Citrus Sinensis ID: 027175

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MGNVSGRQDGEGCSGVKKREYEEGFEQSLTELGHGDPMLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQPAGCLGEKREREREREREMNGADRATPYLSIAFLKASRCFDGGLTIMQPLVIR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEEcccccEEEEEEcccccccccccccccccEEEEEEccccEEEEEEEEccEEEEcccccEEEcccccEEEEEEEccccccccccHHHHHHHHHHcccccccccccHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEccccccccccEcccccEEEEEEcccccEEEEEEEcccEEEccccccEEcccccEEEEEEEEccccccccccHHHHHHccccccccccccEEEEEEEcccccccccEEcccEEEc
Coil and Loop (DISEMBL)
mgnvsgrqdgegcsgvkkreyEEGFEQSLtelghgdpmlhspphqsprafqpppiftsqvpmdplprsgdlmqVRNHAAERSMAYYEELSYEKQVAAAITWSLGGkqvavtgswdnwenvdplwrlgKDFVIMkmlpsgvyhYRFIVDEClryapdvpwecddsgnaynvldlqpagclgekrEREREREREmngadratpYLSIAFLKasrcfdggltimqplvir
Flexible Loop (DISEMBL)
mgnvsgrqdgegcsgvkkrEYEEGFEQSLTELGHGDPMLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVtgswdnwenvDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAynvldlqpagclgekrererereremngadratpylSIAFLKASRCFDGGLTIMQPLVIR
Low Complexity Region (SEG)
MGNVSGRQDGEGCSGVKKREYEEGFEQSLTELGHGDPMLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQPAGCLGEKrerererereMNGADRATPYLSIAFLKASRCFDGGLTIMQPLVIR
Disordered region (IsUnstruct)
**********************************************************************************MAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQPAGCL********************TPYLSIAFLKASRCFDGGLTIMQPLV**
Disordered Region (DISOPRED)
**********************************************************************************************VAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQP******************************************LTIMQPLV**
Disordered Region (DISEMBL)
**************GVKKREYEEGFEQSLTELGHGDPMLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQPAGCLGE**************ADRATPYLSIAFLKASRCFDGGLTIMQPLVIR
Disordered Region (DISPRO)
*******************************************************************************************EKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQPA**********************ATPYLSIAFLKASRCFDGGLTIMQPLVIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNVSGRQDGEGCSGVKKREYEEGFEQSLTELGHGDPMLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQPAGCLGEKREREREREREMNGADRATPYLSIAFLKASRCFDGGLTIMQPLVIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q9SCY5	289	SNF1-related protein kina	yes	no	0.762	0.598	0.439	1e-33
Q84VQ1	283	SNF1-related protein kina	no	no	0.519	0.416	0.408	5e-19
O43741	272	5'-AMP-activated protein	yes	no	0.343	0.286	0.346	1e-07
Q9QZH4	271	5'-AMP-activated protein	yes	no	0.343	0.287	0.346	1e-07
Q6PAM0	271	5'-AMP-activated protein	yes	no	0.343	0.287	0.346	1e-07
Q5BIS9	270	5'-AMP-activated protein	no	no	0.475	0.4	0.282	8e-07
P80386	270	5'-AMP-activated protein	no	no	0.475	0.4	0.273	1e-06
Q9Y478	270	5'-AMP-activated protein	no	no	0.475	0.4	0.273	1e-06
Q5R801	270	5'-AMP-activated protein	yes	no	0.475	0.4	0.273	1e-06
P80387	122	5'-AMP-activated protein	no	no	0.475	0.885	0.273	2e-06

>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 9/182 (4%)

Query: 1   MGNVSGRQDGE--GCSGVKKREYEEGFEQSLTELGHGDP------MLHSPPHQSPRAFQP 52
           MGNV+ R++      S V+  + E    ++++    G+       M  SPPH SPRA Q 
Sbjct: 1   MGNVNAREEANSNNASAVEDEDAEICSREAMSAASDGNHVAPPELMGQSPPH-SPRATQS 59

Query: 53  PPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTG 112
           P +F  QVP+ PL R  ++        +   + YEE S E+ +   ITW  GGK++AV G
Sbjct: 60  PLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEG 119

Query: 113 SWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLD 172
           SWDNW+    L R GKDF IMK+LPSGVY YRFIVD   R+AP++P   DD+GN +N+LD
Sbjct: 120 SWDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILD 179

Query: 173 LQ 174
           LQ
Sbjct: 180 LQ 181

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 55  IFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSW 114
           +F  QVP+ PL R+ +     N    +S   ++    E+ +   ITW+ GG  VAV GSW
Sbjct: 62  LFAPQVPVAPLQRA-NAPPPNNIQWNQSQRVFDNPP-EQGIPTIITWNQGGNDVAVEGSW 119

Query: 115 DNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
           DNW +   L + GKD  I+ +LPSG+YHY+ IVD   +Y PD+P+  D+ GN  N+LD+ 
Sbjct: 120 DNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVH 179

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 97  AAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPD 156
             I WS GGK+V ++GS++NW    PL +   DFV +  LP G + Y+F VD    + P 
Sbjct: 79  TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 138

Query: 157 VPWECDDSGNAYNVLDLQ 174
            P      G   N++ ++
Sbjct: 139 EPVVTSQLGTINNLIHVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 97  AAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPD 156
             I WS GGK+V ++GS++NW    PL +   DFV +  LP G + Y+F VD    + P 
Sbjct: 78  TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 137

Query: 157 VPWECDDSGNAYNVLDLQ 174
            P      G   N++ ++
Sbjct: 138 EPVVTSQLGTINNLIHVK 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%)

Query: 97  AAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPD 156
             I WS GGK+V ++GS++NW    PL +   DFV +  LP G + Y+F VD    + P 
Sbjct: 78  TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 137

Query: 157 VPWECDDSGNAYNVLDLQ 174
            P      G   N++ ++
Sbjct: 138 EPVVTSQLGTINNLIHVK 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 66  PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
           P   DL    +++    E  +A+  +L    +  A        W+ GGK+V ++GS++NW
Sbjct: 41  PEDADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100

Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
             + PL R   +FV +  LP G + Y+F VD    + P  P      G   NV+ ++
Sbjct: 101 SKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Bos taurus (taxid: 9913)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 66  PRSGDLMQVRNHAA---ERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
           P   D+       A   E  +A+  +L   ++  A        W+ GGK+V ++GS++NW
Sbjct: 41  PEDADIFHTEEMKAPEKEEFLAWQHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100

Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
             + PL R   +FV +  LP G + Y+F VD    + P  P      G   N++ ++
Sbjct: 101 SKL-PLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 66  PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
           P   DL    +++    E  +A+  +L    +  A        W+ GGK+V ++GS++NW
Sbjct: 41  PEDADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100

Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
             + PL R   +FV +  LP G + Y+F VD    + P  P      G   N++ ++
Sbjct: 101 SKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 66  PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
           P   DL    +++    E  +A+  +L    +  A        W+ GGK+V ++GS++NW
Sbjct: 41  PEDADLFHSEEIKAPEKEEFLAWQRDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW 100

Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
             + PL R   +FV +  LP G + Y+F VD    + P  P      G   N++ ++
Sbjct: 101 SKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVK 156

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 66  PRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGSWDNW 117
           P   DL    +++    E  +A+  +L    + +A        W+ GGK+V ++GS++NW
Sbjct: 6   PEDADLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNW 65

Query: 118 ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
             + PL R   +FV +  LP G + Y+F+VD    + P  P      G   N++ ++
Sbjct: 66  SKL-PLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQVK 121

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
255578703	283	snf1-kinase beta subunit, plants, putati	0.731	0.586	0.526	9e-44
224131874	269	predicted protein [Populus trichocarpa]	0.665	0.561	0.549	9e-43
449434042	297	PREDICTED: SNF1-related protein kinase r	0.757	0.579	0.507	1e-38
359496111	301	PREDICTED: SNF1-related protein kinase r	0.757	0.571	0.461	1e-36
224086343	293	predicted protein [Populus trichocarpa]	0.757	0.587	0.475	1e-36
297735878	263	unnamed protein product [Vitis vinifera]	0.616	0.532	0.556	1e-35
224137216	261	predicted protein [Populus trichocarpa]	0.594	0.517	0.583	2e-35
387600862	284	Tau1 [Solanum lycopersicum]	0.753	0.602	0.486	1e-34
356532768	303	PREDICTED: SNF1-related protein kinase r	0.762	0.570	0.469	6e-34
255563760	307	snf1-kinase beta subunit, plants, putati	0.594	0.439	0.554	7e-34

>gi|255578703|ref|XP_002530210.1| snf1-kinase beta subunit, plants, putative [Ricinus communis] gi|223530257|gb|EEF32157.1| snf1-kinase beta subunit, plants, putative [Ricinus communis]

 Score =  182 bits (462), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 98/186 (52%), Positives = 119/186 (63%), Gaps = 20/186 (10%)

Query: 1   MGNVSGRQDGEGCSGVKKREYEEGFEQSLTELGHG---------DPMLHSPPHQSPRA-- 49
           MGN SG+ DGEG +G       EG+EQ   E             +PM+HS P  SPR   
Sbjct: 1   MGNASGKNDGEGSTG-------EGYEQEGMEFAAAHDRGVYIGAEPMVHSAP-LSPRTRR 52

Query: 50  -FQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQV 108
             Q P IFT QVP   LPR+ ++++V+N+A   +     +   EK  A  ITWS GGKQV
Sbjct: 53  YLQLPLIFTPQVPAIRLPRTAEMIRVQNYALAHNTVDSLDAFSEKLNAVMITWSYGGKQV 112

Query: 109 AVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAY 168
           AVTGSWDNWE  +PL + GKDF  MKMLPS V+ YRFIVDE LRYAPD+PWECD+SG AY
Sbjct: 113 AVTGSWDNWEKREPLHKSGKDFAFMKMLPSSVFRYRFIVDEHLRYAPDLPWECDESGIAY 172

Query: 169 NVLDLQ 174
           N+LD+Q
Sbjct: 173 NILDVQ 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131874|ref|XP_002321200.1| predicted protein [Populus trichocarpa] gi|222861973|gb|EEE99515.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (453), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 102/151 (67%)

Query: 24  GFEQSLTELGHGDPMLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSM 83
            +  S       +PM+HSPP       QPPP+F  QVPM PLPRSG++  V N+A   + 
Sbjct: 13  SYHHSQGVYAEAEPMVHSPPRNPVGYLQPPPLFMPQVPMAPLPRSGEMTHVPNYALVPNT 72

Query: 84  AYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHY 143
             +  +  E   A  ITWS  GKQVAVTGSWDNW   +PL R+GKDF+IMKMLP+GVYHY
Sbjct: 73  TDFRGVVPENLRAVMITWSFDGKQVAVTGSWDNWNRREPLQRMGKDFIIMKMLPAGVYHY 132

Query: 144 RFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
           RFIVDE  R+ PD+PWE D+SG AYN+LD+Q
Sbjct: 133 RFIVDENFRHVPDLPWERDESGTAYNILDVQ 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434042|ref|XP_004134805.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis sativus] gi|449479516|ref|XP_004155622.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis sativus]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/191 (50%), Positives = 122/191 (63%), Gaps = 19/191 (9%)

Query: 1   MGNVSGRQDGEGCSGVKKREYEE--GFEQSLTE---------LGH--GDP----MLHSPP 43
           MGNV+GR+D +G     + E EE  G   SL +         LG+  GDP    M HSPP
Sbjct: 1   MGNVNGREDEDGNPSGAEEEDEEVGGRRSSLPDGLSVPPDAHLGYHAGDPPAELMGHSPP 60

Query: 44  HQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSL 103
            QSPRA   P +FT QVP+ PLPR  D +   + +   + ++++E+  E+ +   ITWS 
Sbjct: 61  -QSPRAIPSPLMFTPQVPVVPLPRP-DEVHSSSQSWMHNSSWFDEVGSEQGIPTMITWSH 118

Query: 104 GGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDD 163
           GGK+VAV GSWDNW+   PL R GKDF IMK+LPSGVY YRFI D   RYAPD+PW  DD
Sbjct: 119 GGKEVAVEGSWDNWKMKIPLQRSGKDFTIMKVLPSGVYQYRFIADGQWRYAPDLPWAQDD 178

Query: 164 SGNAYNVLDLQ 174
           +GNAYN+LDLQ
Sbjct: 179 AGNAYNILDLQ 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496111|ref|XP_002270146.2| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Vitis vinifera]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 114/195 (58%), Gaps = 23/195 (11%)

Query: 1   MGNVSGRQDGEGCSGV-----------KKREYEEGFEQSLTEL----------GHGDPML 39
           MGNV+GR+DG G                        +   T L          G  + M 
Sbjct: 1   MGNVNGREDGGGSPSTVGVEEEGGGDGGGGGSGGAHQNMATRLETHVSYHPSSGSPELMG 60

Query: 40  HSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAI 99
            SPPH SPRA Q P +FT Q+P+ PL +  D M + NH+  ++ + YE++  E+ +   I
Sbjct: 61  QSPPH-SPRATQSPLMFTPQIPVIPL-QKPDEMLITNHSWMQASSGYEDMCSEQGIPTMI 118

Query: 100 TWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPW 159
           TWS GGK+VAV GSWDNW+   PL R GK+F IMK+LPSGVY YRFIVD   RY PD+PW
Sbjct: 119 TWSYGGKEVAVEGSWDNWKIRKPLQRSGKEFTIMKVLPSGVYQYRFIVDGQWRYIPDMPW 178

Query: 160 ECDDSGNAYNVLDLQ 174
             DD+GNAYN+LDLQ
Sbjct: 179 AQDDAGNAYNILDLQ 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086343|ref|XP_002307855.1| predicted protein [Populus trichocarpa] gi|222853831|gb|EEE91378.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/187 (47%), Positives = 115/187 (61%), Gaps = 15/187 (8%)

Query: 1   MGNVSGRQDGEGC---------SGVKKREYEEGFEQSLTELGHGDP----MLHSPPHQSP 47
           MGNV+GR++ EG           G +    E       + + +  P    M HSPPH SP
Sbjct: 1   MGNVNGREEEEGAISPSSVGGGEGERSDSSEVMVASDESHVSYPAPPPEMMGHSPPH-SP 59

Query: 48  RAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQ 107
           RA   P +FT QVP+ PL R  D +Q+ +H+  ++   YEE+  E  +   ITWS GGK+
Sbjct: 60  RATHSPLLFTPQVPVAPLQRP-DEIQIPSHSWMQTSLGYEEMCNEHGIPTMITWSYGGKE 118

Query: 108 VAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNA 167
           VAV GSWD+W+   PL R GKD+ IMK+LPSGVY YRFIVD   RY+PD+PW  DD+GNA
Sbjct: 119 VAVEGSWDDWKTRIPLQRSGKDYTIMKVLPSGVYQYRFIVDGQWRYSPDLPWAKDDAGNA 178

Query: 168 YNVLDLQ 174
           +N LDLQ
Sbjct: 179 HNTLDLQ 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735878|emb|CBI18637.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 100/142 (70%), Gaps = 2/142 (1%)

Query: 33  GHGDPMLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYE 92
           G  + M  SPPH SPRA Q P +FT Q+P+ PL +  D M + NH+  ++ + YE++  E
Sbjct: 16  GSPELMGQSPPH-SPRATQSPLMFTPQIPVIPL-QKPDEMLITNHSWMQASSGYEDMCSE 73

Query: 93  KQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLR 152
           + +   ITWS GGK+VAV GSWDNW+   PL R GK+F IMK+LPSGVY YRFIVD   R
Sbjct: 74  QGIPTMITWSYGGKEVAVEGSWDNWKIRKPLQRSGKEFTIMKVLPSGVYQYRFIVDGQWR 133

Query: 153 YAPDVPWECDDSGNAYNVLDLQ 174
           Y PD+PW  DD+GNAYN+LDLQ
Sbjct: 134 YIPDMPWAQDDAGNAYNILDLQ 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137216|ref|XP_002322502.1| predicted protein [Populus trichocarpa] gi|222867132|gb|EEF04263.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 98/137 (71%), Gaps = 2/137 (1%)

Query: 38  MLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAA 97
           M HSPPH SPRA   P +FT Q+P+ PL R  D +QV +H+  ++   YEE+  E+ +  
Sbjct: 19  MGHSPPH-SPRATHSPLMFTPQLPVVPLQRP-DEIQVPSHSWMQNSLGYEEMCNEQGIPT 76

Query: 98  AITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDV 157
            ITW+ GGK+VAV GSWD+W+   PL R GKD+ IMK+LPSGVY YRFIVD   RYAPD+
Sbjct: 77  MITWTYGGKEVAVEGSWDDWKTRMPLQRSGKDYTIMKVLPSGVYQYRFIVDGQWRYAPDL 136

