.++.|++..+..++.+ +.+|.||||+|+..|+.        +++++|++.+  ++++         
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~G~TpL~~A~~~g~~--------~iv~~Ll~~g--a~~~~~~~~~~~~   70 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAH--------EITSFLLSKM--ENVNLDDYPDDSG   70 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHTTC--TTCCGGGCCCTTS
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHcCCc--------cccchhhhhh--ccccccccccccc
Confidence            57777777777777777777666555555 67777777777777777        7777777766  3322         


Q ss_pred             -----------------------------cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcC
Q 027136           88 -----------------------------RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKG  138 (227)
Q Consensus        88 -----------------------------~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  138 (227)
                                                   ..+..+.++++.++..++.++++.|+..+.. ....+..|+||||+|+..|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~  149 (229)
T d1ixva_          71 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVG  149 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhcc
Confidence                                         2233344555555555666777777777777 5778999999999999999


Q ss_pred             ChHHHHHHHhhc-CCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhh
Q 027136          139 HKNTFQYLLEVT-HGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQ  204 (227)
Q Consensus       139 ~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  204 (227)
                      +.+++++|++.+ ..++ .++.+|+||||+|+..|+.+++++|+++++++.+.+|..|+||||+|+.
T Consensus       150 ~~~~~~~Ll~~~~~~in-~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         150 SLKLIELLCGLGKSAVN-WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             CHHHHHHHHTTTCCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             ccccccccccccccccc-ccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            999999999987 4566 8999999999999999999999999988788888999999999999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.7e-31  Score=194.52  Aligned_cols=178  Identities=14%  Similarity=0.085  Sum_probs=164.7

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGY   94 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   94 (227)
                      +.+.|+.++..|+.+.++.++...+..++.+ |..|+||||+|+..|+.        +++++|+..+  ......+..+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~-D~~G~TpLh~Aa~~g~~--------e~~~~l~~~~--~~~~~~~~~~~   71 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWACSAGHT--------EIVEFLLQLG--VPVNDKDDAGW   71 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHHT--CCSCCCCTTCC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCc-CCCCCCHHHHHHHhhhh--------cccccccccc--ccccccccccc
Confidence            3478899999999999999999988777666 99999999999999999        9999999998  66777777889


Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      ++++.++..++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..++.
T Consensus        72 ~~~~~~~~~~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-~~~~~~~t~L~~a~~~~~~  149 (223)
T d1uoha_          72 SPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNL  149 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccccccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCccchhhhhcCCc
Confidence            999999999999999999999998 79999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          175 DVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       175 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +++++|++. +.+.+.+|..|+||||.|+..+
T Consensus       150 ~~~~~L~~~-~~~i~~~d~~g~TpL~~Aa~~g  180 (223)
T d1uoha_         150 KMIHILLYY-KASTNIQDTEGNTPLHLACDEE  180 (223)
T ss_dssp             HHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTT
T ss_pred             chhhhhccc-cceeeeccCCCCceeccccccC
Confidence            999998866 5667899999999999999854

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.8e-31  Score=197.88  Aligned_cols=167  Identities=13%  Similarity=0.002  Sum_probs=146.5

Q ss_pred             CchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc----
Q 027136            8 GEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP----   83 (227)
Q Consensus         8 ~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~----   83 (227)
                      .+.++..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||+|+..++.        +++++|++....    
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga-~i~~~-d~~g~tpL~~A~~~~~~--------~~~~~Ll~~~~~~~~~  107 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGA-GVLVA-ERGGHTALHLACRVRAH--------TCACVLLQPRPSHPRD  107 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSSCC-CTTSCCHHHHHTTTTCH--------HHHHHHSSSCCSSCCC
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccc-ccccc-ccccchhhhhhhccCch--------HHHHHHHhhccchhcc
Confidence            34566789999999999999999999999986 45555 88999999999999999        888888664311    


Q ss_pred             -----------------------------------------cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCcccc
Q 027136           84 -----------------------------------------QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNI  122 (227)
Q Consensus        84 -----------------------------------------~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~  122 (227)
                                                               ..++.++..|.||||+|+..++.+++++|++.+.+....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~  187 (255)
T d1oy3d_         108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP  187 (255)
T ss_dssp             C-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             cchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccc
Confidence                                                     114567888999999999999999999999999885556


Q ss_pred             CCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCC
Q 027136          123 RGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       123 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      .+..|.||||+|+..++.+++++|++.|++++ .++..|.||||+|+..++.+++++|++.++
T Consensus       188 ~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin-~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            67889999999999999999999999999999 999999999999999999999999998744

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.5e-30  Score=200.51  Aligned_cols=177  Identities=14%  Similarity=0.099  Sum_probs=158.2

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHG   93 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   93 (227)
                      ++.|+|+.|+..|+.+.|+.|++.+. +++.+ +.+|.||||+|+..|+.        +++++|++.+  .+....+..+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Ga-dvn~~-d~~G~T~L~~A~~~g~~--------eiv~~Ll~~~--~~~~~~~~~~  106 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGA-DINYA-NVDGLTALHQACIDDNV--------DMVKFLVENG--ANINQPDNEG  106 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCC-CTTCB-CTTCCBHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCCTTS
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCC-CCCcc-CCCCCcHHHHHHhcCCc--------eeeeeecccc--cccccccccc
Confidence            35699999999999999999999986 46566 89999999999999999        9999999999  7777888889


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCc------------------------------------------------------
Q 027136           94 YTALFLCAGKGNLRALKVLVKCNPNL------------------------------------------------------  119 (227)
Q Consensus        94 ~t~L~~a~~~~~~~~~~~Ll~~~~~~------------------------------------------------------  119 (227)
                      .+||+.++..++.++++.|++++...                                                      
T Consensus       107 ~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (291)
T d1s70b_         107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN  186 (291)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhc
Confidence            99999999999999999998875432                                                      


Q ss_pred             -----cccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccc
Q 027136          120 -----TNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDS  194 (227)
Q Consensus       120 -----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  194 (227)
                           ....+..|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++. +++.+.+|..
T Consensus       187 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din-~~~~~g~TpL~~A~~~g~~~iv~lLl~~-Gadv~~~d~~  264 (291)
T d1s70b_         187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKV  264 (291)
T ss_dssp             HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             ccccccccccCCCCChhhHHHHcCChhhhcccccceeccc-ccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCC
Confidence                 02356778899999999999999999999999999 9999999999999999999999999976 6667899999


Q ss_pred             cccHHHHHhh
Q 027136          195 RRIVLNKLAQ  204 (227)
Q Consensus       195 g~t~l~~a~~  204 (227)
                      |+||||+|++
T Consensus       265 G~TaL~~A~e  274 (291)
T d1s70b_         265 GQTAFDVADE  274 (291)
T ss_dssp             SCCTTTSCCS
T ss_pred             CCCHHHHHHH
Confidence            9999999975

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-31  Score=197.05  Aligned_cols=180  Identities=15%  Similarity=0.050  Sum_probs=155.1

Q ss_pred             cccHHHHHHHHhCCHHHHHHHH----HcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFV----TNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQ   89 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll----~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~   89 (227)
                      +|.||||+|+..|+.+.+..++    ..+. .++.+ +..|+||||+|+..|+.        +++++|++.+  ++++..
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~-~in~~-d~~g~TpLh~A~~~~~~--------~iv~~L~~~g--~d~~~~   68 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLA-FLNFQ-NNLQQTPLHLAVITNQP--------EIAEALLGAG--CDPELR   68 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CC-CCCCC-CTTCCCHHHHHHHTTCH--------HHHHCCCSCC--CCSCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCC-CcccC-CCCCCcccccccccccc--------cccccccccc--cccccc
Confidence            4899999999999976655443    3343 56666 88999999999999999        9999999999  889999


