Citrus Sinensis ID: 027177

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccccHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHccHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHccEcccccEcccccccccHcc
Coil and Loop (DISEMBL)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDIlgkldavdeEDVISWILKCqdesggfagnighdphVLYTLSAVQVLALFDkvdildadkvSNYIVGLqnedgsfsgdiwgevdTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKnldggfgctpggeshsgqiFCCVGALAIAGALHHVDKDLLGWWLCERQvksgglngrpeklpdvvm
Flexible Loop (DISEMBL)
mgelaadkhvkyiisvekkkdsfESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQvksgglngrpeklpdvvm
Low Complexity Region (SEG)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM
Disordered region (IsUnstruct)
********HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV*****************
Disordered Region (DISOPRED)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM
Disordered Region (DISEMBL)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM
Disordered Region (DISPRO)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
P53611	331	Geranylgeranyl transferas	yes	no	0.973	0.667	0.590	3e-81
Q5E9B3	331	Geranylgeranyl transferas	yes	no	0.973	0.667	0.585	1e-80
P53612	339	Geranylgeranyl transferas	yes	no	0.973	0.651	0.590	3e-80
Q08603	331	Geranylgeranyl transferas	yes	no	0.973	0.667	0.585	5e-80
B0G172	339	Probable geranylgeranyl t	yes	no	0.977	0.654	0.609	2e-74
P41992	335	Probable geranylgeranyl t	no	no	0.977	0.662	0.497	3e-64
P46960	311	Geranylgeranyl transferas	yes	no	0.982	0.717	0.504	2e-63
P20133	325	Geranylgeranyl transferas	yes	no	0.977	0.683	0.528	1e-60
O93830	341	Geranylgeranyl transferas	N/A	no	0.955	0.636	0.493	1e-51
O13782	382	Protein farnesyltransfera	no	no	0.947	0.562	0.333	4e-27

>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2

 Score =  301 bits (770), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 131/222 (59%), Positives = 175/222 (78%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+ GLQ EDGSF+GDI
Sbjct: 78  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 0

>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1

 Score =  299 bits (765), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2

 Score =  297 bits (761), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 131/222 (59%), Positives = 172/222 (77%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++ +I  
Sbjct: 26  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKS 85

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 86  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDI 145

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 146 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 205

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 206 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 247

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1

 Score =  297 bits (760), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1

 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 169/223 (75%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  DKHV+YI+ +  KKDSFE  V EH+R+NG YWGL++L +L  LD +D+ +VI W+L
Sbjct: 21  NLLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLL 80

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ  +GGF GN  HD H+L TLSAVQ+L  +D +D +D + V +Y+V LQ EDGSF GD
Sbjct: 81  SCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQREDGSFVGD 140

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
            WGEVDTRFSY AI CLS+L+ LDKIN +KAVEYI+SC+N DGGFG  PG ESH+GQIF 
Sbjct: 141 QWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFT 200

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           CVGAL+I   ++ +D D LGWWL ERQ+ +GGLNGRPEK  DV
Sbjct: 201 CVGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDV 243

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/223 (49%), Positives = 154/223 (69%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
           EL  D H  +I   EK K+S+  ++ EHLR++G YW +  +D+  +L+ +  E++++++L
Sbjct: 23  ELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVL 82

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            C++  GG+    GHD H+L+TL AVQ L +F+ ++  DAD +S Y+ GLQ EDGSF GD
Sbjct: 83  GCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGD 142

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           + GEVDTRF+  ++    +L RL  +N+D AV +++ C N DGGFG  PG ESHSGQI+C
Sbjct: 143 LSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYC 202

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           CVGALAIAG L  +D+D    WL  RQ  SGGLNGRPEKLPDV
Sbjct: 203 CVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDV 245

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 152/224 (67%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           M  L  DKH+ Y+  +  + D  +  + EHL ++  YW   +  +L K D +D+E ++S+
Sbjct: 1   MAVLLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSF 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +L C  ESGGFA   GHD H+  T+ AVQVLA+ D + ++D DKV++YI+GLQNEDGS  
Sbjct: 61  LLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMK 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGE+D RF Y  I CL+IL +LD +N + AV++++ C N DGGFG  PG ESH   +
Sbjct: 121 GDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMV 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224
           F CV AL I   L  +D++LLGWW+ ERQVK GGLNGRPEKLPD
Sbjct: 181 FTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPD 224

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3

 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/229 (52%), Positives = 154/229 (67%), Gaps = 7/229 (3%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH++YI S++ KK +FE  + EHLRLNG YWGLT L +L   +   +E+VIS++L 
Sbjct: 7   LLKEKHIRYIESLDTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLS 66

Query: 64  CQDES-GGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK---VSNYIVGLQNEDGSF 119
           C D+  G FA    HD H+L TLSAVQ+LA +D +D+L  D+   + ++I G Q EDGSF
Sbjct: 67  CWDDKYGAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSF 126

Query: 120 SGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQ 179
            GD +GEVDTRF Y A+  LSIL  L    VD AV++++ C N DGGFG  P  ESH+ Q
Sbjct: 127 QGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQ 186

Query: 180 IFCCVGALAIAGALHHVDKDLL---GWWLCERQVKSGGLNGRPEKLPDV 225
            F C+GALAIA  L  +  D L   GWWLCERQ+  GGLNGRP KLPDV
Sbjct: 187 AFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDV 235

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/235 (49%), Positives = 149/235 (63%), Gaps = 18/235 (7%)

Query: 8   KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC-QD 66
           KHV+YI+  E  + SFE  + EHLR+NG YWG+T L  + +L A+ ++DVI +I+ C  D
Sbjct: 17  KHVQYIVEQESHR-SFEYWLSEHLRMNGLYWGVTALITMNELSALAQQDVIDYIMLCWDD 75

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDIL-DADKVSN---------YIVGLQNE 115
           ++G F     HD H+L TLSA+QVL ++D+ + +L D ++ SN         +I GLQ  
Sbjct: 76  KTGAFGSFPKHDGHILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLP 135

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
           DGSF GD +GEVDTRF Y A+  LS+L  L     D A  +I+ C N DGGFG  PG ES
Sbjct: 136 DGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSES 195

Query: 176 HSGQIFCCVGALAIAGALHHVD----KDLLGWWLCERQV-KSGGLNGRPEKLPDV 225
           H+ Q+F CVGALAI   L  +D    K  L  WL ERQV  SGG NGRPEKLPDV
Sbjct: 196 HAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDV 250

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 10/225 (4%)

Query: 7   DKHVKYIISVEKKKDSFES--VVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC 64
            KH+KY+    K  D   S   V++  R    YW L++L ILGKLD+   E  IS + + 
Sbjct: 32  QKHLKYLT---KMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSSVCERAISSVRQL 88

Query: 65  QDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNEDGSFSG 121
           +  SGGF G  G D H+L T +++  + L D  D   +++ D++ +++  L+N DGSF  
Sbjct: 89  KGPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRV 148

Query: 122 DIWGEVDTRFSYIAICCLSILQ-RLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           +  GE D R  Y A+C  S++   +D    +  ++++  C+  +GG    P  E+H G  
Sbjct: 149 NNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYT 208

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPD 224
           FC + A+A+ G L ++++  L  WL +RQ  +  G +GR  KL D
Sbjct: 209 FCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVD 253

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
224125104	313	predicted protein [Populus trichocarpa]	0.986	0.715	0.857	1e-112
449436108	317	PREDICTED: geranylgeranyl transferase ty	0.986	0.706	0.831	1e-111
225436251	317	PREDICTED: geranylgeranyl transferase ty	0.986	0.706	0.822	1e-110
388518319	283	unknown [Lotus japonicus]	0.991	0.795	0.822	1e-109
255574367	306	geranylgeranyl transferase type II beta	0.986	0.732	0.831	1e-108
34148075	317	putative Rab geranylgeranyl transferase	0.986	0.706	0.817	1e-108
217072034	247	unknown [Medicago truncatula]	0.991	0.910	0.817	1e-108
363806846	317	uncharacterized protein LOC100793642 [Gl	0.986	0.706	0.813	1e-107
225447413	317	PREDICTED: geranylgeranyl transferase ty	0.986	0.706	0.804	1e-107
356512465	320	PREDICTED: geranylgeranyl transferase ty	0.991	0.703	0.784	1e-105

>gi|224125104|ref|XP_002319501.1| predicted protein [Populus trichocarpa] gi|222857877|gb|EEE95424.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/225 (85%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL  DKHVKYI+SVEK+KDSFESVV+EHLR+NGAYWGL TLD+LGKLDA+D  +VI W
Sbjct: 1   MGELVVDKHVKYILSVEKRKDSFESVVLEHLRMNGAYWGLATLDLLGKLDALDSNEVIEW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+KCQ ESGGFAGNIGHDPH+LYTLSAVQVLALFDK+++LDADKV+NYI GLQNEDGSFS
Sbjct: 61  IMKCQHESGGFAGNIGHDPHMLYTLSAVQVLALFDKLNVLDADKVANYISGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVD+RFSY+AICCLSIL RLDKINV+KAV YI SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDEWGEVDSRFSYLAICCLSILHRLDKINVEKAVNYIASCKNVDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436108|ref|XP_004135836.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus] gi|449490992|ref|XP_004158768.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/225 (83%), Positives = 213/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEKKKD F+SVVMEHLR+NGAYWGLT LDILGKLD VD ++V+SW
Sbjct: 1   MGELATEKHVQYILSVEKKKDDFQSVVMEHLRMNGAYWGLTALDILGKLDTVDADEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF+GN+GHDPH+LYTLSAVQVLALFDK+D+LD DKV+NY+VGLQNEDGSFS
Sbjct: 61  VMSCQHESGGFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GDIWGEVD+RFSYIAI CLS+L +LDKINV+KAV ++VSCKN+DGGFGCTPGGESHSGQI
Sbjct: 121 GDIWGEVDSRFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTPGGESHSGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALA+ G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436251|ref|XP_002275861.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera] gi|147860391|emb|CAN82570.1| hypothetical protein VITISV_016117 [Vitis vinifera] gi|296090220|emb|CBI40039.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +G+L  +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKLD VDE+++ISW
Sbjct: 5   IGDLEVEKHVQYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLDMVDEDEIISW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK+++LD DKVSNYI GLQNEDGSFS
Sbjct: 65  VMECQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVLDIDKVSNYIAGLQNEDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE+DTRFSYIAIC LS+LQRLDKINV+KAV YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct: 125 GDMWGEIDTRFSYIAICSLSLLQRLDKINVEKAVNYIVSCKNLDGGFGCTPGAESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCV ALA+ G+LHHVDKDLLGWWLCERQVKSG LNGRPEKLPDV
Sbjct: 185 FCCVSALALTGSLHHVDKDLLGWWLCERQVKSGALNGRPEKLPDV 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518319|gb|AFK47221.1| unknown [Lotus japonicus]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL ++KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLT LD+LGKL  VD ++V+SW
Sbjct: 1   MGELVSEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQDESGGFAGN+GHDPH+LYTLSAVQVLALFDK+  +D D+V+NYIV LQNEDGSFS
Sbjct: 61  VMSCQDESGGFAGNVGHDPHILYTLSAVQVLALFDKLYAIDVDRVTNYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVDTRFSYIAICCLSIL+RLDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574367|ref|XP_002528097.1| geranylgeranyl transferase type II beta subunit, putative [Ricinus communis] gi|223532486|gb|EEF34276.1| geranylgeranyl transferase type II beta subunit, putative [Ricinus communis]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/225 (83%), Positives = 207/225 (92%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA DKHV+YIISVEKK DSFE VVMEHLR+NGAYWGL TLD+LGKLD VD  +VI W
Sbjct: 1   MGELAVDKHVEYIISVEKKNDSFEYVVMEHLRMNGAYWGLATLDLLGKLDVVDSSEVIDW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I++CQ ESGGFAGNIGHDPH+LYTLSAVQVLALF+K+++LD DKVSNY+ GLQNEDGSFS
Sbjct: 61  IMQCQHESGGFAGNIGHDPHILYTLSAVQVLALFNKLNVLDIDKVSNYVAGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE DTRFSYI ICCLS+L  LDKINV+KAV YI+SCKN+DGGFG +PGGESH+GQI
Sbjct: 121 GDMWGEADTRFSYIGICCLSLLHCLDKINVEKAVNYILSCKNVDGGFGSSPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34148075|gb|AAQ62584.1| putative Rab geranylgeranyl transferase type II beta subunit [Glycine max]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL +VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHSVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK++++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGEVDTRFSYIAICCLSIL  LDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDMWGEVDTRFSYIAICCLSILHCLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072034|gb|ACJ84377.1| unknown [Medicago truncatula]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 210/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL A+K ++YI+S+EKKKDSFESVVMEHLR+NGAYWGLTTLD+LGKLD VD ++V+SW
Sbjct: 1   MGELVAEKRLRYILSIEKKKDSFESVVMEHLRMNGAYWGLTTLDLLGKLDTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+ C    GGFAGN+GHDPH+LYTLSAVQVLALF+K+ ++DADKV+NYIV LQNEDGSFS
Sbjct: 61  IISCHHHDGGFAGNVGHDPHILYTLSAVQVLALFNKLHLIDADKVTNYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GDIWGEVDTRFSYIAICCLSIL+RLD+INV+ AV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDIWGEVDTRFSYIAICCLSILRRLDRINVENAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806846|ref|NP_001242036.1| uncharacterized protein LOC100793642 [Glycine max] gi|255635594|gb|ACU18147.1| unknown [Glycine max]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/225 (81%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL +VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHSVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK++++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGEVDTRFSYI ICCLSIL  LDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDMWGEVDTRFSYIVICCLSILHCLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447413|ref|XP_002281543.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera] gi|147821440|emb|CAN74579.1| hypothetical protein VITISV_024797 [Vitis vinifera] gi|296081232|emb|CBI17976.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/225 (80%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +GEL A+KHV+YI+ VEK+KD FESVV EHLR+NGAYWGLTTLD+LGKL+ VD+++V+SW
Sbjct: 5   IGELEAEKHVQYILLVEKRKDDFESVVTEHLRMNGAYWGLTTLDLLGKLEIVDQDEVVSW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GNIGHDPH+++TLSAVQVLALFDK+++LD DK++NYI GLQN DGSFS
Sbjct: 65  VMECQHESGGFGGNIGHDPHIVHTLSAVQVLALFDKLNVLDIDKITNYIAGLQNVDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE+DTRFSYIAICCLS+LQ LDKINV+KAV YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct: 125 GDMWGEIDTRFSYIAICCLSLLQCLDKINVEKAVNYIVSCKNLDGGFGCTPGAESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALA+ G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 185 FCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512465|ref|XP_003524939.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Glycine max]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/232 (78%), Positives = 210/232 (90%), Gaps = 7/232 (3%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL  VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ +SGGF GN+ HDPH+LYTLSAVQVL+LFDK+D++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHDSGGFGGNVEHDPHILYTLSAVQVLSLFDKLDVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEY-------IVSCKNLDGGFGCTPGG 173
           GD+WGEVDTRFSYIAICCLSIL RLDKINV+KAV+Y        +SCKN+DGGFGCTPGG
Sbjct: 121 GDMWGEVDTRFSYIAICCLSILHRLDKINVEKAVKYIIFFFFGFISCKNMDGGFGCTPGG 180

Query: 174 ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           ESH+GQIFCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 ESHAGQIFCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2177058	321	RGTB1 "RAB geranylgeranyl tran	0.991	0.700	0.8	1.1e-101
TAIR|locus:2088614	317	RGTB2 "RAB geranylgeranyl tran	0.982	0.703	0.796	5e-99
UNIPROTKB|P53611	331	RABGGTB "Geranylgeranyl transf	0.977	0.670	0.590	1.3e-77
ZFIN|ZDB-GENE-040426-2116	331	rabggtb "Rab geranylgeranyltra	0.977	0.670	0.594	1.3e-77
UNIPROTKB|F1P6X0	331	RABGGTB "Uncharacterized prote	0.977	0.670	0.585	5.5e-77
UNIPROTKB|G8JKY6	331	RABGGTB "Geranylgeranyl transf	0.977	0.670	0.585	7.1e-77
UNIPROTKB|Q5E9B3	331	RABGGTB "Geranylgeranyl transf	0.977	0.670	0.585	7.1e-77
MGI|MGI:99537	339	Rabggtb "RAB geranylgeranyl tr	0.977	0.654	0.590	1.9e-76
RGD|3530	331	Rabggtb "Rab geranylgeranyltra	0.977	0.670	0.585	2.4e-76
UNIPROTKB|F1LSM6	331	Rabggtb "Geranylgeranyl transf	0.977	0.670	0.585	2.4e-76

TAIR|locus:2177058 RGTB1 "RAB geranylgeranyl transferase beta subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 180/225 (80%), Positives = 205/225 (91%)

Query:     1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             M +L ADKHV+YI+  EKKK+SFESVVM+HLR+NGAYWGLTTLD+L KL  V EE+VISW
Sbjct:     9 MVQLVADKHVRYILMAEKKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISW 68

Query:    61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
             ++ CQ ESGGFAGN GHDPH+LYTLSAVQ+LALFDK++ILD  KVS+Y+  LQNEDGSFS
Sbjct:    69 LMTCQHESGGFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFS 128

Query:   121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
             GD+WGE+DTRFSYIAICCLSIL+ LDKINV+KAV+YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct:   129 GDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQI 188

Query:   181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
             FCCVGALAI G+LHHVDKD LGWWLCERQ+K+GGLNGRPEKL DV
Sbjct:   189 FCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADV 233

GO:0003824 "catalytic activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2088614 RGTB2 "RAB geranylgeranyl transferase beta subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 180/226 (79%), Positives = 205/226 (90%)

Query:     3 ELAADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             +L A KH++YI+++  EKKK+SFESVVM+HLR+NGAYWGLTTL +L KL +V E++V+SW
Sbjct:     4 KLVAGKHLRYILNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSW 63

Query:    61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
             ++ CQ ESGGFAGN GHDPHVLYTLSAVQ+LALFDK++ILD +KVSNYI GLQNEDGSFS
Sbjct:    64 VMTCQHESGGFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFS 123

Query:   121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
             GDIWGEVDTRFSYIAICCLSIL+ LDKINV KAV+YIVSCKNLDGGFGC+PG ESH+GQI
Sbjct:   124 GDIWGEVDTRFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQI 183

Query:   181 FCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDV 225
             FCCVGALAI G LH VDKDLLGWWLCERQ  +SGGLNGRPEKLPDV
Sbjct:   184 FCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDV 229

GO:0003824 "catalytic activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|P53611 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 131/222 (59%), Positives = 175/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+ GLQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=NAS

GO:0007601 "visual perception" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-2116 rabggtb "Rab geranylgeranyltransferase, beta subunit" [Danio rerio (taxid:7955)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 132/222 (59%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  DKH  YI +   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E++I +I  
Sbjct:    18 LFLDKHADYIAAYGSKKDDYEYTLSEYLRMSGIYWGLTVMDLMGQLSRMNREEIIEFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ + GG + +IGHDPH+LYTLSA+Q+L+L+D V+ +D DKV  Y+ GLQ EDGSF+GD 
Sbjct:    78 CQHDCGGISASIGHDPHLLYTLSAIQILSLYDSVNAIDVDKVVEYVKGLQQEDGSFAGDK 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INVDKAVE+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDVINVDKAVEFVMSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G L++ G LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLSVTGQLHQVNADLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1P6X0 RABGGTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|G8JKY6 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|Q5E9B3 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

MGI|MGI:99537 Rabggtb "RAB geranylgeranyl transferase, b subunit" [Mus musculus (taxid:10090)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 131/222 (59%), Positives = 172/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++ +I  
Sbjct:    26 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKS 85

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    86 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDI 145

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   146 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 205

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   206 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 247

GO:0003824 "catalytic activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|3530 Rabggtb "Rab geranylgeranyltransferase, beta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IDA

GO:0018344 "protein geranylgeranylation" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LSM6 Rabggtb "Geranylgeranyl transferase type-2 subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5E9B3	PGTB2_BOVIN	2, ., 5, ., 1, ., 6, 0	0.5855	0.9735	0.6676	yes	no
Q08603	PGTB2_RAT	2, ., 5, ., 1, ., 6, 0	0.5855	0.9735	0.6676	yes	no
P20133	PGTB2_YEAST	2, ., 5, ., 1, ., 6, 0	0.5283	0.9779	0.6830	yes	no
P46960	PGTB2_SCHPO	2, ., 5, ., 1, ., 6, 0	0.5044	0.9823	0.7170	yes	no
B0G172	PGTB2_DICDI	2, ., 5, ., 1, ., 6, 0	0.6098	0.9779	0.6548	yes	no
P53612	PGTB2_MOUSE	2, ., 5, ., 1, ., 6, 0	0.5900	0.9735	0.6519	yes	no
P53611	PGTB2_HUMAN	2, ., 5, ., 1, ., 6, 0	0.5900	0.9735	0.6676	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.60	0.824
3rd Layer	2.5.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XIII000054 hypothetical protein (313 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	1e-169
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	1e-131
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	1e-101
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	3e-82
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	5e-53
cd02893	299	cd02893, FTase, Protein farnesyltransferase (FTase	7e-48
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	6e-44
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	5e-30
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	6e-23
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	4e-22
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	4e-20
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	6e-17
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	3e-14
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	2e-13
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	2e-12
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	4e-12
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	6e-12
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	2e-11
pfam13243	109	pfam13243, Prenyltrans_1, Prenyltransferase-like	2e-10
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	9e-10
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	1e-09
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	3e-09
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	4e-09
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	2e-08
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	5e-07
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	6e-06
pfam13243	109	pfam13243, Prenyltrans_1, Prenyltransferase-like	8e-06
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	2e-05
TIGR01787	621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	5e-05
cd02892	634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	1e-04
COG1689	274	COG1689, COG1689, Uncharacterized protein conserve	2e-04
cd02889	348	cd02889, SQCY, Squalene cyclase (SQCY) domain; fou	2e-04
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	0.001
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	0.004

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score =  469 bits (1208), Expect = e-169
 Identities = 185/225 (82%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL  DKHV+YI S+EKKKDSFESVVMEHLR+NGAYWGLT LD+LGKLD VD ++V+SW
Sbjct: 5   MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GN GHDPH+LYTLSAVQ+LALFD++D+LDADKV++Y+ GLQNEDGSFS
Sbjct: 65  VMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGE+DTRFSY A+CCLS+L+RLDKINV+KAV+YIVSCKN DGGFGCTPGGESH+GQI
Sbjct: 125 GDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 185 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 229

Length = 316

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  370 bits (952), Expect = e-131
 Identities = 142/225 (63%), Positives = 186/225 (82%), Gaps = 3/225 (1%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH++YI+S+ KKKD +E ++ EHLR++G YWGLT LD+LG+L+ ++ E++I ++  
Sbjct: 1   LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKS 60

Query: 64  CQD-ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFS 120
           CQD E GGF G+ GHDPH+L TLSA+Q+LAL+D ++ +D   +K++ +I GLQNEDGSFS
Sbjct: 61  CQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVDTRFSY A+ CL++L +LD I+VDKAV+Y++SC N DGGFGC PG ESH+GQI
Sbjct: 121 GDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  +D+D LGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDV 225

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  294 bits (755), Expect = e-101
 Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 6/224 (2%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ 65
           +KH+KY+    K   S     ++  RL   YW L++LD+LG+ LD  +++++I +I  CQ
Sbjct: 2   EKHIKYLQRCLKLLPS-SYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQ 60

Query: 66  -DESGGFAGNIGHDPHVLYTLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGD 122
            +E GGF G  G DPH+  T +AV  LA+     +  +D +K+  ++  LQN DGSF GD
Sbjct: 61  VNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGD 120

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           + GEVDTRF Y A+  LS+L  L  I+ +K ++YI+SC+N DGGFG  PG ESH G  FC
Sbjct: 121 LGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFC 180

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDV 225
            V +LA+ G L  +DK+ L  WL ERQ+ SG G NGRP KL D 
Sbjct: 181 AVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDT 224

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  248 bits (635), Expect = 3e-82
 Identities = 100/228 (43%), Positives = 138/228 (60%), Gaps = 5/228 (2%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA-VDEEDVISWI 61
           +L  DKH+ Y++            ++E  RLN  YWG  +L +L + D  VD+E  IS++
Sbjct: 25  QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFV 84

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK---VSNYIVGLQNEDGS 118
           L C   SGGF G  G D H+  T+ A+Q LA+ D +D+L       ++++I GL+N DGS
Sbjct: 85  LGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGS 144

Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F  D+ GEVDTRF YIA+  LS+L  LDK   + AV+Y+  C+N +GGFG  P  E+H+G
Sbjct: 145 FRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAG 204

Query: 179 QIFCCVGALAIAGALHHV-DKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
             FC + ALA+ G L  + D + L  WL ERQ+ SGGLNGR  KL D 
Sbjct: 205 YTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDT 252

Length = 342

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score =  172 bits (437), Expect = 5e-53
 Identities = 74/243 (30%), Positives = 108/243 (44%), Gaps = 24/243 (9%)

Query: 6   ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDE------EDVIS 59
            +KH+KY++             +   +     W L  L +L     + +      E  I 
Sbjct: 1   IEKHLKYLLRYPYGDGH-WYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQ 59

Query: 60  WILKCQDESGGFAGNIGHD-PHVLYTLSAVQVLALFDKVDILDAD---KVSNYIVGLQNE 115
            +L  Q   GGF+G  G+D P +  T  A++ L L      +D     +  N+++ LQNE
Sbjct: 60  RLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNE 119

Query: 116 DGSFSGDIWG-------EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGF 167
           DG F  D  G       E D R +  A+  L++L +L     ++KA++Y++SC+N DGGF
Sbjct: 120 DGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF 179

Query: 168 GCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPE---KLPD 224
           G  PGGESH     C   ALA+ G L   D      WL  RQ   GG     +   KL D
Sbjct: 180 G--PGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237

Query: 225 VVM 227
              
Sbjct: 238 SCY 240

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  158 bits (403), Expect = 7e-48
 Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 7   DKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKC 64
           +KH+KY+  S+ +   SF S+      L   YW L +L++LG+ LD    +DVIS++ +C
Sbjct: 2   EKHIKYLKKSLRQLPSSFTSLDASRPWL--LYWILHSLELLGEELDQSYADDVISFLRRC 59

Query: 65  QDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA---DKVSNYIVGLQNEDGSFSG 121
           Q+ SGGF G  G  PH+  T +AV  LA+    +  D    + +  +++ L+  DGSF  
Sbjct: 60  QNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRM 119

Query: 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIF 181
            + GEVD R +Y AI   S+L  L     +   EYI+SC+  +GGFG  PG E+H G  F
Sbjct: 120 HVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTF 179

Query: 182 CCVGALAIAGALHHVDKD-LLGWWLCERQVKSGGLNGRPEKLPD 224
           C + ALAI G    +D + LL W +  +    GG  GR  KL D
Sbjct: 180 CALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVD 223

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis. Length = 299

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  148 bits (377), Expect = 6e-44
 Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 29/245 (11%)

Query: 7   DKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEED---VISWIL 62
            KHVK+    ++    S++S+    L +  A++ L+ LD+LG LD++  E+   +I WI 
Sbjct: 2   KKHVKFFQRCLQLLPSSYQSLDTNRLTI--AFFALSGLDLLGALDSILVEEKDDIIEWIY 59

Query: 63  KCQ----DESGGFAG---------NIGHD-PHVLYTLSAVQVLA-LFDKVDILDADKVSN 107
             Q       GGF G            +D  ++  T  A+  L  L D +  +D   + N
Sbjct: 60  SLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILN 119

Query: 108 YIVGLQNEDGSFSGDIW---GEVDTRFSYIAICCLSILQRLDK--INVDKAVEYIVSCKN 162
           ++  LQ  DGSF   +    GE D RF Y A+    +L    +  I+ +K ++YI S ++
Sbjct: 120 FLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQS 179