Query: 158 PWECDDSGNAYNVLDLQ 174
           PW  DDSGNAYN LDLQ
Sbjct: 137 PWAKDDSGNAYNTLDLQ 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387600862|gb|AFJ92922.1| Tau1 [Solanum lycopersicum]

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/179 (48%), Positives = 115/179 (64%), Gaps = 8/179 (4%)

Query: 1   MGNVSGRQ-DGEGC--SGVKKREYEEGFEQSLTELGHGDPMLHSPPHQSPRAFQPPPI-F 56
           MGNVSG++ +GE    SG+K +E+  G E+ +      D M+ SPPH SP+A+   P+ F
Sbjct: 1   MGNVSGKKKEGESAESSGIKNQEH--GEEEYMEYGLFPDSMVQSPPH-SPKAYHHSPLDF 57

Query: 57  TSQVPMDPLPRSGD-LMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWD 115
           T QVP+ PL R  + LMQ ++    +    Y ++  E  +   ITWS GG +VA+ GSWD
Sbjct: 58  TPQVPIFPLQRPDEILMQNQSGNIVQKTMEYGDMPCENGIPTMITWSHGGHEVAIEGSWD 117

Query: 116 NWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQ 174
            W+  D L R  KDF +MK+ PSGVYHYRFIVD   RYAPD P+E DD+GN +NVLDLQ
Sbjct: 118 GWKTKDFLQRTDKDFTVMKVFPSGVYHYRFIVDGQWRYAPDYPYERDDTGNVFNVLDLQ 176

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532768|ref|XP_003534943.1| PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Glycine max]

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 114/196 (58%), Gaps = 23/196 (11%)

Query: 1   MGNVSGRQDGEGC-SGVKKREYEEGF--------------EQSLTELGHGDPMLHSP--- 42
           MGN +GR D  G  SG +  E EE                  S+T+    +P  H+P   
Sbjct: 1   MGNANGRDDVNGTPSGTEGEEEEEEEEEEEEEEDDGEEGGSDSVTDCMSSNPSHHAPSEL 60

Query: 43  ----PHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAA 98
               P  SPRA Q P +FT QVP+ PL +  D M   + +  ++ + YE++  E  +   
Sbjct: 61  MGHSPPASPRATQSPFMFTPQVPVVPL-QKPDEMHAPSPSWMQTTSVYEDMYCELGIPTM 119

Query: 99  ITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVP 158
           ITWS  GK+VAV GSWDNW+   PL R GKDF IMK+LPSGVY +RFIVD   RYAPD+P
Sbjct: 120 ITWSYDGKEVAVEGSWDNWKTRMPLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLP 179

Query: 159 WECDDSGNAYNVLDLQ 174
           W  DDSGNAYNVLDLQ
Sbjct: 180 WAQDDSGNAYNVLDLQ 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563760|ref|XP_002522881.1| snf1-kinase beta subunit, plants, putative [Ricinus communis] gi|223537866|gb|EEF39481.1| snf1-kinase beta subunit, plants, putative [Ricinus communis]

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 97/137 (70%), Gaps = 2/137 (1%)

Query: 38  MLHSPPHQSPRAFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAA 97
           M  SPPH SPRA   P +FT QVP+ PL R  D +Q+ +++  ++   YE++  E+ +  
Sbjct: 65  MGQSPPH-SPRATHSPLMFTPQVPVVPLQRP-DEIQIPSNSWMQTNVGYEDICDEQGIPT 122

Query: 98  AITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDV 157
            ITWS GGK+VAV GSWDNW+   PL R GKD+ IMK+LPSGVY YRFI+D   RY PD+
Sbjct: 123 MITWSYGGKEVAVEGSWDNWKMRIPLQRSGKDYTIMKVLPSGVYQYRFIIDGQWRYIPDL 182

Query: 158 PWECDDSGNAYNVLDLQ 174
           PW  DD+GNAYN+LDLQ
Sbjct: 183 PWAQDDTGNAYNILDLQ 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2178963	320	AKINBETA1 "AT5G21170" [Arabido	0.493	0.35	0.412	3.1e-19
DICTYBASE|DDB_G0281089	347	prkab "AMP-activated protein k	0.365	0.239	0.385	2.7e-10
UNIPROTKB|P80387	122	PRKAB1 "5'-AMP-activated prote	0.488	0.909	0.280	8.6e-09
CGD|CAL0004936	412	KIS1 [Candida albicans (taxid:	0.356	0.196	0.365	4.7e-07
UNIPROTKB|Q59X47	412	KIS1 "Putative uncharacterized	0.356	0.196	0.365	4.7e-07
UNIPROTKB|F1RL45	270	PRKAB1 "5'-AMP-activated prote	0.502	0.422	0.274	5.7e-07
UNIPROTKB|Q5BIS9	270	PRKAB1 "5'-AMP-activated prote	0.502	0.422	0.298	7.9e-07
RGD|71057	270	Prkab1 "protein kinase, AMP-ac	0.502	0.422	0.298	7.9e-07
UNIPROTKB|E2RH75	270	PRKAB1 "Uncharacterized protei	0.502	0.422	0.290	1e-06
UNIPROTKB|Q9Y478	270	PRKAB1 "5'-AMP-activated prote	0.502	0.422	0.290	1e-06

TAIR|locus:2178963 AKINBETA1 "AT5G21170" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/114 (41%), Positives = 68/114 (59%)

Query:    60 VPMDPLPRSGDLMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWEN 119
             VP+ PL R+ +     N    +S   ++    E+ +   ITW+ GG  VAV GSWDNW +
Sbjct:   104 VPVAPLQRA-NAPPPNNIQWNQSQRVFDNPP-EQGIPTIITWNQGGNDVAVEGSWDNWRS 161

Query:   120 VDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDL 173
                L + GKD  I+ +LPSG+YHY+ IVD   +Y PD+P+  D+ GN  N+LD+
Sbjct:   162 RKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDV 215

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

DICTYBASE|DDB_G0281089 prkab "AMP-activated protein kinase beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 157 (60.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query:    92 EKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECL 151
             E+ V    TWS GGK V V+GS++NW+   PL R  KDF ++  L  GV+ Y++IVD   
Sbjct:   153 EQAVPTVFTWSGGGKDVYVSGSFNNWKEKIPLSRSEKDFTLIYNLAPGVHQYKYIVDGKW 212

Query:   152 RYAPDVPWECDDSGNAYNVLDLQ 174
              ++ + P   D  GN  N ++++
Sbjct:   213 IHSTEQPVAADIKGNLLNFIEVK 235

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P80387 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 132 (51.5 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 34/121 (28%), Positives = 59/121 (48%)

Query:    62 MDPLPRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAVTGS 113
             MD  P   DL    +++    E  +A+  +L    + +A        W+ GGK+V ++GS
Sbjct:     3 MDS-PEDADLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGS 61

Query:   114 WDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDL 173
             ++NW  + PL R   +FV +  LP G + Y+F+VD    + P  P      G   N++ +
Sbjct:    62 FNNWSKL-PLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQV 120

Query:   174 Q 174
             +
Sbjct:   121 K 121

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

CGD|CAL0004936 KIS1 [Candida albicans (taxid:5476)]

 Score = 137 (53.3 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%)

Query:    95 VAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKD-FVIMKMLPSGVYHYRFIVDECLRY 153
             V   I W  GG++V VTGS+  W  +  L +   D F+I   LP G + +RF+VD  LR+
Sbjct:   127 VPVDIKWVQGGQKVYVTGSFTGWRKMIGLVKQPDDNFMITLGLPVGTHRFRFVVDNELRF 186

Query:   154 APDVPWECDDSGNAYNVLDLQP 175
             +  +P   D  GN  N +++ P
Sbjct:   187 SDFLPTATDQMGNFVNYIEITP 208

GO:0030159 "receptor signaling complex scaffold activity" evidence=IGI;ISS

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IGI;ISS

GO:0007165 "signal transduction" evidence=IGI;ISS

GO:0035690 "cellular response to drug" evidence=IMP

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005641 "nuclear envelope lumen" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0001403 "invasive growth in response to glucose limitation" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0043254 "regulation of protein complex assembly" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

UNIPROTKB|Q59X47 KIS1 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 137 (53.3 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%)

Query:    95 VAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKD-FVIMKMLPSGVYHYRFIVDECLRY 153
             V   I W  GG++V VTGS+  W  +  L +   D F+I   LP G + +RF+VD  LR+
Sbjct:   127 VPVDIKWVQGGQKVYVTGSFTGWRKMIGLVKQPDDNFMITLGLPVGTHRFRFVVDNELRF 186

Query:   154 APDVPWECDDSGNAYNVLDLQP 175
             +  +P   D  GN  N +++ P
Sbjct:   187 SDFLPTATDQMGNFVNYIEITP 208

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IGI

GO:0007165 "signal transduction" evidence=IGI

GO:0030159 "receptor signaling complex scaffold activity" evidence=IGI

GO:0035690 "cellular response to drug" evidence=IMP

UNIPROTKB|F1RL45 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 133 (51.9 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 34/124 (27%), Positives = 61/124 (49%)

Query:    59 QVPMDPLPRSGDLM---QVRNHAAERSMAYYEELSYEKQVAA-----AITWSLGGKQVAV 110
             ++ MD  P   DL    +++    E  +A+  +L    + +A        W+ GGK+V +
Sbjct:    35 KILMDS-PEDADLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYL 93

Query:   111 TGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNV 170
             +GS++NW  + PL R   +FV +  LP G + Y+F+VD    + P  P      G   N+
Sbjct:    94 SGSFNNWSKL-PLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNI 152

Query:   171 LDLQ 174
             + ++
Sbjct:   153 IQVK 156

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5BIS9 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 132 (51.5 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 37/124 (29%), Positives = 61/124 (49%)

Query:    59 QVPMDPLPRSGDLM---QVRNHAAERSMAYYEELSY-EKQVAAA----ITWSLGGKQVAV 110
             ++ MD  P   DL    +++    E  +A+  +L   +K  A A      W+ GGK+V +
Sbjct:    35 KILMDS-PEDADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYL 93

Query:   111 TGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNV 170
             +GS++NW  + PL R   +FV +  LP G + Y+F VD    + P  P      G   NV
Sbjct:    94 SGSFNNWSKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNV 152

Query:   171 LDLQ 174
             + ++
Sbjct:   153 IQVK 156

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

RGD|71057 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 37/124 (29%), Positives = 59/124 (47%)

Query:    59 QVPMDPLPRSGDLMQVRNHAA---ERSMAYYEELSY-EKQVAAA----ITWSLGGKQVAV 110
             ++ MD  P   D+       A   E  +A+  +L   EK  A A      W+ GGK+V +
Sbjct:    35 KILMDS-PEDADIFHTEEMKAPEKEEFLAWQHDLEVNEKAPAQARPTVFRWTGGGKEVYL 93

Query:   111 TGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNV 170
             +GS++NW  + PL R   +FV +  LP G + Y+F VD    + P  P      G   N+
Sbjct:    94 SGSFNNWSKL-PLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI 152

Query:   171 LDLQ 174
             + ++
Sbjct:   153 IQVK 156

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|E2RH75 PRKAB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 36/124 (29%), Positives = 61/124 (49%)

Query:    59 QVPMDPLPRSGDLM---QVRNHAAERSMAYYEELSY-EKQVAAA----ITWSLGGKQVAV 110
             ++ MD  P   DL    +++    E  +A+  +L   +K  A A      W+ GGK+V +
Sbjct:    35 KILMDS-PEDADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYL 93

Query:   111 TGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNV 170
             +GS++NW  + PL R   +FV +  LP G + Y+F VD    + P  P      G   N+
Sbjct:    94 SGSFNNWSKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI 152

Query:   171 LDLQ 174
             + ++
Sbjct:   153 IQVK 156

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9Y478 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 36/124 (29%), Positives = 61/124 (49%)

Query:    59 QVPMDPLPRSGDLM---QVRNHAAERSMAYYEELSY-EKQVAAA----ITWSLGGKQVAV 110
             ++ MD  P   DL    +++    E  +A+  +L   +K  A A      W+ GGK+V +
Sbjct:    35 KILMDS-PEDADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYL 93

Query:   111 TGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNV 170
             +GS++NW  + PL R   +FV +  LP G + Y+F VD    + P  P      G   N+
Sbjct:    94 SGSFNNWSKL-PLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI 152

Query:   171 LDLQ 174
             + ++
Sbjct:   153 IQVK 156

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0024005201 hypothetical protein (293 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	9e-17
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	1e-04

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 71.9 bits (177), Expect = 9e-17
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 99  ITWSL-GGKQVAVTGSWDNWENVDPLWRLGK-DFVIMKMLPSGVYHYRFIVDECLRYAPD 156
             W   GGK+V VTGS+DNW+   PL + G  +F     LP G Y Y+FIVD    + PD
Sbjct: 4   FRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDGEFSATVELPPGRYEYKFIVDGEWVHDPD 63

Query: 157 VPWECDDSGNAYNVLD 172
           +P   D+ GN  NVL+
Sbjct: 64  LPTVTDEFGNLNNVLE 79

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 104 GGKQVAVTGSWDNWE-NVDPLWRLGK-DFVIMKMLPSGV-YHYRFIVDECLRYAPDVPWE 160
           G   V++ G +++W+    P+ +L    F     LP+G  Y +R+++D          W 
Sbjct: 12  GADSVSLVGDFNDWDPQATPMKKLKNGTFSATLDLPAGREYQFRYLIDGER-------WV 64

Query: 161 CDDSGNAY 168
            D   +AY
Sbjct: 65  NDPEADAY 72

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.94
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.88
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.79
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.28
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.84
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.52
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.49
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.87
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.64
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.58
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.57
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.53
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.44
PRK12313	633	glycogen branching enzyme; Provisional	97.25
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.2
PRK12568	730	glycogen branching enzyme; Provisional	97.2
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.18
PRK14705	1224	glycogen branching enzyme; Provisional	97.15
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	97.13
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.08
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.05
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.03
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	97.02
PRK14706	639	glycogen branching enzyme; Provisional	97.01
PRK05402	726	glycogen branching enzyme; Provisional	97.0
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	96.68
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.62
PRK05402	726	glycogen branching enzyme; Provisional	96.55
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.52
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.46
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.45
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.32
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	96.27
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	95.98
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	95.87
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	95.26
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	94.67
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	94.26
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	94.12
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	94.03
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	92.83
PLN02960	897	alpha-amylase	92.83
PLN02316	1036	synthase/transferase	92.48
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	92.31
PLN02316	1036	synthase/transferase	92.13
PLN02950	909	4-alpha-glucanotransferase	90.86
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	90.69
PLN02950	909	4-alpha-glucanotransferase	89.01
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	87.86
PRK03705	658	glycogen debranching enzyme; Provisional	87.85
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	87.52
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	86.59
COG3794	128	PetE Plastocyanin [Energy production and conversio	83.15
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	81.95
PLN02877	970	alpha-amylase/limit dextrinase	80.52

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.94  E-value=1.5e-26  Score=172.35  Aligned_cols=78  Identities=50%  Similarity=0.858  Sum_probs=75.0

Q ss_pred             eEEEEEecCCCceEEEEecCCCCCCCcCccccCCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeEEEE
Q 027175           95 VAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLD  172 (227)
Q Consensus        95 vpv~f~W~~gakeV~V~GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NNvL~  172 (227)
                      +||+|+|.++|++|+|+|+|++|+..++|.|+++.|++++.||+|.|+|||+|||+|++||++|++.|++|+.||+|+
T Consensus         2 ~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~   79 (79)
T cd02859           2 VPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID   79 (79)
T ss_pred             eEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence            799999999999999999999999879999987779999999999999999999999999999999999999999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.88  E-value=1.7e-22  Score=183.21  Aligned_cols=128  Identities=34%  Similarity=0.521  Sum_probs=112.8

Q ss_pred             CCCCCCCccCCCcCCCCCCCCCcccccchhhhhh-hhhhcccccCcceEEEEEecCCCceEEEEecCCCCCCCcCccccC
Q 027175           49 AFQPPPIFTSQVPMDPLPRSGDLMQVRNHAAERS-MAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLG  127 (227)
Q Consensus        49 ~~~~p~~f~pq~p~~p~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~vpv~f~W~~gakeV~V~GSFnnW~~~ipL~ks~  127 (227)
                      ......+|.|+.+..++++ +.+.....+.|.+. +..+.......++||+|+|..+++.|+|+|+|+||+.+++|.++.
T Consensus        34 ~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~  112 (289)
T KOG1616|consen   34 KIPSNSGFSPDDPDPPSTR-DEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG  112 (289)
T ss_pred             ccccccccCCcCCCCCcCc-ccccccccccccccccccccccccccCCceEEEecCCCceEEEecccccccccccceecC
Confidence            3333337899999999998 77767777888873 445666777889999999999999999999999999999999987