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCc-----cccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccH
Q 027136           90 DEHGYTALFLCAGKGNLRALKVLVKCNPNL-----TNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARV  164 (227)
Q Consensus        90 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  164 (227)
                      |..|.|||+.++..+..++++.|+..+...     .......|.||||.|+..++.+++++|+..|..++...+.+|.||
T Consensus        69 d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~  148 (221)
T d1iknd_          69 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA  148 (221)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             ccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCc
Confidence            999999999999999999999999874331     344566789999999999999999999999999874556789999


Q ss_pred             HHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          165 LLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       165 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ||.|+..|+.+++++|++. +.+.+.+|..|.||||+|+.++
T Consensus       149 L~~A~~~g~~~~v~~Ll~~-gad~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         149 LHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             HHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSS
T ss_pred             cccccccccHHHHHHHHhc-CCcccccCCCCCCHHHHHHHCC
Confidence            9999999999999999976 6667899999999999998744

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-29  Score=175.95  Aligned_cols=152  Identities=21%  Similarity=0.195  Sum_probs=140.5

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcH
Q 027136           17 WPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTA   96 (227)
Q Consensus        17 ~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~   96 (227)
                      ..|+.|+..|+.+.|+.|+++++..++.+ +..|.||||+|+ .++.        +++++|++.+  .+++..+..|.+|
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~~--------~~v~~Ll~~~--~~~~~~~~~~~~~   71 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGST--------AIALELLKQG--ASPNVQDTSGTSP   71 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTCH--------HHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-cccc--------cccccccccc--ccccccccccccc
Confidence            45999999999999999999876677666 899999999987 4888        9999999999  8889999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHH
Q 027136           97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDV  176 (227)
Q Consensus        97 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~  176 (227)
                      ++.++..++.++++++++.+++ ++.+|..|.||||+|+..|+.+++++|+ .|++++ .++.+|+||||+|+..|+.++
T Consensus        72 l~~~~~~~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~d~~G~TpL~~A~~~g~~~i  148 (156)
T d1bd8a_          72 VHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CCCTTSCCHHHHHHHSCCHHH
T ss_pred             cccccccccccccccccccccc-cccccCCCCeeecccccccccccccccc-cccccc-ccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999998 6899999999999999999999999887 688888 999999999999999999999


Q ss_pred             HHHHHHh
Q 027136          177 ALDLLKL  183 (227)
Q Consensus       177 ~~~Ll~~  183 (227)
                      +++|+++
T Consensus       149 v~~Ll~h  155 (156)
T d1bd8a_         149 VDILQGH  155 (156)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.3e-29  Score=193.56  Aligned_cols=180  Identities=12%  Similarity=0.081  Sum_probs=153.4

Q ss_pred             hcccHHHHHHHHhCCHHHHHHHHHc--------CCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc
Q 027136           13 YVRYWPLYRMIEKNDWRGVEDFVTN--------HPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus        13 ~~~~~~L~~a~~~g~~~~v~~ll~~--------~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      ..|.||||+|+..|+.++++.|+..        |. +++.+ +..|+||||+|+..|+.        +++++|++.|  +
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Ga-dvn~~-d~~G~TpLh~A~~~g~~--------~iv~~Ll~~G--a   98 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAM-DCDENTPLMLAVLARRR--------RLVAYLMKAG--A   98 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-CTTCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT--C
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCC-Ccccc-CCCCCeeeccccccccc--------cccccccccc--c
Confidence            3599999999999999998877643        33 56566 89999999999999999        9999999999  8


Q ss_pred             ccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCC-----C-----------------------------------------
Q 027136           85 TLARQDEHGYTALFLCAGKGNLRALKVLVKCNP-----N-----------------------------------------  118 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~-----~-----------------------------------------  118 (227)
                      +++.++..|.|||++|...++.++++++.....     +                                         
T Consensus        99 d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (277)
T d2fo1e1          99 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  178 (277)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccc
Confidence            999999999999999999998887777755410     0                                         


Q ss_pred             ccccCCCCCChHHHHHHHcCChHHHHHHHh-hcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCcccccccccc
Q 027136          119 LTNIRGGLDTLPIHEAAYKGHKNTFQYLLE-VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRI  197 (227)
Q Consensus       119 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  197 (227)
                      .....+..|.||||+++..++.+++++++. .+.+.+ .++..|+||||+|+..|+.+++++|++. +++.+.+|..|.|
T Consensus       179 ~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~-~~d~~g~tpL~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T  256 (277)
T d2fo1e1         179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-KQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHT  256 (277)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCC
T ss_pred             cccccccCCCCcccccccccccccccccccccccccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCC
Confidence            013466779999999999999999987664 566666 8999999999999999999999999987 6667899999999


Q ss_pred             HHHHHhhCC
Q 027136          198 VLNKLAQKP  206 (227)
Q Consensus       198 ~l~~a~~~~  206 (227)
                      |||+|++++
T Consensus       257 ~L~~A~~~~  265 (277)
T d2fo1e1         257 ARQLAQANN  265 (277)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999999954

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-28  Score=172.92  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=141.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcH
Q 027136           17 WPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTA   96 (227)
Q Consensus        17 ~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~   96 (227)
                      ++||.|+..|+.++|+.|++.+. +++.+ +..|.||||+|+ .++.        +++++|++.+  ++++..+..+.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~-d~n~~-d~~g~TpL~~A~-~~~~--------ei~~~Ll~~~--a~~~~~~~~~~~~   69 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV-NVNAQ-NGFGRTALQVMK-LGNP--------EIARRLLLRG--ANPDLKDRTGFAV   69 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC-CTTCC-CTTSCCHHHHCC-SSCH--------HHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-CcCcc-CCcccccccccc-cccc--------cccccccccc--cccccccccCccc
Confidence            89999999999999999999987 45566 899999999886 7899        9999999999  8899999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcC-CCccccCCCCccHHHHHHHhCcHH
Q 027136           97 LFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTH-GVDIYSGNDGARVLLLLIAANLYD  175 (227)
Q Consensus        97 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~a~~~~~~~  175 (227)
                      ++.++..+..+.++.|++.+.+ ++..+..|.+|+++|+..++.+++++|+++++ +.+ .++..|+||||+|+..++.+
T Consensus        70 l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~d~~g~TpL~~A~~~~~~~  147 (156)
T d1ihba_          70 IHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG-HRNHKGDTACDLARLYGRNE  147 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-ccCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999998 68899999999999999999999999999987 566 89999999999999999999


Q ss_pred             HHHHHHHhC
Q 027136          176 VALDLLKLH  184 (227)
Q Consensus       176 ~~~~Ll~~~  184 (227)
                      ++++|++++
T Consensus       148 iv~~Ll~~G  156 (156)
T d1ihba_         148 VVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999999763

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-28  Score=180.00  Aligned_cols=179  Identities=15%  Similarity=0.110  Sum_probs=152.2

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHc---CCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCC
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTN---HPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQD   90 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~---~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~   90 (227)
                      +|.||||+|+..|+.++++.|++.   .+..++.+ +..|.||||+|+..|+.        +++++|++.+  +..+...
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~-d~~g~TpL~~A~~~~~~--------~iv~~Ll~~g--a~~~~~~   70 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLP--------SVVRLLVTAG--ASPMALD   70 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTCCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCcc-CCCCCccceehhccccc--------cccccccccc--ccccccc
Confidence            589999999999999999988863   33355556 88999999999999999        9999999998  7777777


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHc-------------------------------------CCCccccCCCCCChHHHH
Q 027136           91 EHGYTALFLCAGKGNLRALKVLVKC-------------------------------------NPNLTNIRGGLDTLPIHE  133 (227)
Q Consensus        91 ~~~~t~L~~a~~~~~~~~~~~Ll~~-------------------------------------~~~~~~~~~~~g~t~l~~  133 (227)
                      ..+.++++.|...++.++++.+...                                     ..+........+.+|++.
T Consensus        71 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  150 (228)
T d1k1aa_          71 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH  150 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             cccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHH
Confidence            7888888888877776666655543                                     222224466678999999