Query: 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD---KDLLGWWLCERQVKSGGLNGRP 219
            DGGFG  PG ESH G  FC + +L++ G L  +     + L  WL  RQV   G NGRP
Sbjct: 180 YDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRP 239

Query: 220 EKLPD 224
            K  D
Sbjct: 240 NKPAD 244

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score =  114 bits (288), Expect = 5e-30
 Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 1   MGELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVI 58
           M EL  +KH++Y+    ++   SF   V++  R    YW L ++ +LG+ LD   E D I
Sbjct: 41  MLELWREKHLEYLTRGLRQLGPSFS--VLDANRPWLCYWILHSIALLGESLDDELENDTI 98

Query: 59  SWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNE 115
            ++ +CQD +GG+ G  G  PH+  T +AV  L        L   + +K+  +++ +++ 
Sbjct: 99  DFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDP 158

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
            G F     GE+D R  Y AI   S+L  LD   V    +YI+SC+  +GG G  PG E+
Sbjct: 159 SGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEA 218

Query: 176 HSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224
           H G  FC + A+ +   +  +D   L  W+  RQ   GG  GR  KL D
Sbjct: 219 HGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVD 267

Length = 439

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 89.0 bits (221), Expect = 6e-23
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 58  ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDG 117
           + ++L  Q+  GG+   +G    V  T  A+  LA     +  D  K   +++  QN DG
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALG--ETPDVKKALAWLLSQQNPDG 58

Query: 118 SFSGD-IWGEVDTRFSYIAICCLSIL-QRLDKINVDKAVEYIVSCKNLDGGFG 168
            F  D      D   +  A+  L +L    D   V+KAV+Y++SC+N DGGFG
Sbjct: 59  GFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111

Length = 112

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 91.5 bits (228), Expect = 4e-22
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG 69
            K++ S++    SF   +   +     Y  L+ L +L  L  +D+E +I +IL CQ+  G
Sbjct: 104 YKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDG 163

Query: 70  GFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWGEVD 128
           GF G  G + H  YT  AV  LAL  ++D++D +++  ++V  Q    G F+G     VD
Sbjct: 164 GFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVD 223

Query: 129 TRFSYIAICCLSILQRLDKINVDKAVEYI-VSCKNLDGGFGCTPGGES---HSGQIFCCV 184
           T +S+     L IL RL  I+ +K  EYI    ++  GGF   PG      H+   +  +
Sbjct: 224 TCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHT---YYGL 280

Query: 185 GALAIA 190
             L++ 
Sbjct: 281 SGLSLL 286

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 21/178 (11%)

Query: 6   ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWG----------LTTLDILGKLDAVDEE 55
            +K  K+I  ++ +  SF          +G  WG          +  L +LGKLD +D +
Sbjct: 102 KEKIAKFIKGLQNEDGSF----------SGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVD 151

Query: 56  DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNE 115
             + ++L C +  GGF    G + H       V  LA+   +D++D D++  ++   Q  
Sbjct: 152 KAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLP 211

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNL-DGGFGCTPG 172
            G  +G      D  +S+  +  L I+ RL  IN +K   +I++C++  DGGF   PG
Sbjct: 212 SGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPG 269

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 77.8 bits (192), Expect = 6e-17
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 2/182 (1%)

Query: 12  YIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGF 71
           +I  ++    SF S +   +     Y  L+ L +LG LD    E  + ++ KCQ+  GGF
Sbjct: 134 FISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGF 193

Query: 72  AGNIGHDPHVLYTLSAVQVLALFDKVDIL-DADKVSNYIVGLQNEDGSFSGDIWGEVDTR 130
                 + H  YT  A+  LAL  K+D L D +K+  ++   Q   G  +G     VDT 
Sbjct: 194 GLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTC 253

Query: 131 FSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPGGESHSGQIFCCVGALAI 189
           +S+  +  L+IL +LD IN ++  +YI+ C+    GGF   PG E         +  L++
Sbjct: 254 YSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSL 313

Query: 190 AG 191
             
Sbjct: 314 IE 315

Length = 342

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 69.9 bits (171), Expect = 3e-14
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 14/171 (8%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGA-------YWGLTTLDILGKLDA-VDEEDVISWI 61
           + +++S++ +   F      + R+ G         + L  L +LGKLD     E  + ++
Sbjct: 110 LNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYL 169

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG 121
           L CQ+  GGF    G + H   T  A   LAL   +D  DA K   +++  Q  DG +  
Sbjct: 170 LSCQNYDGGFGP--GGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGE 227

Query: 122 DIWGEVDT-RFSYIAICCLSIL---QRLDKINVDKAVEYIVSCKNLDGGFG 168
                       Y      ++L   +  D  + +K V++++S +N DGGF 
Sbjct: 228 GRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFS 278

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 40/166 (24%), Positives = 77/166 (46%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +  L ADK   Y+  ++ +  SF       +    +Y  L  L +L +LD ++ E  + +
Sbjct: 101 LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDY 160

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+ C++  GGF    G + H       V  LA+   +  +D D +  ++   Q + G  +
Sbjct: 161 IVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLN 220

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG 166
           G      D  +S+  +  L I+ R+  I+ DK  ++I+ C++ + G
Sbjct: 221 GRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENG 266

Length = 316

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 59.5 bits (145), Expect = 2e-12
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191
           I+ +K V+Y++SC+N DGGFG  PGGES +   +C + ALA+ G
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 52  VDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVS---NY 108
           +D+E +I +I   Q   GGF    G + H   T  A+  L+L  K++ L    +     +
Sbjct: 165 IDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRW 224

Query: 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGF 167
           +V  Q     F+G      DT +S+     L +L     I+ +K   Y++S +  L GGF
Sbjct: 225 LVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGF 284

Query: 168 GCTPGG 173
              P  
Sbjct: 285 AKNPDS 290

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 60.1 bits (146), Expect = 6e-12
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG 166
           +Y++  QN DG +   + G  D   + +A+  L+ L   +  +V KA+ +++S +N DGG
Sbjct: 2   DYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALG--ETPDVKKALAWLLSQQNPDGG 59

Query: 167 FGCTPGGESHS-GQIFCCVGALAIAGALHHVD--KDLLGWWLCERQVKSGG 214
           FG  P   S         + AL + G     +  +  +  +L   Q   GG
Sbjct: 60  FGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAV-DYLLSCQNPDGG 109

Length = 112

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG 69
           V Y++S +     + + V     +      L  L  LG+   V +   ++W+L  Q+  G
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVKK--ALAWLLSQQNPDG 58

Query: 70  GFAGN-IGHDPHVLYTLSAVQVL-ALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           GF  +   + P +  T  A+  L  L  + D    +K  +Y++  QN DG F 
Sbjct: 59  GFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111

Length = 112

>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 55  EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA-DKVSNYIVGLQ 113
           E  + +IL  Q+  G ++ + G D  V  T +  + LAL     +L+A  K   +++  Q
Sbjct: 2   ERAVEYILNTQNPDGSWSYSSGGDVSV--TAALARALALAGDARVLEAIKKAVEWLLDQQ 59

Query: 114 NEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159
            EDG F  D      +  +YI    +  +   D   +++ VE+I+ 
Sbjct: 60  QEDGGFGYDGGEYAYSTATYIVALLIYGIAG-DDEKLERGVEWILK 104

Length = 109

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 52.1 bits (126), Expect = 9e-10
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 101 DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143
           D +K+ +Y++  QN DG F G   GE DT ++Y A+  L++L 
Sbjct: 2   DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFD 95
          D+E ++ ++L CQ+  GGF G  G +    YT  A+  LAL  
Sbjct: 2  DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGN---IGHDPHVLYTLSAVQVL 91
           G       L +LG LD+ D +  + W+L  Q   GG+              YT  A   L
Sbjct: 189 GTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYAL 248

Query: 92  ALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142
               K+ D+ DA+K+  +++  QNEDG FS       DT+ +  A+  LS+ 
Sbjct: 249 LALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSLY 300

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 16/204 (7%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF 94
             Y  ++   +L  LD    + V  +IL CQ   GG  G  G + H  YT   +  + L 
Sbjct: 174 ACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILI 233

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKI---NVD 151
           ++VD LD   + N++V  Q  +G F G     VD  +S+      ++LQ+L  I    + 
Sbjct: 234 NEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQ 293

Query: 152 KAVEYI-----------VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDL 200
                I            S    D          S  G  F       + G L H    L
Sbjct: 294 TGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQM-GPLFH-SIAL 351

Query: 201 LGWWLCERQVKSGGLNGRPEKLPD 224
             + L   QV  GGL  +P K  D
Sbjct: 352 QQYILLCSQVLDGGLRDKPGKSRD 375

Length = 439

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG 213
           V+Y++S +N DGG+G   GG S        + ALA  G    V K L   WL  +Q   G
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVKKAL--AWLLSQQNPDG 58

Query: 214 GLNGRPEKLPD 224
           G    P+    
Sbjct: 59  GFGYDPQSNSP 69

Length = 112

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQDE-SGGFAGNIGHDPHVLYTLSAVQVLALF 94
           ++W L++L ILGKLD ++ E++  +IL CQ E SGGF+   G +P V +T   +  L+L 
Sbjct: 255 SFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLI 314

Query: 95  DKVDILDAD 103
           +   +   D
Sbjct: 315 EYKYLNPVD 323

Length = 342

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 37  YWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           +W L++L I+G+L  +++  + ++IL CQD E GGFA   G+   V +T   +  L+L 
Sbjct: 229 WWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD----KAVEYIVSCKN 162
            YI+  QN DGS+S    G+V      +       L       V     KAVE+++  + 
Sbjct: 6   EYILNTQNPDGSWSYSSGGDV-----SVTAALARALALAGDARVLEAIKKAVEWLLDQQQ 60

Query: 163 LDGGFGCTPG 172
            DGGFG   G
Sbjct: 61  EDGGFGYDGG 70

Length = 109

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 37  YWGLTTLDILGKLDAVDEEDV---ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLAL 93
           +  + +L +LGKL+ + E+ +     W++  Q    GF G         Y+      L L
Sbjct: 198 FCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKL 257

Query: 94  FDKVDILDADKVSNYIVGLQNED-GSFSGDIWGEVDTRFSYIAICCLSIL 142
            D   ++D +K  NY++  Q    G F+ +     D   SY+ +  LS++
Sbjct: 258 LDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 35/143 (24%)

Query: 56  DVISWILKCQDESGGFA--------------------GNIGHDP-HVLYTLSAVQVLALF 94
           D ++WIL  Q  +GGFA                    G+I  DP +V  T   +Q L  F
Sbjct: 392 DAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAF 451

Query: 95  DKVDILDADKVSN----YIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKI-- 148
                 +   V      Y+   Q  DGS+ G  WG     ++Y     LS L    +   
Sbjct: 452 -GHRADEIRNVLERALEYLRREQRADGSWFGR-WG---VNYTYGTGFVLSALAAAGRTYR 506

Query: 149 ---NVDKAVEYIVSCKNLDGGFG 168
               V KA ++++S +  DGG+G
Sbjct: 507 NCPEVQKACDWLLSRQMPDGGWG 529

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene , lanosterol , cycloartenol, amyrin, lupeol and isomultiflorenol. Length = 621

>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 46/171 (26%)

Query: 39  GLTTLDILGKLDAVDEE-------DVISWILKCQDESGGFA------------------- 72
            L  L  L +L    E+       D + W+L  Q+ +GGFA                   
Sbjct: 380 ALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFED 439

Query: 73  -GNIGHDP-HVLYTLSAVQVLALFDKVDILDADKVSN-------YIVGLQNEDGSFSGDI 123
            G+I  DP +V  T S ++ L LF K+      ++         Y++  Q  DGS+ G  
Sbjct: 440 FGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGR- 498

Query: 124 WGEVDTRFSY---IAICCLSILQRLDKIN---VDKAVEYIVSCKNLDGGFG 168
           WG     + Y    A+  L+     D  N   + KA ++++S +N DGG+G
Sbjct: 499 WG---VCYIYGTWFALEALAA-AGEDYENSPYIRKACDFLLSKQNPDGGWG 545

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. Length = 634

>gnl|CDD|224603 COG1689, COG1689, Uncharacterized protein conserved in archaea [Function unknown]

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 13  IISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFA 72
           +I   ++    ++  + H      Y  L TL   G  +     +V  + L C D  GGF 
Sbjct: 148 VIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGPKE-----EVRHFELCCGDW-GGFT 201

Query: 73  GN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDT-R 130
                + P++  T  A++ L L      +       +I  LQN++G F       + T  
Sbjct: 202 EVPNSYPPYIEPTFYALRGLELLGGKYCISD--HIRFIRSLQNQNGGFRRSYELGISTFE 259

Query: 131 FSYIAICCLSILQR 144
            +Y A+  L+ L R
Sbjct: 260 NTYRALASLASLHR 273

Length = 274

>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 41/167 (24%)

Query: 39  GLTTLDILGKLDAVDEE-------DVISWILKCQDESGGFA------------------G 73
            L  L  L K     ++       D + W+L  Q+ +GGFA                  G
Sbjct: 97  ALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDG 156

Query: 74  NIGHD-PHVLYTLSAVQVLALFDKVDILDADKVSN-------YIVGLQNEDGSFSGDIWG 125
           +I  D P+V  T S ++ L LF K+      ++         Y+   Q  DGS+ G  WG
Sbjct: 157 DIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGR-WG 215

Query: 126 EVDTRFSY---IAICCLSIL-QRLDKINVDKAVEYIVSCKNLDGGFG 168
                F Y    A+  L+   +  +   V KA ++++S +N DGG+G
Sbjct: 216 ---VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWG 259

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain. Length = 348

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 43  LDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA 102
           L I G L  VD++ +  W+ + Q +SGG  G     P V Y+   +  L + D+V  +D 
Sbjct: 191 LAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDK 250

Query: 103 DKVSNYIVGLQN-EDGSFSGDIWGEVDTRFSYIAICCLSIL 142
           DK++ +I+  Q+ E+G  S      VD   ++  +  LS+L
Sbjct: 251 DKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLL 291

Length = 316

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQDES-GGFAGNIGHDPHVLYTLSAVQVLALF 94
           ++W   +L +L     +D E   +++L  Q    GGFA N    P  L++   +  L+L 
Sbjct: 248 SFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
KOG0366	329	consensus Protein geranylgeranyltransferase type I	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	100.0
KOG0366	329	consensus Protein geranylgeranyltransferase type I	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	100.0
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.97
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	99.97
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.96
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.96
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.96
PLN03012	759	Camelliol C synthase	99.96
PLN02993	763	lupeol synthase	99.95
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.94
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.94
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.93
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.93
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.89
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.88
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.88
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.88
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.88
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.88
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.87
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.86
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.85
PLN03012	759	Camelliol C synthase	99.85
PLN02993	763	lupeol synthase	99.85
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.72
PF07678	246	A2M_comp: A-macroglobulin complement component; In	99.66
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.64
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.6
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.6
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.57
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.51
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.45
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.42
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.4
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	99.27
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.27
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.24
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	98.91
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.86
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	98.39
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	98.38
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	97.88
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	96.77
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	96.6
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	95.37
PLN02592	800	ent-copalyl diphosphate synthase	94.53
PLN02592	800	ent-copalyl diphosphate synthase	94.48
PF05817	636	Ribophorin_II: Oligosaccharyltransferase subunit R	94.22
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	94.12
PLN02279	784	ent-kaur-16-ene synthase	94.12
PLN02279	784	ent-kaur-16-ene synthase	93.36
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	91.59

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=2.3e-55  Score=369.31  Aligned_cols=227  Identities=81%  Similarity=1.454  Sum_probs=215.2

Q ss_pred             CCcccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177            1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (227)
Q Consensus         1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (227)
                      |.++.+++|++||.++++.+++|.+...++++++.+||++.+|++|+..+..+++++++||++||++||||++.++.++|
T Consensus         5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h   84 (316)
T PLN03201          5 MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPH   84 (316)
T ss_pred             hhhccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCccc
Confidence            45789999999999999999999877667889999999999999999877778999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (227)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~  160 (227)
                      +.+||+|+++|.+++..+.+|++++++||+++|++||||.+.++++.|+++||||++++.+++..+.++++++++||++|
T Consensus        85 ~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~sc  164 (316)
T PLN03201         85 ILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSC  164 (316)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence            99999999999999888888999999999999999999999899999999999999999999987778899999999999


Q ss_pred             cCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       161 Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      |++||||+.+|+.++|+.+||||+++|.++|.++.++.+++++||.+||..+|||+|||||++|+||
T Consensus       165 q~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cy  231 (316)
T PLN03201        165 KNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCY  231 (316)
T ss_pred             cCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHH
Confidence            9999999999999999999999999999999888788999999999999999999999999999998

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=8.9e-54  Score=367.80  Aligned_cols=226  Identities=32%  Similarity=0.552  Sum_probs=209.5

Q ss_pred             CCcccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCC
Q 027177            1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (227)
Q Consensus         1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (227)
                      |..+.+++|++|++++-.+ -+..+...+.+++|.+||+|.+|.+|+.. ++..++++++||.+||++||||++.++..+
T Consensus        41 ~~~l~~~~H~~yl~~~l~~-lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~  119 (439)
T PLN02710         41 MLELWREKHLEYLTRGLRQ-LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLP  119 (439)
T ss_pred             cccccHHHHHHHHHHHhhc-CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCc
Confidence            4579999999999997553 34445556899999999999999999983 455788999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhccc---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHH
Q 027177           80 HVLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEY  156 (227)
Q Consensus        80 ~~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~  156 (227)
                      |+..||+|+.+|.+++.   ++.+|++++++||+++|++||||...+++++|+++||||++++.+++.++.+.++++++|
T Consensus       120 hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~  199 (439)
T PLN02710        120 HLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDY  199 (439)
T ss_pred             cHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHH
Confidence            99999999999999985   466899999999999999999999999999999999999999999998877889999999


Q ss_pred             HHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177          157 IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       157 l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      |++||++||||+.+|+.++|+.+|||||++|.+++..+.++.+++++||++||+.+|||+|||||++|+||
T Consensus       200 I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CY  270 (439)
T PLN02710        200 ILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCY  270 (439)
T ss_pred             HHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchh
Confidence            99999999999999999999999999999999999988889999999999999999999999999999998

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-53  Score=332.31  Aligned_cols=225  Identities=69%  Similarity=1.270  Sum_probs=218.0

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (227)
                      .+.+++|++||.+.-++..+|.++-.++-++.++||.+.+|.+++......+++++.|+++||+.+|||++.+|+++|+.
T Consensus        17 ~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll   96 (329)
T KOG0366|consen   17 ELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLL   96 (329)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHH
Confidence            56789999999998777778999988899999999999999999998777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~  162 (227)
                      .|++|+++|++.+.+..+|+++++.|+..+|++||+|.+..|++.|.+++|||+++|+++|.++.++++++++|+++|.|
T Consensus        97 ~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN  176 (329)
T KOG0366|consen   97 YTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYN  176 (329)
T ss_pred             HHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      -||||+.+|+.|||+...||.+++|+++|+++.++.+....||.+||.+.||.+|||-|+||.||
T Consensus       177 ~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCY  241 (329)
T KOG0366|consen  177 FDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCY  241 (329)
T ss_pred             cCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.3e-51  Score=343.81  Aligned_cols=224  Identities=63%  Similarity=1.218  Sum_probs=209.7

Q ss_pred             ccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhcc-CCCCCccCCCCCCCChH
Q 027177            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVL   82 (227)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~   82 (227)
                      +++++|++|++++.+...++.+...+.++++.+||++++|.+|+..+..+++++++||+++| +++|||...++.++|+.
T Consensus         1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~   80 (287)
T cd02894           1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHIL   80 (287)
T ss_pred             CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Confidence            57899999999998865556677778999999999999999999876668999999999999 77999999999899999


Q ss_pred             HHHHHHHHHHhcccCCCCC--HHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177           83 YTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~--~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~  160 (227)
                      +|++|+.+|.+++.++.++  ++++++||+++|++||||++.+++++|+++||+|+++|.+++..+.++++++++||++|
T Consensus        81 ~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~  160 (287)
T cd02894          81 STLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC  160 (287)
T ss_pred             HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence            9999999999987666677  89999999999999999999999999999999999999999987778899999999999


Q ss_pred             cCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       161 Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      |++||||+.+|+.++|+.+||||+++|.++|..+.++++++++||+++|.++|||++||||+||+||
T Consensus       161 q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~y  227 (287)
T cd02894         161 YNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCY  227 (287)
T ss_pred             CCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhH
Confidence            9999999999999999999999999999999988889999999999999999999999999999998

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=2.2e-51  Score=343.18  Aligned_cols=220  Identities=40%  Similarity=0.706  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCC-CCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHH
Q 027177            6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY   83 (227)
Q Consensus         6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~-~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~   83 (227)
                      +++|++|++++.. .+++|...  +.+++|.+||++.+|.+|+. ..+..++++++||+++|++||||++.++.++|+.+
T Consensus         1 ~~~h~~~~~~~l~~~p~~~~~~--d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~   78 (299)
T cd02893           1 REKHIKYLKKSLRQLPSSFTSL--DASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT   78 (299)
T ss_pred             ChHHHHHHHHHhhcCCcccccc--ccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence            5899999999877 55666644  68899999999999999997 34457889999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177           84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (227)
Q Consensus        84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~  160 (227)
                      ||+|+.+|.+++.   .+.++++++++||+++|++||||...+.+++|+++|||+++++.+++.+++++++++++||++|
T Consensus        79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c  158 (299)
T cd02893          79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC  158 (299)
T ss_pred             HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence            9999999999986   3567889999999999999999999999999999999999999999987778899999999999


Q ss_pred             cCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCcc-CCCcCCCCCCCCCCCC
Q 027177          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVVM  227 (227)
Q Consensus       161 Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~k~~D~cy  227 (227)
                      |++||||+.+|+.++|+.+||||+++|.+++..+.++.+++++||+++|.+ +|||+|||||++|+||
T Consensus       159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cy  226 (299)
T cd02893         159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCY  226 (299)
T ss_pred             CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHH
Confidence            999999999999999999999999999999998888999999999999987 9999999999999998

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=2.1e-48  Score=324.83  Aligned_cols=221  Identities=45%  Similarity=0.813  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhcc-CCCCCccCCCCCCCChHH
Q 027177            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLY   83 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~~   83 (227)
                      +++|++||++.++.+ ++.....++++++.+||++.+|.+|+.. ...+++++++||+++| ++||||+..++.++|+..
T Consensus         1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~   79 (286)
T cd02890           1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAS   79 (286)
T ss_pred             ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHH
Confidence            589999999998876 5666666899999999999999999983 3458999999999999 999999999989999999


Q ss_pred             HHHHHHHHHhccc--CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhcc
Q 027177           84 TLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (227)
Q Consensus        84 T~~al~~L~~l~~--~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q  161 (227)
                      |++|+.+|.+++.  .+.++++++++||.++|++||||...+++++|+++||+++.+|.+++....++++++++||++||
T Consensus        80 T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q  159 (286)
T cd02890          80 TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ  159 (286)
T ss_pred             HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence            9999999999987  46778899999999999999999998889999999999999999999876778999999999999


Q ss_pred             CCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCC-CcCCCCCCCCCCCC
Q 027177          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDVVM  227 (227)
Q Consensus       162 ~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~G-Gf~~~~~k~~D~cy  227 (227)
                      ++||||+.+|+.++|+.+||||+++|.+++.+++++++++++||+++|+.+| ||++||||+||+||
T Consensus       160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~y  226 (286)
T cd02890         160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCY  226 (286)
T ss_pred             CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccch
Confidence            9999999999999999999999999999999888899999999999999887 99999999999998

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.8e-48  Score=326.64  Aligned_cols=220  Identities=35%  Similarity=0.618  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHcccC-CCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhcc----CCCCCccCCCC-
Q 027177            6 ADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQ----DESGGFAGNIG-   76 (227)
Q Consensus         6 ~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q----~~dGgf~~~~~-   76 (227)
                      +++|++|+.++.++ +.+|.  ..++++++.+||+|.+|.+|+...   ..++++.++||.+||    ++||||++.++ 
T Consensus         1 ~~~H~~y~~~~l~~lp~~~~--~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~   78 (307)
T cd02895           1 KKKHVKFFQRCLQLLPSSYQ--SLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTL   78 (307)
T ss_pred             ChHHHHHHHHHhhhCCchhh--hhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence            47999999998653 34444  347899999999999999999764   467889999999999    99999999776 


Q ss_pred             ---------CCCChHHHHHHHHHHHhccc-CCCCCHHHHHHHHHhccCCCCCcccCC---CCCCCccchhHHHHHHHHhh
Q 027177           77 ---------HDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI---WGEVDTRFSYIAICCLSILQ  143 (227)
Q Consensus        77 ---------~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGg~~~~~---~~~~d~~~t~~a~~~L~~~g  143 (227)
                               .++|+..||+|+.+|.+++. .+.+|++++++||+++|++||||+..+   .+++|+++||||+++|.+++
T Consensus        79 ~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~  158 (307)
T cd02895          79 GLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD  158 (307)
T ss_pred             ccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence                     47999999999999999975 345789999999999999999999886   78999999999999999999


Q ss_pred             ccC--cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCC---CCCHHHHHHHHHccCccCCCcCCC
Q 027177          144 RLD--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---HVDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       144 ~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~---~~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      ..+  .++.+++++||++||++||||+..|+.|+|..+||||+++|.+++..+   .++.+++++||++||+.+|||++|
T Consensus       159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr  238 (307)
T cd02895         159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR  238 (307)
T ss_pred             CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence            865  578999999999999999999999999999999999999999999876   578999999999999999999999


Q ss_pred             CCCCCCCCC
Q 027177          219 PEKLPDVVM  227 (227)
Q Consensus       219 ~~k~~D~cy  227 (227)
                      |||++|+||
T Consensus       239 ~~k~~D~cy  247 (307)
T cd02895         239 PNKPADTCY  247 (307)
T ss_pred             CCCCCccch
Confidence            999999998

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=2.2e-47  Score=318.32  Aligned_cols=225  Identities=23%  Similarity=0.387  Sum_probs=209.3

Q ss_pred             cccHHHHHHHHHHcc-cCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcC--HHHHHHHHHhccCCCCCccCCCCCCC
Q 027177            3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKCQDESGGFAGNIGHDP   79 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~--~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (227)
                      .++++++++||+++| +++|+|......++++..||.++.+|.+++....++  ++++++||+++|++||||+..++.++
T Consensus        48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~  127 (287)
T cd02894          48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEV  127 (287)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCc
Confidence            357899999999999 679999887766778899999999999987644455  89999999999999999999888899


Q ss_pred             ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHh
Q 027177           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (227)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~  159 (227)
                      |+..||+|+.+|.+++..+.++++++++||.++|++||||++++++++|+++|||++++|.++|..+.++++++++||.+
T Consensus       128 d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~  207 (287)
T cd02894         128 DTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCE  207 (287)
T ss_pred             hHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHH
Confidence            99999999999999988777889999999999999999999999999999999999999999998877889999999999


Q ss_pred             ccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccC-ccCCCcCCCCCCCCCCCC
Q 027177          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       160 ~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~k~~D~cy  227 (227)
                      +|+++|||..+|+.++|+.+|||++++|.+++..+..+.+++.+||+++| .++|||+++|+|++|.||
T Consensus       208 ~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~h  276 (287)
T cd02894         208 RQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFH  276 (287)
T ss_pred             hCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhH
Confidence            99999999999999999999999999999999876678999999999999 579999999999999996

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=5.8e-47  Score=317.50  Aligned_cols=225  Identities=23%  Similarity=0.353  Sum_probs=207.8

Q ss_pred             cccHHHHHHHHHHcc----cCCCCcchhhc----------ccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCC
Q 027177            3 ELAADKHVKYIISVE----KKKDSFESVVM----------EHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDE   67 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q----~~dg~~~~~~~----------~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~   67 (227)
                      ++++++.++||.++|    +++|+|.....          +.++++.||||+.+|.+|+.. ..++++++++||+++|++
T Consensus        48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~  127 (307)
T cd02895          48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP  127 (307)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence            578899999999999    99999987654          478999999999999999864 346889999999999999