Q ss_pred             Cc---EEEEEeCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeEEEEcCCCc
Q 027175          128 KD---FVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQPAG  177 (227)
Q Consensus       128 ~~---f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NNvL~V~d~~  177 (227)
                      +.   |++++.|++|.|+|||+|||+|++|++.|+++|..|+.||+|.|.+..
T Consensus       113 ~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~  165 (289)
T KOG1616|consen  113 KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPD  165 (289)
T ss_pred             CCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCcc
Confidence            65   999999999999999999999999999999999999999999999765

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.79  E-value=4.7e-19  Score=131.90  Aligned_cols=76  Identities=28%  Similarity=0.462  Sum_probs=68.2

Q ss_pred             eEEEEEecC-CCceEEEEecCCCCCCCcCccccC-CcEEEEEeCCCeeEEEEEEEcCeec-cCCCCCe-eeCCCCCeeEE
Q 027175           95 VAAAITWSL-GGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKMLPSGVYHYRFIVDECLR-YAPDVPW-ECDDSGNAYNV  170 (227)
Q Consensus        95 vpv~f~W~~-gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~Lp~G~Y~YKFiVDG~W~-~Dp~~P~-~~D~~G~~NNv  170 (227)
                      ++++|+|.. .+++|+|+|+|++|+ ..+|+|.+ +.|++++.|++|.|+|||+|||.|. +||.++. ..|..|+.||+
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v   80 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV   80 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence            589999877 569999999999998 57999976 7999999999999999999999999 9999985 56788999998


Q ss_pred             E
Q 027175          171 L  171 (227)
Q Consensus       171 L  171 (227)
                      |
T Consensus        81 ~   81 (82)
T cd02861          81 F   81 (82)
T ss_pred             c
Confidence            7

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.28  E-value=2.5e-11  Score=91.35  Aligned_cols=75  Identities=20%  Similarity=0.350  Sum_probs=62.0

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEE-eCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeEEE
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMK-MLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVL  171 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l-~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NNvL  171 (227)
                      .++|+ |...|++|.|.|+|++|.. .+|+|.+ +.|++++ .|.+|.|.|+|+|||.++.||..+...-..+...|++
T Consensus         7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~   84 (85)
T cd02858           7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV   84 (85)
T ss_pred             cEEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence            46776 8889999999999998875 7899875 6899998 4888999999999999999999997764445544543

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.84  E-value=1.7e-08  Score=72.21  Aligned_cols=68  Identities=19%  Similarity=0.339  Sum_probs=56.6

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEEeCCC-eeEEEEEEEcCeeccCCCCCeeeCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKMLPS-GVYHYRFIVDECLRYAPDVPWECDD  163 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~Lp~-G~Y~YKFiVDG~W~~Dp~~P~~~D~  163 (227)
                      .+.|+ |...++.|.|.+.|++|....+|.+.. +.|++.+.+.. +.|.|+|+|||.|..++.++...+.
T Consensus         5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~   75 (83)
T cd02688           5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG   75 (83)
T ss_pred             cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence            46777 556789999999999976678998865 68999999988 9999999999999999887555443

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.52  E-value=3.9e-07  Score=70.85  Aligned_cols=65  Identities=18%  Similarity=0.351  Sum_probs=48.4

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc-CCcEEEEEeC--------CCe-eEEEEEEE-cCee--ccCCCCCee
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKML--------PSG-VYHYRFIV-DECL--RYAPDVPWE  160 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks-~~~f~~~l~L--------p~G-~Y~YKFiV-DG~W--~~Dp~~P~~  160 (227)
                      -++|+ |...|++|+|+|+||+|+.. .+|.|. .+.|+++++.        +.| .|.|++.. ||+|  +.||-.-.+
T Consensus         6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~~   85 (99)
T cd02854           6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKYV   85 (99)
T ss_pred             eEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeEE
Confidence            35675 99999999999999999864 689986 4689999764        455 46666666 7876  466655433

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.49  E-value=1.6e-07  Score=68.96  Aligned_cols=56  Identities=21%  Similarity=0.423  Sum_probs=44.8

Q ss_pred             EEEEE-ecCCCceEEEEecCCC-CCCC-cCccc--cCCcEEEEEe--CCCeeEEEEEEEcCee
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDN-WENV-DPLWR--LGKDFVIMKM--LPSGVYHYRFIVDECL  151 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnn-W~~~-ipL~k--s~~~f~~~l~--Lp~G~Y~YKFiVDG~W  151 (227)
                      -+.|+ |...|++|.|.+.|++ |... ++|++  .++.|++++.  |++|.+.|+|+|||..
T Consensus        12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            56676 9999999999999999 8754 68994  4679999998  8889888999988754

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.87  E-value=4.8e-05  Score=58.10  Aligned_cols=63  Identities=14%  Similarity=0.127  Sum_probs=47.7

Q ss_pred             EEE-EecCCCceEEEEecCCCCC-----CCcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCe-----eccCCCCCeee
Q 027175           97 AAI-TWSLGGKQVAVTGSWDNWE-----NVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDEC-----LRYAPDVPWEC  161 (227)
Q Consensus        97 v~f-~W~~gakeV~V~GSFnnW~-----~~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~-----W~~Dp~~P~~~  161 (227)
                      +.| .|...|++|.|.. |++|.     ..++|.+. ++.|++.+. +.+|.+ |+|.|+|.     .+.||-...+.
T Consensus        10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~~   85 (100)
T cd02860          10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKALS   85 (100)
T ss_pred             EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeEe
Confidence            567 4999999999998 88886     45689884 579999886 555654 88999876     67777665443

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.64  E-value=0.00051  Score=51.94  Aligned_cols=50  Identities=20%  Similarity=0.592  Sum_probs=37.2

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCC-CcCcccc--CCcEEEEEe-CCCeeEEEEEEE
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWEN-VDPLWRL--GKDFVIMKM-LPSGVYHYRFIV  147 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~-~ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiV  147 (227)
                      ++|+ |...|+.|.|.++|++|.. ..+|.+.  .+.|.+.+. +++|.+ |+|.|
T Consensus        23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~-Y~~~v   77 (106)
T cd02855          23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGEL-YKYEI   77 (106)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCE-EEEEE
Confidence            4554 9999999999999999964 3589874  458998885 666643 55555

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.58  E-value=0.00028  Score=53.02  Aligned_cols=52  Identities=25%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             EEEEEecC---CCceEEEEec---CCCCCCC--cCccccC-CcEEEEEeCCCe-eEEEEEEE
Q 027175           96 AAAITWSL---GGKQVAVTGS---WDNWENV--DPLWRLG-KDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        96 pv~f~W~~---gakeV~V~GS---FnnW~~~--ipL~ks~-~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      +++|.-..   .|..|+|+|+   +.+|+..  ++|...+ +.|++++.||.+ .++|||++
T Consensus         2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808           2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            45555432   5789999996   7899854  5887764 589999999987 59999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.57  E-value=0.00022  Score=54.20  Aligned_cols=53  Identities=25%  Similarity=0.501  Sum_probs=43.2

Q ss_pred             eEEEEEecC---CCceEEEEecCC---CCCC--CcCccccC-----CcEEEEEeCCCe-eEEEEEEE
Q 027175           95 VAAAITWSL---GGKQVAVTGSWD---NWEN--VDPLWRLG-----KDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        95 vpv~f~W~~---gakeV~V~GSFn---nW~~--~ipL~ks~-----~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      +.|+|.-..   .+..|+|+||..   +|+.  .++|....     ..|++++.||.+ .++|||+|
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            567776643   589999999997   8996  46888752     589999999998 59999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.00015  Score=72.69  Aligned_cols=62  Identities=15%  Similarity=0.433  Sum_probs=48.3

Q ss_pred             eEEEEE-ecCCCceEEEEecCCCCCCC-cCccc--cCCcEEEEEe-CCCeeEEEEEEEcCee-----ccCCCC
Q 027175           95 VAAAIT-WSLGGKQVAVTGSWDNWENV-DPLWR--LGKDFVIMKM-LPSGVYHYRFIVDECL-----RYAPDV  157 (227)
Q Consensus        95 vpv~f~-W~~gakeV~V~GSFnnW~~~-ipL~k--s~~~f~~~l~-Lp~G~Y~YKFiVDG~W-----~~Dp~~  157 (227)
                      ..|.|+ |...++.|.|.|+||+|... .+|..  ..+.|++++. +++| +.|||.|++..     +.||-.
T Consensus        36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a  107 (628)
T COG0296          36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYA  107 (628)
T ss_pred             CceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchh
Confidence            467776 99999999999999999973 24432  2368999998 9999 89999996543     566543

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.44  E-value=0.00041  Score=71.01  Aligned_cols=62  Identities=18%  Similarity=0.341  Sum_probs=45.9

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCccccC-CcEEEEEe-------CCCeeEEEEEEEc---Ce--eccCCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRLG-KDFVIMKM-------LPSGVYHYRFIVD---EC--LRYAPDVP  158 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks~-~~f~~~l~-------Lp~G~Y~YKFiVD---G~--W~~Dp~~P  158 (227)
                      -|+|+ |...|++|+|+|+||+|... .+|+|.+ +.|++.++       ++.|. .|||.|.   |.  .+.||-..
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchHh
Confidence            46675 99999999999999999864 5899864 69999886       34453 6777773   54  35566443

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.25  E-value=0.00091  Score=66.68  Aligned_cols=62  Identities=21%  Similarity=0.435  Sum_probs=46.2

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc-CCcEEEEEe-CCCe-eEEEEEEE-cCee--ccCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKM-LPSG-VYHYRFIV-DECL--RYAPDV  157 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks-~~~f~~~l~-Lp~G-~Y~YKFiV-DG~W--~~Dp~~  157 (227)
                      -|+|+ |...|++|+|+|+||+|... .+|.|. .+.|++++. +.+| .|.|++.+ ||.|  +.||..
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya  108 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFA  108 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCce
Confidence            56775 88899999999999999864 589885 569999987 4455 57777654 5665  445544

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.20  E-value=0.0012  Score=50.82  Aligned_cols=52  Identities=17%  Similarity=0.148  Sum_probs=40.3

Q ss_pred             EEE-EecCCCceEEEEecCCCCC--CCcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCe
Q 027175           97 AAI-TWSLGGKQVAVTGSWDNWE--NVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDEC  150 (227)
Q Consensus        97 v~f-~W~~gakeV~V~GSFnnW~--~~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~  150 (227)
                      +.| .|...|++|.|.. |++|.  ..++|.+. ++.|.+.+. +.+|. .|+|.|||.
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~   67 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP   67 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence            556 4999999999998 66664  34689876 479999884 66665 799999994

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.20  E-value=0.00089  Score=68.34  Aligned_cols=62  Identities=19%  Similarity=0.502  Sum_probs=47.2

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc-CCcEEEEEe-CCCeeEEEEEEE---cCeec--cCCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKM-LPSGVYHYRFIV---DECLR--YAPDVP  158 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiV---DG~W~--~Dp~~P  158 (227)
                      -|.|+ |...|++|.|+|+||+|..+ .+|.+. ++.|++.++ +..|. .|||.|   ||.+.  .||-.-
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA~  209 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVAR  209 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcce
Confidence            46785 99999999999999999864 588764 569999884 67774 577777   78653  566543

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.18  E-value=0.0049  Score=46.88  Aligned_cols=53  Identities=25%  Similarity=0.439  Sum_probs=43.2

Q ss_pred             eEEEEEecC---CCceEEEEecC---CCCCCCcCccccCCcEEEEEeCCCe-eEEEEEEE
Q 027175           95 VAAAITWSL---GGKQVAVTGSW---DNWENVDPLWRLGKDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        95 vpv~f~W~~---gakeV~V~GSF---nnW~~~ipL~ks~~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      +.++|+-.+   -|..++|+|+-   -+|+...+|.-..+.|++.+.||.+ .++|||++
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~   61 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI   61 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence            456666554   47899999986   5898777887777789999999987 59999999

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK14705 glycogen branching enzyme; Provisional

Probab=97.15  E-value=0.00092  Score=71.54  Aligned_cols=60  Identities=17%  Similarity=0.432  Sum_probs=46.2

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc--CCcEEEEEe-CCCeeEEEEEEEc---Cee--ccCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSGVYHYRFIVD---ECL--RYAPD  156 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiVD---G~W--~~Dp~  156 (227)
                      -|.|+ |...|+.|.|+|+||+|..+ .+|.+.  .+.|++.++ +.+|. .|||.|+   |.|  +.||-
T Consensus       639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPy  708 (1224)
T PRK14705        639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPL  708 (1224)
T ss_pred             eEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcc
Confidence            56775 99999999999999999865 588873  479999885 77886 6888884   544  44553

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=97.13  E-value=0.0014  Score=51.59  Aligned_cols=54  Identities=19%  Similarity=0.187  Sum_probs=41.7

Q ss_pred             EEE-EecCCCceEEEEecCCCCC---C--CcCcccc----CCcEEEEEe-CCCeeEEEEEEEcCeec
Q 027175           97 AAI-TWSLGGKQVAVTGSWDNWE---N--VDPLWRL----GKDFVIMKM-LPSGVYHYRFIVDECLR  152 (227)
Q Consensus        97 v~f-~W~~gakeV~V~GSFnnW~---~--~ipL~ks----~~~f~~~l~-Lp~G~Y~YKFiVDG~W~  152 (227)
                      +.| .|...|++|.|.. |++|.   .  +++|.+.    ++.|++.+. +..|. .|+|.|||.|.
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~   73 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE   73 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence            556 4999999999999 88886   2  3577654    479998875 67786 69999999754

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.08  E-value=0.0017  Score=51.59  Aligned_cols=46  Identities=35%  Similarity=0.573  Sum_probs=38.5

Q ss_pred             CCceEEEEec---CCCCCC--CcCcccc--C-CcEEEEEeCCCe-eEEEEEEEcC
Q 027175          104 GGKQVAVTGS---WDNWEN--VDPLWRL--G-KDFVIMKMLPSG-VYHYRFIVDE  149 (227)
Q Consensus       104 gakeV~V~GS---FnnW~~--~ipL~ks--~-~~f~~~l~Lp~G-~Y~YKFiVDG  149 (227)
                      .+..|+|+|+   +.+|+.  ..+|.+.  . +.|++.+.||.+ .++|||++..
T Consensus        14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~~   68 (120)
T cd05814          14 PGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVAV   68 (120)
T ss_pred             CCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEEE
Confidence            5789999999   889984  3588875  3 579999999998 7999999943

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.05  E-value=0.0045  Score=47.56  Aligned_cols=54  Identities=24%  Similarity=0.407  Sum_probs=41.1

Q ss_pred             ceEEEEEecC----CCceEEEEe---cCCCCCCCc-Ccccc----CCcEEEEEeCCCee-EEEEEEE
Q 027175           94 QVAAAITWSL----GGKQVAVTG---SWDNWENVD-PLWRL----GKDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        94 ~vpv~f~W~~----gakeV~V~G---SFnnW~~~i-pL~ks----~~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      .|+|+|.-..    .+.+|+|+|   ++.+|+... +|...    ...|++.+.||.|. ++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            4788888632    578999999   567998642 34332    35799999999985 9999999

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.03  E-value=0.0087  Score=46.44  Aligned_cols=54  Identities=26%  Similarity=0.500  Sum_probs=42.3

Q ss_pred             ceEEEEEecC-----CCceEEEEecC---CCCCCCc-----Ccccc-CCcEEEEEeCCCee-EEEEEEE
Q 027175           94 QVAAAITWSL-----GGKQVAVTGSW---DNWENVD-----PLWRL-GKDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        94 ~vpv~f~W~~-----gakeV~V~GSF---nnW~~~i-----pL~ks-~~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      .+||+|+-..     -|..|+|+|+-   -+|+...     +|... ...|++.+.||.|. .+|||++
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence            3899999863     47899999985   4898632     56544 35899999999985 9999998

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.02  E-value=0.0025  Score=48.34  Aligned_cols=53  Identities=23%  Similarity=0.379  Sum_probs=40.4

Q ss_pred             eEEEEEecC----CCceEEEEecC---CCCCCCcCccccC-CcEEEEEeCCCee-EEEEEEE
Q 027175           95 VAAAITWSL----GGKQVAVTGSW---DNWENVDPLWRLG-KDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        95 vpv~f~W~~----gakeV~V~GSF---nnW~~~ipL~ks~-~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      |+++|+-.+    ++..|+|+|+-   -+|+...+|.... ..|++.+.||.+. ++|||++
T Consensus         1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            345665433    45778899975   4788778897654 5799999999986 9999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK14706 glycogen branching enzyme; Provisional