Q ss_pred             HHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhC
Q 027136          134 AAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQK  205 (227)
Q Consensus       134 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  205 (227)
                      |+..+...+++.+++.|...+ .++..|.||||+|+..|+.+++++|++. +++.+.+|..|+||||+|+++
T Consensus       151 a~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         151 AVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSSH
T ss_pred             HHHhhhhhhhhhhhhhccccc-cccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhC
Confidence            999999999999999999998 8999999999999999999999999977 666789999999999999863

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.7e-28  Score=184.09  Aligned_cols=182  Identities=16%  Similarity=0.175  Sum_probs=145.8

Q ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccc--------
Q 027136           14 VRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQT--------   85 (227)
Q Consensus        14 ~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~--------   85 (227)
                      ++.|+|+.|++.|+.++|+.|++.+. .++.+.+..|.||||+|+..|+.        +++++|++.+....        
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~-din~~~~~~g~tpL~~A~~~~~~--------eiv~~L~~~~~~~~~~~~~~~~   74 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSRE--------DIVELLLRHGADPVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCC-CcCccCCCCCCCHHHHHHHcCCH--------HHhhhhccccccccccccccch
Confidence            46799999999999999999999986 45455466799999999999999        89998887652110        


Q ss_pred             ------------------------------------------------------------------cccCCCCCCcHHHH
Q 027136           86 ------------------------------------------------------------------LARQDEHGYTALFL   99 (227)
Q Consensus        86 ------------------------------------------------------------------~~~~~~~~~t~L~~   99 (227)
                                                                                        .......|.||||+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T d1wdya_          75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             hhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHH
Confidence                                                                              11223346778888


Q ss_pred             HHhcCCHHHHHHHHHc-CCCccccCCCCCChHHHHHHHcC----ChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136          100 CAGKGNLRALKVLVKC-NPNLTNIRGGLDTLPIHEAAYKG----HKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus       100 a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      |++.++.+++++|+++ +.+ ++..+..|.++...+...+    ..+++++|++.|++++ .++..|.||||.|+..|+.
T Consensus       155 A~~~~~~~~~~~Ll~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n-~~~~~g~t~L~~a~~~~~~  232 (285)
T d1wdya_         155 AAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHL  232 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHhccCCC-cccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC-ccCCCCCCccchhhhcCcH
Confidence            8888888888888865 455 5777777877776655443    2467888888888888 8899999999999999999


Q ss_pred             HHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          175 DVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       175 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +++++||+.++.+.+.+|..|.||||+|++++
T Consensus       233 ~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~  264 (285)
T d1wdya_         233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            99999999888888999999999999999943

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.6e-28  Score=168.64  Aligned_cols=150  Identities=17%  Similarity=0.110  Sum_probs=138.3

Q ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCc
Q 027136           16 YWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYT   95 (227)
Q Consensus        16 ~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t   95 (227)
                      -|||+.|++.|+.++|+.||++++. . .. +..|.||||+|+..++.        +++..++...  ......+..+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~-~-~~-~~~g~t~L~~a~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~   69 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP-F-TT-DWLGTSPLHLAAQYGHF--------STTEVLLRAG--VSRDARTKVDRT   69 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-C-CC-CTTCCCHHHHHHHHTCH--------HHHHHHHTTT--CCTTCCCTTCCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC-c-cc-ccCCCcccccccccccc--------cccccccccc--cccccccccccc
Confidence            3899999999999999999999874 3 24 78899999999999999        9999999988  556667777889


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHH
Q 027136           96 ALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYD  175 (227)
Q Consensus        96 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~  175 (227)
                      +++.++...+.+.++++...+.+ .+.++..|.||||+|+..|+.+++++|++.|++++ .++.+|.||||+|+..|+.+
T Consensus        70 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          70 PLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccccccceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999998 68899999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHH
Q 027136          176 VALDL  180 (227)
Q Consensus       176 ~~~~L  180 (227)
                      ++++|
T Consensus       148 iv~lL  152 (153)
T d1awcb_         148 LAEIL  152 (153)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99865

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-27  Score=189.80  Aligned_cols=190  Identities=18%  Similarity=0.148  Sum_probs=161.9

Q ss_pred             CCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccc--------------------------------cCCCCc
Q 027136            4 SDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAK--------------------------------TVAPGS   51 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~--------------------------------~~~~g~   51 (227)
                      .+...+..+..|.+||+.|+..|+.++++.|+..+.. ++..                                .+..|.
T Consensus       154 ~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  232 (408)
T d1n11a_         154 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV  232 (408)
T ss_dssp             TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCC
Confidence            3444455566788889999998998888888877542 1111                                245567


Q ss_pred             cHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHH
Q 027136           52 STIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPI  131 (227)
Q Consensus        52 t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  131 (227)
                      |||++|+..+..        ++++++.+..  ...+..+..|.||++.++..++.+++++|++++.+ ++..+..+.|||
T Consensus       233 t~l~~a~~~~~~--------~~~~~~~~~~--~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L  301 (408)
T d1n11a_         233 TPLHLAAQEGHA--------EMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPL  301 (408)
T ss_dssp             CHHHHHHHTTCH--------HHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHH
T ss_pred             CHHHHHHHhCcH--------hHhhhhhccc--cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccc
Confidence            778888888888        8888888887  67778888999999999999999999999999998 688899999999


Q ss_pred             HHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCCC
Q 027136          132 HEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPY  207 (227)
Q Consensus       132 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  207 (227)
                      +.++..++.++++++++.|++++ .++.+|.||||+|++.|+.+++++|++. +++.+.+|..|+||||+|++.++
T Consensus       302 ~~~~~~~~~~~~~~ll~~g~~in-~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         302 HVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             HHHHHSSCSHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             hhhcccCcceeeeeecccccccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCC
Confidence            99999999999999999999999 9999999999999999999999999977 66678999999999999999653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.1e-27  Score=187.87  Aligned_cols=177  Identities=17%  Similarity=0.100  Sum_probs=157.9

Q ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCc
Q 027136           16 YWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYT   95 (227)
Q Consensus        16 ~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t   95 (227)
                      .||||.|+..|+.++|+.|++.+. .++.. +..|.||||+|+..|+.        +++++|++.|  ++++.++..|.|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~-~in~~-d~~g~TpL~~A~~~g~~--------~iv~~Ll~~g--adi~~~~~~g~t   68 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGA-SPNVS-NVKVETPLHMAARAGHT--------EVAKYLLQNK--AKVNAKAKDDQT   68 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC-CSCCS-SSCCCCHHHHHHHHTCH--------HHHHHHHHHT--CCSSCCCTTSCC
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCC-CCCCC-CCCCCCHHHHHHHcCCH--------HHHHHHHHCc--CCCCCCCCCCCC
Confidence            389999999999999999999886 56566 88999999999999999        9999999999  889999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCc--------------------------------cccCCCCCChHHHHHHHcCChHHH
Q 027136           96 ALFLCAGKGNLRALKVLVKCNPNL--------------------------------TNIRGGLDTLPIHEAAYKGHKNTF  143 (227)
Q Consensus        96 ~L~~a~~~~~~~~~~~Ll~~~~~~--------------------------------~~~~~~~g~t~l~~a~~~~~~~~~  143 (227)
                      |||+|+..|+.+++++|+....+.                                ....+..+.++++.|+..++.+++
T Consensus        69 ~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v  148 (408)
T d1n11a_          69 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA  148 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHH
Confidence            999999999999999998764431                                244677889999999999999999