Q ss_pred             CCCccCCC---CCCCChHHHHHHHHHHHhcccCC--CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHh
Q 027177           68 SGGFAGNI---GHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL  142 (227)
Q Consensus        68 dGgf~~~~---~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~  142 (227)
                      ||||+..+   +.++|+..||+|+.++.+++..+  .++++++++||.++|++||||+..+..++|..+|||++++|.++
T Consensus       128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL  207 (307)
T cd02895         128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLL  207 (307)
T ss_pred             CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHc
Confidence            99999987   78999999999999999998765  57899999999999999999999999999999999999999999


Q ss_pred             hccC---cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc-cCCCcCCC
Q 027177          143 QRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGR  218 (227)
Q Consensus       143 g~~~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~-~~GGf~~~  218 (227)
                      +...   .++.+++++||+++|+++|||+.+|++++|+.+|||++++|.+++..+.++.+++.+||+++|. .+|||+++
T Consensus       208 ~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~  287 (307)
T cd02895         208 GKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKN  287 (307)
T ss_pred             CCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCC
Confidence            9864   6789999999999999999999999999999999999999999998877899999999999874 69999999


Q ss_pred             CCCCCCCCC
Q 027177          219 PEKLPDVVM  227 (227)
Q Consensus       219 ~~k~~D~cy  227 (227)
                      |+|.||.|+
T Consensus       288 p~~~~D~~h  296 (307)
T cd02895         288 PDSHPDPLH  296 (307)
T ss_pred             CCCCCChhH
Confidence            999999985

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-47  Score=304.48  Aligned_cols=225  Identities=44%  Similarity=0.745  Sum_probs=208.7

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHhccCCCCCccCCCCCCCCh
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~   81 (227)
                      .+.+++|++|+.......-.+.++-.++++.|.+||...++.+++... .+..++.+.+++.|+.+.|+|+..+++++|+
T Consensus        25 ~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL  104 (342)
T COG5029          25 QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHL  104 (342)
T ss_pred             ccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhH
Confidence            577899999999986655455666667899999999999999999875 5689999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccC---CCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHH
Q 027177           82 LYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIV  158 (227)
Q Consensus        82 ~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~  158 (227)
                      .+|++|+++|.+++..   +.++++++.+||.++|+|||+|....+++.|.+..|+|+.+|.++|..+.+..+.+++||+
T Consensus       105 ~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~  184 (342)
T COG5029         105 ASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLK  184 (342)
T ss_pred             HHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            9999999999999754   4556788999999999999999998889999999999999999999988889999999999


Q ss_pred             hccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCC-HHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177          159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD-KDLLGWWLCERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       159 ~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~-~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      +|||.||||+..|+.|+|..+||||+++|++++.++..+ ++++++||.+||-+.|||+||+||.+|+||
T Consensus       185 kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CY  254 (342)
T COG5029         185 KCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCY  254 (342)
T ss_pred             HhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchh
Confidence            999999999999999999999999999999999998887 799999999999999999999999999999

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=9.3e-46  Score=311.14  Aligned_cols=225  Identities=22%  Similarity=0.378  Sum_probs=211.4

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (227)
                      ..++++.++||.++|+++|+|+..+.+++++..||.++.+|.+++....++++++++||.++|++||||...++.+.|+.
T Consensus        55 ~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r  134 (316)
T PLN03201         55 DVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTR  134 (316)
T ss_pred             cccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHH
Confidence            46889999999999999999998887778999999999999999776667899999999999999999999888899999


Q ss_pred             HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~  162 (227)
                      .||+|++++.+++..+.++++++++||.++|++||||+.+|.+++|..+|||++++|.++|..+..+.+++++||.++|.
T Consensus       135 ~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~  214 (316)
T PLN03201        135 FSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQV  214 (316)
T ss_pred             HHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCC
Confidence            99999999999998777889999999999999999999999999999999999999999998777788999999999999


Q ss_pred             CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCcc-CCCcCCCCCCCCCCCC
Q 027177          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVVM  227 (227)
Q Consensus       163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~k~~D~cy  227 (227)
                      ++|||..+|++.+|+.||||++++|.+++..+.++.+++.+||+++|++ .|||+++|+|.||.|+
T Consensus       215 ~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~h  280 (316)
T PLN03201        215 KSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFH  280 (316)
T ss_pred             CCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhH
Confidence            9999999999999999999999999999988778999999999999974 8999999999999885

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-46  Score=304.80  Aligned_cols=220  Identities=31%  Similarity=0.590  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHcccC-CCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCCChHH
Q 027177            6 ADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY   83 (227)
Q Consensus         6 ~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~   83 (227)
                      +++|..||.+.-+. +-.|.  -.+.++.|..||.+.+|++|+.. +....+++|+||.+||.|.|||++.||+.+|++.
T Consensus        74 r~kH~~YL~~~Lr~Lp~~~~--~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~  151 (423)
T KOG0365|consen   74 RQKHLMYLDKMLRQLPSQYT--CLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAP  151 (423)
T ss_pred             HHHHHHHHHHHHHhCCCccc--ccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhH
Confidence            89999999996432 33454  34799999999999999999964 3446789999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177           84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (227)
Q Consensus        84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~  160 (227)
                      ||+|+.+|-+++.   .+.|+++++.+||.++.++||||..+..++.|++.+|||+++-.+++.+.++-.+...+||.+|
T Consensus       152 TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~C  231 (423)
T KOG0365|consen  152 TYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASC  231 (423)
T ss_pred             HHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Confidence            9999999999975   4678899999999999999999999999999999999999999999987777778899999999


Q ss_pred             cCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc-cCCCcCCCCCCCCCCCC
Q 027177          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       161 Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~k~~D~cy  227 (227)
                      |+.+|||+..|+.|.|..+||||+++|++++..+..+.+++.+|..+||. ..|||+||.||++|.||
T Consensus       232 QtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCY  299 (423)
T KOG0365|consen  232 QTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCY  299 (423)
T ss_pred             ccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhH
Confidence            99999999999999999999999999999999999999999999999997 89999999999999998

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=3.7e-45  Score=305.24  Aligned_cols=225  Identities=26%  Similarity=0.488  Sum_probs=210.3

Q ss_pred             cccHHHHHHHHHHcc-cCCCCcchhhcccchHHHHHHHHHHHHHhCC--CCCcCHHHHHHHHHhccCCCCCccCCCCCCC
Q 027177            3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGK--LDAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~--~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (227)
                      ..+++++++||+++| ++||+|.....+++++..||+++.+|.+++.  ...++++++++||.++|++||||...++.++
T Consensus        46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~  125 (286)
T cd02890          46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEV  125 (286)
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCc
Confidence            467899999999999 9999999887788899999999999999997  3456889999999999999999999888899


Q ss_pred             ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHh
Q 027177           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (227)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~  159 (227)
                      |+..||+|+.+|.+++.....+++++++||.++|++||||+.++.+++|+.+|||++++|.+++..+.++++++++||++
T Consensus       126 d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~  205 (286)
T cd02890         126 DTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVE  205 (286)
T ss_pred             hHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            99999999999999987666779999999999999999999999999999999999999999999878899999999999


Q ss_pred             ccCCCC-CcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHH-ccCccCCCcCCCCCCCCCCCC
Q 027177          160 CKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC-ERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       160 ~Q~~dG-Gf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~-~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      +|+++| ||..+|+.++|+.+|||++++|.+++..+..+.+++.+||+ .+|.++|||+++|+|++|.||
T Consensus       206 ~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~  275 (286)
T cd02890         206 RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYH  275 (286)
T ss_pred             hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchh
Confidence            999998 99999999999999999999999999876688999999999 678999999999999999996

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=4.7e-43  Score=293.04  Aligned_cols=223  Identities=23%  Similarity=0.377  Sum_probs=204.9

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCC
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (227)
                      +.++++.++||+++|+++|+|...+.+.+++..||+|+.+|.+++..   ..++++++++||.++|++||||...++.++
T Consensus        46 ~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~  125 (299)
T cd02893          46 QSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEV  125 (299)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence            35679999999999999999988877789999999999999999874   345788999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHh
Q 027177           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (227)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~  159 (227)
                      |+..||+|+.++.+++.....+++++++||+++|++||||++.|++++|..+|||++++|.+++..+.++++++++||++
T Consensus       126 D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~  205 (299)
T cd02893         126 DVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVA  205 (299)
T ss_pred             hHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHh
Confidence            99999999999999987766678999999999999999999999999999999999999999998777899999999999


Q ss_pred             ccCC-CCCcCCCCCCCCchhhchHHHHHHHHhcCC-------------CCCCHHHHHHHHHcc-CccCCCcCCCCCCCCC
Q 027177          160 CKNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCER-QVKSGGLNGRPEKLPD  224 (227)
Q Consensus       160 ~Q~~-dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-------------~~~~~~~~~~wL~~~-Q~~~GGf~~~~~k~~D  224 (227)
                      +|++ +|||..+|++.+|++||||++++|.+++..             ..++.+++.+||+.+ |..+|||+++|+|+||
T Consensus       206 ~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D  285 (299)
T cd02893         206 RQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRD  285 (299)
T ss_pred             hcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCC
Confidence            9988 999999999999999999999999999864             236789999999965 5789999999999999


Q ss_pred             C
Q 027177          225 V  225 (227)
Q Consensus       225 ~  225 (227)
                      .
T Consensus       286 ~  286 (299)
T cd02893         286 F  286 (299)
T ss_pred             c
Confidence            4

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=4.6e-43  Score=301.62  Aligned_cols=223  Identities=19%  Similarity=0.348  Sum_probs=205.7

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCC
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (227)
                      +.++++.++||.++|+++|+|+..+++.+++..||+++.+|.+++..   ..++++++++||+++|++||||...++.++
T Consensus        91 ~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~  170 (439)
T PLN02710         91 DELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEM  170 (439)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCC
Confidence            45778999999999999999998888889999999999999999864   356899999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHh
Q 027177           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (227)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~  159 (227)
                      |+..||+|++++.+++.++..+++++++||.+||+.||||++.|++++|..+|||++++|.++|..+.++++++++||.+
T Consensus       171 D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~  250 (439)
T PLN02710        171 DVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVF  250 (439)
T ss_pred             CcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHH
Confidence            99999999999999998777789999999999999999999999999999999999999999999888899999999999


Q ss_pred             ccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC--------------------------------------------
Q 027177          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH--------------------------------------------  195 (227)
Q Consensus       160 ~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~--------------------------------------------  195 (227)
                      +|+.+|||..+|++.+|+.|+||++++|.++++.+.                                            
T Consensus       251 rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T PLN02710        251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKV  330 (439)
T ss_pred             hcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999986411                                            


Q ss_pred             ---------------CCHHHHHHHHHcc-CccCCCcCCCCCCCCCC
Q 027177          196 ---------------VDKDLLGWWLCER-QVKSGGLNGRPEKLPDV  225 (227)
Q Consensus       196 ---------------~~~~~~~~wL~~~-Q~~~GGf~~~~~k~~D~  225 (227)
                                     .+.+++.+||+.+ |.++|||+.+|+|.||.
T Consensus       331 ~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~  376 (439)
T PLN02710        331 GFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDY  376 (439)
T ss_pred             ccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCch
Confidence                           3456889999998 57789999999999994

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-43  Score=280.47  Aligned_cols=223  Identities=35%  Similarity=0.614  Sum_probs=195.2

Q ss_pred             cccHHHHHHHHHHc-ccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCC---C-----CccC
Q 027177            3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES---G-----GFAG   73 (227)
Q Consensus         3 ~~~~~~~~~yl~~~-q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~d---G-----gf~~   73 (227)
                      ++.++||++|+++. |--+-.|...  +.+++..+||++.+|++|+..+.++++..|+|+.+.|-..   +     ||-+
T Consensus        10 ~~~~~kH~~ff~RhL~llP~~y~sh--d~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G   87 (347)
T KOG0367|consen   10 RFERKKHIKFFERHLQLLPSPYQSH--DTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG   87 (347)
T ss_pred             hhhHHHHHHHHHHHHHhCCCccccc--ccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence            56789999999996 4455666544  5788999999999999999988888999999999987421   2     3433


Q ss_pred             CC----------CCCCChHHHHHHHHHHHhccc-CCCCCHHHHHHHHHhccCCCCCcccCC-CCCCCccchhHHHHHHHH
Q 027177           74 NI----------GHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYIAICCLSI  141 (227)
Q Consensus        74 ~~----------~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGg~~~~~-~~~~d~~~t~~a~~~L~~  141 (227)
                      ..          -.++|++.||++|..|..+++ ++.+|++.+++++..+|++||+|.... ++++|++++|||+++.++
T Consensus        88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ym  167 (347)
T KOG0367|consen   88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYM  167 (347)
T ss_pred             eccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHH
Confidence            21          135799999999999999976 578899999999999999999998654 468999999999999999


Q ss_pred             hhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC--CC----CCHHHHHHHHHccCccCCCc
Q 027177          142 LQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--HH----VDKDLLGWWLCERQVKSGGL  215 (227)
Q Consensus       142 ~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~--~~----~~~~~~~~wL~~~Q~~~GGf  215 (227)
                      ++.+..++.++++.||++||+.||||+..|+.|+|..+|+||+++|.+++++  +.    .++++.++|+..||..+|||
T Consensus       168 Ld~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGf  247 (347)
T KOG0367|consen  168 LDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGF  247 (347)
T ss_pred             hccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCc
Confidence            9998899999999999999999999999999999999999999999999986  32    34899999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 027177          216 NGRPEKLPDVVM  227 (227)
Q Consensus       216 ~~~~~k~~D~cy  227 (227)
                      +||+||++|+||
T Consensus       248 qGR~NKp~DTCY  259 (347)
T KOG0367|consen  248 QGRTNKPVDTCY  259 (347)
T ss_pred             CCCCCCCchhHH
Confidence            999999999998

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-38  Score=247.12  Aligned_cols=224  Identities=22%  Similarity=0.373  Sum_probs=211.1

Q ss_pred             CcccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCCh
Q 027177            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (227)
Q Consensus         2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~   81 (227)
                      .++++|+.+.|+++||+.+|+|...++.++.+..|..||.+|++.+..+..++++.+.|+...|++||+|.+-.-.+-+.
T Consensus        64 e~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDT  143 (329)
T KOG0366|consen   64 ERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDT  143 (329)
T ss_pred             chhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccch
Confidence            36789999999999999999999998888888899999999999998766799999999999999999998865557788


Q ss_pred             HHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhcc
Q 027177           82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (227)
Q Consensus        82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q  161 (227)
                      ..+++|+..|++|+.++.++++++|+|+.+|.|.||||+..|+.+++....||.+++|+++|.++..+.+..-.||...|
T Consensus       144 Rfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ  223 (329)
T KOG0366|consen  144 RFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQ  223 (329)
T ss_pred             hhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc-cCCCcCCCCCCCCCC
Q 027177          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDV  225 (227)
Q Consensus       162 ~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~k~~D~  225 (227)
                      .+.||...+|.+-||+.+.+|++++|+++|+++-++.+++.+||+.+|- +.|||+.||+..+|+
T Consensus       224 ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~  288 (329)
T KOG0366|consen  224 LPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDI  288 (329)
T ss_pred             CCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccH
Confidence            9999999999999999999999999999999988999999999999996 899999999988885

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-36  Score=242.33  Aligned_cols=222  Identities=21%  Similarity=0.414  Sum_probs=204.2

Q ss_pred             ccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (227)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (227)
                      .++|+.+-|+.+++.+.|+|+..+++.+.+..||+++.+|.+++..   ..++++...+||..+|+|||+|-...-.+.+
T Consensus        75 ~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevD  154 (342)
T COG5029          75 VDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVD  154 (342)
T ss_pred             hhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcch
Confidence            4678888999999999999999999999999999999999999754   3456778999999999999999876656788


Q ss_pred             hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCccc-HHHHHHHHHh
Q 027177           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN-VDKAVEYIVS  159 (227)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~-~~~~~~~l~~  159 (227)
                      ....|.|+.++.+++.++..+.+.+++||++||+.||||+..|..+++..+||||+++|++++.++..+ +|++++||..
T Consensus       155 tr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~  234 (342)
T COG5029         155 TRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAE  234 (342)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            888999999999999888778899999999999999999999999999999999999999999988777 7999999999


Q ss_pred             ccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCcc-CCCcCCCCCCCCCC
Q 027177          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDV  225 (227)
Q Consensus       160 ~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~k~~D~  225 (227)
                      .|.+.|||..++++-+|+.+.||++++|++++..+-++.+++.+||+.+|.+ .|||+.||++.+|.
T Consensus       235 RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~  301 (342)
T COG5029         235 RQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDV  301 (342)
T ss_pred             cccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchH
Confidence            9999999999999999999999999999999988778999999999999755 99999999999983

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-32  Score=219.94  Aligned_cols=192  Identities=21%  Similarity=0.321  Sum_probs=177.0

Q ss_pred             CcccHHHHHHHHHHcccCCCCcchhh-cccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177            2 GELAADKHVKYIISVEKKKDSFESVV-MEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (227)
Q Consensus         2 ~~~~~~~~~~yl~~~q~~dg~~~~~~-~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (227)
                      +++|++..++++..+|++||+|.... +.+++|+.+|+|++++.+|+....++.++.+.||+++|+-||||+..++.++|
T Consensus       123 srlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsH  202 (347)
T KOG0367|consen  123 SRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESH  202 (347)
T ss_pred             hhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCC
Confidence            57999999999999999999997664 34789999999999999999766689999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccC--C----CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHH
Q 027177           81 VLYTLSAVQVLALFDKV--D----ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV  154 (227)
Q Consensus        81 ~~~T~~al~~L~~l~~~--~----~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~  154 (227)
                      .-+|+||+++|++++++  +    ..++++.++|+..+|..+|||.+++++..|++|+||..++|.+++....++.++..
T Consensus       203 gG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr  282 (347)
T KOG0367|consen  203 GGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLR  282 (347)
T ss_pred             cchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHH
Confidence            99999999999999875  2    33479999999999999999999999999999999999999999987777788999


Q ss_pred             HHHHhccCCC-CCcCCCCCCCCchhhchHHHHHHHHhcCC
Q 027177          155 EYIVSCKNLD-GGFGCTPGGESHSGQIFCCVGALAIAGAL  193 (227)
Q Consensus       155 ~~l~~~Q~~d-GGf~~~~~~~~~~~~T~~al~aL~~~g~~  193 (227)
                      +||++||.+- |||...|+..||+.+||++++||++++..
T Consensus       283 ~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~  322 (347)
T KOG0367|consen  283 KFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEK  322 (347)
T ss_pred             HHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCC
Confidence            9999999886 99999999999999999999999999864

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.97  E-value=3e-30  Score=213.97  Aligned_cols=222  Identities=27%  Similarity=0.349  Sum_probs=192.2

Q ss_pred             ccHHHHHHHHHHcccCCCCcchhhcc-cchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCC--
Q 027177            4 LAADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH--   77 (227)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~--   77 (227)
                      .+++++++||.+.|++||+|.++... .++++.|++++.+|..++..   ....++++++||.++|++||+|......  
T Consensus        52 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~  131 (300)
T cd00688          52 ENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNH  131 (300)
T ss_pred             HHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCC
Confidence            46789999999999999999988655 67899999999999999864   2346889999999999999999876543  


Q ss_pred             -----CCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHH
Q 027177           78 -----DPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD  151 (227)
Q Consensus        78 -----~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~  151 (227)
                           .+++..|++++.+|..++... ...++++++||.++|++||||  .++..+++..|++++.+|..++......++
T Consensus       132 ~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~  209 (300)
T cd00688         132 RIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAK  209 (300)
T ss_pred             cccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHH
Confidence                 678899999999999987643 335789999999999999999  467778899999999999998875456789


Q ss_pred             HHHHHHHhccCCCCCcCCCC---CCCCchhhchHHHHHHHHhcCC-CCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177          152 KAVEYIVSCKNLDGGFGCTP---GGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       152 ~~~~~l~~~Q~~dGGf~~~~---~~~~~~~~T~~al~aL~~~g~~-~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      ++++||+++|.++|||...+   ...++...|++++.+|..++.. +...++++++||+++|..+|||...|++.+|+++
T Consensus       210 ~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~  289 (300)
T cd00688         210 KALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQH  289 (300)
T ss_pred             HHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchh
Confidence            99999999999999999775   5678899999999999998864 4456899999999999999999999999999874

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2e-30  Score=211.33  Aligned_cols=222  Identities=21%  Similarity=0.350  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (227)
                      .++++.||..+|.|.|+|+.-++|-..+..||.+|.+|.+++..+   .+++++..+||.++.++||||-...+.+.++.
T Consensus       122 ~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvR  201 (423)
T KOG0365|consen  122 KENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVR  201 (423)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHH
Confidence            568999999999999999999999889999999999999999863   57999999999999999999999888899999


Q ss_pred             HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~  162 (227)
                      +.|+|+..-.+++-..+.--+...+||.+||+.+|||++.|.-+++..||||++++|.+++..+..+.+++.+|..+.|.
T Consensus       202 s~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm  281 (423)
T KOG0365|consen  202 SAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQM  281 (423)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhh
Confidence            99999998888876443224678999999999999999999999999999999999999999889999999999999997


Q ss_pred             -CCCCcCCCCCCCCchhhchHHHHHHHHhcCC-----C-----CCCHHHHHHHHHcc-CccCCCcCCCCCCCCC---CCC
Q 027177          163 -LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-----H-----HVDKDLLGWWLCER-QVKSGGLNGRPEKLPD---VVM  227 (227)
Q Consensus       163 -~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-----~-----~~~~~~~~~wL~~~-Q~~~GGf~~~~~k~~D---~cy  227 (227)
                       .+|||..+.++-.|..++||.-+...++...     +     -.+.+++.+|++.+ |.++|||..-|+|++|   +||
T Consensus       282 ~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCY  361 (423)
T KOG0365|consen  282 RFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCY  361 (423)
T ss_pred             hhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhh
Confidence             6999999999999999999976655554321     1     14688899999985 9999999999999999   565

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.96  E-value=8.2e-29  Score=225.11  Aligned_cols=219  Identities=24%  Similarity=0.285  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHccc--------------CCCCcchhhcc----cchHHHHHHHHHHHHHhCCC--------CCcCHHHHHH
Q 027177            6 ADKHVKYIISVEK--------------KKDSFESVVME----HLRLNGAYWGLTTLDILGKL--------DAVDEEDVIS   59 (227)
Q Consensus         6 ~~~~~~yl~~~q~--------------~dg~~~~~~~~----~~~~~~~y~~l~~l~ll~~~--------~~~~~~~~i~   59 (227)
                      .+++++||++.|.              ++|+|.+...+    .++.  |--++.+|..+...        ....++++++
T Consensus       330 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~--Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~  407 (634)
T TIGR03463       330 LERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDC--TAEALSASLVLEPLGLNPEERVPQARLQDAVE  407 (634)
T ss_pred             HHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCcccc--HHHHHHHHHHHhhcCCcccccccHHHHHHHHH
Confidence            4689999999984              57888766322    2332  43466666654321        1125678999


Q ss_pred             HHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCCC------C--CHHHHHHHHH
Q 027177           60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDI------L--DADKVSNYIV  110 (227)
Q Consensus        60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~------~--~~~~~~~~l~  110 (227)
                      ||+++||+||||+.+..                     ..+++..|..+|.+|..+.....      +  .++++++||+
T Consensus       408 ~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~  487 (634)
T TIGR03463       408 FILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLR  487 (634)
T ss_pred             HHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence            99999999999995432                     35688999999999988764321      1  2688999999


Q ss_pred             hccCCCCCcccCCCCCCCccchhHHHHHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCC----------CCCCCchhh
Q 027177          111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQ  179 (227)
Q Consensus       111 ~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~-~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~~~~~~  179 (227)
                      +.|++||+|.+ .|+......|++++.+|...|.. ..+.++++++||+++|++||||+..          ++.+++++.
T Consensus       488 ~~Q~~dGsW~g-~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~  566 (634)
T TIGR03463       488 SRQREDGSFPG-SWGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVM  566 (634)
T ss_pred             HhcCCCCCccc-cCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHH
Confidence            99999999976 46655556688888999888863 4567899999999999999999863          344688999


Q ss_pred             chHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCC--CCCCCCCC
Q 027177          180 IFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVVM  227 (227)
Q Consensus       180 T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~k~~D~cy  227 (227)
                      |++||.+|..+|..+...++++++||+++|.++|||...+  +-.+-.||
T Consensus       567 TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~  616 (634)
T TIGR03463       567 TSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAM  616 (634)
T ss_pred             HHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCccee
Confidence            9999999999997766779999999999999999998765  55666665

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.96  E-value=4.4e-28  Score=200.98  Aligned_cols=218  Identities=34%  Similarity=0.519  Sum_probs=182.8

Q ss_pred             HHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC------CCcCHHHHHHHHHhccCCCCCccCCCCC-CC
Q 027177            7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL------DAVDEEDVISWILKCQDESGGFAGNIGH-DP   79 (227)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~------~~~~~~~~i~~l~~~q~~dGgf~~~~~~-~~   79 (227)
                      +++++||++.|.++|++.... ....++.+++++.++..+...      ....++++++||.+.|++||||+...+. .+
T Consensus         2 ~~~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~   80 (300)
T cd00688           2 EKHLKYLLRYPYGDGHWYQSL-CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYP   80 (300)
T ss_pred             hhHHHHHHHccccCCCccccC-CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCc
Confidence            689999999999999873322 244677888999988887652      2347889999999999999999998776 78


Q ss_pred             ChHHHHHHHHHHHhcccC---CCCCHHHHHHHHHhccCCCCCcccCCCC-------CCCccchhHHHHHHHHhhccC-cc
Q 027177           80 HVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWG-------EVDTRFSYIAICCLSILQRLD-KI  148 (227)
Q Consensus        80 ~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGg~~~~~~~-------~~d~~~t~~a~~~L~~~g~~~-~~  148 (227)
                      ++..|++++.+|..++..   ....++++++||.+.|++||+|......       .+++..|++++.+|..++... ..
T Consensus        81 ~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~  160 (300)
T cd00688          81 SLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDP  160 (300)
T ss_pred             chHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcH
Confidence            999999999999988763   2234788999999999999999875432       578888999999999988743 56


Q ss_pred             cHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCC---CCCCCC
Q 027177          149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP---EKLPDV  225 (227)
Q Consensus       149 ~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~---~k~~D~  225 (227)
                      .++++++||.++|++||||  .+..++++..|++++.+|..++......++++++||+++|..+|||...+   ++.+|.
T Consensus       161 ~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~  238 (300)
T cd00688         161 LIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDS  238 (300)
T ss_pred             HHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCch
Confidence            7899999999999999999  56678999999999999999987545668999999999999999999886   777777


Q ss_pred             CC
Q 027177          226 VM  227 (227)
Q Consensus       226 cy  227 (227)
                      |+
T Consensus       239 ~~  240 (300)
T cd00688         239 CY  240 (300)
T ss_pred             HH
Confidence            64

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.96  E-value=1.7e-27  Score=216.40  Aligned_cols=213  Identities=20%  Similarity=0.198  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHccc-------------CCCCcchhhcc--cchHHHHHHHHHHHHHhCCCC----CcCHHHHHHHHHhccC
Q 027177            6 ADKHVKYIISVEK-------------KKDSFESVVME--HLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD   66 (227)
Q Consensus         6 ~~~~~~yl~~~q~-------------~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~----~~~~~~~i~~l~~~q~   66 (227)
                      ..++.+||++.|.             +.|+|++....  .+++..|-.++.+|..++.+.    ...++++++||+++|+
T Consensus       338 l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn  417 (635)
T TIGR01507       338 LVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQS  417 (635)
T ss_pred             HHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcC
Confidence            4688999999863             35777655322  356777888888888875322    2368899999999999