Probab=97.01  E-value=0.0016  Score=65.44  Aligned_cols=62  Identities=23%  Similarity=0.502  Sum_probs=46.5

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCccccC-CcEEEEEe-CCCeeEEEEEEEcC---ee--ccCCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRLG-KDFVIMKM-LPSGVYHYRFIVDE---CL--RYAPDVP  158 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks~-~~f~~~l~-Lp~G~Y~YKFiVDG---~W--~~Dp~~P  158 (227)
                      -|.|+ |...|++|.|+|+||+|... .+|.|.+ +.|++.++ +..| ..|||.|++   .+  +.||-.-
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~  109 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGS  109 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceE
Confidence            36775 99999999999999999864 5898864 68999886 4455 468888865   33  5665543

>PRK05402 glycogen branching enzyme; Provisional

Probab=97.00  E-value=0.0021  Score=65.21  Aligned_cols=56  Identities=18%  Similarity=0.522  Sum_probs=43.1

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc--CCcEEEEEe-CCCe-eEEEEEEEc-Cee
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSG-VYHYRFIVD-ECL  151 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks--~~~f~~~l~-Lp~G-~Y~YKFiVD-G~W  151 (227)
                      -|+|+ |...|++|.|+|+||+|... .+|+|.  .+.|++.+. +++| .|.|++..+ |.+
T Consensus       132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~  194 (726)
T PRK05402        132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGEL  194 (726)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcE
Confidence            46776 88899999999999999864 589986  368998875 6677 577766664 444

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.68  E-value=0.0078  Score=46.31  Aligned_cols=55  Identities=25%  Similarity=0.475  Sum_probs=42.2

Q ss_pred             cceEEEEEecC---CCceEEEEecCC---CCCCC--cCcccc-----CCcEEEEEeCCCee-EEEEEEE
Q 027175           93 KQVAAAITWSL---GGKQVAVTGSWD---NWENV--DPLWRL-----GKDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~---gakeV~V~GSFn---nW~~~--ipL~ks-----~~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      ..+++.|.-.+   -|..|+|+|+-.   +|+..  ++|...     +..|++.+.||.+. ++|||+|
T Consensus         5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            34777776543   588999999864   79863  578653     35799999999885 9999997

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.62  E-value=0.0064  Score=59.89  Aligned_cols=60  Identities=18%  Similarity=0.272  Sum_probs=47.4

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEEe-CCCeeEEEEEEEcC-eeccCCCCCeee
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKM-LPSGVYHYRFIVDE-CLRYAPDVPWEC  161 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~-Lp~G~Y~YKFiVDG-~W~~Dp~~P~~~  161 (227)
                      |+|+ |...|++|.|...   + ...+|+|.+ +.|++++. +.+| +.|+|.||| ..+.||......
T Consensus         1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~   64 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---G-ALHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP   64 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---C-CEEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence            4564 9999999999973   3 247899875 59999986 7778 789999999 778888776543

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.55  E-value=0.0053  Score=62.37  Aligned_cols=54  Identities=19%  Similarity=0.068  Sum_probs=40.5

Q ss_pred             EEEE-EecCCCceEEEEecCCCCCCCcCcccc--CCcEEEEEeCCCeeEEEEEEE--cCee
Q 027175           96 AAAI-TWSLGGKQVAVTGSWDNWENVDPLWRL--GKDFVIMKMLPSGVYHYRFIV--DECL  151 (227)
Q Consensus        96 pv~f-~W~~gakeV~V~GSFnnW~~~ipL~ks--~~~f~~~l~Lp~G~Y~YKFiV--DG~W  151 (227)
                      =|+| +|...|++|.|+|+||+ ....+|+|.  .+.|++.+++..|.. |||.|  ||.+
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~-YKy~i~~~g~~   87 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFD-YRLRVTWGGGE   87 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCC-eEEEEEeCCce
Confidence            3456 59999999999999997 344689974  468999988777742 55555  7853

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.52  E-value=0.0096  Score=45.82  Aligned_cols=45  Identities=18%  Similarity=0.367  Sum_probs=36.7

Q ss_pred             CCCceEEEEec---CCCCCCC--cCccccC-CcEEEEEeCCCe-eEEEEEEE
Q 027175          103 LGGKQVAVTGS---WDNWENV--DPLWRLG-KDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus       103 ~gakeV~V~GS---FnnW~~~--ipL~ks~-~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      .-|..|+|+|+   .-+|+..  ++|...+ ..|++.+.||.+ .++|||+|
T Consensus        11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence            35789999999   5689854  5787654 489999999987 59999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.46  E-value=0.014  Score=44.81  Aligned_cols=44  Identities=27%  Similarity=0.472  Sum_probs=36.1

Q ss_pred             CCceEEEEecC---CCCCC--CcCccccC-CcEEEEEeCCCe--eEEEEEEE
Q 027175          104 GGKQVAVTGSW---DNWEN--VDPLWRLG-KDFVIMKMLPSG--VYHYRFIV  147 (227)
Q Consensus       104 gakeV~V~GSF---nnW~~--~ipL~ks~-~~f~~~l~Lp~G--~Y~YKFiV  147 (227)
                      .+..|+|+|+-   .+|+.  .++|.... ..|++.+.||++  .++|||++
T Consensus        13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816          13 KGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             CCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence            57899999985   58985  35888764 479999999886  58999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.45  E-value=0.012  Score=43.91  Aligned_cols=45  Identities=29%  Similarity=0.439  Sum_probs=37.0

Q ss_pred             CCCceEEEEecCC---CCCC--CcCccccC--CcEEEEEeCCC--e-eEEEEEEE
Q 027175          103 LGGKQVAVTGSWD---NWEN--VDPLWRLG--KDFVIMKMLPS--G-VYHYRFIV  147 (227)
Q Consensus       103 ~gakeV~V~GSFn---nW~~--~ipL~ks~--~~f~~~l~Lp~--G-~Y~YKFiV  147 (227)
                      ..|..|+|+|+..   +|+.  .++|...+  +.|++.+.||.  + .++|||++
T Consensus        11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence            3588999999975   8884  46888664  68999999998  7 59999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.32  E-value=0.016  Score=43.00  Aligned_cols=59  Identities=20%  Similarity=0.204  Sum_probs=42.9

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCCCcCcccc-CCcEEEEEeCCCeeEEEEEEEc-CeeccCCCCCe
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIVD-ECLRYAPDVPW  159 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~~ipL~ks-~~~f~~~l~Lp~G~Y~YKFiVD-G~W~~Dp~~P~  159 (227)
                      +.|+ |...|++|.|....  |. .++|.|. ++.|++++..-+|. .|+|.|+ +..+.||....
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~   71 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF   71 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence            5565 99999999999643  54 4789876 46899988633665 4777776 56788887654

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=96.27  E-value=0.01  Score=59.17  Aligned_cols=62  Identities=18%  Similarity=0.434  Sum_probs=46.3

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc--CCcEEEEEe-CCCeeEEEEEEEc---Ce--eccCCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSGVYHYRFIVD---EC--LRYAPDVP  158 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiVD---G~--W~~Dp~~P  158 (227)
                      -|+|+ |...|++|.|+|+||+|... .+|.+.  .+.|++.+. +.+|. .|||.|+   |.  .+.||-.-
T Consensus        29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~  100 (613)
T TIGR01515        29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAF  100 (613)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEe
Confidence            46675 99999999999999999764 489875  468998886 45565 5888884   54  46666543

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.98  E-value=0.031  Score=42.99  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=35.4

Q ss_pred             CCceEEEEecCC---CCCCC--cCccccC-CcEEEEEeCCCe-eEEEEEEE
Q 027175          104 GGKQVAVTGSWD---NWENV--DPLWRLG-KDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus       104 gakeV~V~GSFn---nW~~~--ipL~ks~-~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      -+..|+|+|+-.   +|+..  ++|.... ..|++.+.||.| ..+|||++
T Consensus        14 ~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810          14 LGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence            578999999865   89853  5676553 479999999998 59999988

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.87  E-value=0.033  Score=42.76  Aligned_cols=54  Identities=20%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             ceEEEEEec-C---CCceEEEEecC---CCCCCCc--Ccc-c----cCCcEEEEEeCCCee-EEEEEEE
Q 027175           94 QVAAAITWS-L---GGKQVAVTGSW---DNWENVD--PLW-R----LGKDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        94 ~vpv~f~W~-~---gakeV~V~GSF---nnW~~~i--pL~-k----s~~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      .++++|.-. .   -|..|+|+|+-   -+|+...  .|. .    ....|++.+.||.|. ++|||++
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            377888864 2   47899999985   4898643  232 2    234799999999985 9999998

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=95.26  E-value=0.084  Score=40.03  Aligned_cols=54  Identities=17%  Similarity=0.394  Sum_probs=35.8

Q ss_pred             EEEEEecC------CCceEEEEecCCCCCCC--cCccccC-----CcEEEEEeCCCeeEEEEEEE-cC
Q 027175           96 AAAITWSL------GGKQVAVTGSWDNWENV--DPLWRLG-----KDFVIMKMLPSGVYHYRFIV-DE  149 (227)
Q Consensus        96 pv~f~W~~------gakeV~V~GSFnnW~~~--ipL~ks~-----~~f~~~l~Lp~G~Y~YKFiV-DG  149 (227)
                      +|+|.|+.      ++.+|+|.+.|++|+..  +.|.+..     +.|+++|.+|..-|...|+. ||
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg   70 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG   70 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence            45666632      47899999999999865  4677653     67999999999989999998 76

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>TIGR02104 pulA_typeI pullulanase, type I

Probab=94.67  E-value=0.087  Score=52.50  Aligned_cols=62  Identities=15%  Similarity=0.166  Sum_probs=43.8

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCC-----CcCcccc-CCcEEEEEe-CCCee-EEEEEEEcCe--eccCCCCCe
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWEN-----VDPLWRL-GKDFVIMKM-LPSGV-YHYRFIVDEC--LRYAPDVPW  159 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~-----~ipL~ks-~~~f~~~l~-Lp~G~-Y~YKFiVDG~--W~~Dp~~P~  159 (227)
                      |.|+ |...|++|.|.+ |++|..     .++|.+. ++.|++.+. +..|. |.|+...+|.  ++.||-...
T Consensus        21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~   93 (605)
T TIGR02104        21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKA   93 (605)
T ss_pred             eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcce
Confidence            6775 999999999998 888853     4588875 469999986 55664 4444444564  478876543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=94.26  E-value=0.29  Score=39.42  Aligned_cols=85  Identities=26%  Similarity=0.282  Sum_probs=54.6

Q ss_pred             eEEEEEec----CCCceEEEEecCCCCCCC-----cCccccCC--cEEEEEeCCCe-eEEEEEEEcCe------------
Q 027175           95 VAAAITWS----LGGKQVAVTGSWDNWENV-----DPLWRLGK--DFVIMKMLPSG-VYHYRFIVDEC------------  150 (227)
Q Consensus        95 vpv~f~W~----~gakeV~V~GSFnnW~~~-----ipL~ks~~--~f~~~l~Lp~G-~Y~YKFiVDG~------------  150 (227)
                      .-|+|.|.    .....|.|-++.|+.+..     ..|+|-.+  +|..++.||.. +-.|+|+.+-.            
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~   81 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRA   81 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHH
Confidence            35899999    456789999999998643     47888754  79999999987 68899997432            


Q ss_pred             ----eccCCCCCeee-CC---CCCeeEEEEcCCCccc
Q 027175          151 ----LRYAPDVPWEC-DD---SGNAYNVLDLQPAGCL  179 (227)
Q Consensus       151 ----W~~Dp~~P~~~-D~---~G~~NNvL~V~d~~~~  179 (227)
                          -+.||-||... ..   .|...++|+..+..++
T Consensus        82 ~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~Ap~q  118 (122)
T PF11806_consen   82 ILAQAQADPLNPRPWPNGAQDRGNAASVLELPDAPPQ  118 (122)
T ss_dssp             HGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS---
T ss_pred             HHhccCCCCCCCCCCCCCccccccccCceeCCCCccC
Confidence                36789888653 33   4889999998765443

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=94.12  E-value=0.14  Score=39.13  Aligned_cols=44  Identities=20%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             CCceEEEEecC---CCCCCC--cCcccc----CCcEEEEEeCCCe-eEEEEEEE
Q 027175          104 GGKQVAVTGSW---DNWENV--DPLWRL----GKDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus       104 gakeV~V~GSF---nnW~~~--ipL~ks----~~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      -|..|+|+|+-   -+|+..  ++|...    ...|++.+.||.+ .++|||+|
T Consensus        12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815          12 WGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             CCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            47899999985   478753  577532    2369999999987 49999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=94.03  E-value=0.31  Score=39.00  Aligned_cols=50  Identities=18%  Similarity=0.352  Sum_probs=38.0

Q ss_pred             EEEecCCCceEEEEecC---CCCCCC--cCcccc-------C-CcEEEEEeCCCe----eEEEEEEE
Q 027175           98 AITWSLGGKQVAVTGSW---DNWENV--DPLWRL-------G-KDFVIMKMLPSG----VYHYRFIV  147 (227)
Q Consensus        98 ~f~W~~gakeV~V~GSF---nnW~~~--ipL~ks-------~-~~f~~~l~Lp~G----~Y~YKFiV  147 (227)
                      +.+....+.+|+|+|+-   -+|+..  ++|...       . ..|.+.+.|+.+    .++|||+.
T Consensus         8 ~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806           8 VLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             EEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            33566788999999984   589854  466643       2 369999999986    69999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=92.83  E-value=0.57  Score=44.79  Aligned_cols=89  Identities=20%  Similarity=0.205  Sum_probs=60.9

Q ss_pred             cCcceEEEEEecC-CC-------ceEEEE--ecCC--CCCCCcCccccCC--cEEEEEeCCCe-eEEEEEEEc-------
Q 027175           91 YEKQVAAAITWSL-GG-------KQVAVT--GSWD--NWENVDPLWRLGK--DFVIMKMLPSG-VYHYRFIVD-------  148 (227)
Q Consensus        91 ~~~~vpv~f~W~~-ga-------keV~V~--GSFn--nW~~~ipL~ks~~--~f~~~l~Lp~G-~Y~YKFiVD-------  148 (227)
                      ....+-|+|-|.. .+       +.|+|.  |.-|  .+.....|+|-.+  +|..++.||.. +-.|+|+++       
T Consensus        35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~  114 (411)
T PRK10439         35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFS  114 (411)
T ss_pred             CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEecccccccc
Confidence            3455899999997 33       258874  2222  2333347999764  79999999998 688999992       


Q ss_pred             ---------------------CeeccCCCCCeee-CCCCCeeEEEEcCCCccc
Q 027175          149 ---------------------ECLRYAPDVPWEC-DDSGNAYNVLDLQPAGCL  179 (227)
Q Consensus       149 ---------------------G~W~~Dp~~P~~~-D~~G~~NNvL~V~d~~~~  179 (227)
                                           +.-+.||.+|... +..|+..|+|++.+..++
T Consensus       115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~~~  167 (411)
T PRK10439        115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAPLQ  167 (411)
T ss_pred             ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCCCC
Confidence                                 1124788888654 445665799999865443

>PLN02960 alpha-amylase

Probab=92.83  E-value=0.1  Score=54.66  Aligned_cols=51  Identities=20%  Similarity=0.504  Sum_probs=38.7

Q ss_pred             EEEecCCCceEEEEecCCCCCCCc-Ccc-----ccC-CcEEEEEe--CCCee-------EEEEEEEc
Q 027175           98 AITWSLGGKQVAVTGSWDNWENVD-PLW-----RLG-KDFVIMKM--LPSGV-------YHYRFIVD  148 (227)
Q Consensus        98 ~f~W~~gakeV~V~GSFnnW~~~i-pL~-----ks~-~~f~~~l~--Lp~G~-------Y~YKFiVD  148 (227)
                      -..|..+|..++|+|+||||..+. .|.     |++ +.|.++|+  |..|+       -+|.|..|
T Consensus       132 ~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        132 FMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             EEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            346999999999999999999865 444     333 57998874  77772       25888875

>PLN02316 synthase/transferase

Probab=92.48  E-value=0.9  Score=48.61  Aligned_cols=74  Identities=14%  Similarity=0.298  Sum_probs=52.2