Q ss_pred             HHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          144 QYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       144 ~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      ++|++.+.+++ ..+..|.+|||.|+..++.+++++|+.. +...+..+..|.||++.+....
T Consensus       149 ~~ll~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~~~~~~  209 (408)
T d1n11a_         149 ELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQN  209 (408)
T ss_dssp             HHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcchhhhccc
Confidence            99999999999 8899999999999999999999999987 4556788899999999987644

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=4.8e-27  Score=172.29  Aligned_cols=188  Identities=13%  Similarity=0.072  Sum_probs=160.3

Q ss_pred             CcCch-hhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcc
Q 027136            6 DQGED-EYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQ   84 (227)
Q Consensus         6 ~~~~~-~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~   84 (227)
                      .+.+. .+..|.||||+|+..|+.++++.|+..+. .++.+ +..+.++++.++..+..        .......... ..
T Consensus        13 ~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~-~~n~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~   81 (209)
T d1ot8a_          13 AELNATMDKTGETSLHLAARFARADAAKRLLDAGA-DANSQ-DNTGRTPLHAAVAADAM--------GVFQILLRNR-AT   81 (209)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHTCT-TC
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcc-ccccc-ccccccccccccccccc--------cccccccccc-cc
Confidence            33444 36789999999999999999999999876 34455 77889999999999988        7666665554 23


Q ss_pred             ccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccH
Q 027136           85 TLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARV  164 (227)
Q Consensus        85 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  164 (227)
                      ........+.++.+.+.........+.|...+.+ ++.++..|.|||++++..+..++++.++..+.+++ ..+..|.||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~~d~~g~Tp  159 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQDDKDETP  159 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeecccccccc-ccccccccc
Confidence            3444556678899999999999999999999998 68899999999999999999999999999999999 999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCCC
Q 027136          165 LLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPY  207 (227)
Q Consensus       165 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  207 (227)
                      ||.|+..|+.++++.|++. +++.+.+|..|+||||+|+++++
T Consensus       160 L~~A~~~g~~~~v~~Ll~~-gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchhccccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999999977 55678999999999999999543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-27  Score=176.21  Aligned_cols=170  Identities=15%  Similarity=0.068  Sum_probs=147.6

Q ss_pred             CCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc-
Q 027136            5 DDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP-   83 (227)
Q Consensus         5 ~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~-   83 (227)
                      +...+.++..|.||||+|+..|+.++++.|++.+. .++.+ +..|.|||++++..++.        ++++.|+..+.. 
T Consensus        29 ~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~-d~~~~-d~~g~t~l~~~~~~~~~--------~~~~~l~~~~~~~   98 (221)
T d1iknd_          29 LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-DPELR-DFRGNTPLHLACEQGCL--------ASVGVLTQSCTTP   98 (221)
T ss_dssp             CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-CSCCC-CTTCCCHHHHHHHHTCH--------HHHHHHHHSTTTT
T ss_pred             CCCcccCCCCCCccccccccccccccccccccccc-ccccc-ccccccccccccccccc--------cccchhhhhcccc
Confidence            34456677889999999999999999999998886 45456 88999999999999999        999999987511 


Q ss_pred             ---cccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCC
Q 027136           84 ---QTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGND  160 (227)
Q Consensus        84 ---~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  160 (227)
                         .........|.||||.|+..++.+++++|+..+.......+.+|.||||+|+..|+.+++++|+++|++++ .++..
T Consensus        99 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~-~~~~~  177 (221)
T d1iknd_          99 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQ  177 (221)
T ss_dssp             SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTT
T ss_pred             cccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc-ccCCC
Confidence               22334455689999999999999999999999988544556789999999999999999999999999999 99999


Q ss_pred             CccHHHHHHHhCcHHHHHHHHHhCC
Q 027136          161 GARVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       161 g~t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      |+||||+|+..++.+++++|++...
T Consensus       178 G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         178 GYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             CCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            9999999999999999999997643

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.7e-27  Score=163.15  Aligned_cols=142  Identities=21%  Similarity=0.153  Sum_probs=134.9

Q ss_pred             cHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHH
Q 027136           52 STIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPI  131 (227)
Q Consensus        52 t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  131 (227)
                      ++||+|+..|+.        +++++|++.+  ++++.+|..|.||||+|+ .++.+++++|++++++ ++..+..+.+|+
T Consensus         3 ~~Lh~Aa~~g~~--------~~v~~Ll~~g--~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l   70 (156)
T d1ihba_           3 NELASAAARGDL--------EQLTSLLQNN--VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVI   70 (156)
T ss_dssp             HHHHHHHHHTCH--------HHHHHHTTSC--CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             HHHHHHHHcCCH--------HHHHHHHHCC--CCcCccCCcccccccccc-cccccccccccccccc-cccccccCcccc
Confidence            799999999999        9999999999  889999999999999875 7899999999999999 789999999999


Q ss_pred             HHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          132 HEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       132 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +.++..+..+.++.|+..+.+++ ..+..|.+|+|+|+..++.+++++|+++++.+...+|..|.||||+|+.++
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          71 HDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcC
Confidence            99999999999999999999998 899999999999999999999999999988788899999999999999843

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=8.9e-27  Score=177.70  Aligned_cols=168  Identities=16%  Similarity=0.082  Sum_probs=140.4

Q ss_pred             CCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC--
Q 027136            4 SDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV--   81 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~--   81 (227)
                      .|.+.+..+..|.||||+|+..|+.++++.|++.+. .++.+ +..|.|||++|+..++.        +++.++....  
T Consensus        63 ~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga-d~n~~-~~~g~t~l~~a~~~~~~--------~~~~~l~~~~~~  132 (277)
T d2fo1e1          63 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-DPTIY-NKSERSALHQAAANRDF--------GMMVYMLNSTKL  132 (277)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSCCC-CTTCCCHHHHHHHTTCH--------HHHHHHTTSHHH
T ss_pred             cCCCccccCCCCCeeecccccccccccccccccccc-ccccc-cccccccccchhhhcch--------hhhhhhhhcccc
Confidence            345556778899999999999999999999999986 45566 88899999999999987        5554443321  


Q ss_pred             -------------------------------------C------ccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 027136           82 -------------------------------------D------PQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPN  118 (227)
Q Consensus        82 -------------------------------------~------~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  118 (227)
                                                           .      ....+..+..|.||||+++..++.+++++++.....
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~  212 (277)
T d2fo1e1         133 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS  212 (277)
T ss_dssp             HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC
T ss_pred             cccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccc
Confidence                                                 0      011234556789999999999999999987766544


Q ss_pred             ccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHH
Q 027136          119 LTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLK  182 (227)
Q Consensus       119 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  182 (227)
                      ..+.+|..|.||||+|+..|+.+++++|++.|++++ .++.+|+||||+|+..|+.+++++|++
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin-~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-AVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            478899999999999999999999999999999999 999999999999999999999998873

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3e-26  Score=170.32  Aligned_cols=174  Identities=14%  Similarity=0.062  Sum_probs=140.9

Q ss_pred             CcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCccc-ccccCCCCccHHHHHHHhcCccccch----------------
Q 027136            6 DQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDAL-TAKTVAPGSSTIFHAIVELLVDVESD----------------   68 (227)
Q Consensus         6 ~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~----------------   68 (227)
                      ...+..+.+|.||||+|+..|+.++++.|++.+.... ....+..|.+|+|+++..+..+....                
T Consensus        25 ~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d1ixva_          25 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ  104 (229)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTT
T ss_pred             CcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445667889999999999999999999999865321 11225556667766666555432100                


Q ss_pred             -----------hHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHc
Q 027136           69 -----------EATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYK  137 (227)
Q Consensus        69 -----------~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  137 (227)
                                 ...+++++|++.+  ......+..|+||||+|+..++.++++.|++.+...++.+|..|+||||+|+..
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENG--ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccchhhhhhhhhhhc--ccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccc
Confidence                       0347788888888  777888999999999999999999999999998655789999999999999999