Q ss_pred             CCCCccCCCC-------------------CCCChHHHHHHHHHHHhcccC-CCCCHHHHHHHHHhccCCCCCcccCCCCC
Q 027177           67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE  126 (227)
Q Consensus        67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~  126 (227)
                      +||||+.+..                   +++.+..|..++.+|...+.. ....++++++||++.|++||||.+ .++.
T Consensus       418 ~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g-~wg~  496 (635)
T TIGR01507       418 SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFG-RWGV  496 (635)
T ss_pred             CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCcc-CCCC
Confidence            9999976431                   235677899999999887532 122378999999999999999965 3555


Q ss_pred             CCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCCC----------CCCCchhhchHHHHHHHHhcCCCC
Q 027177          127 VDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGALHH  195 (227)
Q Consensus       127 ~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~~~~~~T~~al~aL~~~g~~~~  195 (227)
                      .++..|..++.+|...|. ...+.++++++||+++|++||||++..          ..+++++.|++||.+|..++..+.
T Consensus       497 ~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~  576 (635)
T TIGR01507       497 NYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAES  576 (635)
T ss_pred             ccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence            444445556666766664 235678999999999999999999652          236889999999999999997766


Q ss_pred             CCHHHHHHHHHccCccCCCcCCCC
Q 027177          196 VDKDLLGWWLCERQVKSGGLNGRP  219 (227)
Q Consensus       196 ~~~~~~~~wL~~~Q~~~GGf~~~~  219 (227)
                      ..++++++||+++|+++|||.-..
T Consensus       577 ~~I~rav~~L~~~Q~~dG~W~e~~  600 (635)
T TIGR01507       577 EAARRGVQYLVETQRPDGGWDEPY  600 (635)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCcc
Confidence            679999999999999999997653

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>PLN03012 Camelliol C synthase

Probab=99.96  E-value=1.2e-27  Score=217.44  Aligned_cols=174  Identities=22%  Similarity=0.277  Sum_probs=138.6

Q ss_pred             CHHHHHHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCC------CC--CHH
Q 027177           53 DEEDVISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DAD  103 (227)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~  103 (227)
                      ...++++||++.||+||||+.+..                     +++...+|..+|.+|.+++...      ++  .++
T Consensus       514 ~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~  593 (759)
T PLN03012        514 QLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIK  593 (759)
T ss_pred             HHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHH
Confidence            467999999999999999986643                     3567788999999998876531      12  268


Q ss_pred             HHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCCC---------
Q 027177          104 KVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPG---------  172 (227)
Q Consensus       104 ~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~---------  172 (227)
                      ++++||++.|++||||.+ .|+...+.-|.+++.+|...|..  ..+.++|+++||++.|++||||+++..         
T Consensus       594 rAv~~L~~~Q~~DGsW~G-~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~  672 (759)
T PLN03012        594 KAAEYIENIQMLDGSWYG-NWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA  672 (759)
T ss_pred             HHHHHHHHhcCCCCCCcc-cccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence            899999999999999997 45554444455667778777873  236799999999999999999998742         


Q ss_pred             ---CCCchhhchHHHHHHHHhcCCCC--CCHHHHHHHHHccCccCCCcCCCC--CCCCCCCC
Q 027177          173 ---GESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGRP--EKLPDVVM  227 (227)
Q Consensus       173 ---~~~~~~~T~~al~aL~~~g~~~~--~~~~~~~~wL~~~Q~~~GGf~~~~--~k~~D~cy  227 (227)
                         .+|+++.|+|||.+|..+|..+.  ..++|+++||+++|.++|+|.-..  +.++-.||
T Consensus       673 ~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~  734 (759)
T PLN03012        673 QEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCL  734 (759)
T ss_pred             CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceE
Confidence               35889999999999999997643  368999999999999999996543  44555564

>PLN02993 lupeol synthase

Probab=99.95  E-value=4.1e-27  Score=214.52  Aligned_cols=219  Identities=20%  Similarity=0.261  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHcccC---------------CCCcchhhcc----cchHHHHHHHHHHHHHhCCC------C---CcCHHHH
Q 027177            6 ADKHVKYIISVEKK---------------KDSFESVVME----HLRLNGAYWGLTTLDILGKL------D---AVDEEDV   57 (227)
Q Consensus         6 ~~~~~~yl~~~q~~---------------dg~~~~~~~~----~~~~~~~y~~l~~l~ll~~~------~---~~~~~~~   57 (227)
                      ..++.+||++.|..               .|+|.+...+    .+|.  |-=+++++.+|...      .   ...+.++
T Consensus       441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDd--TAe~lka~l~l~~~~~~~~~~~~~~~~l~~a  518 (763)
T PLN02993        441 LRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDC--TAEALKCCMLLSMMPADVVGQKIDPEQLYDS  518 (763)
T ss_pred             HHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCc--hHHHHHHHHHHhhCccccccccchHHHHHHH
Confidence            45788999998763               2666433211    2332  32355543333321      1   1246699


Q ss_pred             HHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccC------CCC--CHHHHHHH
Q 027177           58 ISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV------DIL--DADKVSNY  108 (227)
Q Consensus        58 i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~------~~~--~~~~~~~~  108 (227)
                      ++||++.||+||||+.+..                     +++.+..|..+|.+|..++..      +++  .++++++|
T Consensus       519 v~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~y  598 (763)
T PLN02993        519 VNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQF  598 (763)
T ss_pred             HHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHH
Confidence            9999999999999997642                     257889999999999988642      111  26889999


Q ss_pred             HHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccC--cccHHHHHHHHHhccCCCCCcCCCC------------CCC
Q 027177          109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP------------GGE  174 (227)
Q Consensus       109 l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~------------~~~  174 (227)
                      |++.|++||+|.+ .|+...+..|++++.+|...|...  .+.++|+++||+++|++||||+++.            ++.
T Consensus       599 L~~~Q~~DGSW~G-~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~  677 (763)
T PLN02993        599 IESKQTPDGSWYG-NWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNR  677 (763)
T ss_pred             HHHhcCCCCCccc-ccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCC
Confidence            9999999999987 577766666778888888888753  2579999999999999999999853            235


Q ss_pred             CchhhchHHHHHHHHhcCCCC--CCHHHHHHHHHccCccCCCcCCC--CCCCCCCCC
Q 027177          175 SHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVVM  227 (227)
Q Consensus       175 ~~~~~T~~al~aL~~~g~~~~--~~~~~~~~wL~~~Q~~~GGf~~~--~~k~~D~cy  227 (227)
                      |+++.|++|+.+|..+|..+.  ..++|+++||+++|.++|+|.-.  .+-++-.||
T Consensus       678 St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~  734 (763)
T PLN02993        678 SNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM  734 (763)
T ss_pred             CchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence            889999999999999997543  35899999999999999998653  255666665

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.94  E-value=2e-26  Score=210.68  Aligned_cols=212  Identities=24%  Similarity=0.305  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHccc--------------CCCCcchhhcc--cchHHHHHHHHHHHHHhCCCC-------CcCHHHHHHHHH
Q 027177            6 ADKHVKYIISVEK--------------KKDSFESVVME--HLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWIL   62 (227)
Q Consensus         6 ~~~~~~yl~~~q~--------------~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~-------~~~~~~~i~~l~   62 (227)
                      .+++++||++.|.              +.|+|.+....  ..+.-.|..++.+|..++...       ...++++++||+
T Consensus       331 l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl  410 (634)
T cd02892         331 LKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLL  410 (634)
T ss_pred             HHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHH
Confidence            4689999999985              45677643211  122335667888888776542       125779999999


Q ss_pred             hccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCCCC-------CHHHHHHHHHhccC
Q 027177           63 KCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDIL-------DADKVSNYIVGLQN  114 (227)
Q Consensus        63 ~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~~-------~~~~~~~~l~~~Q~  114 (227)
                      ++|++||||..+..                     ..+++..|.+++.+|..++.....       .++++++||++.|+
T Consensus       411 ~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~  490 (634)
T cd02892         411 GMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQE  490 (634)
T ss_pred             hccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccC
Confidence            99999999985321                     146778899999999988654321       36889999999999


Q ss_pred             CCCCcccCCCCCCCccchhHHHHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCC----------CCCCchhhchH
Q 027177          115 EDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFC  182 (227)
Q Consensus       115 ~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~~~~~~T~~  182 (227)
                      +||+|.+ .++...+..|+.++.+|...|..  ....++++++||+++|++||||+..+          +.++++..|++
T Consensus       491 ~DGsW~g-~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~  569 (634)
T cd02892         491 PDGSWYG-RWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAW  569 (634)
T ss_pred             CCCCccc-cCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHH
Confidence            9999976 45544444566677788877763  34578999999999999999998642          34688899999


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCC
Q 027177          183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       183 al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      ||.+|..++..+...++++++||+++|.++|+|.-.
T Consensus       570 AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~  605 (634)
T cd02892         570 ALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQE  605 (634)
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCc
Confidence            999999998876667899999999999999999653

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.94  E-value=5.9e-26  Score=194.31  Aligned_cols=212  Identities=25%  Similarity=0.298  Sum_probs=159.7

Q ss_pred             cHHHHHHHHHHcc--------------cCCCCcchhhcc--cchHHHHHHHHHHHHHhCCCC-------CcCHHHHHHHH
Q 027177            5 AADKHVKYIISVE--------------KKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWI   61 (227)
Q Consensus         5 ~~~~~~~yl~~~q--------------~~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~-------~~~~~~~i~~l   61 (227)
                      .++++++||.+.|              .++|+|.+....  ..+.-.|-+++.+|..++...       +..++++++||
T Consensus        47 ~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L  126 (348)
T cd02889          47 ALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWL  126 (348)
T ss_pred             HHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHH
Confidence            3579999999999              688988754321  122224556777776666432       23577999999


Q ss_pred             HhccCCCCCccCCCC-------------------CCCChHHHHHHHHHHHhcccCCCC-------CHHHHHHHHHhccCC
Q 027177           62 LKCQDESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVDIL-------DADKVSNYIVGLQNE  115 (227)
Q Consensus        62 ~~~q~~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~~~-------~~~~~~~~l~~~Q~~  115 (227)
                      +++|++||+|.....                   ..+++..|.+++.+|..++.....       .++++++||.+.|++
T Consensus       127 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~  206 (348)
T cd02889         127 LSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEP  206 (348)
T ss_pred             HHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999985422                   235678899999999887754221       257899999999999


Q ss_pred             CCCcccCCCCCCCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCC----------CCCCCchhhchHHH
Q 027177          116 DGSFSGDIWGEVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCV  184 (227)
Q Consensus       116 dGg~~~~~~~~~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~~~~~~T~~al  184 (227)
                      ||+|.. .++......|.+++.+|...|. .....++++++||+++|++||||+..          +...+++..|+++|
T Consensus       207 dG~w~~-~~~~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al  285 (348)
T cd02889         207 DGSWYG-RWGVCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWAL  285 (348)
T ss_pred             CCCccc-cCCCcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHH
Confidence            999965 3333333445566677777775 23567899999999999999999863          23467889999999


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177          185 GALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       185 ~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                      .+|..++..+.+.++++++||.++|+++|||..
T Consensus       286 ~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~  318 (348)
T cd02889         286 LALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ  318 (348)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence            999999876556789999999999999999976

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.93  E-value=4e-25  Score=200.80  Aligned_cols=213  Identities=23%  Similarity=0.225  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHcccCC---------------CCcchhhccc--chHHHHHHHHHHHHHhCC-CC---CcCHHHHHHHHHhc
Q 027177            6 ADKHVKYIISVEKKK---------------DSFESVVMEH--LRLNGAYWGLTTLDILGK-LD---AVDEEDVISWILKC   64 (227)
Q Consensus         6 ~~~~~~yl~~~q~~d---------------g~~~~~~~~~--~~~~~~y~~l~~l~ll~~-~~---~~~~~~~i~~l~~~   64 (227)
                      ..++++||.+.|.++               |+|.+...++  .++-.|-.++..+.++.. ..   ...++++++||+++
T Consensus       321 i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~  400 (621)
T TIGR01787       321 LVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGM  400 (621)
T ss_pred             HHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHH
Confidence            578999999998866               5554321110  022223223333333322 11   23567999999999


Q ss_pred             cCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccC-CC--CCHHHHHHHHHhccCCCCCcc
Q 027177           65 QDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-DI--LDADKVSNYIVGLQNEDGSFS  120 (227)
Q Consensus        65 q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~~--~~~~~~~~~l~~~Q~~dGg~~  120 (227)
                      |++||||+.+..                     ..+.+..|..+|.+|..++.. +.  ..++++++||++.|++||+|.
T Consensus       401 Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~  480 (621)
T TIGR01787       401 QSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWF  480 (621)
T ss_pred             cCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCc
Confidence            999999985431                     123456899999999877531 11  237899999999999999997


Q ss_pred             cCCCCCCCccchhHHHHHHHHhhccC--cccHHHHHHHHHhccCCCCCcCCCCC----------CCCchhhchHHHHHHH
Q 027177          121 GDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTPG----------GESHSGQIFCCVGALA  188 (227)
Q Consensus       121 ~~~~~~~d~~~t~~a~~~L~~~g~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~~----------~~~~~~~T~~al~aL~  188 (227)
                      + .++...+..|..++.+|..+|...  ...++++++||+++|++||||++...          ..|++..|++||.+|.
T Consensus       481 g-~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~  559 (621)
T TIGR01787       481 G-RWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI  559 (621)
T ss_pred             c-cCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence            6 455443444556667787777642  25689999999999999999986532          3688999999999999


Q ss_pred             HhcCCCCCCHHHHHHHHHccCccCCCcCCCC
Q 027177          189 IAGALHHVDKDLLGWWLCERQVKSGGLNGRP  219 (227)
Q Consensus       189 ~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~  219 (227)
                      .++..+...++++++||+++|+++|||...+
T Consensus       560 ~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~  590 (621)
T TIGR01787       560 AAGEADSEAIERGVKYLLETQRPDGDWPQEY  590 (621)
T ss_pred             HcCccchHHHHHHHHHHHHhCCCCCCCCCcc
Confidence            9987655579999999999999999996543

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.93  E-value=1.7e-24  Score=185.31  Aligned_cols=208  Identities=18%  Similarity=0.216  Sum_probs=160.8

Q ss_pred             HHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhcc--------------CCCCC
Q 027177            7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQ--------------DESGG   70 (227)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q--------------~~dGg   70 (227)
                      +++++||.+.|++||+|....   ++++.|.+++.+|...+..  ....++++++||++.|              .++||
T Consensus         2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg   78 (348)
T cd02889           2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG   78 (348)
T ss_pred             chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence            688999999999999998553   6788898899998888763  2346889999999999              68999


Q ss_pred             ccCCCC--CCCChHHHHHHHHHHHhcccCC----CC---CHHHHHHHHHhccCCCCCcccCCC-----------------
Q 027177           71 FAGNIG--HDPHVLYTLSAVQVLALFDKVD----IL---DADKVSNYIVGLQNEDGSFSGDIW-----------------  124 (227)
Q Consensus        71 f~~~~~--~~~~~~~T~~al~~L~~l~~~~----~~---~~~~~~~~l~~~Q~~dGg~~~~~~-----------------  124 (227)
                      |.....  ..+++..|..++.+|..+....    .+   .+.++++||.+.|++||+|.....                 
T Consensus        79 w~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~  158 (348)
T cd02889          79 WAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDI  158 (348)
T ss_pred             CcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCC
Confidence            876432  2355667888888887765432    11   268899999999999999984311                 


Q ss_pred             --CCCCccchhHHHHHHHHhhccCc-------ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCC-
Q 027177          125 --GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH-  194 (227)
Q Consensus       125 --~~~d~~~t~~a~~~L~~~g~~~~-------~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~-  194 (227)
                        ..+++..|..++.+|..++....       +.++++++||+++|++||||....+ .++.+.|++++.+|..+|... 
T Consensus       159 ~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~  237 (348)
T cd02889         159 MIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDEN  237 (348)
T ss_pred             ccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcC
Confidence              12345567777888887776322       4578999999999999999975433 356778999999999988642 


Q ss_pred             CCCHHHHHHHHHccCccCCCcCCC
Q 027177          195 HVDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       195 ~~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      ...++++++||+++|.++|||...
T Consensus       238 ~~~~~~~~~~L~~~Q~~dG~w~~~  261 (348)
T cd02889         238 SPYVRKACDWLLSKQNPDGGWGES  261 (348)
T ss_pred             cHHHHHHHHHHHHccCCCCCcCCc
Confidence            345789999999999999999864

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.89  E-value=4.7e-22  Score=153.25  Aligned_cols=205  Identities=15%  Similarity=0.207  Sum_probs=157.5

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHh-ccCCCCCccCC-------
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK-CQDESGGFAGN-------   74 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~-~q~~dGgf~~~-------   74 (227)
                      ..++++.++||..+|+.||+|+.+..-+..+.-||||+.++.+|+..++ .++++++||.+ .|...+|++..       
T Consensus         5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~evP-r~EktiefL~d~~qt~~~~~a~~~~~l~~l   83 (274)
T COG1689           5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEVP-RKEKTIEFLYDQMQTAGVGVAMAIEFLRIL   83 (274)
T ss_pred             hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcCc-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            5788999999999999999999998767778999999999999998754 89999999988 45555555310       


Q ss_pred             ---------------------------C------CCCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCccc
Q 027177           75 ---------------------------I------GHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG  121 (227)
Q Consensus        75 ---------------------------~------~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~  121 (227)
                                                 .      +...-+..||....+|.+.+..   -.+...+|+.+-|+.+|++.+
T Consensus        84 g~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~  160 (274)
T COG1689          84 GAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDA  160 (274)
T ss_pred             cccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccc
Confidence                                       0      1122367888888888887631   135677888888888877665


Q ss_pred             CCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCC-CCchhhchHHHHHHHHhcCCCCCCHHH
Q 027177          122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDL  200 (227)
Q Consensus       122 ~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~-~~~~~~T~~al~aL~~~g~~~~~~~~~  200 (227)
                      ---..+.+..||.|+.+|...+     .++....|=.+|-. +|||..+|++ +|+...|++|+.+|.+++..  -.+.+
T Consensus       161 YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe~~c~~-~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~  232 (274)
T COG1689         161 YGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFELCCGD-WGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISD  232 (274)
T ss_pred             cccCCcchHHHHHHHHhhcccc-----chHHHHhHHhcccc-CCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchH
Confidence            4334455667776666554433     25666677666765 8999999975 78999999999999999975  34789


Q ss_pred             HHHHHHccCccCCCcCCCC
Q 027177          201 LGWWLCERQVKSGGLNGRP  219 (227)
Q Consensus       201 ~~~wL~~~Q~~~GGf~~~~  219 (227)
                      .++|+.+.||++|||+...
T Consensus       233 ~~rFI~slqN~nGGFRRS~  251 (274)
T COG1689         233 HIRFIRSLQNQNGGFRRSY  251 (274)
T ss_pred             HHHHHHHhhcCCCCeeeeE
Confidence            9999999999999998643

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.88  E-value=6.6e-23  Score=147.85  Aligned_cols=109  Identities=34%  Similarity=0.618  Sum_probs=90.9

Q ss_pred             HHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCCHHHH--HHHHHhccCCCCCcccCCC-CCCCccchhH
Q 027177           58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV--SNYIVGLQNEDGSFSGDIW-GEVDTRFSYI  134 (227)
Q Consensus        58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~--~~~l~~~Q~~dGg~~~~~~-~~~d~~~t~~  134 (227)
                      |+||+++|++||||+.. +.++++..|+.++.+|..++...  +++++  ++||+++|++||||...+. ..+|+..|++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~   77 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV   77 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence            68999999999999988 77899999999999999987644  47778  9999999999999999874 5678999999


Q ss_pred             HHHHHHHhhccCc-ccHHHHHHHHHhccCCCCCcCC
Q 027177          135 AICCLSILQRLDK-INVDKAVEYIVSCKNLDGGFGC  169 (227)
Q Consensus       135 a~~~L~~~g~~~~-~~~~~~~~~l~~~Q~~dGGf~~  169 (227)
                      ++.+|.+++.... +.++++++||+++|++||||++
T Consensus        78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y  113 (113)
T PF13249_consen   78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY  113 (113)
T ss_dssp             HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence            9999999987543 6789999999999999999985

...

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.88  E-value=2.3e-21  Score=176.40  Aligned_cols=212  Identities=19%  Similarity=0.085  Sum_probs=153.2

Q ss_pred             cHHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccC-------------CCC
Q 027177            5 AADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQD-------------ESG   69 (227)
Q Consensus         5 ~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~-------------~dG   69 (227)
                      .+.+|+++|.+-.. .+|++...+ ..+.+|.|.+++.+|...+.. +...++|+.+||+++|.             +.|
T Consensus       288 ~~~~~l~~l~~~~~~~~~g~~~~~-~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~G  366 (635)
T TIGR01507       288 FIKLGWEGIDLYGVELDDSWMFQA-CVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPG  366 (635)
T ss_pred             HHHHHHHHHHHheEecCCceEecC-CCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCC
Confidence            35679999977543 455543322 245789998898888877743 23467899999999873             358


Q ss_pred             CccCC--CCCCCChHHHHHHHHHHHhcccCC----CCCHHHHHHHHHhccCCCCCcccCCC------------C------
Q 027177           70 GFAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIW------------G------  125 (227)
Q Consensus        70 gf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGg~~~~~~------------~------  125 (227)
                      ||+..  +...|++..|..+|.+|..++...    ...++++++||.++|++||||.....            +      
T Consensus       367 GW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~  446 (635)
T TIGR01507       367 GWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVT  446 (635)
T ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCcccccccc
Confidence            88775  334689999999999998874211    12378999999999999999975211            0      


Q ss_pred             -CCCccchhHHHHHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC-CCCCHHHHH
Q 027177          126 -EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLG  202 (227)
Q Consensus       126 -~~d~~~t~~a~~~L~~~g~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-~~~~~~~~~  202 (227)
                       .+++..|-.++.+|...+.. ....++++++||++.|++||||....+ ..+.+.|+.++.+|...|.. ....+++++
T Consensus       447 D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv  525 (635)
T TIGR01507       447 DPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKAL  525 (635)
T ss_pred             CCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHH
Confidence             11222244444555555432 245789999999999999999955555 46788899999999988753 235689999


Q ss_pred             HHHHccCccCCCcCCC
Q 027177          203 WWLCERQVKSGGLNGR  218 (227)
Q Consensus       203 ~wL~~~Q~~~GGf~~~  218 (227)
                      +||+++|++||||+..
T Consensus       526 ~wL~~~Q~~DGGWge~  541 (635)
T TIGR01507       526 AWLESHQNPDGGWGED  541 (635)
T ss_pred             HHHHHhcCCCCCCCCC
Confidence            9999999999999844

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.88  E-value=1.3e-21  Score=178.24  Aligned_cols=212  Identities=17%  Similarity=0.156  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHccc--CCCCcchhhcccchHHHHHHHHHHHHHhCCCC-C--cCHHHHHHHHHhccC--------------
Q 027177            6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-A--VDEEDVISWILKCQD--------------   66 (227)
Q Consensus         6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~-~--~~~~~~i~~l~~~q~--------------   66 (227)
                      ..+|+++|.+..-  ++|+..... -.+..|.|-+++.+|...+..+ +  ..++++++||+++|.              
T Consensus       278 ~~k~l~~l~~~~~~~~~~g~~~q~-~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~  356 (634)
T TIGR03463       278 VAAHLEGLEDYRYEDDDRGLRYNG-YNSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP  356 (634)
T ss_pred             HHHHHHHHHhhEEEcCCCCEEEee-CCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence            5689999998753  453321111 2234488877777776555321 1  346799999999994              


Q ss_pred             CCCCccCCC--CCCCChHHHHHHHHHHHhcccC-----CCC---CHHHHHHHHHhccCCCCCcccCCC------------
Q 027177           67 ESGGFAGNI--GHDPHVLYTLSAVQVLALFDKV-----DIL---DADKVSNYIVGLQNEDGSFSGDIW------------  124 (227)
Q Consensus        67 ~dGgf~~~~--~~~~~~~~T~~al~~L~~l~~~-----~~~---~~~~~~~~l~~~Q~~dGg~~~~~~------------  124 (227)
                      +.|||+...  ...++...|..+|.+|..+...     +.+   .+.++++||+++|++||||+....            
T Consensus       357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~  436 (634)
T TIGR03463       357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP  436 (634)
T ss_pred             CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence            468888763  3457788998888888765421     111   257899999999999999994311            


Q ss_pred             ------CCCCccchhH---HHHHHHHhhccC--------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHH
Q 027177          125 ------GEVDTRFSYI---AICCLSILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL  187 (227)
Q Consensus       125 ------~~~d~~~t~~---a~~~L~~~g~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL  187 (227)
                            -..|..+..+   ++.+|..++...        ...++++++||++.|++||||....+ ....+.|++++.+|
T Consensus       437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL  515 (634)
T TIGR03463       437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL  515 (634)
T ss_pred             HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence                  0113334444   445555554422        12578999999999999999977655 35677899999999


Q ss_pred             HHhcCC-CCCCHHHHHHHHHccCccCCCcCCCC
Q 027177          188 AIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRP  219 (227)
Q Consensus       188 ~~~g~~-~~~~~~~~~~wL~~~Q~~~GGf~~~~  219 (227)
                      ..+|.. +...++++++||+++|++||||+.+.
T Consensus       516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~  548 (634)
T TIGR03463       516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVY  548 (634)
T ss_pred             HHcCCCcCcHHHHHHHHHHHHccCCCCCccCcc
Confidence            998864 44568999999999999999998754

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.88  E-value=4.3e-21  Score=175.71  Aligned_cols=211  Identities=17%  Similarity=0.164  Sum_probs=156.1

Q ss_pred             HHHHHHHHHHcc--cCCCCcchhhcccchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhccC--------------C
Q 027177            6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD--------------E   67 (227)
Q Consensus         6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q~--------------~   67 (227)
                      ..+|+++|.+..  .+||...... ..+.+|.|-+++.+|.-.+..  ....++++++||++.|.              +
T Consensus       280 ~~~~l~~l~~~~~~~~~g~~~~~~-~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~  358 (634)
T cd02892         280 FKRHLERIDDFLWLGPEGMKMCQT-NGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR  358 (634)
T ss_pred             HHHHHHHHHhcEEEecCCcEEEcC-CCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC
Confidence            568888888854  5677753222 355689998888888766643  22367899999999995              3


Q ss_pred             CCCccCC--CCCCCChHHHHHHHHHHHhcccCC----CC---CHHHHHHHHHhccCCCCCcccC-CCC------------
Q 027177           68 SGGFAGN--IGHDPHVLYTLSAVQVLALFDKVD----IL---DADKVSNYIVGLQNEDGSFSGD-IWG------------  125 (227)
Q Consensus        68 dGgf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~---~~~~~~~~l~~~Q~~dGg~~~~-~~~------------  125 (227)
                      .|||+..  +...+++..|..++.+|..+....    .+   .++++++||.++|++||||... +..            
T Consensus       359 ~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e  438 (634)
T cd02892         359 KGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFE  438 (634)
T ss_pred             CCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchh
Confidence            5777653  233567888999999988776432    12   2578999999999999999842 110            


Q ss_pred             --------CCCccchhHHHHHHHHhhccCc-------ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHh
Q 027177          126 --------EVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (227)
Q Consensus       126 --------~~d~~~t~~a~~~L~~~g~~~~-------~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~  190 (227)
                              .+.+..|..++.+|..++....       ..++++++||+++|++||||..+.+ ..+.+.|++++.+|..+
T Consensus       439 ~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~  517 (634)
T cd02892         439 DFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAA  517 (634)
T ss_pred             hhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHh
Confidence                    1234457777888887776332       3588999999999999999976654 46778899999999999


Q ss_pred             cCC--CCCCHHHHHHHHHccCccCCCcCCC
Q 027177          191 GAL--HHVDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       191 g~~--~~~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      |..  ....++++++||+++|++||||+..
T Consensus       518 G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~  547 (634)
T cd02892         518 GEDYENSPYIRKACDFLLSKQNPDGGWGES  547 (634)
T ss_pred             CCcccCcHHHHHHHHHHHhcCCCCCCCCCc
Confidence            864  2346899999999999999999854

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.88  E-value=2.4e-21  Score=162.44  Aligned_cols=195  Identities=14%  Similarity=0.090  Sum_probs=147.1

Q ss_pred             HHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccCCC---------
Q 027177            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNI---------   75 (227)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~---------   75 (227)
                      ++++.+.+.|++||+|+.|...+.++|.|.+++.+|.......   +..++++++||++.|++||+|....         
T Consensus        56 ~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~g  135 (297)
T cd02896          56 QGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTG  135 (297)
T ss_pred             HHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccC
Confidence            3444445569999999999877889999999999999887532   2357799999999999999998642         


Q ss_pred             C---CCCChHHHHHHHHHHHhcccCCC-------CCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhcc
Q 027177           76 G---HDPHVLYTLSAVQVLALFDKVDI-------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL  145 (227)
Q Consensus        76 ~---~~~~~~~T~~al~~L~~l~~~~~-------~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~  145 (227)
                      +   .++++..|.+++.+|...+....       ..++++++||.+.|.+          ..++..+..++.+|.+.|..
T Consensus       136 g~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~~  205 (297)
T cd02896         136 GVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALADSP  205 (297)
T ss_pred             CccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCCh
Confidence            1   13678889999999988754321       1368899999998643          12222233344566666653


Q ss_pred             CcccHHHHHHHHHhccCCCCCcCCCC-----------CCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCC
Q 027177          146 DKINVDKAVEYIVSCKNLDGGFGCTP-----------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG  214 (227)
Q Consensus       146 ~~~~~~~~~~~l~~~Q~~dGGf~~~~-----------~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GG  214 (227)
                         ..+++.++|++.|+.||||++..           ....+++.|+|||.++...+..  ....++++||.++|+.+||
T Consensus       206 ---~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~~--~~a~~iv~WL~~qr~~~Gg  280 (297)
T cd02896         206 ---LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGDI--EYANPIARWLTEQRNYGGG  280 (297)
T ss_pred             ---hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCCc--hhHHHHHHHHHhcCCCCCC
Confidence               56889999999999999998531           1123789999999999988744  3588899999999999999


Q ss_pred             cCC
Q 027177          215 LNG  217 (227)
Q Consensus       215 f~~  217 (227)
                      |..
T Consensus       281 f~s  283 (297)
T cd02896         281 FGS  283 (297)
T ss_pred             eeh
Confidence            974

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.87  E-value=2.8e-22  Score=144.52  Aligned_cols=108  Identities=29%  Similarity=0.450  Sum_probs=91.1

Q ss_pred             HHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHH--HHHHHhccCCCCCcCCCC-CCCCchhhchH
Q 027177          106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA--VEYIVSCKNLDGGFGCTP-GGESHSGQIFC  182 (227)
Q Consensus       106 ~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~--~~~l~~~Q~~dGGf~~~~-~~~~~~~~T~~  182 (227)
                      |+||+++|++||||... ...+++..|+.++.+|..++...  +.+++  ++||+++|++||||...+ +.+++...|++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~   77 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV   77 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence            68999999999999986 67888999999999999998744  47778  999999999999999998 45788999999


Q ss_pred             HHHHHHHhcCCCC-CCHHHHHHHHHccCccCCCcC
Q 027177          183 CVGALAIAGALHH-VDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       183 al~aL~~~g~~~~-~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                      ++++|..++..+. ..++++++||+++|+++|||+
T Consensus        78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~  112 (113)
T PF13249_consen   78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG  112 (113)
T ss_dssp             HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999997654 678999999999999999997

...