Q ss_pred             cCcceEEEEEecC------CCceEEEEecCCCCCCCc----Ccccc----CCcEEEEEeCCCeeEEEEEEE-cCeeccCC
Q 027175           91 YEKQVAAAITWSL------GGKQVAVTGSWDNWENVD----PLWRL----GKDFVIMKMLPSGVYHYRFIV-DECLRYAP  155 (227)
Q Consensus        91 ~~~~vpv~f~W~~------gakeV~V~GSFnnW~~~i----pL~ks----~~~f~~~l~Lp~G~Y~YKFiV-DG~W~~Dp  155 (227)
                      +..+-++++-|+.      ++.+|+|.|.||+|+...    .|.++    +..|.+++.+|..-|-.-|+. ||.    |
T Consensus       325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~----~  400 (1036)
T PLN02316        325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP----P  400 (1036)
T ss_pred             cCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC----c
Confidence            3556788888873      468999999999998532    33332    336899999999999999998 784    2


Q ss_pred             CCCeeeCCCCCee
Q 027175          156 DVPWECDDSGNAY  168 (227)
Q Consensus       156 ~~P~~~D~~G~~N  168 (227)
                      ......|.+++.+
T Consensus       401 ~~~~~yDNn~~~D  413 (1036)
T PLN02316        401 GNARNYDNNGRQD  413 (1036)
T ss_pred             ccccccccCCCcc
Confidence            3334445544433

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=92.31  E-value=0.3  Score=49.81  Aligned_cols=53  Identities=15%  Similarity=0.110  Sum_probs=39.4

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCC----CcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCee
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWEN----VDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDECL  151 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~----~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~W  151 (227)
                      |.|+ |...|+.|.|. -|++|..    .++|.+. +++|.+.+. +..|. .|+|.|+|.|
T Consensus        16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~~   75 (688)
T TIGR02100        16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGPY   75 (688)
T ss_pred             EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence            5675 88999999986 5565542    3578765 569999985 67777 4999999843

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PLN02316 synthase/transferase

Probab=92.13  E-value=0.43  Score=50.96  Aligned_cols=62  Identities=13%  Similarity=0.269  Sum_probs=47.5

Q ss_pred             eEEEEEecC------CCceEEEEecCCCCCCC---cCccccC---CcEEEEEeCCCeeEEEEEEE-cCeeccCCC
Q 027175           95 VAAAITWSL------GGKQVAVTGSWDNWENV---DPLWRLG---KDFVIMKMLPSGVYHYRFIV-DECLRYAPD  156 (227)
Q Consensus        95 vpv~f~W~~------gakeV~V~GSFnnW~~~---ipL~ks~---~~f~~~l~Lp~G~Y~YKFiV-DG~W~~Dp~  156 (227)
                      -++.+-|+.      +..+|.|.|.||+|...   ..|.|++   +.|++.+.+|+.-|..-|+. ||.-.+|.+
T Consensus       154 ~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN  228 (1036)
T PLN02316        154 SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNN  228 (1036)
T ss_pred             CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccC
Confidence            456666654      34789999999999864   3777763   36899999999999999998 886555543

>PLN02950 4-alpha-glucanotransferase

Probab=90.86  E-value=1.8  Score=45.76  Aligned_cols=67  Identities=18%  Similarity=0.265  Sum_probs=48.0

Q ss_pred             cCcceEEEEEecC----CCceEEEEecC---CCCCCC--cCcccc-CCcEEEEEeCCCe--eEEEEEEE---cC--eecc
Q 027175           91 YEKQVAAAITWSL----GGKQVAVTGSW---DNWENV--DPLWRL-GKDFVIMKMLPSG--VYHYRFIV---DE--CLRY  153 (227)
Q Consensus        91 ~~~~vpv~f~W~~----gakeV~V~GSF---nnW~~~--ipL~ks-~~~f~~~l~Lp~G--~Y~YKFiV---DG--~W~~  153 (227)
                      ....++|+|+-..    .|..|+|+|+-   -+|+..  .+|... ...|++.+.||.+  ..+|||++   +|  .|-.
T Consensus       149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~  228 (909)
T PLN02950        149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLEL  228 (909)
T ss_pred             CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEee
Confidence            3455788888533    58899999985   489854  466644 3589999999988  48999998   44  3654


Q ss_pred             CCCC
Q 027175          154 APDV  157 (227)
Q Consensus       154 Dp~~  157 (227)
                      .++.
T Consensus       229 g~NR  232 (909)
T PLN02950        229 GVNR  232 (909)
T ss_pred             CCCc
Confidence            4443

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=90.69  E-value=0.61  Score=50.18  Aligned_cols=62  Identities=18%  Similarity=0.262  Sum_probs=44.7

Q ss_pred             EEEE-ecCCCceEEEEe-cCCCCCC---CcCcccc-CCcEEEEEe-CCCe-----eEEEEEEEcC----eeccCCCCC
Q 027175           97 AAIT-WSLGGKQVAVTG-SWDNWEN---VDPLWRL-GKDFVIMKM-LPSG-----VYHYRFIVDE----CLRYAPDVP  158 (227)
Q Consensus        97 v~f~-W~~gakeV~V~G-SFnnW~~---~ipL~ks-~~~f~~~l~-Lp~G-----~Y~YKFiVDG----~W~~Dp~~P  158 (227)
                      +.|+ |...|++|.|+. ++++|..   .++|.+. +++|++.+. +.+|     -+.|+|.|++    ..+.||...
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            5675 999999999997 4556653   5689876 469999986 4433     3688888876    456776554

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PLN02950 4-alpha-glucanotransferase

Probab=89.01  E-value=2.3  Score=45.00  Aligned_cols=55  Identities=22%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             cceEEEEEecC---CCceEEEEecCC---CCCCC--cCcccc----CCcEEEEEeCCCe-eEEEEEEE
Q 027175           93 KQVAAAITWSL---GGKQVAVTGSWD---NWENV--DPLWRL----GKDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~---gakeV~V~GSFn---nW~~~--ipL~ks----~~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      ..+.++|.-.+   -|.+|+|+|+-.   +|+..  ++|.-.    +..|++++.||.| ..+|||++
T Consensus         7 ~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~   74 (909)
T PLN02950          7 KSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV   74 (909)
T ss_pred             CcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence            44666666443   489999999874   78754  577533    2379999999987 49999995

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=87.86  E-value=3  Score=31.62  Aligned_cols=53  Identities=15%  Similarity=0.073  Sum_probs=35.0

Q ss_pred             eEEEEEec-CCCceEEEEecCCC--CC-CCcCccccCC-----cEEEEEeCCCeeEEEEEEE
Q 027175           95 VAAAITWS-LGGKQVAVTGSWDN--WE-NVDPLWRLGK-----DFVIMKMLPSGVYHYRFIV  147 (227)
Q Consensus        95 vpv~f~W~-~gakeV~V~GSFnn--W~-~~ipL~ks~~-----~f~~~l~Lp~G~Y~YKFiV  147 (227)
                      +.++|+=. ...+.|.|.-.-+.  +. ..++|.+.+.     .|++++.++.|.+.|.|+|
T Consensus        18 v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          18 LHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             EEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence            44444322 34678888654332  22 2468987642     4899999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>PRK03705 glycogen debranching enzyme; Provisional

Probab=87.85  E-value=1.1  Score=45.62  Aligned_cols=53  Identities=17%  Similarity=0.122  Sum_probs=39.7

Q ss_pred             EEEE-ecCCCceEEEEecCCCCC--CCcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCee
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWE--NVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDECL  151 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~--~~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~W  151 (227)
                      |.|+ |...|++|.|.. |+++.  ..++|.+. +++|++.+. +.+|. .|+|.|+|.|
T Consensus        21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~   78 (658)
T PRK03705         21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPW   78 (658)
T ss_pred             EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence            6675 899999999997 77653  24678765 569999885 55665 5999999853

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=87.52  E-value=2.4  Score=44.78  Aligned_cols=64  Identities=17%  Similarity=0.082  Sum_probs=43.6

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCC--CCcCcccc--CCcEEEEEe-CCCeeEEEEEEEc------Ce----eccCCCCCe
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWE--NVDPLWRL--GKDFVIMKM-LPSGVYHYRFIVD------EC----LRYAPDVPW  159 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~--~~ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiVD------G~----W~~Dp~~P~  159 (227)
                      -|+|+ |...|++|.|....++|.  ..++|.+.  .+.|++.+. +..|. .|+|.|+      |+    .+.||..-.
T Consensus       136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a  214 (898)
T TIGR02103       136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS  214 (898)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence            45665 999999999996665553  23689885  579999985 44555 3677665      53    367776543


Q ss_pred             e
Q 027175          160 E  160 (227)
Q Consensus       160 ~  160 (227)
                      .
T Consensus       215 l  215 (898)
T TIGR02103       215 L  215 (898)
T ss_pred             E
Confidence            3

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=86.59  E-value=2  Score=32.20  Aligned_cols=60  Identities=28%  Similarity=0.302  Sum_probs=40.8

Q ss_pred             CcceEEEEEecCCC---ceEEEEecC-CCCCCCcCcccc-CCcEEEEEeCCCeeEEEEEEE-c-CeeccC
Q 027175           92 EKQVAAAITWSLGG---KQVAVTGSW-DNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIV-D-ECLRYA  154 (227)
Q Consensus        92 ~~~vpv~f~W~~ga---keV~V~GSF-nnW~~~ipL~ks-~~~f~~~l~Lp~G~Y~YKFiV-D-G~W~~D  154 (227)
                      ..-..+.|...+|+   ..|.|.++= .+|.   +|.|+ +..|.+.-.++.|-+.+|+.. | |+++..
T Consensus        11 ~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~   77 (82)
T PF01357_consen   11 PYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA   77 (82)
T ss_dssp             TTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred             CcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence            34467778887654   578898433 5585   59998 569998878888899999988 7 887764

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=83.15  E-value=4.2  Score=33.47  Aligned_cols=51  Identities=18%  Similarity=0.156  Sum_probs=37.4

Q ss_pred             cceEEEEEecCC-CceEEEEecCCCCCCCcCcc-ccCCcEEEEEeCCCeeEEEEE
Q 027175           93 KQVAAAITWSLG-GKQVAVTGSWDNWENVDPLW-RLGKDFVIMKMLPSGVYHYRF  145 (227)
Q Consensus        93 ~~vpv~f~W~~g-akeV~V~GSFnnW~~~ipL~-ks~~~f~~~l~Lp~G~Y~YKF  145 (227)
                      .+-.|+|+|... +.+|...++.+-|... .+. +-+..|+.++.- +|.|.|+=
T Consensus        60 pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~~~s~~~Tfe~-~G~Y~Y~C  112 (128)
T COG3794          60 PGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGINESFTHTFET-PGEYTYYC  112 (128)
T ss_pred             CCCEEEEEECCCCCceEEEeCCCCccccc-ccccCCCcceEEEecc-cceEEEEe
Confidence            456789999997 9999999999655542 233 224578888875 89999863

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=81.95  E-value=4.3  Score=44.27  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=41.2

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC----cCcc-ccCCcEEEEEe-CCCeeEEEEEEEcCee
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV----DPLW-RLGKDFVIMKM-LPSGVYHYRFIVDECL  151 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~----ipL~-ks~~~f~~~l~-Lp~G~Y~YKFiVDG~W  151 (227)
                      -|.|+ |...|+.|.|+ -|+.|...    ++|. +.++.|.+.+. +.+|. .|+|.|+|.+
T Consensus        24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~   84 (1221)
T PRK14510         24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG   84 (1221)
T ss_pred             eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence            36775 88899999997 88888642    4664 45678988765 77887 6999999854

>PLN02877 alpha-amylase/limit dextrinase

Probab=80.52  E-value=4  Score=43.59  Aligned_cols=51  Identities=16%  Similarity=0.204  Sum_probs=35.4

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCC-----CcCccccCCcEEEEEeC-CCeeEEEEEEEc
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWEN-----VDPLWRLGKDFVIMKML-PSGVYHYRFIVD  148 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~-----~ipL~ks~~~f~~~l~L-p~G~Y~YKFiVD  148 (227)
                      -|.|+ |...|++|.|.- |++|..     .++|.+.+++|++.+.- ..| +.|+|.|+
T Consensus       223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G-~~Y~Y~V~  280 (970)
T PLN02877        223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEG-CYYVYEVS  280 (970)
T ss_pred             CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCC-CeeEEEEe
Confidence            45664 999999999984 555532     24677667899998863 345 44777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		4e-08
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		8e-07
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		2e-06
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		3e-06

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 97  AAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPD 156
             I WS GGK+V ++GS++NW    PL +   DFV +  LP G + Y+F VD    + P 
Sbjct: 12  TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 71
Query: 157 VPWECDDSGNAYNVLDLQPA 176
            P      G   N++ ++ +
Sbjct: 72  EPVVTSQLGTINNLIHVKKS 91

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 101 WSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWE 160
           W+ GGK+V ++GS++NW  + PL R   +FV +  LP G + Y+F VD    + P  P  
Sbjct: 17  WTGGGKEVYLSGSFNNWSKL-PLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIV 75
Query: 161 CDDSGNAYNVLDLQ 174
               G   N++ ++
Sbjct: 76  TSQLGTVNNIIQVK 89

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 95  VAAAITWSLGGKQVAVTGSWDNWENVDPLW----RLGKDFVIMKMLPSGVYHYRFIVDEC 150
           V   I W  GG +V VTGS+  W  +  L       G   V +++LP G + +RFIVD  
Sbjct: 4   VPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLP-GTHRFRFIVDNE 62
Query: 151 LRYAPDVPWECDDSGNAYNVLDLQ 174
           LR +  +P   D  GN  N ++++
Sbjct: 63  LRVSDFLPTATDQMGNFVNYIEVR 86

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 WSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWE 160
           W+ GGK+V ++GS++NW  + P  R   +FV +  LP G + Y+F VD    + P  P  
Sbjct: 17  WTGGGKEVYLSGSFNNWSKL-PXTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIV 75
Query: 161 CDDSGNAYNVLDLQ 174
               G   N++ ++
Sbjct: 76  TSQLGTVNNIIQVK 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	4e-21
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	5e-21
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	8e-14
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	2e-04

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 83.4 bits (206), Expect = 4e-21
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 92  EKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECL 151
            +       W+ GGK+V ++GS++NW  + P+ R   +FV +  LP G + Y+F VD   
Sbjct: 8   AQARPTVFRWTGGGKEVYLSGSFNNWSKL-PMTRSQNNFVAILDLPEGEHQYKFFVDGQW 66

Query: 152 RYAPDVPWECDDSGNAYNVLDLQP 175
            + P  P      G   N++ ++ 
Sbjct: 67  THDPSEPIVTSQLGTVNNIIQVKK 90

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 87.4 bits (215), Expect = 5e-21
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 99  ITWSLGGKQVAVTGSWDNWENVDPLWRLGK---DFVIMKMLPSGVYHYRFIVDECLRYAP 155
           I W  GG +V VTGS+  W  +  L         F +   L  G + +RFIVD  LR + 
Sbjct: 8   IRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSD 67

Query: 156 DVPWECDDSGNAYNVLDLQP 175
            +P   D  GN  N ++++ 
Sbjct: 68  FLPTATDQMGNFVNYIEVRQ 87

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 68.3 bits (166), Expect = 8e-14
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 71  LMQVRNHAAERSMAYYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKD- 129
                   A R+         +++         G  +V ++G    W    PL       
Sbjct: 147 RSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKGTG 206

Query: 130 -FVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDS-GNAYNVLDLQ--PAGCLGEKRER 185
            +++ + LP G + Y++I+D    +    P+   +  G+  N   +   P    G  RER
Sbjct: 207 FWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVDGTTRER 266

Query: 186 EREREREMNGADRAT 200
               + E+   +R+ 
Sbjct: 267 LSSEDPELLEEERSK 281

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 92  EKQVAAAITWSLGGKQVAVTGSWDNW-ENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDEC 150
              V     W    K + + G + +       L ++ +  ++   L  G Y Y F +D  
Sbjct: 17  RYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEEQGIVYLKLWPGEYGYGFQIDND 76

Query: 151 LRYAPD 156
                D
Sbjct: 77  FENVLD 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.94
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.91
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.9
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.62
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.3
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.32
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.14
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.86
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.59
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.47
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.43
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	96.31
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	96.16
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	96.16
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	96.07
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	95.96
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	95.94
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	95.9
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	95.87
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	95.6
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.48
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.39
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.16
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.08
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	94.79
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	94.5
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.48
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	93.97
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	93.89
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	93.57
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	93.45
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	92.97
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	92.52
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	91.88
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	91.87
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	90.32
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	89.77

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.94  E-value=5.3e-27  Score=179.63  Aligned_cols=90  Identities=28%  Similarity=0.534  Sum_probs=79.0

Q ss_pred             hcccccCcceEEEEEecCCCceEEEEecCCCCCCCcCccccCCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCeeeCCCC
Q 027175           86 YEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSG  165 (227)
Q Consensus        86 ~~~~~~~~~vpv~f~W~~gakeV~V~GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G  165 (227)
                      .+++|++++++|+|+|..+|++|+|+|+||+|+ +++|+|+++.|++++.|++|.|+|||+|||+|++||.+|++.|+.|
T Consensus         2 ~~~~~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G   80 (96)
T 1z0n_A            2 VNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLG   80 (96)
T ss_dssp             --------CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTS
T ss_pred             CcccCCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEECCCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCC
Confidence            356788999999999999999999999999999 7999998889999999999999999999999999999999999999