Q ss_pred             CChHHHHHHHh-hcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCC
Q 027136          138 GHKNTFQYLLE-VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHP  185 (227)
Q Consensus       138 ~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  185 (227)
                      |+.+++++|++ .|++++ .++..|+||||+|+.   .+++++|++++.
T Consensus       183 ~~~~~v~~Ll~~~gad~~-~~d~~g~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         183 GHGDAAVLLVEKYGAEYD-LVDNKGAKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             TCHHHHHHHHHHHCCCSC-CCCTTSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred             ccHHHHHHHHHhcCCCCC-CcCCCCCCHHHHHhh---HHHHHHHHHcCC
Confidence            99999999996 599999 999999999999984   579999998844

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-25  Score=157.34  Aligned_cols=141  Identities=20%  Similarity=0.121  Sum_probs=129.0

Q ss_pred             cHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHH
Q 027136           52 STIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPI  131 (227)
Q Consensus        52 t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  131 (227)
                      ..|+.|+..|+.        +++++|++.+ +.+++..|..|.||||+|+. ++.+++++|++.+.+ ++..+..|.+|+
T Consensus         4 ~~L~~Aa~~g~~--------~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~-~~~~~~~~~~~l   72 (156)
T d1bd8a_           4 DRLSGAAARGDV--------QEVRRLLHRE-LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS-PNVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHHHTCH--------HHHHHHHHTT-CCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             HHHHHHHHcCCH--------HHHHHHHHhC-CCCCCccCCCCCcccccccc-ccccccccccccccc-cccccccccccc
Confidence            459999999999        9999999875 37899999999999998864 889999999999999 788999999999


Q ss_pred             HHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCC
Q 027136          132 HEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKP  206 (227)
Q Consensus       132 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  206 (227)
                      +.++..++.++++++++.+++++ .++..|.||||+|+..|+.+++++|+ . +.+.+.+|..|+||||+|+.++
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~-~-~~~~~~~d~~G~TpL~~A~~~g  144 (156)
T d1bd8a_          73 HDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLA-A-ESDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHH-T-TSCTTCCCTTSCCHHHHHHHSC
T ss_pred             ccccccccccccccccccccccc-cccCCCCeeecccccccccccccccc-c-cccccccCCCCCCHHHHHHHcC
Confidence            99999999999999999999999 89999999999999999999999887 4 4566799999999999999944

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=156.31  Aligned_cols=120  Identities=18%  Similarity=0.113  Sum_probs=112.2

Q ss_pred             CccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCC-
Q 027136           50 GSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDT-  128 (227)
Q Consensus        50 g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-  128 (227)
                      +.++||+|+..|+.        +++++|++.+  ++++.++..|.||+|+|+ .|+.+++++|++++++ ++.++..+. 
T Consensus         3 ~~~~L~~Aa~~G~~--------~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~   70 (125)
T d1bi7b_           3 SADWLATAAARGRV--------EEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLT   70 (125)
T ss_dssp             STTHHHHHHHHTCH--------HHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCC
T ss_pred             ChhHHHHHHHCCCH--------HHHHHHHHcC--Cccccccccccccccccc-cccccccccccccccc-cccccccccc
Confidence            46899999999999        9999999999  899999999999999775 6999999999999999 688888776 


Q ss_pred             hHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHH
Q 027136          129 LPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLK  182 (227)
Q Consensus       129 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  182 (227)
                      ||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++
T Consensus        71 ~~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          71 RPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccc-cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            69999999999999999999999999 999999999999999999999999874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-25  Score=169.64  Aligned_cols=134  Identities=22%  Similarity=0.197  Sum_probs=117.1

Q ss_pred             CCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHh----cCCHHHHHHHHHcCCCccccC
Q 027136           48 APGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAG----KGNLRALKVLVKCNPNLTNIR  123 (227)
Q Consensus        48 ~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~----~~~~~~~~~Ll~~~~~~~~~~  123 (227)
                      ..|.||||+|+..|+.        +++++|++.. +.+++..+..+.+++..+..    .+..+++++|++++++ ++.+
T Consensus       146 ~~g~t~L~~A~~~~~~--------~~~~~Ll~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~  215 (285)
T d1wdya_         146 KGGATALMDAAEKGHV--------EVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVR  215 (285)
T ss_dssp             CCCCCHHHHHHHHTCH--------HHHHHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCC
T ss_pred             ccCchHHHHHHHcCCH--------HHHHHHHhcc-CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCcc
Confidence            5578999999999999        9999999764 37888999989888776653    3345799999999999 7899


Q ss_pred             CCCCChHHHHHHHcCChHHHHHHHh-hcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCcccccc
Q 027136          124 GGLDTLPIHEAAYKGHKNTFQYLLE-VTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSID  193 (227)
Q Consensus       124 ~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  193 (227)
                      +..|.||||+|+..|+.+++++|++ .|++++ .++.+|.||||+|+..|+.+++++||+. |++.+.+|.
T Consensus       216 ~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din-~~d~~G~TpL~~A~~~~~~eiv~~Ll~~-GAd~n~~d~  284 (285)
T d1wdya_         216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             CCCCCCccchhhhcCcHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcccC
Confidence            9999999999999999999999997 588999 9999999999999999999999999987 666667663

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.5e-25  Score=155.38  Aligned_cols=143  Identities=19%  Similarity=0.161  Sum_probs=131.6

Q ss_pred             ccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChH
Q 027136           51 SSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLP  130 (227)
Q Consensus        51 ~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  130 (227)
                      .|||+.|++.|+.        +++++|++.+  ++++ .+..|.||||+|+..++.++++.++..... ....+..+.++
T Consensus         3 ~t~L~~Aa~~g~~--------~~v~~LL~~g--a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   70 (153)
T d1awcb_           3 GKKLLEAARAGQD--------DEVRILMANG--APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTP   70 (153)
T ss_dssp             HHHHHHHHHHTCH--------HHHHHHHHHT--CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCH
T ss_pred             CHHHHHHHHCCCH--------HHHHHHHHcC--CCcc-cccCCCcccccccccccccccccccccccc-ccccccccccc
Confidence            4899999999999        9999999999  6665 688999999999999999999999999887 57778889999


Q ss_pred             HHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHhhCCC
Q 027136          131 IHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLAQKPY  207 (227)
Q Consensus       131 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  207 (227)
                      ++.++...+.+.++++...+.+.+ .++..|+||||+|+..|+.+++++|++. +.+.+.+|..|.||||+|+.+++
T Consensus        71 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~-gad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          71 LHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeecccc-ccCCcccCCCCCCHHHHHHHcCC
Confidence            999999999999999999999998 9999999999999999999999999977 66678999999999999999654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=7.1e-26  Score=174.07  Aligned_cols=157  Identities=18%  Similarity=0.139  Sum_probs=134.7

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV   81 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~   81 (227)
                      ++.|.+.+..+..|.||||+|+..|+.++++.|++.+.. .... +..+.+||+.++..++.        ++++.|++.+
T Consensus        60 l~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~-~~~~~~~L~~a~~~~~~--------~~~~~l~~~~  129 (291)
T d1s70b_          60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQP-DNEGWIPLHAAASCGYL--------DIAEYLISQG  129 (291)
T ss_dssp             HHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHTT
T ss_pred             HHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-cccc-ccccccccccccccccc--------chhhcccccC
Confidence            344555667788899999999999999999999999864 3234 67789999999999999        8888887665


Q ss_pred             Cccc----------------------------------------------------------cccCCCCCCcHHHHHHhc
Q 027136           82 DPQT----------------------------------------------------------LARQDEHGYTALFLCAGK  103 (227)
Q Consensus        82 ~~~~----------------------------------------------------------~~~~~~~~~t~L~~a~~~  103 (227)
                      ...+                                                          ....+..|.||||.|+..
T Consensus       130 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~  209 (291)
T d1s70b_         130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (291)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             cccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHc
Confidence            1110                                                          223556788999999999