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.86  E-value=3.9e-20  Score=154.89  Aligned_cols=199  Identities=13%  Similarity=0.102  Sum_probs=143.9

Q ss_pred             HHHHHHHHHH-------cccCCCCcchhhcc--cchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccC
Q 027177            6 ADKHVKYIIS-------VEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG   73 (227)
Q Consensus         6 ~~~~~~yl~~-------~q~~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~   73 (227)
                      ++++++||+.       .|++||+|+.+...  +++.|.|.+++.+|.......   +..++++++||++.|++||||..
T Consensus        44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~  123 (292)
T cd02897          44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE  123 (292)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence            4567777775       69999999988654  778999999999999887532   23688999999999999999985


Q ss_pred             CC---------CCCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhh
Q 027177           74 NI---------GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (227)
Q Consensus        74 ~~---------~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g  143 (227)
                      ..         +..+.+..|.+++.+|...+... ...++++++||.+.+.+          ..++..+..++.+|.+.|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~  193 (292)
T cd02897         124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAG  193 (292)
T ss_pred             CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcC
Confidence            32         12355778999999998876532 22368999999997643          223334445566777777


Q ss_pred             ccCcccHHHHHHHHH---hccCCCCCcCCCC-----------CCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccC
Q 027177          144 RLDKINVDKAVEYIV---SCKNLDGGFGCTP-----------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ  209 (227)
Q Consensus       144 ~~~~~~~~~~~~~l~---~~Q~~dGGf~~~~-----------~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q  209 (227)
                      ..   ..+++++++.   ..++.+|+|+..+           ...++++.|.|+|.+|...+..+...+.++++||.++|
T Consensus       194 ~~---~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q  270 (292)
T cd02897         194 SE---KRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQR  270 (292)
T ss_pred             Cc---cHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcC
Confidence            32   2345555544   3455678887431           12468889999999998887423345778899999999


Q ss_pred             ccCCCcCC
Q 027177          210 VKSGGLNG  217 (227)
Q Consensus       210 ~~~GGf~~  217 (227)
                      +.+|||..
T Consensus       271 ~~~Ggf~s  278 (292)
T cd02897         271 NSLGGFSS  278 (292)
T ss_pred             CCCCCccc
Confidence            99999975

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.85  E-value=3.5e-20  Score=168.66  Aligned_cols=211  Identities=19%  Similarity=0.166  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHc--ccCCCCcchhhcccchHHHHHHHHHHHHHhCC---C-CCcCHHHHHHHHHhccCCC-----------
Q 027177            6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGK---L-DAVDEEDVISWILKCQDES-----------   68 (227)
Q Consensus         6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~---~-~~~~~~~~i~~l~~~q~~d-----------   68 (227)
                      ..+|++.|++.  ..+||.+.-  ...+.+|.|-+++.+|...+.   . ....++++++||+++|..+           
T Consensus       269 ~~~~l~~l~~~~~~~~dg~~~q--~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~  346 (621)
T TIGR01787       269 FQKHLQRIDDYLWLQLDGMKMQ--GTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRH  346 (621)
T ss_pred             HHHHHHHHhhcEEEeCCccEEe--cCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCC
Confidence            56888888876  557776531  125678999888888876663   2 2236889999999999866           


Q ss_pred             ----CCccCC--CCCCCChHHHHHHHHHHHhccc-CCCC---CHHHHHHHHHhccCCCCCcccCCC-C---------C--
Q 027177           69 ----GGFAGN--IGHDPHVLYTLSAVQVLALFDK-VDIL---DADKVSNYIVGLQNEDGSFSGDIW-G---------E--  126 (227)
Q Consensus        69 ----Ggf~~~--~~~~~~~~~T~~al~~L~~l~~-~~~~---~~~~~~~~l~~~Q~~dGg~~~~~~-~---------~--  126 (227)
                          |||+..  ....|++..|..++.++.++.. .+..   .++++++||.+.|++||||+.... .         .  
T Consensus       347 ~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e  426 (621)
T TIGR01787       347 NLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSE  426 (621)
T ss_pred             CCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchh
Confidence                666543  2334677777776655544432 1122   257899999999999999984211 0         0  


Q ss_pred             ------CC---ccchhHHHHHHHHhhcc---CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCC
Q 027177          127 ------VD---TRFSYIAICCLSILQRL---DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH  194 (227)
Q Consensus       127 ------~d---~~~t~~a~~~L~~~g~~---~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~  194 (227)
                            .|   +..|..++.+|..++..   ....++++++||+++|++||+|..+.+. .+.+.|.+++.+|..+|...
T Consensus       427 ~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~  505 (621)
T TIGR01787       427 VFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTY  505 (621)
T ss_pred             hhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcc
Confidence                  12   23455666667666531   1346899999999999999999876653 55677999999999998652


Q ss_pred             --CCCHHHHHHHHHccCccCCCcCCCC
Q 027177          195 --HVDKDLLGWWLCERQVKSGGLNGRP  219 (227)
Q Consensus       195 --~~~~~~~~~wL~~~Q~~~GGf~~~~  219 (227)
                        ...++++++||+++|++||||+..+
T Consensus       506 ~~~~~i~rA~~~L~~~Q~~DGGWge~~  532 (621)
T TIGR01787       506 RNCPEVQKACDWLLSRQMPDGGWGEDC  532 (621)
T ss_pred             cCCHHHHHHHHHHHhhcCCCCCCCcCC
Confidence              2458999999999999999998654

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>PLN03012 Camelliol C synthase

Probab=99.85  E-value=2.4e-20  Score=170.18  Aligned_cols=184  Identities=17%  Similarity=0.136  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHcccCCCCcchhhc---------------------ccchHHHHHHHHHHHHHhCCCC--------CcCHHH
Q 027177            6 ADKHVKYIISVEKKKDSFESVVM---------------------EHLRLNGAYWGLTTLDILGKLD--------AVDEED   56 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~---------------------~~~~~~~~y~~l~~l~ll~~~~--------~~~~~~   56 (227)
                      ..++++||.+.||+||||..+..                     +++..-.|--+|.+|.+++...        ...+++
T Consensus       515 l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~r  594 (759)
T PLN03012        515 LHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKK  594 (759)
T ss_pred             HHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHH
Confidence            45899999999999999865432                     2333334556788888876531        124779


Q ss_pred             HHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCC--CCHHHHHHHHHhccCCCCCcccCCC----------
Q 027177           57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI--LDADKVSNYIVGLQNEDGSFSGDIW----------  124 (227)
Q Consensus        57 ~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~--~~~~~~~~~l~~~Q~~dGg~~~~~~----------  124 (227)
                      +++||++.|++||||++..+. ..++.|.+||.+|..++....  ..++|+++||++.|++||||+++-.          
T Consensus       595 Av~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~  673 (759)
T PLN03012        595 AAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQ  673 (759)
T ss_pred             HHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCC
Confidence            999999999999999988773 566799999999998875322  3479999999999999999997521          


Q ss_pred             --CCCCccchhHHHHHHHHhhccCc--ccHHHHHHHHHhccCCCCCcCCCC--CC-------CCchhhchHHHHHHHHh
Q 027177          125 --GEVDTRFSYIAICCLSILQRLDK--INVDKAVEYIVSCKNLDGGFGCTP--GG-------ESHSGQIFCCVGALAIA  190 (227)
Q Consensus       125 --~~~d~~~t~~a~~~L~~~g~~~~--~~~~~~~~~l~~~Q~~dGGf~~~~--~~-------~~~~~~T~~al~aL~~~  190 (227)
                        +.+.+..|.||+.+|...|....  ..++|+++||++.|.+||+|....  |.       .-+.+.-++.|.||...
T Consensus       674 ~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y  752 (759)
T PLN03012        674 EGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEY  752 (759)
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccchHHHHHHHHHH
Confidence              24677889999999998887432  468999999999999999997642  11       12333444566666543

>PLN02993 lupeol synthase

Probab=99.85  E-value=2.5e-20  Score=170.36  Aligned_cols=189  Identities=18%  Similarity=0.132  Sum_probs=139.7

Q ss_pred             cchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhccCC-----C----------CCccCC--CCCCCChHHHHHHHHH
Q 027177           30 HLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDE-----S----------GGFAGN--IGHDPHVLYTLSAVQV   90 (227)
Q Consensus        30 ~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q~~-----d----------Ggf~~~--~~~~~~~~~T~~al~~   90 (227)
                      .+.+|-|.+++.+|...+..  .....+|+.+||++.|..     |          |||+..  ....++...|..+|.+
T Consensus       415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka  494 (763)
T PLN02993        415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC  494 (763)
T ss_pred             CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence            56789998888888777643  234688999999998862     2          777764  3456788899988875


Q ss_pred             HHhcccC------CCC---CHHHHHHHHHhccCCCCCcccCCC------------------CCCCccchhHHHHH---HH
Q 027177           91 LALFDKV------DIL---DADKVSNYIVGLQNEDGSFSGDIW------------------GEVDTRFSYIAICC---LS  140 (227)
Q Consensus        91 L~~l~~~------~~~---~~~~~~~~l~~~Q~~dGg~~~~~~------------------~~~d~~~t~~a~~~---L~  140 (227)
                      +.++...      +.+   ...++++||++.|++||||+....                  -..|..++.|+..+   |.
T Consensus       495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~  574 (763)
T PLN02993        495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV  574 (763)
T ss_pred             HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence            4444321      112   257899999999999999985310                  11245666665554   44


Q ss_pred             Hhhcc-C-------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC--CCHHHHHHHHHccCc
Q 027177          141 ILQRL-D-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQV  210 (227)
Q Consensus       141 ~~g~~-~-------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~--~~~~~~~~wL~~~Q~  210 (227)
                      +++.. +       ...++++++||++.|++||||..+.+ ..+.+.|+++|.+|..+|....  +.++++++||+++|+
T Consensus       575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~  653 (763)
T PLN02993        575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR  653 (763)
T ss_pred             HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence            44431 1       24678999999999999999987766 4778899999999999987532  469999999999999


Q ss_pred             cCCCcCCCC
Q 027177          211 KSGGLNGRP  219 (227)
Q Consensus       211 ~~GGf~~~~  219 (227)
                      +||||+...
T Consensus       654 ~DGGWGEs~  662 (763)
T PLN02993        654 DDGGWGESY  662 (763)
T ss_pred             CCCCcCcCc
Confidence            999998753

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.72  E-value=8.6e-17  Score=142.43  Aligned_cols=158  Identities=29%  Similarity=0.380  Sum_probs=128.0

Q ss_pred             HHHHHHHhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCC------CC--CHHHHH
Q 027177           56 DVISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DADKVS  106 (227)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~~~~  106 (227)
                      ++++.|+..|..+|||.....                     .++.+.+|.+++++|....+.-      ++  .+++++
T Consensus       516 dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av  595 (760)
T KOG0497|consen  516 DAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAV  595 (760)
T ss_pred             HHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHH
Confidence            688889999999999986431                     2467889999999999887531      12  257899


Q ss_pred             HHHHhccCCCCCcccCCCCCCCccchhHH---HHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCCC---------
Q 027177          107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIA---ICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPG---------  172 (227)
Q Consensus       107 ~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a---~~~L~~~g~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~---------  172 (227)
                      +||++.|.+||+|.+ .|+   +++||.+   +.+|...|+.  ....++++++||++.|++||||++++.         
T Consensus       596 ~~ie~~Q~~DGSWyG-sWg---vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~  671 (760)
T KOG0497|consen  596 EFIEKLQLPDGSWYG-SWG---VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIP  671 (760)
T ss_pred             HHHHHcCCCCCcccc-hhh---HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccc
Confidence            999999999999998 455   3676654   4566777763  345789999999999999999999732         


Q ss_pred             ---CCCchhhchHHHHHHHHhcCCC--CCCHHHHHHHHHccCccCCCcCC
Q 027177          173 ---GESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       173 ---~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                         ..++...|++|+++|..+|+.+  +.++.|+++.|.+.|..+|-|.-
T Consensus       672 ~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpq  721 (760)
T KOG0497|consen  672 LEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQ  721 (760)
T ss_pred             cccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcch
Confidence               3578889999999999999874  34799999999999999998854

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=99.66  E-value=1.3e-15  Score=124.56  Aligned_cols=193  Identities=13%  Similarity=0.108  Sum_probs=132.4

Q ss_pred             HHHHHcccCCCCcchh-hcccchHHHHHHHHHHHHHhCCCCC---cCHHHHHHHHHhccCCCCCccCCCC---------C
Q 027177           11 KYIISVEKKKDSFESV-VMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQDESGGFAGNIG---------H   77 (227)
Q Consensus        11 ~yl~~~q~~dg~~~~~-~~~~~~~~~~y~~l~~l~ll~~~~~---~~~~~~i~~l~~~q~~dGgf~~~~~---------~   77 (227)
                      .=+.+-+++||||..+ .+.++++|.|.|++..+........   ..++++++||.+.|++||.|.....         .
T Consensus         4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~   83 (246)
T PF07678_consen    4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV   83 (246)
T ss_dssp             HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG
T ss_pred             HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC
Confidence            4456678999999999 6678999999999999999987532   3578999999999999999975322         1


Q ss_pred             CCChHHHHHHHHHHHhcccCC-------CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccH
Q 027177           78 DPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINV  150 (227)
Q Consensus        78 ~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~  150 (227)
                      ...+..|.+++.+|...+...       ...++++++||++..          ....|......+..+|.+.++  .+..
T Consensus        84 ~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~----------~~~~~~Y~lAl~aYAL~la~~--~~~~  151 (246)
T PF07678_consen   84 EDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHL----------DNIQDPYTLALVAYALALAGD--SPQA  151 (246)
T ss_dssp             THHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHH----------GCTSSHHHHHHHHHHHHHTTT--CHHH
T ss_pred             CCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhc----------cccCCHHHHHHHHHHHHhhcc--cchH
Confidence            235778888888888776321       122688999998761          011222222223345666663  4456


Q ss_pred             HHHHHHHHhccCCCCCcCCCCCC--------------CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177          151 DKAVEYIVSCKNLDGGFGCTPGG--------------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       151 ~~~~~~l~~~Q~~dGGf~~~~~~--------------~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                      +++.+-|.+....+|+..+.+..              ..+++.|.|||.++...+.  .....++++||.++|+..|||+
T Consensus       152 ~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~--~~~~~~iv~WL~~qr~~~Ggf~  229 (246)
T PF07678_consen  152 SKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGD--LEEASPIVRWLISQRNSGGGFG  229 (246)
T ss_dssp             HHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHCTTTTSSTS
T ss_pred             HHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhcCCCCccC
Confidence            77788888766555543222111              1357899999999888843  2347889999999999999997


Q ss_pred             C
Q 027177          217 G  217 (227)
Q Consensus       217 ~  217 (227)
                      -
T Consensus       230 S  230 (246)
T PF07678_consen  230 S  230 (246)
T ss_dssp             S
T ss_pred             c
Confidence            4

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.64  E-value=8.6e-15  Score=113.31  Aligned_cols=152  Identities=18%  Similarity=0.199  Sum_probs=118.2

Q ss_pred             ccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCCHHHHHHH
Q 027177           29 EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNY  108 (227)
Q Consensus        29 ~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~  108 (227)
                      +++.+..|||+-.+|.+.+..   -.+.+-+|+++.|+.+|++.+.--..++...|+.|+-+|.....     ++...+|
T Consensus       119 t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~-----~~~v~~F  190 (274)
T COG1689         119 TATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP-----KEEVRHF  190 (274)
T ss_pred             CCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccc-----hHHHHhH
Confidence            566788999999999999854   45566678888888887776665567788888877777665432     3444444


Q ss_pred             HHhccCCCCCcccCCCC-CCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC-CCCCchhhchHHHHH
Q 027177          109 IVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTP-GGESHSGQIFCCVGA  186 (227)
Q Consensus       109 l~~~Q~~dGg~~~~~~~-~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~-~~~~~~~~T~~al~a  186 (227)
                      =.. .-.+|||...|.+ ++-+..||+|+.+|.+++..  ..+...++||.+.||+||||+.+- .+.|.+..||.||..
T Consensus       191 e~~-c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~  267 (274)
T COG1689         191 ELC-CGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALAS  267 (274)
T ss_pred             Hhc-cccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHH
Confidence            444 4567999988877 45578899999999999874  457889999999999999998764 568999999999999


Q ss_pred             HHHhc
Q 027177          187 LAIAG  191 (227)
Q Consensus       187 L~~~g  191 (227)
                      |..+-
T Consensus       268 L~~l~  272 (274)
T COG1689         268 LASLH  272 (274)
T ss_pred             HHHHh
Confidence            98763

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.60  E-value=8.3e-14  Score=115.82  Aligned_cols=198  Identities=17%  Similarity=0.153  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHcccCCCCcchhhcc-cchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccCCCC-----
Q 027177            6 ADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIG-----   76 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~-----   76 (227)
                      +++++++|.+.|++||||+.+++. .++.|.|.|++.+|..++...   +..++++++||.+.|++||+|.....     
T Consensus        51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~  130 (282)
T cd02891          51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE  130 (282)
T ss_pred             HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence            457889999999999999999877 789999999999998776532   23488999999999999999976533     


Q ss_pred             ----CCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHH
Q 027177           77 ----HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK  152 (227)
Q Consensus        77 ----~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~  152 (227)
                          ..+....|.+++.+|...+......+.++++||.+....          ..++.....+..+|.+.|.  ....++
T Consensus       131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~~  198 (282)
T cd02891         131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRADE  198 (282)
T ss_pred             hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHHH
Confidence                234556788898888877654333468899999987532          1122223334466777775  223445


Q ss_pred             HHHHHHhccCCCCC-------cCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177          153 AVEYIVSCKNLDGG-------FGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       153 ~~~~l~~~Q~~dGG-------f~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                      +++-|...-...++       |....+.......|.+++.+....+  +.....+++.||.+++...|+|..
T Consensus       199 ~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~--~~~~~~~~~~~L~~~~~~~~~~~s  268 (282)
T cd02891         199 ALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLG--DLEEAGPIAKWLAQQRNSGGGFLS  268 (282)
T ss_pred             HHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCCCccc
Confidence            55555543322332       2212233344566667766665433  233478899999997777888854

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.60  E-value=4.3e-16  Score=111.54  Aligned_cols=104  Identities=24%  Similarity=0.417  Sum_probs=42.7

Q ss_pred             HHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhch
Q 027177          103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIF  181 (227)
Q Consensus       103 ~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~  181 (227)
                      +++++||.+.|++||+|... +. .++..|++++.+|..++. ...+.++++++||+++|++||||++.+  ..+...|.
T Consensus         2 ~~~~~~l~~~Q~~dG~W~~~-~~-~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~--~~~~~~t~   77 (109)
T PF13243_consen    2 KRAAEWLLSQQNPDGSWGYN-WG-SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSG--GEYVSMTA   77 (109)
T ss_dssp             -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred             cccccccccccccccccccc-cc-ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcC--CCCHHHHH
Confidence            57899999999999999864 32 567778888888887775 345678999999999999999999874  34466777


Q ss_pred             HHHHHHHHhcCC-CCCCHHHHHHHHHccCc
Q 027177          182 CCVGALAIAGAL-HHVDKDLLGWWLCERQV  210 (227)
Q Consensus       182 ~al~aL~~~g~~-~~~~~~~~~~wL~~~Q~  210 (227)
                      .++.+|.+.+.. +...++++++||+++|.
T Consensus        78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   78 AAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            788888777653 33458999999999975

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.57  E-value=8.2e-14  Score=116.92  Aligned_cols=152  Identities=18%  Similarity=0.125  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCC------
Q 027177           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW------  124 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~------  124 (227)
                      +++.++.++++|++||||+.+.+..++...|.+++.+|........++   ++++++||.+.|++||+|.....      
T Consensus        54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m  133 (297)
T cd02896          54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM  133 (297)
T ss_pred             HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence            567888889999999999988777888999999999998886543343   57899999999999999996421      


Q ss_pred             --C----CCCccchhHHHHHHHHhhccC-------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhc
Q 027177          125 --G----EVDTRFSYIAICCLSILQRLD-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (227)
Q Consensus       125 --~----~~d~~~t~~a~~~L~~~g~~~-------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g  191 (227)
                        +    ++++..|.+++.+|...+...       ...++++++||.+++.+          ..+++.++.+.-+|.+++
T Consensus       134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~  203 (297)
T cd02896         134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD  203 (297)
T ss_pred             cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence              1    245666777887887766532       23678999999998763          234555666666676766


Q ss_pred             CCCCCCHHHHHHHHHccCccCCCcCCC
Q 027177          192 ALHHVDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       192 ~~~~~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      .   +...++.+||.++|+.+||+..+
T Consensus       204 ~---~~~~~a~~~L~~~~~~d~~~~~~  227 (297)
T cd02896         204 S---PLSHAANRKLLSLAKRDGNGWYW  227 (297)
T ss_pred             C---hhhHHHHHHHHHHhhhCCCccee
Confidence            3   25788999999999999998764

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.51  E-value=1.4e-12  Score=109.27  Aligned_cols=167  Identities=14%  Similarity=0.118  Sum_probs=112.2

Q ss_pred             HHHHHHHHhCCCCCcCHHHHHHHH-------HhccCCCCCccCCCCC--CCChHHHHHHHHHHHhcccCCCCC---HHHH
Q 027177           38 WGLTTLDILGKLDAVDEEDVISWI-------LKCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKVDILD---ADKV  105 (227)
Q Consensus        38 ~~l~~l~ll~~~~~~~~~~~i~~l-------~~~q~~dGgf~~~~~~--~~~~~~T~~al~~L~~l~~~~~~~---~~~~  105 (227)
                      +++.-|...+..++..++++++||       ++.|++||||+.+...  .++...|.+++.+|........++   ++++
T Consensus        28 ~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra  107 (292)
T cd02897          28 YVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQA  107 (292)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHH
Confidence            444444444433332344555555       5689999999876443  678999999999998876432232   6889


Q ss_pred             HHHHHhccCCCCCcccCCC---------CCCCccchhHHHHHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCCCCCCC
Q 027177          106 SNYIVGLQNEDGSFSGDIW---------GEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGES  175 (227)
Q Consensus       106 ~~~l~~~Q~~dGg~~~~~~---------~~~d~~~t~~a~~~L~~~g~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~  175 (227)
                      ++||.+.|++||+|.....         ..+++..|.+++.+|...|.. ..+.++++++||.+.+.+          ..
T Consensus       108 ~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~  177 (292)
T cd02897         108 LTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------IS  177 (292)
T ss_pred             HHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CC
Confidence            9999999999999985311         112344577777778777763 245689999999997763          34


Q ss_pred             chhhchHHHHHHHHhcCCCCCCHHHHHHHHHc---cCccCCCcCC
Q 027177          176 HSGQIFCCVGALAIAGALHHVDKDLLGWWLCE---RQVKSGGLNG  217 (227)
Q Consensus       176 ~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~---~Q~~~GGf~~  217 (227)
                      +++.++.+..+|..++.   ....+++++|..   ++...|+|..
T Consensus       178 ~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~~  219 (292)
T cd02897         178 DPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWSR  219 (292)
T ss_pred             CHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCCc
Confidence            57778888888888883   224455555544   4555667753

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.45  E-value=5.5e-14  Score=100.56  Aligned_cols=105  Identities=21%  Similarity=0.283  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCccch
Q 027177           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFS  132 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t  132 (227)
                      ++++++||++.|++||+|....  .++...|.+++.+|...+... ...++++++||.+.|++||||...+  ......|
T Consensus         1 i~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~--~~~~~~t   76 (109)
T PF13243_consen    1 IKRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSG--GEYVSMT   76 (109)
T ss_dssp             ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred             Cccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcC--CCCHHHH
Confidence            4689999999999999997653  356788888888887776432 2237999999999999999999752  2223334


Q ss_pred             hHHHHHHHHhhc-cCcccHHHHHHHHHhccC
Q 027177          133 YIAICCLSILQR-LDKINVDKAVEYIVSCKN  162 (227)
Q Consensus       133 ~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~  162 (227)
                      ..++.+|.+.+. ...+.++++++||++.|.
T Consensus        77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   77 AAAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            444555554443 245678999999999875