Q ss_pred             CeeEEEEcCCC
Q 027175          166 NAYNVLDLQPA  176 (227)
Q Consensus       166 ~~NNvL~V~d~  176 (227)
                      +.||+|.|...
T Consensus        81 ~~Nnvi~V~~~   91 (96)
T 1z0n_A           81 TVNNIIQVKKT   91 (96)
T ss_dssp             CEEEEEEECSC
T ss_pred             CEeEEEEEcCC
Confidence            99999999853

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.91  E-value=1.7e-24  Score=191.72  Aligned_cols=84  Identities=32%  Similarity=0.515  Sum_probs=78.7

Q ss_pred             cceEEEEEecCCCceEEEEecCCCCCCCcCcccc---CCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeE
Q 027175           93 KQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRL---GKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYN  169 (227)
Q Consensus        93 ~~vpv~f~W~~gakeV~V~GSFnnW~~~ipL~ks---~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NN  169 (227)
                      ..+||+|+|.++|++|+|+|+|++|+.+++|+|.   ++.|++++.|++|.|+|||+|||+|++|+++|++.|+.|++||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            4689999999999999999999999988899984   3589999999999999999999999999999999999999999


Q ss_pred             EEEcCCC
Q 027175          170 VLDLQPA  176 (227)
Q Consensus       170 vL~V~d~  176 (227)
                      +|.|.+.
T Consensus        82 vi~V~~~   88 (252)
T 2qlv_B           82 YIEVRQP   88 (252)
T ss_dssp             EEEECC-
T ss_pred             eeeccCc
Confidence            9999974

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.90  E-value=7.2e-24  Score=189.63  Aligned_cols=84  Identities=20%  Similarity=0.311  Sum_probs=78.3

Q ss_pred             CcceEEEEEecC-CCceEEEEecCCCCCCCcCccc--cCCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCee-eCCCCCe
Q 027175           92 EKQVAAAITWSL-GGKQVAVTGSWDNWENVDPLWR--LGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWE-CDDSGNA  167 (227)
Q Consensus        92 ~~~vpv~f~W~~-gakeV~V~GSFnnW~~~ipL~k--s~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~-~D~~G~~  167 (227)
                      -...||+|+|.. +|++|+|+||||||+.+++|+|  +++.|++++.||+|.|+|||+|||+|++||++|.+ .|+.|++
T Consensus       167 ~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~  246 (294)
T 3nme_A          167 LKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHT  246 (294)
T ss_dssp             CCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECTTTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSCC
T ss_pred             cccccceeeeccCCCCEEEEEEeccCCCCcccceEcCCCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCCE
Confidence            355899999999 8999999999999998899999  46799999999999999999999999999999976 7899999


Q ss_pred             eEEEEcCC
Q 027175          168 YNVLDLQP  175 (227)
Q Consensus       168 NNvL~V~d  175 (227)
                      ||+|.|.+
T Consensus       247 nn~~~v~~  254 (294)
T 3nme_A          247 NNYAKVVD  254 (294)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEECC
Confidence            99999997

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.62  E-value=7.1e-16  Score=151.04  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             cceEEEEEecC--CCceEEEEecCCCCCC-CcCccccCCcEEEEEeCCCeeEEEEEEEcCeec--cCCCCCe---eeCCC
Q 027175           93 KQVAAAITWSL--GGKQVAVTGSWDNWEN-VDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLR--YAPDVPW---ECDDS  164 (227)
Q Consensus        93 ~~vpv~f~W~~--gakeV~V~GSFnnW~~-~ipL~ks~~~f~~~l~Lp~G~Y~YKFiVDG~W~--~Dp~~P~---~~D~~  164 (227)
                      ..++|+|++..  +|++|+|+||||+|+. ..+|+|+++.|++++.||+|+|+|||+|||+|+  +||++|.   +.|.+
T Consensus        16 ~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y~~~~~   95 (696)
T 4aee_A           16 GRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKKCVHTSF   95 (696)
T ss_dssp             EEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEETTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEEEEECSS
T ss_pred             CcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEecCCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCcccccccCC
Confidence            45677777665  7999999999999975 479999999999999999999999999999999  8888873   55889


Q ss_pred             CCeeEEE
Q 027175          165 GNAYNVL  171 (227)
Q Consensus       165 G~~NNvL  171 (227)
                      |..|++.
T Consensus        96 g~~n~~~  102 (696)
T 4aee_A           96 FPEYKKC  102 (696)
T ss_dssp             CTTSEEE
T ss_pred             cccccee
Confidence            9999884

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.30  E-value=4e-12  Score=123.07  Aligned_cols=68  Identities=24%  Similarity=0.413  Sum_probs=60.8

Q ss_pred             cceEEEEEecCCCceEEEEecCCCCCCC-cCccccCCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCee
Q 027175           93 KQVAAAITWSLGGKQVAVTGSWDNWENV-DPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWE  160 (227)
Q Consensus        93 ~~vpv~f~W~~gakeV~V~GSFnnW~~~-ipL~ks~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~  160 (227)
                      +..-|.|.|+.+|+.|+|+|+||+|... .+|++.++.|.+++.||+|+|+|||+|||+|+.||.+|..
T Consensus        15 ~~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~   83 (645)
T 4aef_A           15 RVAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQEGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPER   83 (645)
T ss_dssp             EEEEEEEEEECCSSCEEEEETTTTTCTTSSEEEECSSEEEEEEEECSEEEEEEEEETTEEECCTTCCCE
T ss_pred             eEEEEEEecCCCCeEEEEEEcCCCCCCCcccceEcCCEEEEEEEeCCceEEEEEEECCeEecCCCCCCc
Confidence            3456778899999999999999999864 5898988999999999999999999999999999999854

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.32  E-value=1.4e-06  Score=69.59  Aligned_cols=55  Identities=24%  Similarity=0.311  Sum_probs=45.7

Q ss_pred             cceEEEEEecC---CCceEEEEec---CCCCCCC--cCcccc----C-CcEEEEEeCCCee-EEEEEEE
Q 027175           93 KQVAAAITWSL---GGKQVAVTGS---WDNWENV--DPLWRL----G-KDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~---gakeV~V~GS---FnnW~~~--ipL~ks----~-~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      ..+.|+|+-..   .+..|+|+|+   +.+|+..  ++|.+.    . ..|++++.||.|. ++|||++
T Consensus         7 ~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            7 GPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            45778888765   4789999999   8999973  589876    3 4899999999985 9999999

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.14  E-value=9.3e-06  Score=74.12  Aligned_cols=87  Identities=21%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             cceEEEEEecC-CC-------ceEEEE--ecCCCC--CCCcCcccc--CCcEEEEEeCCCeeE-EEEEEEc---------
Q 027175           93 KQVAAAITWSL-GG-------KQVAVT--GSWDNW--ENVDPLWRL--GKDFVIMKMLPSGVY-HYRFIVD---------  148 (227)
Q Consensus        93 ~~vpv~f~W~~-ga-------keV~V~--GSFnnW--~~~ipL~ks--~~~f~~~l~Lp~G~Y-~YKFiVD---------  148 (227)
                      ....|+|.|.. .|       ++|+|.  |..+..  -...+|+|.  .+.|+.++.||++.| .|+|+||         
T Consensus        29 ~~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~~~~m~r~~~~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~~  108 (403)
T 3c8d_A           29 EMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIFSAP  108 (403)
T ss_dssp             SEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTTSSEEEEEEEEETTCEEEEEEEEESCCSTTCCC
T ss_pred             CcEEEEEEeeCCCcccccCccceEEEECcCCCccccccCccccccCCCCCeEEEEEEECCCcEEEEEEEecCcccccccc
Confidence            35689999987 45       799998  433321  122479993  358999999999999 9999999         


Q ss_pred             ---------------CeeccCCCCCeeeCC-CCCeeEEEEcCCCccc
Q 027175          149 ---------------ECLRYAPDVPWECDD-SGNAYNVLDLQPAGCL  179 (227)
Q Consensus       149 ---------------G~W~~Dp~~P~~~D~-~G~~NNvL~V~d~~~~  179 (227)
                                     |..+.||.+|..... .|...|+|++.+..+.
T Consensus       109 ~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~~  155 (403)
T 3c8d_A          109 SPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPLQ  155 (403)
T ss_dssp             --CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCCC
T ss_pred             cchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCcC
Confidence                           788999999977644 4888999999975443

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.86  E-value=1e-05  Score=61.86  Aligned_cols=55  Identities=25%  Similarity=0.436  Sum_probs=44.4

Q ss_pred             cceEEEEEecC---CCceEEEEecC---CCCCC--CcCcccc-----CCcEEEEEeCCCee-EEEEEEE
Q 027175           93 KQVAAAITWSL---GGKQVAVTGSW---DNWEN--VDPLWRL-----GKDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~---gakeV~V~GSF---nnW~~--~ipL~ks-----~~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      ..+.++|.-..   .|..|+|+||.   .+|+.  .++|...     +..|++++.||.|. ++|||+|
T Consensus         5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v   73 (108)
T 1ac0_A            5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEE
T ss_pred             CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEE
Confidence            44677787665   47899999985   58986  3589876     25899999999985 9999999

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.59  E-value=0.00017  Score=69.75  Aligned_cols=64  Identities=16%  Similarity=0.397  Sum_probs=50.0

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCC-CcCccc--cCCcEEEEEe-CCCeeEEEEEEE---cCee--ccCCCCCee
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWEN-VDPLWR--LGKDFVIMKM-LPSGVYHYRFIV---DECL--RYAPDVPWE  160 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~-~ipL~k--s~~~f~~~l~-Lp~G~Y~YKFiV---DG~W--~~Dp~~P~~  160 (227)
                      -|+|+ |...|++|.|+|+|++|.. .++|++  .++.|++.+. +.+|.+ |+|.|   ||++  +.||-....
T Consensus        26 gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~DPya~~~   99 (617)
T 1m7x_A           26 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKSDPYAFEA   99 (617)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEECCTTCSSE
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCCceeEeEECCCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEecCccceee
Confidence            46775 9999999999999999975 469986  3579999987 778874 99998   6765  566655443

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.47  E-value=0.00019  Score=71.48  Aligned_cols=63  Identities=22%  Similarity=0.451  Sum_probs=48.9

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCcccc--CCcEEEEEe-CCCeeEEEEEEE---cCee--ccCCCCCe
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSGVYHYRFIV---DECL--RYAPDVPW  159 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks--~~~f~~~l~-Lp~G~Y~YKFiV---DG~W--~~Dp~~P~  159 (227)
                      -|.|+ |...|+.|.|+|+||+|+.+ .+|.+.  .+.|++.++ +.+|. .|||.|   ||++  +.||-...
T Consensus       137 g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~  209 (722)
T 3k1d_A          137 GVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFG  209 (722)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECGGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSS
T ss_pred             eEEEEEECCCCCEEEEEeecCCCCCCcccCEEcCCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeeccccee
Confidence            36675 99999999999999999864 699874  379999986 88885 588888   5654  56765543

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.43  E-value=0.00022  Score=71.16  Aligned_cols=61  Identities=15%  Similarity=0.326  Sum_probs=47.7

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCC-cCccccC-CcEEEEEe-------CCCeeEEEEEEEc---Cee--ccCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRLG-KDFVIMKM-------LPSGVYHYRFIVD---ECL--RYAPDV  157 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~-ipL~ks~-~~f~~~l~-------Lp~G~Y~YKFiVD---G~W--~~Dp~~  157 (227)
                      -|.|+ |...|++|.|+|+||+|... ++|.|.. +.|++.++       +++|.+ |||.|+   |+|  +.||-.
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya  141 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWI  141 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEECTTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTC
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeCCCCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcch
Confidence            36675 99999999999999999754 7999864 69999998       788874 888886   455  346644

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=96.31  E-value=0.0029  Score=60.36  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEEe-CCCeeEEEEEEEcCe-eccCCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKM-LPSGVYHYRFIVDEC-LRYAPDVP  158 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~-Lp~G~Y~YKFiVDG~-W~~Dp~~P  158 (227)
                      -|.|+ |...|+.|.|++.++   ..++|.+.. +.|++.+. +.+|. .|||.|||. .+.||...
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~   72 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERDEKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASR   72 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEECTTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCS
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccCCCCEEEEEECCCCCCC-EEEEEEeCCccccCcchh
Confidence            35665 999999999999987   558999864 68999987 88885 699999996 67777543

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=96.16  E-value=0.0057  Score=59.09  Aligned_cols=59  Identities=19%  Similarity=0.282  Sum_probs=47.1

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCCcCcccc-CCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCe
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPW  159 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~ipL~ks-~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~  159 (227)
                      -|.|+ |...|+.|.|+++   . ..++|.+. ++.|++.+.+.+|.+ |+|.|||..+.||....
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~   95 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSLGGGIYELELPVGPGAR-YLFVLDGVPTPDPYARF   95 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEEETTEEEEEESCCTTCE-EEEEETTEEECCTTCSC
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeCCCcEEEEEEECCCCcE-EEEEECCeEecCCCccc
Confidence            46675 9999999999994   2 35799985 568999999888986 99999997677776544

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=96.16  E-value=0.0031  Score=62.51  Aligned_cols=54  Identities=7%  Similarity=-0.012  Sum_probs=43.8

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCC-----CcCcccc-CCcEEEEEe-CC------CeeEEEEEEEcCee
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWEN-----VDPLWRL-GKDFVIMKM-LP------SGVYHYRFIVDECL  151 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~-----~ipL~ks-~~~f~~~l~-Lp------~G~Y~YKFiVDG~W  151 (227)
                      |.|+ |...|++|.|++ |+.|..     +++|.+. ++.|++.+. +.      +|.|.|+|.|+|.+
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~~   85 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVYYGYRAWGPN   85 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCEEEEEEEBTT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccCCCCEEEEEECCcccccccCCCCEEEEEEEEeee
Confidence            6675 999999999998 887653     4688875 469999886 66      89999999999864

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=96.07  E-value=0.0099  Score=57.92  Aligned_cols=52  Identities=17%  Similarity=0.107  Sum_probs=42.0

Q ss_pred             EEEE-ecCCCceEEEEecCCCCC--CCcCccc-cCCcEEEEEe-CCCeeEEEEEEEcCe
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWE--NVDPLWR-LGKDFVIMKM-LPSGVYHYRFIVDEC  150 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~--~~ipL~k-s~~~f~~~l~-Lp~G~Y~YKFiVDG~  150 (227)
                      |.|+ |...|++|.|++ |+++.  .+++|.+ .++.|.+.+. +.+|.+ |+|.|+|.
T Consensus        21 ~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           21 VNFTLFSAHAERVELCV-FDANGQEHRYDLPGHSGDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             EEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCCCCEEEEEECCCCCCCE-EEEEEeee
Confidence            6675 999999999999 88765  3578975 4679999885 778886 99999983

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=95.96  E-value=0.0096  Score=58.72  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCC-----CCcCcccc-CCcEEEEEe-CCCeeEEEEEEEcCe
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWE-----NVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDEC  150 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~-----~~ipL~ks-~~~f~~~l~-Lp~G~Y~YKFiVDG~  150 (227)
                      -|.|+ |...|++|.|++ |+.+.     .+++|.+. ++.|.+.+. +.+|.+ |+|.|+|.
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~v~g~   90 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKTGDIWHVFVPGLRPGQL-YAYRVYGP   90 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEESSSEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCCCCEEEEEeCCCCCCCE-EEEEEeee
Confidence            36675 999999999999 87643     24688864 578999885 788987 99999985

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=95.94  E-value=0.012  Score=56.24  Aligned_cols=56  Identities=11%  Similarity=0.029  Sum_probs=44.2

Q ss_pred             cceEEEE-EecCCCceEEE-EecCCCCCC----CcCccccC--C---cEEEEEeCCCeeEEEEEEEc
Q 027175           93 KQVAAAI-TWSLGGKQVAV-TGSWDNWEN----VDPLWRLG--K---DFVIMKMLPSGVYHYRFIVD  148 (227)
Q Consensus        93 ~~vpv~f-~W~~gakeV~V-~GSFnnW~~----~ipL~ks~--~---~f~~~l~Lp~G~Y~YKFiVD  148 (227)
                      ..+.++| +|...+++|.| .|+|++|+.    .++|+|..  +   .|++.+......+.|||.|.
T Consensus        21 ~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           21 TQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             TEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            4456666 48888999999 899999975    46899742  2   59999988777789999984