Q ss_pred             CCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHH
Q 027136          104 GNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIA  170 (227)
Q Consensus       104 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~  170 (227)
                      |+.++++.|++.+++ ++.++..|.||||+|+..|+.+++++|+++|++++ .++..|+||||+|+.
T Consensus       210 ~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~-~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         210 GYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-AVNKVGQTAFDVADE  274 (291)
T ss_dssp             TCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTTTSCCS
T ss_pred             CChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH
Confidence            999999999999999 79999999999999999999999999999999999 999999999999975

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.3e-26  Score=174.94  Aligned_cols=143  Identities=11%  Similarity=0.046  Sum_probs=108.7

Q ss_pred             ccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCH-------HHHHHHHHcCC
Q 027136           45 KTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNL-------RALKVLVKCNP  117 (227)
Q Consensus        45 ~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~-------~~~~~Ll~~~~  117 (227)
                      ..|..|+||||+|+..|+.        +++++|++.+  ++++.+|..|+||||.|+..++.       ++++++..   
T Consensus       102 ~~D~~G~T~LH~Aa~~g~~--------~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---  168 (301)
T d1sw6a_         102 PVDEHGNTPLHWLTSIANL--------ELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---  168 (301)
T ss_dssp             CCSTTCCCHHHHHHHTTCH--------HHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---
T ss_pred             CcCCCCCCHHHHHHHcCCH--------HHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---
Confidence            3467788899999888888        8888888888  88888888888999888876542       33444322   


Q ss_pred             CccccCCCCCChHHHHHHHcCC----hH--------HHHHHHhhcCC---------------------------------
Q 027136          118 NLTNIRGGLDTLPIHEAAYKGH----KN--------TFQYLLEVTHG---------------------------------  152 (227)
Q Consensus       118 ~~~~~~~~~g~t~l~~a~~~~~----~~--------~~~~Ll~~~~~---------------------------------  152 (227)
                      . +...|..|+||||+++..+.    ..        ++.++...+..                                 
T Consensus       169 ~-~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (301)
T d1sw6a_         169 C-LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  247 (301)
T ss_dssp             G-GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             h-hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHH
Confidence            2 45677888888888775443    12        22333333322                                 


Q ss_pred             ----CccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCCccccccccccHHHHHh
Q 027136          153 ----VDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTIGRDSIDSRRIVLNKLA  203 (227)
Q Consensus       153 ----~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  203 (227)
                          ++ .+|.+|+||||+|++.|+.+++++|++. +++.+++|+.|.|||++|+
T Consensus       248 ~~~~in-~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         248 IANMLN-AQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHTTT-CCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             HhcCcc-CCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence                34 7789999999999999999999999977 6777899999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=1.4e-27  Score=188.42  Aligned_cols=186  Identities=16%  Similarity=0.061  Sum_probs=141.5

Q ss_pred             hhhhcccHHHHHHHHhCCHHHHHH---HHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCcccc
Q 027136           10 DEYYVRYWPLYRMIEKNDWRGVED---FVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTL   86 (227)
Q Consensus        10 ~~~~~~~~~L~~a~~~g~~~~v~~---ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~   86 (227)
                      .+...|.|||+.|+..|+.+.++.   |++.+. .++.+ +..|.||||+|+..|+.        +++++|++.+  +++
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~-~in~~-~~~g~taL~~Aa~~G~~--------~~v~~Ll~~g--~~~  152 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDE-IVKVI-QAENYQAFRLAAENGHL--------HVLNRLCELA--PTE  152 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS-SCC---CHHHHHHHHHHHHTTCH--------HHHHHHHHSC--TTT
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCC-ccccc-CCCCCCHHHHHHHCCCH--------HHHHHHHHcC--CCc
Confidence            344578899999999999988776   445554 56566 78899999999999999        9999999999  666


Q ss_pred             ccCC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCc--cccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCcc-------
Q 027136           87 ARQD--EHGYTALFLCAGKGNLRALKVLVKCNPNL--TNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDI-------  155 (227)
Q Consensus        87 ~~~~--~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-------  155 (227)
                      +..+  ..|.||||+|+..|+.+++++|++.++..  .+..+..+.||++.|+..|+.+++++|++.|++++.       
T Consensus       153 ~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~  232 (346)
T d2ajaa1         153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE  232 (346)
T ss_dssp             HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTT
T ss_pred             cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHH
Confidence            6554  46899999999999999999999998752  233455677888889999999999999988754220       


Q ss_pred             -------------------------ccCC----------------CCccHHHHHHHhCcHHHHHHHHHhCCC----Cccc
Q 027136          156 -------------------------YSGN----------------DGARVLLLLIAANLYDVALDLLKLHPT----IGRD  190 (227)
Q Consensus       156 -------------------------~~~~----------------~g~t~L~~a~~~~~~~~~~~Ll~~~~~----~~~~  190 (227)
                                               ....                .+.++++.|...+..+++++|++.+..    ....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~  312 (346)
T d2ajaa1         233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT  312 (346)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCS
T ss_pred             cCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhccccc
Confidence                                     0011                124677788888899999999976432    1223


Q ss_pred             cccccccHHHHHhhCCC
Q 027136          191 SIDSRRIVLNKLAQKPY  207 (227)
Q Consensus       191 ~~~~g~t~l~~a~~~~~  207 (227)
                      .+..|+||||+|++.+.
T Consensus       313 ~~~~g~T~LhlA~~~Gn  329 (346)
T d2ajaa1         313 IPGDANELLRLALRLGN  329 (346)
T ss_dssp             STTCCCHHHHHHHHHTC
T ss_pred             CCCCCCcHHHHHHHcCc
Confidence            44679999999999553

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=7.9e-27  Score=156.11  Aligned_cols=105  Identities=16%  Similarity=0.090  Sum_probs=63.2

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcH
Q 027136           95 TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLY  174 (227)
Q Consensus        95 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~  174 (227)
                      |||++|++.|+.+++++|++++++ ++.++..|+||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceee-ecccccccchhhhhhcCch
Confidence            556666666666666666666655 45556666666666666666666666666666665 5556666666666666666


Q ss_pred             HHHHHHHHhCCCCccccccccccHHHHH
Q 027136          175 DVALDLLKLHPTIGRDSIDSRRIVLNKL  202 (227)
Q Consensus       175 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  202 (227)
                      +++++|++. +++.+.+|..|.||||+|
T Consensus        82 ~~v~~Ll~~-Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSK-GADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTT-CCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcc-cccceeeCCCCCCHHHHH
Confidence            666666654 344455666666666655

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.1e-25  Score=149.13  Aligned_cols=96  Identities=23%  Similarity=0.260  Sum_probs=91.6

Q ss_pred             HHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhh
Q 027136           70 ATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEV  149 (227)
Q Consensus        70 ~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  149 (227)
                      ..+++++|++.+  ++++.++..|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus        14 ~~~~v~~Ll~~g--~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~~~~v~~Ll~~   90 (118)
T d1myoa_          14 DLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSK   90 (118)
T ss_dssp             CHHHHHHHHTTT--CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTCCHHHHHHHTT
T ss_pred             CHHHHHHHHHhh--hccccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCchhhhhhhhcc
Confidence            358999999999  88999999999999999999999999999999999 799999999999999999999999999999


Q ss_pred             cCCCccccCCCCccHHHHHH
Q 027136          150 THGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus       150 ~~~~~~~~~~~g~t~L~~a~  169 (227)
                      |++++ .++..|+||||+|.
T Consensus        91 Gad~~-~~d~~G~t~l~~a~  109 (118)
T d1myoa_          91 GADKT-VKGPDGLTALEATD  109 (118)
T ss_dssp             CCCSS-SSSSSTCCCCCTCS
T ss_pred             cccce-eeCCCCCCHHHHHh
Confidence            99999 99999999999884