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.42  E-value=2.8e-13  Score=80.75  Aligned_cols=44  Identities=45%  Similarity=1.005  Sum_probs=41.6

Q ss_pred             ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhc
Q 027177          148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (227)
Q Consensus       148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g  191 (227)
                      ++++++++||++||++||||+..|+.++|+.+|+|++++|.++|
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999999876

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.40  E-value=3.9e-12  Score=113.27  Aligned_cols=189  Identities=21%  Similarity=0.235  Sum_probs=131.1

Q ss_pred             chHHHHHHHHHHHHHhCCCCC--cCHHHHHHHHHhccCC---C------------CCccCCCCCCC--ChHHHHHHHHHH
Q 027177           31 LRLNGAYWGLTTLDILGKLDA--VDEEDVISWILKCQDE---S------------GGFAGNIGHDP--HVLYTLSAVQVL   91 (227)
Q Consensus        31 ~~~~~~y~~l~~l~ll~~~~~--~~~~~~i~~l~~~q~~---d------------Ggf~~~~~~~~--~~~~T~~al~~L   91 (227)
                      +-+|.|-++|.++-..+..++  ....++.+||.+.|-.   .            |||..+.....  -..+|.-++...
T Consensus       415 sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~  494 (760)
T KOG0497|consen  415 SQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCC  494 (760)
T ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHH
Confidence            567888788877766665433  2467999999998742   2            34433332222  234666677666


Q ss_pred             HhcccC------CCCCHHH---HHHHHHhccCCCCCcccC-------------C---CCC-----CCccchhHHHHHHHH
Q 027177           92 ALFDKV------DILDADK---VSNYIVGLQNEDGSFSGD-------------I---WGE-----VDTRFSYIAICCLSI  141 (227)
Q Consensus        92 ~~l~~~------~~~~~~~---~~~~l~~~Q~~dGg~~~~-------------~---~~~-----~d~~~t~~a~~~L~~  141 (227)
                      .+++..      +.+++++   +++.|..+|..+|||..-             |   ...     +-+..|-.++.+|..
T Consensus       495 lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~  574 (760)
T KOG0497|consen  495 LLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVY  574 (760)
T ss_pred             HHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHh
Confidence            555431      3456655   678899999999998742             1   011     123334455666666


Q ss_pred             hhccC--------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC--CCCCHHHHHHHHHccCcc
Q 027177          142 LQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVK  211 (227)
Q Consensus       142 ~g~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~wL~~~Q~~  211 (227)
                      +....        ...++++++||.+.|.+||+|..+++ ..-.+.|++|+.+|..+|+.  ....++++++||++.|++
T Consensus       575 F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWg-vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~  653 (760)
T KOG0497|consen  575 FHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWG-VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNP  653 (760)
T ss_pred             hcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhh-HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcc
Confidence            65421        23578899999999999999998776 36678899999999999974  345689999999999999


Q ss_pred             CCCcCCCCC
Q 027177          212 SGGLNGRPE  220 (227)
Q Consensus       212 ~GGf~~~~~  220 (227)
                      +|||+..+-
T Consensus       654 ~GGWgEs~l  662 (760)
T KOG0497|consen  654 DGGWGESYL  662 (760)
T ss_pred             cCCCccccc
Confidence            999987653

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=99.27  E-value=1.3e-11  Score=108.35  Aligned_cols=195  Identities=19%  Similarity=0.192  Sum_probs=132.6

Q ss_pred             CCCCcchhhcc--cchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCC-------------------C
Q 027177           19 KKDSFESVVME--HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG-------------------H   77 (227)
Q Consensus        19 ~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~-------------------~   77 (227)
                      ..|+|.++...  -.+.-.  ++....++....+..+.+.+++|+...|+..|||...+.                   +
T Consensus       248 ~~g~W~f~~~~~~ypd~d~--T~~~~~al~~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~  325 (517)
T COG1657         248 SPGGWGFSNINTGYPDADD--TAGVVRALIGVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVD  325 (517)
T ss_pred             CCCccceeecccCCCCchh--hhHHHHHHHhhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcccccc
Confidence            46777655432  111111  233333333333334777899999999999999987642                   2


Q ss_pred             CCChHHHHHHHHHHHhcccCC----CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHH---HHHHHhhccC--cc
Q 027177           78 DPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAI---CCLSILQRLD--KI  148 (227)
Q Consensus        78 ~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~---~~L~~~g~~~--~~  148 (227)
                      .+.+.+|...+.+|+.++...    ...++++++||++.|.++|.|.+ .|.   ++++|.+.   .++++.|...  ..
T Consensus       326 ~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g-~w~---v~~iY~~s~a~~~l~~~g~~~~~~~  401 (517)
T COG1657         326 PSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYG-RWG---VCYIYGTSGALSALALVGETDENEV  401 (517)
T ss_pred             CCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceee-EEE---EEEEEehhhhhhhhhccCccccchH
Confidence            334445554555555554422    34578999999999999999987 233   35666555   4455556532  23


Q ss_pred             cHHHHHHHHHhccCCCCCcCCCCCC----------CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCC
Q 027177          149 NVDKAVEYIVSCKNLDGGFGCTPGG----------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       149 ~~~~~~~~l~~~Q~~dGGf~~~~~~----------~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      .+.+++.|+.++|++||||+.....          .+-...|.+++.++..+..+....+++.+++|.+.|.++|-|+..
T Consensus       402 ~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~  481 (517)
T COG1657         402 LVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREA  481 (517)
T ss_pred             HHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccc
Confidence            5789999999999999999986432          244557888988888887765555889999999999999988776


Q ss_pred             C
Q 027177          219 P  219 (227)
Q Consensus       219 ~  219 (227)
                      +
T Consensus       482 ~  482 (517)
T COG1657         482 E  482 (517)
T ss_pred             e
Confidence            5

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.27  E-value=1.6e-10  Score=96.16  Aligned_cols=145  Identities=19%  Similarity=0.109  Sum_probs=103.3

Q ss_pred             CHHHHHHHHHhccCCCCCccCCCCC-CCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCC----
Q 027177           53 DEEDVISWILKCQDESGGFAGNIGH-DPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW----  124 (227)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~-~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~----  124 (227)
                      .+++++++|.++|++||||+.+++. .++...|.+++.+|..+++...++   ++++++||.+.|.+||+|.....    
T Consensus        50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~  129 (282)
T cd02891          50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR  129 (282)
T ss_pred             HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence            4678999999999999999999887 889999999999998776533333   68899999999999999986422    


Q ss_pred             -----CCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHH
Q 027177          125 -----GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD  199 (227)
Q Consensus       125 -----~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~  199 (227)
                           ..++...|.+++.+|...|......++++++||.+....          ..++...+....+|..+|.  .....
T Consensus       130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~  197 (282)
T cd02891         130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRAD  197 (282)
T ss_pred             hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHH
Confidence                 123344567777777777764445688999999987643          1223334444455555654  22345


Q ss_pred             HHHHHHHccC
Q 027177          200 LLGWWLCERQ  209 (227)
Q Consensus       200 ~~~~wL~~~Q  209 (227)
                      ++++-|.+.-
T Consensus       198 ~~l~~l~~~~  207 (282)
T cd02891         198 EALKKLLEAA  207 (282)
T ss_pred             HHHHHHHHHh
Confidence            5566665553

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.24  E-value=8.2e-12  Score=74.40  Aligned_cols=44  Identities=39%  Similarity=0.704  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhh
Q 027177          100 LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (227)
Q Consensus       100 ~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g  143 (227)
                      +|++++++||.++|++||||+.++++++|+.+|||++++|.++|
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999999876

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=98.91  E-value=2.2e-09  Score=94.49  Aligned_cols=167  Identities=21%  Similarity=0.237  Sum_probs=116.5

Q ss_pred             HHHHHHHhccCCCCCccCCCC--CCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCC---------
Q 027177           56 DVISWILKCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIW---------  124 (227)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~---------  124 (227)
                      +...|-...+..-|+|+....  ..++...|..++.++......  .+.+++++|+...|+..|||.....         
T Consensus       237 ~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~~--~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~  314 (517)
T COG1657         237 KYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQSL--PNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRL  314 (517)
T ss_pred             HhhccccccccCCCccceeecccCCCCchhhhHHHHHHHhhcch--hhHHhhhhHhhhcccccCceeeeccccccHHHhh
Confidence            333443333445677766543  567888888888887776532  2356799999999999999985421         


Q ss_pred             ------C-CCC---ccchhHHHHHHHHhhc-cC---cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHh
Q 027177          125 ------G-EVD---TRFSYIAICCLSILQR-LD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (227)
Q Consensus       125 ------~-~~d---~~~t~~a~~~L~~~g~-~~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~  190 (227)
                            + ..+   ...|...+.+|..++. ..   ...++++++||++.|.++|.|-...+ ....+.|..++.+|...
T Consensus       315 L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~-v~~iY~~s~a~~~l~~~  393 (517)
T COG1657         315 LPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG-VCYIYGTSGALSALALV  393 (517)
T ss_pred             CCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE-EEEEEehhhhhhhhhcc
Confidence                  0 011   1223333444444433 11   35689999999999999999987765 35677888899999998


Q ss_pred             cCCCC--CCHHHHHHHHHccCccCCCcCCCCCCCCCC
Q 027177          191 GALHH--VDKDLLGWWLCERQVKSGGLNGRPEKLPDV  225 (227)
Q Consensus       191 g~~~~--~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~  225 (227)
                      |..+.  ..+++++.||..+|+++|||+.....++|-
T Consensus       394 g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~  430 (517)
T COG1657         394 GETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDP  430 (517)
T ss_pred             CccccchHHHHHHHHHhhhccccCCCccccccccccc
Confidence            87653  347899999999999999999887766653

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.86  E-value=1.5e-08  Score=82.96  Aligned_cols=151  Identities=21%  Similarity=0.178  Sum_probs=100.5

Q ss_pred             HHHHHHhccCCCCCccCC-CCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCCC-------
Q 027177           57 VISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIWG-------  125 (227)
Q Consensus        57 ~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~~-------  125 (227)
                      ..+-+++.+++||+|+.+ ...+++...|.+++..|....+.-.+|   +.++++||.+.|++||+|.....-       
T Consensus         2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g   81 (246)
T PF07678_consen    2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG   81 (246)
T ss_dssp             HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG
T ss_pred             chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC
Confidence            345678899999999999 667889999999999999888764454   588999999999999999864210       


Q ss_pred             --CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCC
Q 027177          126 --EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV  196 (227)
Q Consensus       126 --~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~  196 (227)
                        ..++..|..++.+|...+..       ....++++++||.+...          ...+++..+.+--+|.+++  +.+
T Consensus        82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~----------~~~~~Y~lAl~aYAL~la~--~~~  149 (246)
T PF07678_consen   82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD----------NIQDPYTLALVAYALALAG--DSP  149 (246)
T ss_dssp             GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG----------CTSSHHHHHHHHHHHHHTT--TCH
T ss_pred             CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc----------ccCCHHHHHHHHHHHHhhc--ccc
Confidence              12344555666666655521       23468899999987611          1123333333333444555  345


Q ss_pred             CHHHHHHHHHccCccCCCcCCCC
Q 027177          197 DKDLLGWWLCERQVKSGGLNGRP  219 (227)
Q Consensus       197 ~~~~~~~wL~~~Q~~~GGf~~~~  219 (227)
                      ..+.+.+-|.+....+|+...++
T Consensus       150 ~~~~~~~~L~~~a~~~~~~~~W~  172 (246)
T PF07678_consen  150 QASKLLNKLNSMATTEGGLRYWS  172 (246)
T ss_dssp             HHHHHHHHHHCHCEETTTTCEE-
T ss_pred             hHHHHHHHHHHhhhhccccCccc
Confidence            57778888888877777765444

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=1.5e-06  Score=85.47  Aligned_cols=196  Identities=15%  Similarity=0.157  Sum_probs=116.2

Q ss_pred             cHHHHHHHHHHc-------ccCCCCcchhhc--ccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCcc
Q 027177            5 AADKHVKYIISV-------EKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFA   72 (227)
Q Consensus         5 ~~~~~~~yl~~~-------q~~dg~~~~~~~--~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~   72 (227)
                      -+.++++||...       +++||+|..+..  .....|.|-|++.++......   ++.-+.++++||...|.++|.|-
T Consensus       965 ~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen  965 LKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEe
Confidence            356788888874       779999988876  577889999999999998775   34457799999999999999986


Q ss_pred             CCCC--------CCCCh-HHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhh
Q 027177           73 GNIG--------HDPHV-LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (227)
Q Consensus        73 ~~~~--------~~~~~-~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g  143 (227)
                      ..-.        ..... ..|...+..+...   +.....+++.|+.+.-.. +        ..+....-.++.||.+.+
T Consensus      1045 e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~-~--------~~~~~~~a~~ayAl~l~~ 1112 (1436)
T KOG1366|consen 1045 EVGEVLHNEMQGGLQDIVALTAIVLSVILDV---DNASIQKAVAYLEESLDS-G--------SMDVYTVAITAYALQLAK 1112 (1436)
T ss_pred             ccccccchhhhcCCCCcceeeeEeeeeeccc---hhhHHHHHHHHHhhccCc-c--------ccccchHHHHHHHHHhcc
Confidence            4321        11111 1111111111110   123356778888876311 1        111111222234454444


Q ss_pred             ccCcccHHHHHHHHHhcc--CCC--CCcC----------CCC-CCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177          144 RLDKINVDKAVEYIVSCK--NLD--GGFG----------CTP-GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCER  208 (227)
Q Consensus       144 ~~~~~~~~~~~~~l~~~Q--~~d--GGf~----------~~~-~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~  208 (227)
                      .+.   ..+++.-+.+.-  ..|  ..|.          ..+ ....+.++|.||+.++..+...+  .+...++||.+.
T Consensus      1113 sp~---a~~~~~~l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~~~~~~~~~--~~~pivrWl~~q 1187 (1436)
T KOG1366|consen 1113 SPQ---AAKALAKLKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLAYLLLAQVD--YALPIVRWLVEQ 1187 (1436)
T ss_pred             Cch---HHHHHHhhhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHHHHHhcccC--cCchhHhhhhhh
Confidence            422   112222122211  111  1111          111 12357889999999998887654  466789999999


Q ss_pred             CccCCCcCC
Q 027177          209 QVKSGGLNG  217 (227)
Q Consensus       209 Q~~~GGf~~  217 (227)
                      |+..|||+-
T Consensus      1188 r~~~GGf~S 1196 (1436)
T KOG1366|consen 1188 RNALGGFSS 1196 (1436)
T ss_pred             hcccCceee
Confidence            999999964

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=98.38  E-value=7.7e-06  Score=67.63  Aligned_cols=70  Identities=20%  Similarity=0.266  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhccCCCCCcccCC-CCC-CCccchhH---HHHHHHHhhcc-----------------CcccHHHHHHHHHh
Q 027177          102 ADKVSNYIVGLQNEDGSFSGDI-WGE-VDTRFSYI---AICCLSILQRL-----------------DKINVDKAVEYIVS  159 (227)
Q Consensus       102 ~~~~~~~l~~~Q~~dGg~~~~~-~~~-~d~~~t~~---a~~~L~~~g~~-----------------~~~~~~~~~~~l~~  159 (227)
                      ..++++||++.|.++|||...- ... ....-||.   .+.++.+|...                 ....++|+++||++
T Consensus        69 ~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILk  148 (290)
T TIGR02474        69 ARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILK  148 (290)
T ss_pred             HHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999998642 111 01111221   22333333211                 12357899999999


Q ss_pred             ccCCCCCcCCCC
Q 027177          160 CKNLDGGFGCTP  171 (227)
Q Consensus       160 ~Q~~dGGf~~~~  171 (227)
                      +|-++|||...+
T Consensus       149 tQ~~~gg~~t~W  160 (290)
T TIGR02474       149 TQVVQNGKLTVW  160 (290)
T ss_pred             hhcccCCcCCch
Confidence            999888776553

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=97.88  E-value=7.4e-05  Score=61.88  Aligned_cols=129  Identities=14%  Similarity=0.096  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhCCC--C---CcCHHHHHHHHHhccCCCCCccCCCC----CCCChH----HHHHHHHHHHhcccC----
Q 027177           35 GAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESGGFAGNIG----HDPHVL----YTLSAVQVLALFDKV----   97 (227)
Q Consensus        35 ~~y~~l~~l~ll~~~--~---~~~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~----~T~~al~~L~~l~~~----   97 (227)
                      .|+..+.-|+.+-..  +   ....+++++||++.|.++|||..+..    +..|+.    .+..+|..|..+...    
T Consensus        45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~  124 (290)
T TIGR02474        45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF  124 (290)
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence            344555555544321  1   13577999999999999999986532    222221    233455666444221    


Q ss_pred             CC----------CCHHHHHHHHHhccCCCCCcccCCCC----------------C-CCccchhHHHHHHHHhhc--cC--
Q 027177           98 DI----------LDADKVSNYIVGLQNEDGSFSGDIWG----------------E-VDTRFSYIAICCLSILQR--LD--  146 (227)
Q Consensus        98 ~~----------~~~~~~~~~l~~~Q~~dGg~~~~~~~----------------~-~d~~~t~~a~~~L~~~g~--~~--  146 (227)
                      ..          ..++|+++||++.|.++|||-+. |+                | +.++..-.+.....|+..  ++  
T Consensus       125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~-Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~  203 (290)
T TIGR02474       125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTV-WCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAE  203 (290)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCc-hhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHH
Confidence            00          12588999999999998876541 11                1 122222222222233332  22  


Q ss_pred             -cccHHHHHHHHHhccCCC
Q 027177          147 -KINVDKAVEYIVSCKNLD  164 (227)
Q Consensus       147 -~~~~~~~~~~l~~~Q~~d  164 (227)
                       ...|+.+++|+.+..-++
T Consensus       204 i~~ai~~A~~W~~~~~i~g  222 (290)
T TIGR02474       204 IKEAIRAGVAWFDTSRIRG  222 (290)
T ss_pred             HHHHHHHHHHHHHHCCCCC
Confidence             125788999999987654

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=96.77  E-value=0.0019  Score=53.63  Aligned_cols=134  Identities=15%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhcccCCC-----CCHHHHHHHHHhccCCCCCcccC-CCCC-CCccchh---HHHHHHHHhhc-----cC-
Q 027177           83 YTLSAVQVLALFDKVDI-----LDADKVSNYIVGLQNEDGSFSGD-IWGE-VDTRFSY---IAICCLSILQR-----LD-  146 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~-----~~~~~~~~~l~~~Q~~dGg~~~~-~~~~-~d~~~t~---~a~~~L~~~g~-----~~-  146 (227)
                      .|...|.-|+.+-....     ....|+++||++.|.++|||... |... -....||   ..+..|.+|..     .+ 
T Consensus        40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~  119 (289)
T PF09492_consen   40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF  119 (289)
T ss_dssp             TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred             hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence            45555555554422111     12588999999999999999864 2211 1112233   12334444321     11 


Q ss_pred             -----------cccHHHHHHHHHhccC----CCCCcCCCCCC-----------C-CchhhchHHHHHHHHhcCCCCC---
Q 027177          147 -----------KINVDKAVEYIVSCKN----LDGGFGCTPGG-----------E-SHSGQIFCCVGALAIAGALHHV---  196 (227)
Q Consensus       147 -----------~~~~~~~~~~l~~~Q~----~dGGf~~~~~~-----------~-~~~~~T~~al~aL~~~g~~~~~---  196 (227)
                                 ...++|++++|+++|-    +-.+|+..-..           | +..+ +.-.+..+..|..+..+   
T Consensus       120 ~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls-~~ES~~iv~~LM~~~~ps~~  198 (289)
T PF09492_consen  120 AFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLS-GSESVGIVRFLMSLPNPSPE  198 (289)
T ss_dssp             TTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEE-CCCHHHHHHHHCTSSS--HH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccc-cccHHHHHHHHhcCCCCCHH
Confidence                       2357899999999997    23577754110           1 1111 11123333333333222   


Q ss_pred             ---CHHHHHHHHHccCccCCCcCC
Q 027177          197 ---DKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       197 ---~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                         .++.++.||.+.+.++.-|..
T Consensus       199 v~~aI~~AvaWl~~~ki~g~~~~~  222 (289)
T PF09492_consen  199 VLAAIEAAVAWLESVKIPGKRWEK  222 (289)
T ss_dssp             HHHHHHHHHHHHCCTSEEEEEE-G
T ss_pred             HHHHHHHHHHHHHhCcCCCceeEe
Confidence               378899999988766554433

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=96.60  E-value=0.0052  Score=51.09  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=26.8

Q ss_pred             CccchhHHHHHHHHhhc-----cCcccHHHHHHHHHhccCCCCCcCCC
Q 027177          128 DTRFSYIAICCLSILQR-----LDKINVDKAVEYIVSCKNLDGGFGCT  170 (227)
Q Consensus       128 d~~~t~~a~~~L~~~g~-----~~~~~~~~~~~~l~~~Q~~dGGf~~~  170 (227)
                      |-..|+..+.-|..+-.     .......|+++||++.|.|+|||...
T Consensus        37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~   84 (289)
T PF09492_consen   37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQF   84 (289)
T ss_dssp             GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSE
T ss_pred             cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCcc
Confidence            44556666655543321     12346789999999999999999865

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=95.37  E-value=0.043  Score=46.48  Aligned_cols=61  Identities=18%  Similarity=0.127  Sum_probs=42.5

Q ss_pred             cHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC---CCHHHHHHHHHccCccCCCcCC
Q 027177          149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       149 ~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~---~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                      .++++++.|++.|.+||.||.       .+.|.-|+.+|...+....   ++-.++.++|++. .++|.|+.
T Consensus       216 ~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~n  279 (326)
T PF01122_consen  216 AIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQN  279 (326)
T ss_dssp             HHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-S
T ss_pred             HHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCCC
Confidence            356778889999999999983       4568999999998886422   3357788888875 35888864

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

>PLN02592 ent-copalyl diphosphate synthase

Probab=94.53  E-value=0.2  Score=47.65  Aligned_cols=59  Identities=15%  Similarity=0.199  Sum_probs=40.7

Q ss_pred             CHHHHHHHHHhccCCCCCccCCCCC--CCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhc
Q 027177           53 DEEDVISWILKCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGL  112 (227)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~--~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~  112 (227)
                      ..-.+++||+..|.+||+|+.....  ..-+.+|.+++.+|.-=+.. ...+++++.||.+.
T Consensus       116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~rGl~fi~~n  176 (800)
T PLN02592        116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH-PEKCEKGMSFFREN  176 (800)
T ss_pred             CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc-HHHHHHHHHHHHHH
Confidence            5568999999999999999874321  12368899888888542221 11256777887753

>PLN02592 ent-copalyl diphosphate synthase

Probab=94.48  E-value=0.045  Score=51.81  Aligned_cols=61  Identities=16%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             cccHHHHHHHHHhccCCCCCcCCCCCC--CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177          147 KINVDKAVEYIVSCKNLDGGFGCTPGG--ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCER  208 (227)
Q Consensus       147 ~~~~~~~~~~l~~~Q~~dGGf~~~~~~--~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~  208 (227)
                      .+....+++||++.|.+|||||..+..  .--...|..+|.||..=+. .+..+++++.||.++
T Consensus       114 ~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fi~~n  176 (800)
T PLN02592        114 TPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNL-HPEKCEKGMSFFREN  176 (800)
T ss_pred             CCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence            345678999999999999999974321  1123567777777765332 223367788887654

>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins

Probab=94.22  E-value=1.9  Score=40.21  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=88.0

Q ss_pred             cchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC-HHHHHHH
Q 027177           30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD-ADKVSNY  108 (227)
Q Consensus        30 ~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~-~~~~~~~  108 (227)
                      .+++..+||++..+..|+...+ +.+.+++++.+.-.+.         .+++...|+++.+...++  +..+ ..++.+-
T Consensus        46 ~~dLes~yyav~glk~Lg~~~~-~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~--C~~~~~~~~~~~  113 (636)
T PF05817_consen   46 SSDLESAYYAVLGLKLLGIKVP-DSKAACKFLKKALDES---------SNDLESLFYAASASKALK--CKVSVSNEVKSL  113 (636)
T ss_pred             cccHHHHHHHHhhHHHhCCCCC-ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcC--CcccCcHHHHHH
Confidence            3468889999999999998754 5889999998854321         135888899999888886  4444 3445555


Q ss_pred             HHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHH
Q 027177          109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL  187 (227)
Q Consensus       109 l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL  187 (227)
                      +...-++          .+++...|+++.+|..+|. ....+.++.+.-|...+..|.          .+..+.+|+.++
T Consensus       114 l~~~l~~----------~s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~al~~a  173 (636)
T PF05817_consen  114 LKAALSE----------DSSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYALHAA  173 (636)
T ss_pred             HHHHhcC----------CccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHHHHHH
Confidence            5554322          2355669999999999986 223366777777777666533          233455666666


Q ss_pred             HHhc
Q 027177          188 AIAG  191 (227)
Q Consensus       188 ~~~g  191 (227)
                      ..++
T Consensus       174 a~L~  177 (636)
T PF05817_consen  174 AQLS  177 (636)
T ss_pred             Hhhc
Confidence            6655

The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=94.12  E-value=0.15  Score=51.36  Aligned_cols=87  Identities=15%  Similarity=0.216  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhCCCCCcCHHHHHHHHHh-------ccCCCCCccCCCC--CCCChHHHHHHHHHHHhcccCCCCC---HH
Q 027177           36 AYWGLTTLDILGKLDAVDEEDVISWILK-------CQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILD---AD  103 (227)
Q Consensus        36 ~y~~l~~l~ll~~~~~~~~~~~i~~l~~-------~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~---~~  103 (227)
                      .++++.=|...+...+...++++.+|..       .+++||.|+.+-.  .....+.|.+++..+......-.+|   ..
T Consensus       948 ni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~ 1027 (1436)
T KOG1366|consen  948 NIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVIT 1027 (1436)
T ss_pred             hhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHH
Confidence            4466666666666554456677777744       4468999988765  5567889999999998886654344   57


Q ss_pred             HHHHHHHhccCCCCCcccC
Q 027177          104 KVSNYIVGLQNEDGSFSGD  122 (227)
Q Consensus       104 ~~~~~l~~~Q~~dGg~~~~  122 (227)
                      ++++||...|+++|.|...
T Consensus      1028 ~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1028 QALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred             HHHHHHHHhhccCceEecc
Confidence            8999999999999999864

>PLN02279 ent-kaur-16-ene synthase

Probab=94.12  E-value=0.093  Score=49.81  Aligned_cols=74  Identities=11%  Similarity=0.007  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCC----CchhhchHHHHHHHHhcCCCCCCHHHHHHHHHc
Q 027177          132 SYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGE----SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCE  207 (227)
Q Consensus       132 t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~----~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~  207 (227)
                      |.|+...=.. +....+....+++||++.|.+||+||..+...    --...|..+|.||..=+.. +..+++.+.|+.+
T Consensus        58 TAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~-~~~~~~gl~fi~~  135 (784)
T PLN02279         58 TAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG-EEQINKGLQFIEL  135 (784)
T ss_pred             hHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC-cccchhhHHHHHH
Confidence            5554433222 33334556789999999999999999642211    1235687778887765432 2234566666654

>PLN02279 ent-kaur-16-ene synthase

Probab=93.36  E-value=0.46  Score=45.21  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             cCHHHHHHHHHhccCCCCCccCCCCCC----CChHHHHHHHHHHHhcccCCCCCHHHHHHHHHh
Q 027177           52 VDEEDVISWILKCQDESGGFAGNIGHD----PHVLYTLSAVQVLALFDKVDILDADKVSNYIVG  111 (227)
Q Consensus        52 ~~~~~~i~~l~~~q~~dGgf~~~~~~~----~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~  111 (227)
                      ..-..+++||++-|.+||+|+......    .-+.+|.+++.+|.-=+.. ...+++.+.||.+
T Consensus        73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~-~~~~~~gl~fi~~  135 (784)
T PLN02279         73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG-EEQINKGLQFIEL  135 (784)
T ss_pred             CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC-cccchhhHHHHHH
Confidence            356789999999999999998642211    2467899988888643322 1124555666653