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=95.90  E-value=0.017  Score=44.62  Aligned_cols=60  Identities=12%  Similarity=0.044  Sum_probs=46.9

Q ss_pred             ceEEEEEecCCCceEEEEecCC--CCCCC--cCccccC-CcE-EEEEeCCCe-eEEEEEEEcCe--eccC
Q 027175           94 QVAAAITWSLGGKQVAVTGSWD--NWENV--DPLWRLG-KDF-VIMKMLPSG-VYHYRFIVDEC--LRYA  154 (227)
Q Consensus        94 ~vpv~f~W~~gakeV~V~GSFn--nW~~~--ipL~ks~-~~f-~~~l~Lp~G-~Y~YKFiVDG~--W~~D  154 (227)
                      ...++|.|..++++|+|...+.  +|+..  ++|.+.. ..| ++++.|+.| .++|+|. ||.  |-.+
T Consensus         4 g~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn   72 (104)
T 2laa_A            4 GNKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAEISGYAKITVDIGSASQLEAAFN-DGNNNWDSN   72 (104)
T ss_dssp             CCEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEETTTTEEEEEEECTTCSCEEEEEE-CSSSCEEST
T ss_pred             CCEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccccCCCeEEEEEECCCCCEEEEEEe-CCCCcCcCC
Confidence            3467788888999999998885  89864  5898876 578 599999976 6999995 874  5443

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=95.87  E-value=0.017  Score=56.34  Aligned_cols=56  Identities=23%  Similarity=0.498  Sum_probs=44.8

Q ss_pred             CcceEEEEEecC-----CCceEEEEecCC---CCCC--------Cc-CccccC-CcEEEEEeCCCee-EEEEEEE
Q 027175           92 EKQVAAAITWSL-----GGKQVAVTGSWD---NWEN--------VD-PLWRLG-KDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        92 ~~~vpv~f~W~~-----gakeV~V~GSFn---nW~~--------~i-pL~ks~-~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      ...+.|+|+-.+     -|..|+|+|+-.   +|+.        .+ +|.... ..|++++.||.|. ++|||+|
T Consensus       579 ~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~~~~W~~~v~l~~~~~~eyKy~~  653 (686)
T 1qho_A          579 GTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI  653 (686)
T ss_dssp             SSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCCCCcEEEEEEeCCCCeEEEEEEE
Confidence            356788888765     378999999975   8987        34 777654 5899999999985 9999998

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=95.60  E-value=0.012  Score=56.12  Aligned_cols=57  Identities=16%  Similarity=0.278  Sum_probs=44.9

Q ss_pred             CcceEEEEE-ecCCCceEEE-EecCCCCCC------CcCccccC-----CcEEEEEeCCCeeEEEEEEEc
Q 027175           92 EKQVAAAIT-WSLGGKQVAV-TGSWDNWEN------VDPLWRLG-----KDFVIMKMLPSGVYHYRFIVD  148 (227)
Q Consensus        92 ~~~vpv~f~-W~~gakeV~V-~GSFnnW~~------~ipL~ks~-----~~f~~~l~Lp~G~Y~YKFiVD  148 (227)
                      ...+.++|+ |...+++|.| .|+|++|..      .++|+|.+     +.|++.+......+.|||.|+
T Consensus        20 ~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           20 SETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             CCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            455677764 8889999999 799999964      47998742     259999988777788999885

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.48  E-value=0.025  Score=55.03  Aligned_cols=55  Identities=24%  Similarity=0.305  Sum_probs=44.6

Q ss_pred             cceEEEEEecC---CCceEEEEecCC---CCCCC--cCccccC-----CcEEEEEeCCCee-EEEEEEE
Q 027175           93 KQVAAAITWSL---GGKQVAVTGSWD---NWENV--DPLWRLG-----KDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~---gakeV~V~GSFn---nW~~~--ipL~ks~-----~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      ..+.|+|+-.+   -|..|+|+|+-.   +|+..  ++|...+     ..|++++.||.|. ++|||+|
T Consensus       495 ~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          495 TSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             SEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            34778887765   488999999875   89864  5888765     6899999999985 9999998

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.39  E-value=0.027  Score=54.77  Aligned_cols=55  Identities=22%  Similarity=0.456  Sum_probs=44.8

Q ss_pred             cceEEEEEecC----CCceEEEEecCC---CCCC--Cc-Cccc---c-CCcEEEEEeCCCe-eEEEEEEE
Q 027175           93 KQVAAAITWSL----GGKQVAVTGSWD---NWEN--VD-PLWR---L-GKDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~----gakeV~V~GSFn---nW~~--~i-pL~k---s-~~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      ..++|+|+-..    .+..|+|+||-.   +|+.  .+ +|..   . ...|++++.||.| .++|||++
T Consensus       582 ~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          582 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            46888888755    478999999976   9985  35 7876   4 4589999999988 59999998

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.16  E-value=0.037  Score=53.86  Aligned_cols=55  Identities=22%  Similarity=0.446  Sum_probs=44.4

Q ss_pred             cceEEEEEecC----CCceEEEEecCC---CCCCC--c-Cccc---c-CCcEEEEEeCCCe-eEEEEEEE
Q 027175           93 KQVAAAITWSL----GGKQVAVTGSWD---NWENV--D-PLWR---L-GKDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~----gakeV~V~GSFn---nW~~~--i-pL~k---s-~~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      ..++|+|+-..    .+..|+|+||-.   +|+..  + +|..   . ...|++++.||.| .++|||++
T Consensus       578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            46888888754    478999999876   89864  5 6776   4 3589999999988 59999998

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.08  E-value=0.039  Score=53.68  Aligned_cols=55  Identities=24%  Similarity=0.468  Sum_probs=44.2

Q ss_pred             cceEEEEEecC----CCceEEEEecCC---CCCCC--c-Cccc---c-CCcEEEEEeCCCe-eEEEEEEE
Q 027175           93 KQVAAAITWSL----GGKQVAVTGSWD---NWENV--D-PLWR---L-GKDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~----gakeV~V~GSFn---nW~~~--i-pL~k---s-~~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      ..++|+|+-..    .|..|+|+||-.   +|+..  + +|..   . ...|++++.||.| .++|||++
T Consensus       585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            46888888754    478999999876   89864  4 6776   4 3589999999988 59999998

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=94.79  E-value=0.039  Score=54.20  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=45.5

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCC-CcCccccC-CcEEEEEe-CCCeeEEEEEEEc--Cee--ccCCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWEN-VDPLWRLG-KDFVIMKM-LPSGVYHYRFIVD--ECL--RYAPDVP  158 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~-~ipL~ks~-~~f~~~l~-Lp~G~Y~YKFiVD--G~W--~~Dp~~P  158 (227)
                      -|.|+ |...|+.|.|++.+++|.. .++|.+.. +.|++.+. +.+|. .|+|.|+  |.|  +.||...
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DPya~  183 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLEKGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQYAK  183 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEECGGGEEEEEEESCCTTC-EEEEEEEETTEEEEECCTTCS
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccCCCCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCCccc
Confidence            46675 9999999999999998864 36899864 68999887 45664 5666665  764  5566543

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=94.50  E-value=0.038  Score=57.31  Aligned_cols=62  Identities=18%  Similarity=0.204  Sum_probs=46.4

Q ss_pred             EEEEE-ecCCCceEEEEe-cCCCCCC-CcCccc--cCCcEEEEEe-CCCeeEEEEEEEc------Ce----eccCCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTG-SWDNWEN-VDPLWR--LGKDFVIMKM-LPSGVYHYRFIVD------EC----LRYAPDVP  158 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~G-SFnnW~~-~ipL~k--s~~~f~~~l~-Lp~G~Y~YKFiVD------G~----W~~Dp~~P  158 (227)
                      -|.|+ |...|+.|.|++ +|++|.. .++|.+  ..+.|++.+. +.+|.+ |+|.|+      |.    .+.||...
T Consensus       305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~  382 (1083)
T 2fhf_A          305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAH  382 (1083)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCccceEECeECCCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccc
Confidence            36676 999999999999 9999975 478985  3579999875 677875 777775      32    46676554

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.48  E-value=0.062  Score=51.42  Aligned_cols=56  Identities=20%  Similarity=0.320  Sum_probs=44.0

Q ss_pred             CcceEEEEEecC----CCceEEEEecCC---CCCCCc---Cccc-cCC-cEEEEEeCCCee-EEEEEEE
Q 027175           92 EKQVAAAITWSL----GGKQVAVTGSWD---NWENVD---PLWR-LGK-DFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        92 ~~~vpv~f~W~~----gakeV~V~GSFn---nW~~~i---pL~k-s~~-~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      ...+.|+|+-.+    -|.+|+|+||-.   +|+...   +|.. ... .|++++.||.|. ++|||+|
T Consensus       417 ~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          417 VTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             CCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             cCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCCCCCEEEEEEEECCCCcEEEEEEE
Confidence            446888888654    489999999864   898753   5665 344 999999999885 9999998

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=93.97  E-value=0.061  Score=52.69  Aligned_cols=52  Identities=13%  Similarity=0.011  Sum_probs=39.0

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCCC---cCccccCCcEEEEEe-CCCeeEEEEEEEcC
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWENV---DPLWRLGKDFVIMKM-LPSGVYHYRFIVDE  149 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~~---ipL~ks~~~f~~~l~-Lp~G~Y~YKFiVDG  149 (227)
                      |.|+ |...|++|.|++-+++|...   +.|.+.++.|++.+. +.+|. .|+|.|++
T Consensus       138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~~~g~W~~~~~~~~~g~-~Y~y~v~~  194 (884)
T 4aio_A          138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENR-YYLYEVDV  194 (884)
T ss_dssp             EEEEEECTTCSEEEEEEESTTTSCEEEEEECEEETTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCeeeeeeecCCCCEEEEEECCCCCCC-EEEEEEeC
Confidence            6786 99999999999965556543   244556789999986 56675 48888875

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=93.89  E-value=0.092  Score=50.95  Aligned_cols=59  Identities=15%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEE-eCCCeeEEEEEEEc-CeeccCCCCCee
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMK-MLPSGVYHYRFIVD-ECLRYAPDVPWE  160 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l-~Lp~G~Y~YKFiVD-G~W~~Dp~~P~~  160 (227)
                      |.|+ |...|++|.|++   +|. ..+|+|.+ +.|++.+ .+.+|. .|||.|+ |..+.||.....
T Consensus        44 ~~F~vwap~a~~v~l~~---~~~-~~~m~~~~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~  106 (618)
T 3m07_A           44 VRFRLWATGQQKVMLRL---AGK-DQEMQANGDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQ  106 (618)
T ss_dssp             EEEEEECTTCSCEEEEE---TTE-EEECEECSTTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCB
T ss_pred             EEEEEECCCCCEEEEEE---CCC-cccCeecCCEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceee
Confidence            5676 999999999998   354 37899864 5888877 477786 5899995 567888865443

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=93.57  E-value=0.099  Score=51.29  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             EEEE-ecCCCceEEEEe-cCCCCCC---CcCcccc-CCcEEEEEeCC--Ce-----eEEEEEEEc--Ce--eccCCCCC
Q 027175           97 AAIT-WSLGGKQVAVTG-SWDNWEN---VDPLWRL-GKDFVIMKMLP--SG-----VYHYRFIVD--EC--LRYAPDVP  158 (227)
Q Consensus        97 v~f~-W~~gakeV~V~G-SFnnW~~---~ipL~ks-~~~f~~~l~Lp--~G-----~Y~YKFiVD--G~--W~~Dp~~P  158 (227)
                      |.|+ |...|+.|.|++ ++++|..   +++|.+. ++.|++.+.-.  +|     -+.|+|.|+  |.  .+.||...
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya~  104 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAK  104 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCCCCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCcee
Confidence            6675 999999999999 8888863   5789875 46899988631  34     167888886  53  45677554

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=93.45  E-value=0.043  Score=55.73  Aligned_cols=62  Identities=18%  Similarity=0.251  Sum_probs=46.8

Q ss_pred             EEEE-ecCCCceEEEEe-cCCCCCC---CcCcccc-CCcEEEEEeCCCee-----EEEEEEEcC----eeccCCCCC
Q 027175           97 AAIT-WSLGGKQVAVTG-SWDNWEN---VDPLWRL-GKDFVIMKMLPSGV-----YHYRFIVDE----CLRYAPDVP  158 (227)
Q Consensus        97 v~f~-W~~gakeV~V~G-SFnnW~~---~ipL~ks-~~~f~~~l~Lp~G~-----Y~YKFiVDG----~W~~Dp~~P  158 (227)
                      |.|+ |...|++|.|++ ++++|..   +++|.+. ++.|++.+.+.+|.     +.|+|.|++    ..+.||...
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~  222 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNNKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAK  222 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECTTSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccCCCCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCccce
Confidence            6776 999999999998 7888853   5799886 56999999766662     678888864    256676553

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=92.97  E-value=0.063  Score=51.72  Aligned_cols=54  Identities=11%  Similarity=0.071  Sum_probs=39.6

Q ss_pred             EEEEE-e----cCCCceEEEEecCCCCCCCcCccc--c-----CCcEEEEEeCCCeeEEEEEEEcC
Q 027175           96 AAAIT-W----SLGGKQVAVTGSWDNWENVDPLWR--L-----GKDFVIMKMLPSGVYHYRFIVDE  149 (227)
Q Consensus        96 pv~f~-W----~~gakeV~V~GSFnnW~~~ipL~k--s-----~~~f~~~l~Lp~G~Y~YKFiVDG  149 (227)
                      -|.|+ |    ...+++|.|++.|++=...++|.+  .     .+.|++.+........|+|.|+|
T Consensus        31 ~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           31 SVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             EEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            35565 7    567899999999874112478988  2     24799999876666789999975

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=92.52  E-value=0.13  Score=52.12  Aligned_cols=60  Identities=10%  Similarity=0.123  Sum_probs=43.1

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCC----CCcCccccC-CcEEEEEe-CCCeeEEEEEEE--cCe--eccCCCC
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWE----NVDPLWRLG-KDFVIMKM-LPSGVYHYRFIV--DEC--LRYAPDV  157 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~----~~ipL~ks~-~~f~~~l~-Lp~G~Y~YKFiV--DG~--W~~Dp~~  157 (227)
                      -|.|+ |...|+.|.|+. |++|.    ..++|.+.. +.|++.+. +.+|. .|+|.|  +|.  .+.||..
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya  396 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSDNGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYA  396 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECGGGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTC
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCCCCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCcc
Confidence            36665 999999999997 99994    347998864 68999886 55675 366666  564  3456654

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=91.88  E-value=0.046  Score=52.21  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=42.5

Q ss_pred             cceEEEE-EecCCCceEEE-EecCCCCCC---CcCccccC--C---cEEEEEeCCCeeEEEEEEEc
Q 027175           93 KQVAAAI-TWSLGGKQVAV-TGSWDNWEN---VDPLWRLG--K---DFVIMKMLPSGVYHYRFIVD  148 (227)
Q Consensus        93 ~~vpv~f-~W~~gakeV~V-~GSFnnW~~---~ipL~ks~--~---~f~~~l~Lp~G~Y~YKFiVD  148 (227)
                      ..+.++| +|...+++|.| .|+|++|..   .++|+|.+  +   .|++.+......+.|||.|.
T Consensus        21 ~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           21 TTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             SCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             CEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence            3455555 48888999999 799999975   46898742  2   59999987777788888873

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=91.87  E-value=0.03  Score=52.75  Aligned_cols=55  Identities=18%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             cceEEEEEe-cC---CCceEEEEecCC---CCCC--CcCcc-c-cCCcEEEEEeCCCee-EEEEEEE
Q 027175           93 KQVAAAITW-SL---GGKQVAVTGSWD---NWEN--VDPLW-R-LGKDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W-~~---gakeV~V~GSFn---nW~~--~ipL~-k-s~~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      ..+.|+|+- ..   -|..|+|+||-.   +|+.  .++|. . +...|++++.||.|. ++|||+|
T Consensus       429 ~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          429 ALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTSGYPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            457777775 32   478999999875   7986  36887 3 346899999999985 9999997

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=90.32  E-value=0.66  Score=47.08  Aligned_cols=60  Identities=20%  Similarity=0.406  Sum_probs=44.3

Q ss_pred             cceEEEEEecCCCceEEEEecC-------CCCCCCc---Cccc-cCCcEEEEEeCCCeeEEEEEEEcCeec
Q 027175           93 KQVAAAITWSLGGKQVAVTGSW-------DNWENVD---PLWR-LGKDFVIMKMLPSGVYHYRFIVDECLR  152 (227)
Q Consensus        93 ~~vpv~f~W~~gakeV~V~GSF-------nnW~~~i---pL~k-s~~~f~~~l~Lp~G~Y~YKFiVDG~W~  152 (227)
                      ..++|.+--......+.|.|+|       .+|++..   -|++ .++.|+.+-.||+|.|+||+.++|-|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          151 EKIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKINPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             CEECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEEETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             ccccccccccccccccccccchhhhccccccCCCCCCcceeeccCCcceeeeeccCCcceeEEEeecCccc
Confidence            3466666655566778888866       5788653   3443 356899999999999999999997773