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.1e-25  Score=148.68  Aligned_cols=120  Identities=18%  Similarity=0.162  Sum_probs=109.7

Q ss_pred             cHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHH
Q 027136           52 STIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPI  131 (227)
Q Consensus        52 t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l  131 (227)
                      ++|+.|+..|+.        +++++|++.+  ++++.+|..|.||||+|+..++.+++++|++.+++ ++.+|..|+|||
T Consensus         3 ~lL~~A~~~G~~--------~~v~~Ll~~g--~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpL   71 (130)
T d1ycsb1           3 ALLLDSSLEGEF--------DLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPL   71 (130)
T ss_dssp             HHHHHHHHHTCH--------HHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHH
T ss_pred             HHHHHHHHcCCH--------HHHHHHHHcC--CCccccccccccccccccccccccccccccccccc-cccccccCcccc
Confidence            679999999999        9999999999  89999999999999999999999999999999998 799999999999


Q ss_pred             HHHHHcCChHHHHHHHhhcCCCccccC-CCCccHHHHH--HHhCcHHHHHHHHHh
Q 027136          132 HEAAYKGHKNTFQYLLEVTHGVDIYSG-NDGARVLLLL--IAANLYDVALDLLKL  183 (227)
Q Consensus       132 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~a--~~~~~~~~~~~Ll~~  183 (227)
                      |+|+..|+.+++++|++.|++++ ..+ ..++||++++  ...|+.+++++|+..
T Consensus        72 h~A~~~g~~~~v~~Ll~~ga~v~-~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          72 HCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999999999999988 544 5688887765  567889999999864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.4e-25  Score=147.90  Aligned_cols=120  Identities=18%  Similarity=0.133  Sum_probs=109.3

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCC
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGY   94 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   94 (227)
                      +.++||.|+..|+.++++.|++.+. .++.+ +..|.||+|+|+ .|+.        +++++|++.+  ++++.++..+.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~ga-d~n~~-~~~g~t~l~~a~-~g~~--------~~v~~Ll~~g--a~~~~~~~~~~   69 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGA-NPNAP-NSYGRRPIQVMM-MGSA--------RVAELLLLHG--AEPNCADPATL   69 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTC-CTTCC-CSSSCCTTTSSC-TTCH--------HHHHHHHTTT--CCCCCCCTTTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCC-ccccc-cccccccccccc-cccc--------cccccccccc--ccccccccccc
Confidence            5689999999999999999999875 45566 889999999775 7899        9999999999  88998888765


Q ss_pred             -cHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHh
Q 027136           95 -TALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLE  148 (227)
Q Consensus        95 -t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  148 (227)
                       +|||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+.
T Consensus        70 ~~~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          70 TRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence             699999999999999999999999 79999999999999999999999999975

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.9e-24  Score=164.38  Aligned_cols=149  Identities=18%  Similarity=0.075  Sum_probs=112.9

Q ss_pred             hhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCC
Q 027136           12 YYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDE   91 (227)
Q Consensus        12 ~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~   91 (227)
                      +..|.||||+|+..|+.++++.|++.+. .++.+ +..|.||||.|+..++. .......++++++.     ..+...|.
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga-d~~~~-d~~G~TpL~~A~~~~~~-~~~~~~~~ll~~l~-----~~~~~~d~  175 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGS-NRLYG-DNMGESCLVKAVKSVNN-YDSGTFEALLDYLY-----PCLILEDS  175 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTBC-CTTCCCHHHHHHHSSHH-HHTTCHHHHHHHHG-----GGGGEECT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCcC-CcccccHHHHhhhcccc-hhhhhHHHHHHHHh-----hhhhhccc
Confidence            4569999999999999999999999986 55566 88999999999987641 00000113444443     33556788


Q ss_pred             CCCcHHHHHHhcCC----HHH--------HHHHHHcCCCc------------------------------------cccC
Q 027136           92 HGYTALFLCAGKGN----LRA--------LKVLVKCNPNL------------------------------------TNIR  123 (227)
Q Consensus        92 ~~~t~L~~a~~~~~----~~~--------~~~Ll~~~~~~------------------------------------~~~~  123 (227)
                      .|+||||+++..+.    ...        +.+++..+...                                    ++.+
T Consensus       176 ~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~  255 (301)
T d1sw6a_         176 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ  255 (301)
T ss_dssp             TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCC
T ss_pred             ccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCC
Confidence            89999998875432    222        33333332210                                    3678


Q ss_pred             CCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHH
Q 027136          124 GGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLI  169 (227)
Q Consensus       124 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  169 (227)
                      |..|+||||+|++.|+.+++++|++.|++++ .++..|.|||++|+
T Consensus       256 D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~-~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIVDALLDYGADPF-IANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT-CCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHcC
Confidence            9999999999999999999999999999999 99999999999885

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=142.86  Aligned_cols=122  Identities=15%  Similarity=0.117  Sum_probs=108.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCccccccCCCCCCcH
Q 027136           17 WPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDPQTLARQDEHGYTA   96 (227)
Q Consensus        17 ~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~t~   96 (227)
                      ++|+.|+..|+.++++.|++++. +++.+ +.+|.||||+|+..++.        +++++|++.+  .+++.+|..|+||
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~-d~n~~-d~~g~t~Lh~A~~~~~~--------~~~~~ll~~g--~~~~~~d~~g~tp   70 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVD-DPSLP-NDEGITALHNAVCAGHT--------EIVKFLVQFG--VNVNAADSDGWTP   70 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTS-SCCCC-CTTSCCHHHHHHHHTCH--------HHHHHHHHHT--CCTTCCCTTCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC-Ccccc-ccccccccccccccccc--------cccccccccc--cccccccccCccc
Confidence            68999999999999999999886 56666 88999999999999999        9999999999  8899999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCccccCC-CCCChHHHHH--HHcCChHHHHHHHhhcC
Q 027136           97 LFLCAGKGNLRALKVLVKCNPNLTNIRG-GLDTLPIHEA--AYKGHKNTFQYLLEVTH  151 (227)
Q Consensus        97 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~~  151 (227)
                      ||+|+..|+.+++++|++++++ ++..+ ..+.||++++  ...|+.+++++|+..+.
T Consensus        71 Lh~A~~~g~~~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          71 LHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            9999999999999999999998 56554 4588887665  56788999999997653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.4e-22  Score=148.09  Aligned_cols=165  Identities=16%  Similarity=0.177  Sum_probs=145.3

Q ss_pred             CCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCC
Q 027136            3 NSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVD   82 (227)
Q Consensus         3 ~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~   82 (227)
                      ..+...+..+..+.++++.++..++.................. ...|.++.+.+......        ...+.|...+ 
T Consensus        44 ~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~L~~~~-  113 (209)
T d1ot8a_          44 DAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNAR-MHDGTTPLILAARLAIE--------GMVEDLITAD-  113 (209)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTCCCHHHHHHHTTCT--------THHHHHHHTT-
T ss_pred             hhccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccch--------hhhhhhhhhc-
Confidence            3444555667788999999999999988777766654333233 66788999999999999        8999999998 


Q ss_pred             ccccccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCc
Q 027136           83 PQTLARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGA  162 (227)
Q Consensus        83 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  162 (227)
                       .+++.++..|.|||+.++..+..++++.++..+.+ ++..|..|.||||+|+..|+.+++++|++.|++++ .++..|+
T Consensus       114 -~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n-~~d~~g~  190 (209)
T d1ot8a_         114 -ADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFANRE-ITDHMDR  190 (209)
T ss_dssp             -CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             -ccccccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHCCCCCC-CcCCCCC
Confidence             88888999999999999999999999999999998 68999999999999999999999999999999999 9999999