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=91.59  E-value=1.2  Score=37.94  Aligned_cols=118  Identities=18%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             HHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCC----------CHHHHHH
Q 027177           38 WGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL----------DADKVSN  107 (227)
Q Consensus        38 ~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~----------~~~~~~~  107 (227)
                      +++.+|++.-.... .....+.-|....+.+..|+.    .-++..++.|+.+|..+......          -++++++
T Consensus       148 ~sL~vLALCv~~~~-~~~~~v~kL~~~~~~~~~~~~----~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~  222 (326)
T PF01122_consen  148 YSLGVLALCVHNKR-VSLSVVAKLLKAENHNFYHGS----QFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVE  222 (326)
T ss_dssp             HHHHHHHHHHTTHH-HHHHHHHHHHHHHHSSTSS-S----TCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHccCCC-cCHHHHHHHHHHHHhhcccCC----CCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHH
Confidence            56666666543222 233444555555555522221    22455555577777666432111          1467888


Q ss_pred             HHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCc---ccHHHHHHHHHhccCCCCCcC
Q 027177          108 YIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFG  168 (227)
Q Consensus       108 ~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~---~~~~~~~~~l~~~Q~~dGGf~  168 (227)
                      .|.+.|++||-|+.       +..|--|+.+|...+....   .+-.++.+.|+... ++|.|.
T Consensus       223 kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~  278 (326)
T PF01122_consen  223 KILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQ  278 (326)
T ss_dssp             HHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred             HHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence            89999999999874       2456666777766665322   23467888888854 489997

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
1dce_B	331	Crystal Structure Of Rab Geranylgeranyltransferase		4e-81
3pz1_B	330	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		4e-81
2h6i_B	437	W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN		7e-22
2h6g_B	437	W102t Protein Farnesyltransferase Mutant Complexed		8e-22
2h6h_B	437	Y365f Protein Farnesyltransferase Mutant Complexed		3e-21
1jcq_B	437	Crystal Structure Of Human Protein Farnesyltransfer		3e-21
3euv_B	427	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		4e-21
1n94_B	397	Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf		1e-20
1n95_B	402	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		1e-20
1ft2_B	401	Co-Crystal Structure Of Protein Farnesyltransferase		1e-20
1o1r_B	427	Structure Of Fpt Bound To Ggpp Length = 427		1e-20
1nl4_B	401	Crystal Structure Of Rat Farnesyl Transferase In Co		1e-20
3pz4_B	426	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		1e-20
1ft1_B	437	Crystal Structure Of Protein Farnesyltransferase At		1e-20
2zir_B	440	Crystal Structure Of Rat Protein Farnesyltransferas		1e-20
1n4p_B	377	Protein Geranylgeranyltransferase Type-I Complexed		3e-18
3q73_B	520	Cryptococcus Neoformans Protein Farnesyltransferase		9e-08

>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331

Iteration: 1
 Score =  297 bits (760), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)
Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77
Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330

Iteration: 1
 Score =  297 bits (760), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)
Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 17  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 76
Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 77  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 136
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 137 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 196
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 197 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 238

>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTTAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 51  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 108
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 109 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 168
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 169 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 228
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 229 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 275

>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 72  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 129
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 130 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 189
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 190 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 249
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 250 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 296

>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 76  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 133
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 134 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 193
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 194 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 253
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 254 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 300

>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 37/252 (14%)
Query: 7   DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
           D+HV++    ++   + + S  +E  RL  A++ L+ LD+L  LD V+++D+I WI    
Sbjct: 23  DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62  -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
            L  +D S     GF G        N   +P         H+  T + +  L +  D + 
Sbjct: 81  VLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLS 140
Query: 99  ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
            +D +     +  LQ EDGSF     G E D RF Y A C   +L     +++ KA+ YI
Sbjct: 141 RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
               + D G     G ESH G  FC + +L + G L  V  +K+L  +  W   RQ    
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDV 225
           G +GRP K  D 
Sbjct: 259 GYHGRPNKPVDT 270

>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 23/150 (15%)
Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGNIGHD--PHVLYTLSAVQVLAL 93
           +W + +LD+LG  LD   ++ V+S +L      GGF G   +   PH+L T ++V  LA+
Sbjct: 93  FWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAI 152
Query: 94  FDK-------VDILDADK-VSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL 145
                      D+  A + +  + +  +  DG F     GEVD R +Y   C L +   L
Sbjct: 153 AGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTY---CLLVVATLL 209
Query: 146 DKI------NVDKAVEYIVSCKNLDGGFGC 169
           D I      NVDK   ++ +C+  +GGF C
Sbjct: 210 DIITPELLHNVDK---FVSACQTYEGGFAC 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	2e-90
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	6e-31
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	1e-16
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	2e-06
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	5e-05
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	1e-82
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	9e-29
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	6e-78
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	1e-72
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	2e-35
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	5e-25
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	1e-10
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	3e-06
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	2e-71
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	5e-18
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	1e-14
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	8e-11
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	1e-05
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	1e-05

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  268 bits (685), Expect = 2e-90
 Identities = 130/223 (58%), Positives = 173/223 (77%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I 
Sbjct: 17  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 76

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GD
Sbjct: 77  SCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD 136

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           IWGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+C
Sbjct: 137 IWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC 196

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           C G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 197 CTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  115 bits (288), Expect = 6e-31
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 1/194 (0%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           DK V Y+ S++K+  SF   +   +    ++  + TL +LGKLDA++ E  I ++L C +
Sbjct: 117 DKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 176

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
             GGF    G + H          LA+  ++  +++D +  ++   Q   G  +G     
Sbjct: 177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKL 236

Query: 127 VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC-KNLDGGFGCTPGGESHSGQIFCCVG 185
            D  +S+  +  L I+ RL  I+ +K   +I++C     GGF   PG           + 
Sbjct: 237 PDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIA 296

Query: 186 ALAIAGALHHVDKD 199
            L++ G        
Sbjct: 297 GLSLLGEEQIKPVS 310

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 76.3 bits (187), Expect = 1e-16
 Identities = 24/131 (18%), Positives = 56/131 (42%)

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           D  D L  +K ++YI    ++   +   +   +     Y  +  + ++ +L ++N ++ +
Sbjct: 13  DAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEIL 72

Query: 155 EYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG 214
            +I SC++  GG   + G + H       V  L +  ++H ++ D +  ++   Q + G 
Sbjct: 73  VFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGS 132

Query: 215 LNGRPEKLPDV 225
             G      D 
Sbjct: 133 FAGDIWGEIDT 143

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 37  YWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLYTLSAVQVLALFD 95
           +W L +L I+G+L  +D E + S+IL CQ +E+GGFA   G      +TL  +  L+L  
Sbjct: 243 WWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLG 302

Query: 96  KVDILDADKVSN 107
           +  I     V  
Sbjct: 303 EEQIKPVSPVFC 314

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 13/83 (15%), Positives = 35/83 (42%)

Query: 145 LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWW 204
            D + ++K  +YI S  +    +            ++  +  + + G LH ++K+ +  +
Sbjct: 15  PDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVF 74

Query: 205 LCERQVKSGGLNGRPEKLPDVVM 227
           +   Q + GG++      P ++ 
Sbjct: 75  IKSCQHECGGVSASIGHDPHLLY 97

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  252 bits (643), Expect = 1e-82
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
            L  +KH  Y+    ++        ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 72  VLQREKHFHYLKRGLRQLTD-AYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +     + +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190

Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250

Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDV 225
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D 
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDG 298

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  111 bits (277), Expect = 9e-29
 Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K ++Y+ S+++   SF   V   + +  AY   +   +   +     E    WI +CQ+
Sbjct: 175 EKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQN 234

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWG 125
             GG  G  G + H  YT   +  L +  +   L+   +  ++   Q   +G F G    
Sbjct: 235 WEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNK 294

Query: 126 EVDTRFSYIAICCLSILQRLDK-------------INVDKAVEYI-VSCKNLDGGFGCTP 171
            VD  +S+     L +L R                 +     EYI + C+   GG    P
Sbjct: 295 LVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKP 354

Query: 172 GGESHSGQIFCCVGALAIAG 191
           G          C+  L+IA 
Sbjct: 355 GKSRDFYHTCYCLSGLSIAQ 374

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score =  242 bits (618), Expect = 6e-78
 Identities = 55/266 (20%), Positives = 102/266 (38%), Gaps = 44/266 (16%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILG-KLDAVDEEDVISWI 61
            L   +H +++ S   +    + V ++  R    +W + +LD+LG  LD   ++ V+S +
Sbjct: 60  GLRKQEHTQFLASSFFQLPG-KFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTL 118

Query: 62  LKCQDESGGFAGNIGHD--PHVLYTLSAVQVLALFDKVD--------ILDADKVSNYIVG 111
           L      GGF G   +   PH+L T ++V  LA+                   +  + + 
Sbjct: 119 LHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMR 178

Query: 112 LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCT- 170
            +  DG F     GEVD R +Y  +   ++L  +    +    +++ +C+  +GGF C  
Sbjct: 179 CKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACAS 238

Query: 171 ----------------------PGGESHSGQIFCCVGALAIAGALH------HVDKDLLG 202
                                    E+H G   C + +  +  ++        +D +   
Sbjct: 239 FPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAAL 298

Query: 203 WWLCERQVK---SGGLNGRPEKLPDV 225
            W   +Q +    GG  GR  KL D 
Sbjct: 299 RWTVLQQGEPIEGGGFRGRTNKLVDG 324

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  224 bits (572), Expect = 1e-72
 Identities = 65/257 (25%), Positives = 101/257 (39%), Gaps = 35/257 (13%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             +   D+HV++     +         +E  RL  A++ L+ LD+L  LD V+++D+I W
Sbjct: 17  RLDFLRDRHVRFFQRCLQVLPE-RYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEW 75

Query: 61  ILKCQ--------------------------DESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           I   Q                                  +     H+  T + +  L + 
Sbjct: 76  IYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIIL 135

Query: 95  -DKVDILDADKVSNYIVGLQNEDGSFSG-DIWGEVDTRFSYIAICCLSILQRLDKINVDK 152
            D +  +D +     +  LQ EDGSF       E D RF Y A C   +L     +++ K
Sbjct: 136 GDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKK 195

Query: 153 AVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCER 208
           A+ YI    + D G     G ESH G  FC + +L + G L  V    + + +  W   R
Sbjct: 196 AISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMR 255

Query: 209 QVKSGGLNGRPEKLPDV 225
           Q    G +GRP K  D 
Sbjct: 256 Q--QNGYHGRPNKPVDT 270

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  128 bits (322), Expect = 2e-35
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)

Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALF 94
           Y GL+ L ILG  L  VD+E  ++ +   Q E G F     G +  + +   A  +  + 
Sbjct: 126 YTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYML 185

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           +    +D  K  +YI    + D   +     E     ++  I  L ++ +L+++  +K +
Sbjct: 186 NNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKEL 245

Query: 155 EYIVS--CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL-GWWLCERQVK 211
             I          G+   P     +   F     L +     + + +    + L  +   
Sbjct: 246 NRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRL 305

Query: 212 SGGLNGRPEKLPDV 225
            GG    P+  PD 
Sbjct: 306 VGGFAKWPDSHPDA 319

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  100 bits (249), Expect = 5e-25
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 10/192 (5%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLR-LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ 65
           +  +  + +++ +  SF +V       +   Y       +L     +D +  IS+I +  
Sbjct: 145 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSM 204

Query: 66  DESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG--LQNEDGSFSGDI 123
               G A   G + H   T   +  L L  K++ + ++K  N I    +  +   + G  
Sbjct: 205 SYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRP 264

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGFGCTPGGES---HSGQ 179
              VDT +S+     L +L+     N +K   YI+S ++ L GGF   P       H+  
Sbjct: 265 NKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHA-- 322

Query: 180 IFCCVGALAIAG 191
            +  +  L++  
Sbjct: 323 -YFGICGLSLME 333

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 59.4 bits (143), Expect = 1e-10
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAV----DEEDVISWIL 62
            K + YI       +               + G+ +L ++GKL+ V    +   +  W +
Sbjct: 194 KKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCI 253

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG-LQNEDGSFSG 121
             Q    G+ G         Y+      L L       + +K  NYI+       G F+ 
Sbjct: 254 MRQQ--NGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAK 311

Query: 122 DIWGEVDTRFSYIAICCLSILQRLDKINVD 151
                 D   +Y  IC LS+++      V 
Sbjct: 312 WPDSHPDALHAYFGICGLSLMEESGICKVH 341

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKC-QDESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           ++W   TL +L      + E   ++IL       GGFA      P  L+    +  L+L 
Sbjct: 273 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLM 332

Query: 95  DKVDILDADKVSN 107
           ++  I       N
Sbjct: 333 EESGICKVHPALN 345

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score =  222 bits (565), Expect = 2e-71
 Identities = 59/298 (19%), Positives = 101/298 (33%), Gaps = 76/298 (25%)

Query: 1   MGELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEE--DV 57
           M +L  +KH K+    +     + +S   +  +L   Y+ L  L ++ K    ++E    
Sbjct: 1   MNQLLINKHEKFFNRCLIGLPSTAQS--EDSNKLAIIYFCLHGLQLIQKFQFTNQELIYY 58

Query: 58  ISWILKCQDE------------SGGFAGNIGHDPHVLYTLSAVQVLALF--DKVDILDAD 103
            ++I+                            P++  TL A+  L +       I++  
Sbjct: 59  RNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRK 118

Query: 104 KVSNYIVGLQNEDGSFSG---------------DIWGEVDTRFSYIAICCLSILQRLDK- 147
           K+ N++   Q +DG   G                 +GE D R  Y+A+    +++  D  
Sbjct: 119 KIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNN 178

Query: 148 ------------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH 195
                       I++    ++I+   N++GGF  T   ESH G  FC + +L +      
Sbjct: 179 NNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLN-YPL 237

Query: 196 VDKDLLGWWLCERQVKS----------------------------GGLNGRPEKLPDV 225
                   WL  RQV                              GG NGR  KL D 
Sbjct: 238 EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDT 295

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score = 80.6 bits (198), Expect = 5e-18
 Identities = 42/250 (16%), Positives = 72/250 (28%), Gaps = 61/250 (24%)

Query: 37  YWGLTTLDILGK--LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL------------ 82
            + L  L IL       ++ + +++++ KCQ + G   G      +              
Sbjct: 98  LFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEP 157

Query: 83  ---YTLSAVQVLALFDKVDIL-------------DADKVSNYIVGLQNEDGSFSGDIWGE 126
                  A+ +  L    D               D   +  +I+   N +G FS  I  E
Sbjct: 158 DLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDE 217

Query: 127 VDTRFSYIAICCLSILQRLDK---------------------------INVDKAVEYIVS 159
               F++ AI  L +L    +                                   Y   
Sbjct: 218 SHLGFTFCAIASLKLLNYPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYY 277

Query: 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAI--AGALHHVDKDLL-GWWLCERQVKS-GGL 215
                GGF       S +   + C G+L       +  VD +    + L + Q +  GG 
Sbjct: 278 RNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGF 337

Query: 216 NGRPEKLPDV 225
              P+  PD 
Sbjct: 338 GRDPDSTPDP 347

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score = 71.0 bits (173), Expect = 1e-14
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 31/190 (16%)

Query: 33  LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLA 92
           +                  +D   +  +IL   + +GGF+  I  + H+ +T  A+  L 
Sbjct: 172 MKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLK 231

Query: 93  LFDKVDI---------------------------LDADKVSNYIVGLQNEDGSFSGDIWG 125
           L +                                      NY      + G F+G    
Sbjct: 232 LLNYPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENK 291

Query: 126 EVDTRFSYIAICCLSILQ--RLDKINVDKAVEYIVSC--KNLDGGFGCTPGGESHSGQIF 181
             DT +S+     L  +    +  ++++KA +Y+++     L GGFG  P         +
Sbjct: 292 LSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSY 351

Query: 182 CCVGALAIAG 191
             + +L++  
Sbjct: 352 LALASLSLWN 361

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 60.2 bits (145), Expect = 8e-11
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 36/193 (18%)

Query: 55  EDVISWILKCQDESGGFA-------------------GNIGHDPHVLYTLSAVQVLALFD 95
                WI+  Q  +GG+                    G +   P    T   ++    F 
Sbjct: 401 TKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFG 460

Query: 96  KVDILDA-DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL-QRLDKINVDKA 153
             D      +   Y+   Q  DGS+    WG      +   +  L  +     +  + KA
Sbjct: 461 YDDAWKVIRRAVEYLKREQKPDGSW-FGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKA 519

Query: 154 VEYIVSCKNLDGGFG----------CTPGGESHSGQIFCCVGALAIAGALHH--VDKDLL 201
           ++++   +N DGG+G              G S   Q    + AL   G        + + 
Sbjct: 520 LDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQ 579

Query: 202 GWWLCERQVKSGG 214
             +L E Q   GG
Sbjct: 580 --YLVETQRPDGG 590

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161
            D+   Y++  Q ++G + G +    +       +    IL R+D+  ++K   Y++  +
Sbjct: 15  LDRAVEYLLSCQKDEGYWWGPL--LSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQ 72

Query: 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAG 191
             DG +   PGG            AL   G
Sbjct: 73  REDGTWALYPGGPPDLDTTIEAYVALKYIG 102

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 49/205 (23%)

Query: 55  EDVISWILKCQDESGGFA--------------------GNIGHDPHVLY-TLSAVQVLAL 93
            D ++ +L  ++  GGFA                    G+I  D   +  T + +Q L  
Sbjct: 484 CDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKY 543

Query: 94  FDKV--------DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL--- 142
           F K               +   +    Q  DGS+ G  WG   T  ++  +   + +   
Sbjct: 544 FHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQT 602

Query: 143 --QRLDKINVDKAVEYIVSCKNLDGGFG----------CTPGGESHSGQIFCCVGALAIA 190
                    V +A ++++S +  DGG+G               +S        +  L   
Sbjct: 603 YRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAV 662

Query: 191 GALHH--VDKDLLGWWLCERQVKSG 213
                   ++ +    L E+Q+ +G
Sbjct: 663 RHPDIEAQERGVR--CLLEKQLPNG 685

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.96
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.96
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.89
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.88
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.82
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.81
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.76
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.73
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.72
2hr0_B	915	Complement C3 alpha' chain; complement component C	99.57
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	99.55
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.46
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	99.42
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.35
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	99.34
3prx_B	1642	Cobra venom factor; immune system, complement, imm	99.32
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.31
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	99.23
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.18
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	99.17
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.12
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.89
2hr0_B	915	Complement C3 alpha' chain; complement component C	98.82
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.76
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.68
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.47
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.41
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.31
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	98.26
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	98.15
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	98.14
3prx_B	1642	Cobra venom factor; immune system, complement, imm	97.6
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	96.27
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	95.95
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	95.86
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	95.51
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	95.18
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	94.98
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	94.73
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	94.59
3k11_A	445	Putative glycosyl hydrolase; structural genomics,	89.54

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=3.4e-56  Score=375.64  Aligned_cols=225  Identities=58%  Similarity=1.139  Sum_probs=214.5

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (227)
                      .+++++|++||+++.+...++.++..+++++|.+||++.+|.+|+..+..+++++++||+++|++||||++.++.++|+.
T Consensus        17 ~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~   96 (331)
T 3dss_B           17 TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLL   96 (331)
T ss_dssp             SCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHH
T ss_pred             hhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHH
Confidence            68999999999998655567778888999999999999999999987777999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~  162 (227)
                      .||+|+++|.+++..+.++++++++||+++|++||||.+.+++++|+++||||+.+|.++|.++.++++++++||++||+
T Consensus        97 ~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~  176 (331)
T 3dss_B           97 YTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN  176 (331)
T ss_dssp             HHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCc
Confidence            99999999999998888899999999999999999999988999999999999999999999888899999999999999


Q ss_pred             CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      +||||+.+|+.++|+.+|+||+++|.+++.++.++++++++||.++|+++|||++||||++|+||
T Consensus       177 ~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cy  241 (331)
T 3dss_B          177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCY  241 (331)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHH
T ss_pred             CCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchh
Confidence            99999999999999999999999999999988889999999999999999999999999999997

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=6.4e-53  Score=366.23  Aligned_cols=223  Identities=32%  Similarity=0.550  Sum_probs=208.1

Q ss_pred             cccHHHHHHHHHHc-ccCCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177            3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (227)
Q Consensus         3 ~~~~~~~~~yl~~~-q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (227)
                      .+++++|++||.++ |+.+|+|..+.  .+++|.+||++.+|.+|+.. +...++++++||+++|++||||++.+...+|
T Consensus        72 ~l~~~~hi~~l~~~lq~~~gg~~a~D--~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~  149 (437)
T 2h6f_B           72 VLQREKHFHYLKRGLRQLTDAYECLD--ASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH  149 (437)
T ss_dssp             CCCHHHHHHHHHHHTTEECGGGGGGT--TCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred             cccHHHHHHHHHHcCCCCCCCccccc--CCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence            57899999999999 89999998764  56789999999999999964 3346889999999999999999999888999


Q ss_pred             hHHHHHHHHHHHhcccC---CCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHH
Q 027177           81 VLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI  157 (227)
Q Consensus        81 ~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l  157 (227)
                      +..|++|+.+|.+++..   +.++++++++||+++|++||||++++++++|+++||+|+++|.++|..+.+.++++++||
T Consensus       150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L  229 (437)
T 2h6f_B          150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI  229 (437)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred             hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999999999999863   668899999999999999999999889999999999999999999987777889999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc-cCCCcCCCCCCCCCCCC
Q 027177          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       158 ~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~k~~D~cy  227 (227)
                      ++||++||||+.+|+.++|+.+|+|||++|.++|..+.++++++++||+++|. ++|||++||||++|+||
T Consensus       230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cY  300 (437)
T 2h6f_B          230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCY  300 (437)
T ss_dssp             HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTH
T ss_pred             HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHH
Confidence            99999999999999999999999999999999999888899999999999998 89999999999999998

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=4.7e-53  Score=368.27  Aligned_cols=223  Identities=25%  Similarity=0.432  Sum_probs=202.1

Q ss_pred             cccHHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCC--CCC
Q 027177            3 ELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNI--GHD   78 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~--~~~   78 (227)
                      .|++++|++||+++-. -+..|.  ..+.+++|.+||++.+|.+|+.. +...++++++||++||++||||++.+  ++.
T Consensus        60 ~L~~~~Hi~yl~~~L~~LP~~y~--~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~  137 (520)
T 3q7a_B           60 GLRKQEHTQFLASSFFQLPGKFV--SLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQI  137 (520)
T ss_dssp             CCCHHHHHHHHHHHHSCBCGGGG--GGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSC
T ss_pred             ccCHHHHHHHHHHHhhhCChhhh--hcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence            5899999999999853 334444  45799999999999999999953 44578899999999999999999999  899


Q ss_pred             CChHHHHHHHHHHHhcccC------CCCC--HHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccH
Q 027177           79 PHVLYTLSAVQVLALFDKV------DILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINV  150 (227)
Q Consensus        79 ~~~~~T~~al~~L~~l~~~------~~~~--~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~  150 (227)
                      +|+.+|++|+++|.+++..      +.++  ++++++||+++|++||+|.++.|++.|+++||+|+.+|.++|....+++
T Consensus       138 ~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v  217 (520)
T 3q7a_B          138 PHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELL  217 (520)
T ss_dssp             CCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHH
T ss_pred             CcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999864      3566  8899999999999999999988999999999999999999999777889


Q ss_pred             HHHHHHHHhccCCCCCcCC-----------------------CCCCCCchhhchHHHHHHHHhcCCC------CCCHHHH
Q 027177          151 DKAVEYIVSCKNLDGGFGC-----------------------TPGGESHSGQIFCCVGALAIAGALH------HVDKDLL  201 (227)
Q Consensus       151 ~~~~~~l~~~Q~~dGGf~~-----------------------~~~~~~~~~~T~~al~aL~~~g~~~------~~~~~~~  201 (227)
                      +++++||++||++||||+.                       .|+.|+|..+|||||++|.+++.++      .++.+++
T Consensus       218 ~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l  297 (520)
T 3q7a_B          218 HNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAA  297 (520)
T ss_dssp             TTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHH
T ss_pred             HHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHH
Confidence            9999999999999999999                       6789999999999999999999863      5789999


Q ss_pred             HHHHHccCc---cCCCcCCCCCCCCCCCC
Q 027177          202 GWWLCERQV---KSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       202 ~~wL~~~Q~---~~GGf~~~~~k~~D~cy  227 (227)
                      ++||.+||.   ++|||+|||||++|+||
T Consensus       298 ~~WL~~RQ~~~~e~GGF~GR~NKlvD~CY  326 (520)
T 3q7a_B          298 LRWTVLQQGEPIEGGGFRGRTNKLVDGCY  326 (520)
T ss_dssp             HHHHHHTBCCGGGTTCBBSSTTSCBCTTH
T ss_pred             HHHHHHhCCcccCCCcccCCCCCCCchhh
Confidence            999999996   56999999999999998

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=1.2e-52  Score=358.41  Aligned_cols=221  Identities=30%  Similarity=0.542  Sum_probs=201.0

Q ss_pred             cccHHHHHHHHHHcccC-CCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccC---------CCCCcc
Q 027177            3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD---------ESGGFA   72 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~---------~dGgf~   72 (227)
                      .+++++|++||+++.+. +.+|.  ..+++++|.+||+|.+|++|+..+.++++++++||+++|+         ++|||+
T Consensus        19 ~l~~~~H~~y~~~~l~~lp~~~~--~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~   96 (377)
T 1n4q_B           19 DFLRDRHVRFFQRCLQVLPERYS--SLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR   96 (377)
T ss_dssp             CCCHHHHHHHHHHHHHEECGGGG--GGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred             ccCHHHHHHHHHHHhhcCCcccc--ccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence            47899999999998764 44544  4579999999999999999998656679999999999999         689999


Q ss_pred             CCCCC-----------------CCChHHHHHHHHHHHhccc-CCCCCHHHHHHHHHhccCCCCCcccC-CCCCCCccchh
Q 027177           73 GNIGH-----------------DPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSY  133 (227)
Q Consensus        73 ~~~~~-----------------~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGg~~~~-~~~~~d~~~t~  133 (227)
                      ++++.                 .+|+.+|++|+++|.+++. .+.++++++++||+++|++||+|.+. .+++.|+++||
T Consensus        97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY  176 (377)
T 1n4q_B           97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY  176 (377)
T ss_dssp             SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHH
T ss_pred             CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHH
Confidence            88753                 4899999999999999974 57789999999999999999999986 68999999999


Q ss_pred             HHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCC----CHHHHHHHHHccC
Q 027177          134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ  209 (227)
Q Consensus       134 ~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~----~~~~~~~wL~~~Q  209 (227)
                      +|+++|.++|....++++++++||++||++||||+..|+.++|+.+||||+++|.+++.++..    +++++++||.++|
T Consensus       177 ~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ  256 (377)
T 1n4q_B          177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ  256 (377)
T ss_dssp             HHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC
Confidence            999999999987788999999999999999999999999999999999999999999987543    6899999999999


Q ss_pred             ccCCCcCCCCCCCCCCCC
Q 027177          210 VKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       210 ~~~GGf~~~~~k~~D~cy  227 (227)
                        +|||+|||||++|+||
T Consensus       257 --~gGf~GR~nK~~D~CY  272 (377)
T 1n4q_B          257 --QNGYHGRPNKPVDTCY  272 (377)
T ss_dssp             --SSSBCSSTTSCCCTTH
T ss_pred             --CCCcCCCCCcchhHHH
Confidence              9999999999999998

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=3.2e-51  Score=348.95  Aligned_cols=224  Identities=25%  Similarity=0.377  Sum_probs=198.1