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=89.77  E-value=0.39  Score=49.38  Aligned_cols=61  Identities=18%  Similarity=0.230  Sum_probs=43.9

Q ss_pred             EEEE-ecCCCceEEEEe-cCCCCCC---CcCcccc-CCcEEEEEeCC--Ce-----eEEEEEEEc--Ce--eccCCCC
Q 027175           97 AAIT-WSLGGKQVAVTG-SWDNWEN---VDPLWRL-GKDFVIMKMLP--SG-----VYHYRFIVD--EC--LRYAPDV  157 (227)
Q Consensus        97 v~f~-W~~gakeV~V~G-SFnnW~~---~ipL~ks-~~~f~~~l~Lp--~G-----~Y~YKFiVD--G~--W~~Dp~~  157 (227)
                      |.|+ |...|+.|.|++ ++++|..   +++|.+. ++.|++.+...  +|     -+.|+|.|+  |.  .+.||..
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa  410 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  410 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccCCCCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence            5675 999999999999 8888864   5789875 46899988642  23     256888886  43  4566643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	1e-18
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	5e-17

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 75.3 bits (185), Expect = 1e-18
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 99  ITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVP 158
             W+ GGK+V ++GS++NW  +        +FV +  LP G + Y+F VD    + P  P
Sbjct: 6   FRWTGGGKEVYLSGSFNNWSKLPMTRS-QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEP 64

Query: 159 WECDDSGNAYNVLDLQ 174
                 G   N++ ++
Sbjct: 65  IVTSQLGTVNNIIQVK 80

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 71.3 bits (174), Expect = 5e-17
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 99  ITWSLGGKQVAVTGSWDNWENVDPLWRLGKD---FVIMKMLPSGVYHYRFIVDECLRYAP 155
           I W  GG +V VTGS+  W  +  L     +   F +   L  G + +RFIVD  LR + 
Sbjct: 8   IRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSD 67

Query: 156 DVPWECDDSGNAYNVLDLQ 174
            +P   D  GN  N ++++
Sbjct: 68  FLPTATDQMGNFVNYIEVR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.96
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.95
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.47
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.29
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.59
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.54
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.43
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.35
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.29
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.15
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.16
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	94.73
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	90.78
d1od3a_	132	Putative xylanase {Clostridium stercorarium [TaxId	81.1

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.96  E-value=5.9e-29  Score=185.64  Aligned_cols=82  Identities=29%  Similarity=0.593  Sum_probs=77.8

Q ss_pred             ceEEEEEecCCCceEEEEecCCCCCCCcCccccCCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeEEEEc
Q 027175           94 QVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDL  173 (227)
Q Consensus        94 ~vpv~f~W~~gakeV~V~GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NNvL~V  173 (227)
                      ++||+|+|+++|++|+|+||||+|+. .+|.+.++.|++++.|++|.|+|||+|||+|++|+++|++.|..|+.||+|.|
T Consensus         1 ~~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~~~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnvi~V   79 (87)
T d1z0na1           1 ARPTVFRWTGGGKEVYLSGSFNNWSK-LPMTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV   79 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTCC-EECEEETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEEEeCCCCc-cccccCCCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEEEEE
Confidence            47999999999999999999999986 78889899999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 027175          174 QPA  176 (227)
Q Consensus       174 ~d~  176 (227)
                      .+.
T Consensus        80 ~~~   82 (87)
T d1z0na1          80 KKT   82 (87)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            753

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.95  E-value=9e-29  Score=183.91  Aligned_cols=83  Identities=33%  Similarity=0.520  Sum_probs=76.7

Q ss_pred             cceEEEEEecCCCceEEEEecCCCCCCCcCcccc---CCcEEEEEeCCCeeEEEEEEEcCeeccCCCCCeeeCCCCCeeE
Q 027175           93 KQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRL---GKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYN  169 (227)
Q Consensus        93 ~~vpv~f~W~~gakeV~V~GSFnnW~~~ipL~ks---~~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~D~~G~~NN  169 (227)
                      -.+||+|+|.++|++|+|+||||+|+..++|.+.   ++.|++++.|++|.|+|||+|||+|++||++|++.|+.|++||
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nn   81 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeE
Confidence            3699999999999999999999999988777653   4589999999999999999999999999999999999999999


Q ss_pred             EEEcCC
Q 027175          170 VLDLQP  175 (227)
Q Consensus       170 vL~V~d  175 (227)
                      +|+|++
T Consensus        82 vi~V~~   87 (87)
T d2qlvb1          82 YIEVRQ   87 (87)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            999974

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.47  E-value=6.3e-08  Score=72.17  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=50.6

Q ss_pred             EEEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEEeCCCeeEEEEEEEcCeeccCCCCCeee
Q 027175           96 AAAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWEC  161 (227)
Q Consensus        96 pv~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~Lp~G~Y~YKFiVDG~W~~Dp~~P~~~  161 (227)
                      -|+|+ |...|++|.|.++++.    .+|+|.+ +.|++++.+.+|.+ |||+|||.|+.||......
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~~----~~m~~~~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~   84 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGTE----HVMTSLGGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   84 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTEE----EECEEEETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEeEEEeeCCc----cCCEEccCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCC
Confidence            47786 9999999999997543    5799874 58999999999986 9999999999998765433

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.1e-06  Score=65.96  Aligned_cols=62  Identities=16%  Similarity=0.366  Sum_probs=47.3

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCCC-cCccc-c-CCcEEEEEeCCCeeEEEEEEE---cCeec--cCCCCC
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWENV-DPLWR-L-GKDFVIMKMLPSGVYHYRFIV---DECLR--YAPDVP  158 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~~-ipL~k-s-~~~f~~~l~Lp~G~Y~YKFiV---DG~W~--~Dp~~P  158 (227)
                      |.|+ |...|+.|+|+|+||+|... .+|.+ . .+.|++.+.....-..|||.|   ||+|.  .||-.-
T Consensus        22 v~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~   92 (110)
T d1m7xa1          22 TRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAF   92 (110)
T ss_dssp             EEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCceEEeEEecCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhc
Confidence            7786 99999999999999999764 57865 3 358999997655555788877   77765  366543

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.59  E-value=9.5e-05  Score=54.78  Aligned_cols=56  Identities=25%  Similarity=0.446  Sum_probs=44.3

Q ss_pred             CcceEEEEEecC---CCceEEEEecCC---CCCCC--cCcccc-----CCcEEEEEeCCCe-eEEEEEEE
Q 027175           92 EKQVAAAITWSL---GGKQVAVTGSWD---NWENV--DPLWRL-----GKDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        92 ~~~vpv~f~W~~---gakeV~V~GSFn---nW~~~--ipL~ks-----~~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      ...+.|+|.-..   -|..|+|+||..   +|+..  ++|...     +..|++++.||.| .++|||+|
T Consensus         4 ~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            356888888765   379999999965   89764  577643     3579999999998 59999998

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.54  E-value=9.6e-05  Score=54.73  Aligned_cols=55  Identities=20%  Similarity=0.321  Sum_probs=43.3

Q ss_pred             cceEEEEEecC----CCceEEEEecCC---CCCC--CcCccccC-----CcEEEEEeCCCee-EEEEEEE
Q 027175           93 KQVAAAITWSL----GGKQVAVTGSWD---NWEN--VDPLWRLG-----KDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~----gakeV~V~GSFn---nW~~--~ipL~ks~-----~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      ..+.|+|+-+.    -|..|+|+|+..   +|+.  .++|..+.     +.|++++.||+|. ++|||++
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~   73 (105)
T d3bmva2           4 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK   73 (105)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEE
Confidence            34788887653    479999999965   9975  35787642     4699999999995 9999997

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.43  E-value=0.00018  Score=53.42  Aligned_cols=54  Identities=20%  Similarity=0.425  Sum_probs=41.2

Q ss_pred             ceEEEEEecC-----CCceEEEEecCC---CCCCC--cCccccC--------CcEEEEEeCCCee-EEEEEEE
Q 027175           94 QVAAAITWSL-----GGKQVAVTGSWD---NWENV--DPLWRLG--------KDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus        94 ~vpv~f~W~~-----gakeV~V~GSFn---nW~~~--ipL~ks~--------~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      .+.|+|+...     -|..|+|+|+..   +|+..  ++|+..+        ..|++++.||.|. ++|||+|
T Consensus         5 ~~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           5 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             ceEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            3567777643     378999999975   89864  4676542        3699999999984 9999987

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.35  E-value=2.5e-05  Score=56.71  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=44.3

Q ss_pred             EEEE-ecCCCceEEEEecCCCCCCCcCccccC-CcEEEEEe-CCCeeEEEEEEEcC-eeccCCCCC
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKM-LPSGVYHYRFIVDE-CLRYAPDVP  158 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW~~~ipL~ks~-~~f~~~l~-Lp~G~Y~YKFiVDG-~W~~Dp~~P  158 (227)
                      |+|+ |...|++|.|++...+|   .+|++.+ +.|++++. +.+| +.|||.||| ..+.||-.-
T Consensus        11 v~FrvwAP~A~~V~l~~~~~~~---~~m~~~~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~   72 (90)
T d1eh9a1          11 VIFTLWAPYQKSVKLKVLEKGL---YEMERDEKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASR   72 (90)
T ss_dssp             EECCEECTTCSCCBCCCSSSCC---CCCCCCTTSEECCEESSCCSC-CEECEECTTSCEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEeecCCc---ccceeCCCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHh
Confidence            5675 99999999999865433   5798875 58999984 7788 569999986 456676543

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.29  E-value=0.0003  Score=51.89  Aligned_cols=55  Identities=20%  Similarity=0.329  Sum_probs=43.7

Q ss_pred             cceEEEEEecC----CCceEEEEecC---CCCCCC--cCccccC-----CcEEEEEeCCCe-eEEEEEEE
Q 027175           93 KQVAAAITWSL----GGKQVAVTGSW---DNWENV--DPLWRLG-----KDFVIMKMLPSG-VYHYRFIV  147 (227)
Q Consensus        93 ~~vpv~f~W~~----gakeV~V~GSF---nnW~~~--ipL~ks~-----~~f~~~l~Lp~G-~Y~YKFiV  147 (227)
                      ..++|+|.-..    -|..|+|+||.   -+|+..  ++|....     ..|.+++.||.| .++|||+|
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            45889998743    58999999996   589753  6787642     368999999998 59999998

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.15  E-value=0.0005  Score=50.30  Aligned_cols=44  Identities=18%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             CCceEEEEecCC---CCCCCc--Ccc--cc-CCcEEEEEeCCCee-EEEEEEE
Q 027175          104 GGKQVAVTGSWD---NWENVD--PLW--RL-GKDFVIMKMLPSGV-YHYRFIV  147 (227)
Q Consensus       104 gakeV~V~GSFn---nW~~~i--pL~--ks-~~~f~~~l~Lp~G~-Y~YKFiV  147 (227)
                      -|..|+|+|+..   +|+...  .|.  .. ...|++.+.||+|. ++|||+|
T Consensus        16 ~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1          16 IGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             TTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             CCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            589999999977   998643  222  22 34799999999985 9999998

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.16  E-value=0.029  Score=43.46  Aligned_cols=59  Identities=10%  Similarity=0.058  Sum_probs=43.9

Q ss_pred             cceEEEEE-ecCCCceEEEEecCCCCCC----CcCcccc-CCcEEEEEe--------CCCeeEEEEEEEcCeec
Q 027175           93 KQVAAAIT-WSLGGKQVAVTGSWDNWEN----VDPLWRL-GKDFVIMKM--------LPSGVYHYRFIVDECLR  152 (227)
Q Consensus        93 ~~vpv~f~-W~~gakeV~V~GSFnnW~~----~ipL~ks-~~~f~~~l~--------Lp~G~Y~YKFiVDG~W~  152 (227)
                      .+.-|.|+ |...|+.|.|+--.+++..    +++|.+. ++.|.+.+.        +.+|.+ |.|.|||.|.
T Consensus        14 ~g~~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~~   86 (162)
T d1bf2a1          14 QQANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPNW   86 (162)
T ss_dssp             TSSEEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEECSTTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTTB
T ss_pred             CCeeEEEEEECCCCCEEEEEEEcCCCCCcceeEEEcccccccEEEEEecccccccccCCCCcE-EEEEEccccC
Confidence            34556784 9999999999986666643    2477764 579999985        777865 8889999753

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.73  E-value=0.022  Score=41.81  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=34.9

Q ss_pred             EEEE-ecCCCceEEEEecCCCC-CCC-cCccc-c-CCcEEEEEe-CCCeeEEEEEEEcCe
Q 027175           97 AAIT-WSLGGKQVAVTGSWDNW-ENV-DPLWR-L-GKDFVIMKM-LPSGVYHYRFIVDEC  150 (227)
Q Consensus        97 v~f~-W~~gakeV~V~GSFnnW-~~~-ipL~k-s-~~~f~~~l~-Lp~G~Y~YKFiVDG~  150 (227)
                      |.|+ |...|++|.|+---.++ ... .+|.+ . ++.|.+.+. +.+|.+ |+|.|+|.
T Consensus        19 ~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G~~-Y~y~v~~~   77 (115)
T d2fhfa1          19 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGAF-YRYAMTVY   77 (115)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTCE-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCCCE-EEEEEEcc
Confidence            5676 99999999987433333 221 23433 3 469999885 677875 78888764

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=90.78  E-value=0.87  Score=34.97  Aligned_cols=84  Identities=17%  Similarity=0.118  Sum_probs=55.6

Q ss_pred             CcceEEEEEecCC--------CceEEEEecCCC----CCCCcCccccCC--cEEEEEeCCCe-eEEEEEEE-c-------
Q 027175           92 EKQVAAAITWSLG--------GKQVAVTGSWDN----WENVDPLWRLGK--DFVIMKMLPSG-VYHYRFIV-D-------  148 (227)
Q Consensus        92 ~~~vpv~f~W~~g--------akeV~V~GSFnn----W~~~ipL~ks~~--~f~~~l~Lp~G-~Y~YKFiV-D-------  148 (227)
                      ...+-|+|-|.+.        .+.|+|.++---    ......|+|-.+  +|..++.||.. +-.|+|+. +       
T Consensus        20 ~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~gTDVW~~s~~vpad~rgsY~fip~~~~~~~~~   99 (145)
T d3c8da1          20 DEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIFSA   99 (145)
T ss_dssp             SSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTTSSEEEEEEEEETTCEEEEEEEEESCCSTTCC
T ss_pred             CCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCCCCCeEEEEEEECcccEEEEEEEecCcccCCCc
Confidence            3457899999862        246999766432    222246898754  79999999987 68899984 1       


Q ss_pred             --C------e-e-------ccCCCCCee-eCCCCCeeEEEEcCC
Q 027175          149 --E------C-L-------RYAPDVPWE-CDDSGNAYNVLDLQP  175 (227)
Q Consensus       149 --G------~-W-------~~Dp~~P~~-~D~~G~~NNvL~V~d  175 (227)
                        +      + |       +.||-||.. ...-|+-.++|+..+
T Consensus       100 ~~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~lp~  143 (145)
T d3c8da1         100 PSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQ  143 (145)
T ss_dssp             C--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTT
T ss_pred             CCccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCcccccccCC
Confidence              1      1 1       568888853 345666677777654

>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Family 6 carbohydrate binding module, CBM6
domain: Putative xylanase
species: Clostridium stercorarium [TaxId: 1510]

Probab=81.10  E-value=0.37  Score=35.13  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=24.0

Q ss_pred             EecCCCCCCCcCccccCCcEEEEEeCCCeeEEEEEEEcCe
Q 027175          111 TGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDEC  150 (227)
Q Consensus       111 ~GSFnnW~~~ipL~ks~~~f~~~l~Lp~G~Y~YKFiVDG~  150 (227)
                      +|+|++|+.          .++.+.|+.|+|..+|..+|.
T Consensus        91 Tggw~~w~t----------~~~~v~l~~G~h~l~l~~~g~  120 (132)
T d1od3a_          91 TGSFDTYRD----------VSATISNTAGVKDIVLVFSGP  120 (132)
T ss_dssp             CSSTTCCEE----------EEEEEEEECSEEEEEEEESSC
T ss_pred             cCCCcEEEE----------EEEEEEeCCceEEEEEEEeCC
Confidence            477777765          456788999999999988874