Q ss_pred             cHHHHHHHhCcHHHHHHH
Q 027136          163 RVLLLLIAANLYDVALDL  180 (227)
Q Consensus       163 t~L~~a~~~~~~~~~~~L  180 (227)
                      ||||+|+..|+.+++++|
T Consensus       191 Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         191 LPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHhhc
Confidence            999999999999999975

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=8.1e-23  Score=142.37  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=106.6

Q ss_pred             HHHHHHHhcCccccchhHHHHHHHHHhcCCccccc------cCCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCccccC
Q 027136           53 TIFHAIVELLVDVESDEATCLLDKLASKVDPQTLA------RQDEHGYTALFLCAGK---GNLRALKVLVKCNPNLTNIR  123 (227)
Q Consensus        53 ~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~~~~~------~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~  123 (227)
                      .|+.|++.+..        ..+..++..+  .++.      ..+..|.||||+|+..   +..+++++|++++++ ++.+
T Consensus         9 ~L~~Av~~~dl--------~~l~~~~~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~   77 (154)
T d1dcqa1           9 SLCEAVKTRDI--------FGLLQAYADG--VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQ   77 (154)
T ss_dssp             HHHHHHHTTCH--------HHHHHHHHTT--CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCC
T ss_pred             HHHHHHHhCCH--------HHHHHHHHcC--CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhh
Confidence            34567788888        7777777776  4433      2366789999999964   678999999999999 7999


Q ss_pred             CCCCChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHHHHHHhCCCC
Q 027136          124 GGLDTLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVALDLLKLHPTI  187 (227)
Q Consensus       124 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~  187 (227)
                      |..|.||||+|+..|+.+++++|++.|++++ .++..|+||||+|+..|+.+++++|++.....
T Consensus        78 d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          78 TGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             hhhhccccccccccccccccccccccCcccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999 99999999999999999999999999874433

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.2e-22  Score=141.56  Aligned_cols=128  Identities=20%  Similarity=0.273  Sum_probs=111.3

Q ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCccc----ccccCCCCccHHHHHHHh---cCccccchhHHHHHHHHHhcCCccccc
Q 027136           15 RYWPLYRMIEKNDWRGVEDFVTNHPDAL----TAKTVAPGSSTIFHAIVE---LLVDVESDEATCLLDKLASKVDPQTLA   87 (227)
Q Consensus        15 ~~~~L~~a~~~g~~~~v~~ll~~~~~~~----~~~~~~~g~t~L~~a~~~---~~~~~~~~~~~~~~~~Ll~~~~~~~~~   87 (227)
                      ....|+.|++.+++..+..++..+.+..    ....+..|.||||+|+..   +..        +++++|++.+  ++++
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~--------~iv~~Ll~~g--adin   75 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL--------HIVDFLVQNS--GNLD   75 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTH--------HHHHHHHHHC--SCTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCH--------HHHHHHHHcC--CChh
Confidence            4456789999999999999988764321    111256789999999986   455        8999999999  8999


Q ss_pred             cCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCCChHHHHHHHcCChHHHHHHHhhcCCC
Q 027136           88 RQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLDTLPIHEAAYKGHKNTFQYLLEVTHGV  153 (227)
Q Consensus        88 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  153 (227)
                      .+|..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+...
T Consensus        76 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          76 KQTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             hhhhhhccccccccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999 6999999999999999999999999999987653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-23  Score=152.33  Aligned_cols=163  Identities=15%  Similarity=0.085  Sum_probs=134.3

Q ss_pred             CCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcCCc
Q 027136            4 SDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKVDP   83 (227)
Q Consensus         4 ~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~~~   83 (227)
                      .+...+..+..|.||||+|+..|+.++++.|++.+.. .+.. ...|.++++.|...++.        ++++.+.....+
T Consensus        29 ~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~-~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~   98 (228)
T d1k1aa_          29 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMAL-DRHGQTAAHLACEHRSP--------TCLRALLDSAAP   98 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCC-CTTSCCHHHHHHHTTCH--------HHHHHHHHHSCT
T ss_pred             CCCCCCccCCCCCccceehhccccccccccccccccc-cccc-ccccccccccccccccc--------cchhhhhhcccc
Confidence            4445567778899999999999999999999998763 3334 66778888888887777        544444332200


Q ss_pred             -----------------------------------cc-cccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCccccCCCCC
Q 027136           84 -----------------------------------QT-LARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLTNIRGGLD  127 (227)
Q Consensus        84 -----------------------------------~~-~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  127 (227)
                                                         .. .......+.++++.|+..+...+++.++..+.. .+.++..|
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g  177 (228)
T d1k1aa_          99 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSG  177 (228)
T ss_dssp             TSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTS
T ss_pred             ccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccC
Confidence                                               11 223455788999999999999999999999988 68899999


Q ss_pred             ChHHHHHHHcCChHHHHHHHhhcCCCccccCCCCccHHHHHHHhCcHHHHH
Q 027136          128 TLPIHEAAYKGHKNTFQYLLEVTHGVDIYSGNDGARVLLLLIAANLYDVAL  178 (227)
Q Consensus       128 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  178 (227)
                      .||||+|+..|+.+++++|++.|++++ .++.+|+||||+|++.|+.++++
T Consensus       178 ~t~L~~A~~~g~~~~v~~Ll~~Gad~n-~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         178 SSALHSASGRGLLPLVRTLVRSGADSS-LKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999 99999999999999999988874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=5.3e-25  Score=173.46  Aligned_cols=172  Identities=15%  Similarity=0.125  Sum_probs=128.9

Q ss_pred             CCCCCcCchhhhcccHHHHHHHHhCCHHHHHHHHHcCCcccccccCCCCccHHHHHHHhcCccccchhHHHHHHHHHhcC
Q 027136            2 INSDDQGEDEYYVRYWPLYRMIEKNDWRGVEDFVTNHPDALTAKTVAPGSSTIFHAIVELLVDVESDEATCLLDKLASKV   81 (227)
Q Consensus         2 ~~~~~~~~~~~~~~~~~L~~a~~~g~~~~v~~ll~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~Ll~~~   81 (227)
                      +..+...+..+..|+||||+|++.|+.++|+.|++.++.......+..|.||||+|+..|+.        +++++|++.+
T Consensus       113 ~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~--------~iv~~Ll~~~  184 (346)
T d2ajaa1         113 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL--------HVLNRLCELA  184 (346)
T ss_dssp             --CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCH--------HHHHHHHHSC
T ss_pred             HhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhH--------HHHHHHHHcC
Confidence            45566667778899999999999999999999999987432111134689999999999999        9999999998


Q ss_pred             Ccccc---ccCCCCCCcHHHHHHhcCCHHHHHHHHHcCCCcc--------------------------------ccCCCC
Q 027136           82 DPQTL---ARQDEHGYTALFLCAGKGNLRALKVLVKCNPNLT--------------------------------NIRGGL  126 (227)
Q Consensus        82 ~~~~~---~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~--------------------------------~~~~~~  126 (227)
                        +..   +..+..+.||++.|+..|+.+++++|++.+++..                                ......
T Consensus       185 --~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  262 (346)
T d2ajaa1         185 --PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD  262 (346)
T ss_dssp             --GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSS
T ss_pred             --CcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhccc
Confidence              332   3444556788888999999999999998753210                                000111


Q ss_pred             ----------------CChHHHHHHHcCChHHHHHHHhhcCCCc----cccCCCCccHHHHHHHhCcHHHHHHHHHh
Q 027136          127 ----------------DTLPIHEAAYKGHKNTFQYLLEVTHGVD----IYSGNDGARVLLLLIAANLYDVALDLLKL  183 (227)
Q Consensus       127 ----------------g~t~l~~a~~~~~~~~~~~Ll~~~~~~~----~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  183 (227)
                                      +.++++.++..++.+++++|++.+....    ...+.+|+||||+|++.|+.+++++||+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         263 GVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             SCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             ccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                            1356677777788899999998765422    14456789999999999999999999964