Q ss_pred             CCcccHHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhccCCC----CCccC
Q 027177            1 MGELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDES----GGFAG   73 (227)
Q Consensus         1 ~~~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q~~d----Ggf~~   73 (227)
                      |..+++++|++|++++-+ -+..|.  ..+++++|.+||+|.+|++|+..  .+.++++.++||.+||.++    |||++
T Consensus         1 ~~~l~~~kHiky~~~~L~~Lp~~~~--s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g   78 (390)
T 3dra_B            1 MNQLLINKHEKFFNRCLIGLPSTAQ--SEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRS   78 (390)
T ss_dssp             -CCCCHHHHHHHHHHHHHCCCGGGG--GGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECS
T ss_pred             CccccHHHHHHHHHHHHHhCCcchh--hcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCC
Confidence            789999999999998743 334444  44799999999999999999987  3456889999999998653    89998


Q ss_pred             CC-----C---CCCChHHHHHHHHHHHhcccC--CCCCHHHHHHHHHhccC---C-CCCcccCC-----------CCCCC
Q 027177           74 NI-----G---HDPHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQN---E-DGSFSGDI-----------WGEVD  128 (227)
Q Consensus        74 ~~-----~---~~~~~~~T~~al~~L~~l~~~--~~~~~~~~~~~l~~~Q~---~-dGg~~~~~-----------~~~~d  128 (227)
                      .+     +   +.+|+.+||+|+.+|.+++..  +.+|++++++||.++|+   + ||+|....           +++.|
T Consensus        79 ~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D  158 (390)
T 3dra_B           79 THYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPD  158 (390)
T ss_dssp             SGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCC
T ss_pred             CccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcch
Confidence            85     5   579999999999999999874  77899999999999999   7 89999543           67999


Q ss_pred             ccchhHHHHHHHHhhccC-------------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC
Q 027177          129 TRFSYIAICCLSILQRLD-------------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH  195 (227)
Q Consensus       129 ~~~t~~a~~~L~~~g~~~-------------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~  195 (227)
                      ++++|||++++.+++.+.             .++++++++||++||+.||||+..|+.|+|..+|||||++|.+++++ .
T Consensus       159 ~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~  237 (390)
T 3dra_B          159 LRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-L  237 (390)
T ss_dssp             HHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-G
T ss_pred             HHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-c
Confidence            999999999999999876             67899999999999999999999999999999999999999999987 3


Q ss_pred             CCHHHHHHHHHccCc----------------------------cCCCcCCCCCCCCCCCC
Q 027177          196 VDKDLLGWWLCERQV----------------------------KSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       196 ~~~~~~~~wL~~~Q~----------------------------~~GGf~~~~~k~~D~cy  227 (227)
                      .+++++++||.+||.                            ++|||+|||||++|+||
T Consensus       238 ~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CY  297 (390)
T 3dra_B          238 EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCY  297 (390)
T ss_dssp             GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHH
T ss_pred             ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhH
Confidence            678999999999997                            57999999999999998

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=1.7e-48  Score=328.67  Aligned_cols=224  Identities=21%  Similarity=0.351  Sum_probs=211.6

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (227)
                      +++++++++||+++|++||+|...+++.+++..||+++.+|.+++..+.++++++++||+++|++||||++.+..++|+.
T Consensus        65 ~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~  144 (331)
T 3dss_B           65 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR  144 (331)
T ss_dssp             GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred             hhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchH
Confidence            46899999999999999999998888888999999999999999876667899999999999999999999877789999


Q ss_pred             HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~  162 (227)
                      .||+|+.+|.+++..+..+++++++||+++|++||||++++..++|..+|||++++|.+++..+.++++++++||.++|+
T Consensus       145 ~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~  224 (331)
T 3dss_B          145 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL  224 (331)
T ss_dssp             HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCC
Confidence            99999999999998877889999999999999999999999999999999999999999999878889999999999999


Q ss_pred             CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccC-CCcCCCCCCCCCCC
Q 027177          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPDVV  226 (227)
Q Consensus       163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~-GGf~~~~~k~~D~c  226 (227)
                      +||||+.+|++++|+.+|||++++|.++|+.+.++++++++||+++|+.+ |||+.+|++.+|.+
T Consensus       225 ~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~  289 (331)
T 3dss_B          225 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPF  289 (331)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHH
T ss_pred             CCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHH
Confidence            99999999999999999999999999999887789999999999999987 99999999999953

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=4.4e-43  Score=304.53  Aligned_cols=222  Identities=19%  Similarity=0.290  Sum_probs=203.3

Q ss_pred             ccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (227)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (227)
                      .+++++++||.++|++||||..+..+.+.+..||.+|.+|.+++..   +.++++++++||+++|++||||+..++.+++
T Consensus       121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d  200 (437)
T 2h6f_B          121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVD  200 (437)
T ss_dssp             HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBS
T ss_pred             HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCcc
Confidence            3578999999999999999988777788899999999999999874   4568999999999999999999988777899


Q ss_pred             hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (227)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~  160 (227)
                      +..||+|+.+|.+++..+...++++++||+++|++||||+..|..+++..+||||+++|.++|..+.++++++++||+++
T Consensus       201 ~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~r  280 (437)
T 2h6f_B          201 VRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSR  280 (437)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhc
Confidence            99999999999999876666688999999999999999999999999999999999999999998888999999999999


Q ss_pred             cC-CCCCcCCCCCCCCchhhchHHHHHHHHhcCC---------C----CCCHHHHHHHHHc-cCccCCCcCCCCCCCCCC
Q 027177          161 KN-LDGGFGCTPGGESHSGQIFCCVGALAIAGAL---------H----HVDKDLLGWWLCE-RQVKSGGLNGRPEKLPDV  225 (227)
Q Consensus       161 Q~-~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~---------~----~~~~~~~~~wL~~-~Q~~~GGf~~~~~k~~D~  225 (227)
                      |. ++|||..+|++.+|+++|||++++|.+++..         +    .++.+++.+||+. +|+++|||+.+|++.+|.
T Consensus       281 Q~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~  360 (437)
T 2h6f_B          281 QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF  360 (437)
T ss_dssp             BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred             CCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCH
Confidence            98 7999999999999999999999999998753         1    3678999999998 799999999999999994

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=9.8e-41  Score=284.88  Aligned_cols=221  Identities=18%  Similarity=0.280  Sum_probs=200.7

Q ss_pred             cccHHHHHHHHHHccc---------CCCCcchhhcc-----------------cchHHHHHHHHHHHHHhCCC-CCcCHH
Q 027177            3 ELAADKHVKYIISVEK---------KKDSFESVVME-----------------HLRLNGAYWGLTTLDILGKL-DAVDEE   55 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~---------~dg~~~~~~~~-----------------~~~~~~~y~~l~~l~ll~~~-~~~~~~   55 (227)
                      .++++++++||.++|+         ++|+|+.+...                 .+.+..||.+|.+|.+++.. +.++++
T Consensus        66 ~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~  145 (377)
T 1n4q_B           66 VVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKE  145 (377)
T ss_dssp             GSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHH
T ss_pred             ccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHH
Confidence            4568999999999999         68999876532                 46789999999999999863 457899


Q ss_pred             HHHHHHHhccCCCCCccCC-CCCCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177           56 DVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI  134 (227)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~  134 (227)
                      ++++||+++|++||+|.+. ...+.++..||+|+.++.+++..+.++++++++||+++|++||||+..|..+++..+|||
T Consensus       146 ~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~c  225 (377)
T 1n4q_B          146 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC  225 (377)
T ss_dssp             HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHH
Confidence            9999999999999999985 456889999999999999999877788999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCcc----cHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCc
Q 027177          135 AICCLSILQRLDKI----NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV  210 (227)
Q Consensus       135 a~~~L~~~g~~~~~----~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~  210 (227)
                      |+++|.+++..+..    +++++++||.+.|  +|||..+|++.+|++++||++++|.+++..+-++.+++.+||+++|+
T Consensus       226 AlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~  303 (377)
T 1n4q_B          226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD  303 (377)
T ss_dssp             HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcC
Confidence            99999999975433    7899999999999  89999999999999999999999999998766889999999999999


Q ss_pred             c-CCCcCCCCCCCCCC
Q 027177          211 K-SGGLNGRPEKLPDV  225 (227)
Q Consensus       211 ~-~GGf~~~~~k~~D~  225 (227)
                      + +|||+.+|++.||.
T Consensus       304 ~~~GGf~~~p~~~~D~  319 (377)
T 1n4q_B          304 RLVGGFAKWPDSHPDA  319 (377)
T ss_dssp             TTTCSBCSSTTSCCBH
T ss_pred             CCCCCcCCCCCCCCCH
Confidence            8 99999999999994

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=9.7e-39  Score=272.17  Aligned_cols=221  Identities=23%  Similarity=0.323  Sum_probs=196.8

Q ss_pred             ccHHHHHHHHHHcccCC----CCcchhh-----c---ccchHHHHHHHHHHHHHhCCC--CCcCHHHHHHHHHhccC---
Q 027177            4 LAADKHVKYIISVEKKK----DSFESVV-----M---EHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD---   66 (227)
Q Consensus         4 ~~~~~~~~yl~~~q~~d----g~~~~~~-----~---~~~~~~~~y~~l~~l~ll~~~--~~~~~~~~i~~l~~~q~---   66 (227)
                      .++++.++||.++|.++    |+|+..+     +   +.+.+..||+||.+|.+++..  +.++++++++||.++|+   
T Consensus        53 ~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~  132 (390)
T 3dra_B           53 QELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDG  132 (390)
T ss_dssp             HHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSS
T ss_pred             HHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCC
Confidence            35788999999998753    8887663     3   568899999999999999985  55789999999999998   


Q ss_pred             C-CCCccCCC-----------CCCCChHHHHHHHHHHHhcccCC-------------CCCHHHHHHHHHhccCCCCCccc
Q 027177           67 E-SGGFAGNI-----------GHDPHVLYTLSAVQVLALFDKVD-------------ILDADKVSNYIVGLQNEDGSFSG  121 (227)
Q Consensus        67 ~-dGgf~~~~-----------~~~~~~~~T~~al~~L~~l~~~~-------------~~~~~~~~~~l~~~Q~~dGg~~~  121 (227)
                      + ||+|...+           +.+.++..||+|+.++.+++...             .++++++++||++||+.||||+.
T Consensus       133 ~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~  212 (390)
T 3dra_B          133 INKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSS  212 (390)
T ss_dssp             TTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCS
T ss_pred             CCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCC
Confidence            6 89999553           46889999999999999998765             67899999999999999999999


Q ss_pred             CCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC----------------------------CCCCcCCCCCC
Q 027177          122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN----------------------------LDGGFGCTPGG  173 (227)
Q Consensus       122 ~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~----------------------------~dGGf~~~~~~  173 (227)
                      .|..+++..+||||+++|.+++.+ ..+++++++||.++|.                            ++|||..+|++
T Consensus       213 ~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nK  291 (390)
T 3dra_B          213 TIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENK  291 (390)
T ss_dssp             STTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTC
T ss_pred             CCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCC
Confidence            999999999999999999999986 3678999999999997                            57999999999


Q ss_pred             CCchhhchHHHHHHHHhcC--CCCCCHHHHHHHHHcc-Ccc-CCCcCCCCCCCCCC
Q 027177          174 ESHSGQIFCCVGALAIAGA--LHHVDKDLLGWWLCER-QVK-SGGLNGRPEKLPDV  225 (227)
Q Consensus       174 ~~~~~~T~~al~aL~~~g~--~~~~~~~~~~~wL~~~-Q~~-~GGf~~~~~k~~D~  225 (227)
                      .+|+.++||++++|.+++.  .+.++.+++.+||+.+ |++ .|||+.+|+++||.
T Consensus       292 l~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~  347 (390)
T 3dra_B          292 LSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDP  347 (390)
T ss_dssp             CBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCH
T ss_pred             ccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCch
Confidence            9999999999999999994  4567899999999997 665 99999999999994

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=2.2e-39  Score=282.44  Aligned_cols=222  Identities=19%  Similarity=0.272  Sum_probs=198.4

Q ss_pred             ccHHHHHHHHHHcccCCCCcchhh--cccchHHHHHHHHHHHHHhCCCC------CcC--HHHHHHHHHhccCCCCCccC
Q 027177            4 LAADKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLD------AVD--EEDVISWILKCQDESGGFAG   73 (227)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~~l~~l~ll~~~~------~~~--~~~~i~~l~~~q~~dGgf~~   73 (227)
                      .+++++++||.++|+++|||+..+  .+.+.+..||+||.+|.+++...      .++  ++++++||.++|++||+|.+
T Consensus       109 ~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g  188 (520)
T 3q7a_B          109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVV  188 (520)
T ss_dssp             HHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence            467899999999999999999887  78889999999999999998742      245  88999999999999999998


Q ss_pred             CCCCCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCccc-----------------------CCCCCCCcc
Q 027177           74 NIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG-----------------------DIWGEVDTR  130 (227)
Q Consensus        74 ~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~-----------------------~~~~~~d~~  130 (227)
                      ..+.+.++..||+|+.+|.+++..+..+++++++||+++|+.||||+.                       .|..+++..
T Consensus       189 ~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgG  268 (520)
T 3q7a_B          189 CEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGG  268 (520)
T ss_dssp             STTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHH
T ss_pred             CCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchh
Confidence            766688999999999999999886666789999999999999999999                       568899999


Q ss_pred             chhHHHHHHHHhhcc------CcccHHHHHHHHHhccC---CCCCcCCCCCCCCchhhchHHHHHHHHhcCC--------
Q 027177          131 FSYIAICCLSILQRL------DKINVDKAVEYIVSCKN---LDGGFGCTPGGESHSGQIFCCVGALAIAGAL--------  193 (227)
Q Consensus       131 ~t~~a~~~L~~~g~~------~~~~~~~~~~~l~~~Q~---~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~--------  193 (227)
                      +|||++++|.+++.+      ..++.+++++||..+|.   ++|||..++++.+|++|+||..++|.+++..        
T Consensus       269 yTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~  348 (520)
T 3q7a_B          269 YTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRK  348 (520)
T ss_dssp             HHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccc
Confidence            999999999999985      35789999999999996   5799999999999999999999999988753        


Q ss_pred             ------------------------CCCCHHHHHHHHH-ccCccC---CCcCCCCCCCCCC
Q 027177          194 ------------------------HHVDKDLLGWWLC-ERQVKS---GGLNGRPEKLPDV  225 (227)
Q Consensus       194 ------------------------~~~~~~~~~~wL~-~~Q~~~---GGf~~~~~k~~D~  225 (227)
                                              ..++.+++.+||+ .+|.+.   |||+.+|+|.||.
T Consensus       349 ~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~  408 (520)
T 3q7a_B          349 VKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQ  408 (520)
T ss_dssp             C---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCH
T ss_pred             cccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcch
Confidence                                    1257889999999 589887   9999999999995

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.96  E-value=1.5e-28  Score=223.64  Aligned_cols=219  Identities=19%  Similarity=0.211  Sum_probs=167.3

Q ss_pred             cHHHHHHHHHHcccCC-CCc------------chhh--cccchHHHHHHHHHHHHHhCCCC----CcCHHHHHHHHHhcc
Q 027177            5 AADKHVKYIISVEKKK-DSF------------ESVV--MEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQ   65 (227)
Q Consensus         5 ~~~~~~~yl~~~q~~d-g~~------------~~~~--~~~~~~~~~y~~l~~l~ll~~~~----~~~~~~~i~~l~~~q   65 (227)
                      .++++++||++.|..+ |+|            .+..  ...++++.|.+++.+|..++...    ...++++++||+++|
T Consensus       332 ~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q  411 (631)
T 2sqc_A          332 RLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQ  411 (631)
T ss_dssp             HHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhc
Confidence            3578999999998642 433            2111  11256899999999999988742    225779999999999


Q ss_pred             CCCCCccCCCC-------------------CCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCC
Q 027177           66 DESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWG  125 (227)
Q Consensus        66 ~~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~  125 (227)
                      ++||||+.+..                   ..+++..|..++.+|..++... ...++++++||.+.|++||||.+. + 
T Consensus       412 ~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~-w-  489 (631)
T 2sqc_A          412 SSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGR-W-  489 (631)
T ss_dssp             CTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCS-S-
T ss_pred             CCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCC-C-
Confidence            99999976421                   1267889999999999886422 223789999999999999999652 2 


Q ss_pred             CCCccchhHHH---HHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCCC----------CCCCchhhchHHHHHHHHhc
Q 027177          126 EVDTRFSYIAI---CCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAG  191 (227)
Q Consensus       126 ~~d~~~t~~a~---~~L~~~g~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~~~~~~T~~al~aL~~~g  191 (227)
                        +.+++|++.   .+|..+|.. ..+.++++++||+++|++||||+..+          ..+++++.|+|||.+|..+|
T Consensus       490 --g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag  567 (631)
T 2sqc_A          490 --GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGG  567 (631)
T ss_dssp             --BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTT
T ss_pred             --CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence              345666554   445555542 24678999999999999999998653          34689999999999999999


Q ss_pred             CCCCCCHHHHHHHHHccCccCCCcCCCCCC---CCCCCC
Q 027177          192 ALHHVDKDLLGWWLCERQVKSGGLNGRPEK---LPDVVM  227 (227)
Q Consensus       192 ~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k---~~D~cy  227 (227)
                      ..+...++++++||.++|+++|||......   .+..||
T Consensus       568 ~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~y  606 (631)
T 2sqc_A          568 RAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFY  606 (631)
T ss_dssp             CSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEE
T ss_pred             CCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccce
Confidence            875556899999999999999999987753   667776

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.96  E-value=6.2e-29  Score=228.78  Aligned_cols=221  Identities=17%  Similarity=0.201  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHcccCC--------------CCcchhhcc--cchHHHHHHHHHHHHHhCCC--------CCcCHHHHHHHH
Q 027177            6 ADKHVKYIISVEKKK--------------DSFESVVME--HLRLNGAYWGLTTLDILGKL--------DAVDEEDVISWI   61 (227)
Q Consensus         6 ~~~~~~yl~~~q~~d--------------g~~~~~~~~--~~~~~~~y~~l~~l~ll~~~--------~~~~~~~~i~~l   61 (227)
                      .+++++||+++|.++              |+|.+...+  ..+...|.+++.+|..+...        ....++++++||
T Consensus       411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL  490 (732)
T 1w6k_A          411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL  490 (732)
T ss_dssp             HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence            468999999998765              888765422  34677888999999887431        123568999999


Q ss_pred             HhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccC------C--CCCHHHHHHHHHhc
Q 027177           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV------D--ILDADKVSNYIVGL  112 (227)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~------~--~~~~~~~~~~l~~~  112 (227)
                      +++|++||||+.+..                     ..+++..|.+++.+|..++..      +  ...++++++||++.
T Consensus       491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~  570 (732)
T 1w6k_A          491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ  570 (732)
T ss_dssp             HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence            999999999974321                     234678999999999887542      0  12378999999999


Q ss_pred             cCCCCCcccCCCCCCCccchhHHHHHHHHhhccCc-----ccHHHHHHHHHhccCCCCCcCCC----------CCCCCch
Q 027177          113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK-----INVDKAVEYIVSCKNLDGGFGCT----------PGGESHS  177 (227)
Q Consensus       113 Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~-----~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~~~~  177 (227)
                      |++||+|.+ .++..+...|++++.+|.++|....     +.++++++||+++|++||||+..          ++..+++
T Consensus       571 Q~~DGsW~g-~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v  649 (732)
T 1w6k_A          571 QRADGSWEG-SWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI  649 (732)
T ss_dssp             SCTTSCCCC-SSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred             cCCCCCccC-cCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence            999999987 4455555567778888888887432     46899999999999999999974          2456899


Q ss_pred             hhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCC--CCCCCCCC
Q 027177          178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVVM  227 (227)
Q Consensus       178 ~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~k~~D~cy  227 (227)
                      ..|+||+.+|..++..+...++++++||+++|+++|||.-.+  +..+.+||
T Consensus       650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~  701 (732)
T 1w6k_A          650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA  701 (732)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhh
Confidence            999999999999987755668999999999999999999655  33456664

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.89  E-value=2.8e-22  Score=182.46  Aligned_cols=184  Identities=16%  Similarity=0.138  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHcccCCCCcchhhc-------------------ccchHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHhcc
Q 027177            6 ADKHVKYIISVEKKKDSFESVVM-------------------EHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQ   65 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~-------------------~~~~~~~~y~~l~~l~ll~~~~-~~~~~~~i~~l~~~q   65 (227)
                      ++++++||.++|++||+|..+..                   +++++..|.+++.+|..++... ...++++++||+++|
T Consensus       400 l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q  479 (631)
T 2sqc_A          400 MTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQ  479 (631)
T ss_dssp             HHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhc
Confidence            56899999999999999965421                   1245667889999999887642 346889999999999


Q ss_pred             CCCCCccCCCCCCCChHHHHHHHHHHHhcccC-CCCCHHHHHHHHHhccCCCCCcccCC----------CCCCCccchhH
Q 027177           66 DESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDI----------WGEVDTRFSYI  134 (227)
Q Consensus        66 ~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGg~~~~~----------~~~~d~~~t~~  134 (227)
                      ++||||.+.++ ..++..|..++.+|..++.. ....++++++||+++|++||||+..+          ++.+++..|++
T Consensus       480 ~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~  558 (631)
T 2sqc_A          480 KPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAW  558 (631)
T ss_dssp             CTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHH
T ss_pred             CCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHH
Confidence            99999976554 35678888999999887642 23347899999999999999997532          34678888999


Q ss_pred             HHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCC----------CchhhchHHHHHHHHh
Q 027177          135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGE----------SHSGQIFCCVGALAIA  190 (227)
Q Consensus       135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~----------~~~~~T~~al~aL~~~  190 (227)
                      ++.+|...|......++++++||+++|++||||+......          -+.+.+.++|.||...
T Consensus       559 ALlaL~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y  624 (631)
T 2sqc_A          559 ALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRY  624 (631)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHHHH
Confidence            9999999998766778999999999999999999875431          2345567778887654

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.88  E-value=7e-22  Score=181.97  Aligned_cols=211  Identities=15%  Similarity=0.132  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHc--ccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC----CcCHHHHHHHHHhccCCC-----------
Q 027177            6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDES-----------   68 (227)
Q Consensus         6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~----~~~~~~~i~~l~~~q~~d-----------   68 (227)
                      ..+|++.|.+.  ..+||.+. ..-..+.+|.|.+++.+|...+...    ...++++++||+++|+.+           
T Consensus       358 ~~~~l~~l~~~l~~~~dG~~~-q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~  436 (732)
T 1w6k_A          358 FQEHVSRIPDYLWMGLDGMKM-QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQ  436 (732)
T ss_dssp             HHHHHHTSGGGEEEETTEEEE-CSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCC
T ss_pred             HHHHHHHHHHhheeCCCCcee-CCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccC
Confidence            44666666654  45676442 1111256888988888888877532    124679999999999766           


Q ss_pred             ---CCccCCCC--CCCChHHHHHHHHHHHhcccCC-----CCC---HHHHHHHHHhccCCCCCcccCCC-----------
Q 027177           69 ---GGFAGNIG--HDPHVLYTLSAVQVLALFDKVD-----ILD---ADKVSNYIVGLQNEDGSFSGDIW-----------  124 (227)
Q Consensus        69 ---Ggf~~~~~--~~~~~~~T~~al~~L~~l~~~~-----~~~---~~~~~~~l~~~Q~~dGg~~~~~~-----------  124 (227)
                         |||+....  ..+++..|..++.+|..+....     .++   ++++++||.++|++||||.....           
T Consensus       437 ~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~  516 (732)
T 1w6k_A          437 MRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLN  516 (732)
T ss_dssp             CCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGC
T ss_pred             CCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCc
Confidence               88876543  3578999999999998875321     222   58899999999999999963211           


Q ss_pred             -----CCC--C---ccchhHHHHHHHHhhcc--------CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHH
Q 027177          125 -----GEV--D---TRFSYIAICCLSILQRL--------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA  186 (227)
Q Consensus       125 -----~~~--d---~~~t~~a~~~L~~~g~~--------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~a  186 (227)
                           +..  |   +..|..++.+|..++..        ....++++++||+++|++||||...++ ..+.+.|++++.+
T Consensus       517 ~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~A  595 (732)
T 1w6k_A          517 PSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEA  595 (732)
T ss_dssp             CCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHH
T ss_pred             chhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHH
Confidence                 111  1   22344566667666542        134689999999999999999987765 3567889999999


Q ss_pred             HHHhcCCCC-----CCHHHHHHHHHccCccCCCcCCC
Q 027177          187 LAIAGALHH-----VDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       187 L~~~g~~~~-----~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      |..+|....     ..++++++||+++|++||||+..
T Consensus       596 L~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~  632 (732)
T 1w6k_A          596 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGED  632 (732)
T ss_dssp             HHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBC
T ss_pred             HHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCC
Confidence            999997532     35899999999999999999864

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.82  E-value=1.8e-19  Score=148.52  Aligned_cols=163  Identities=17%  Similarity=0.155  Sum_probs=123.5

Q ss_pred             CHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCCC---
Q 027177           53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG---  125 (227)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~~---  125 (227)
                      .+++++++++++|++||||+.+++.+++...|.+++.+|..+.....++   ++++++||.+ .|++||+|.+...-   
T Consensus        39 ~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~  118 (277)
T 1qqf_A           39 LIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQ  118 (277)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCG
T ss_pred             HHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccch
Confidence            3556777799999999999999988999999999999999987654444   4789999996 99999999864210   


Q ss_pred             ----------CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCC-------------------------
Q 027177          126 ----------EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL-------------------------  163 (227)
Q Consensus       126 ----------~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~-------------------------  163 (227)
                                ++++..|..++.+|...+..       ..+.++++++||.++++.                         
T Consensus       119 ~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l  198 (277)
T 1qqf_A          119 EMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYL  198 (277)
T ss_dssp             GGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHH
T ss_pred             hhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHH
Confidence                      11233455666666655431       134688999999998764                         


Q ss_pred             --------CCCcCCCCCCC-CchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177          164 --------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       164 --------dGGf~~~~~~~-~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                              +|+|...++.. .+++.|+|+|.+|...+..  ..+.++++||+++|+++|||..
T Consensus       199 ~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~~~~~~v~wL~~qq~~~Ggw~s  259 (277)
T 1qqf_A          199 TKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF--DSVPPVVRWLNDERYYGGGYGS  259 (277)
T ss_dssp             HHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT--TSHHHHHHHHHHCCCCTTSTTC
T ss_pred             HHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh--hhHHHHHHHHHHccCCCCCeec
Confidence                    44444344321 2677899999999888754  4689999999999999999975

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.81  E-value=4.6e-19  Score=148.43  Aligned_cols=163  Identities=18%  Similarity=0.152  Sum_probs=123.2

Q ss_pred             CHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCCC---
Q 027177           53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG---  125 (227)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~~---  125 (227)
                      .+++++++++++|++||||+.+++.+++...|.+++.+|..+.....++   ++++++||.+ .|++||+|.+...-   
T Consensus        55 ~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~  134 (310)
T 2wy7_A           55 LIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQ  134 (310)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCG
T ss_pred             HHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCH
Confidence            3567778899999999999999988899999999999999987654444   4789999996 99999999864210   


Q ss_pred             ----------CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCC-------------------------
Q 027177          126 ----------EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL-------------------------  163 (227)
Q Consensus       126 ----------~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~-------------------------  163 (227)
                                ++++..|..++.+|...+..       ..+.++++++||.++|+.                         
T Consensus       135 ~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l  214 (310)
T 2wy7_A          135 EMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLL  214 (310)
T ss_dssp             GGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             hhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHH
Confidence                      12233455666666655431       134688999999998763                         


Q ss_pred             --------CCCcCCCCCCC-CchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177          164 --------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       164 --------dGGf~~~~~~~-~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                              +|+|...++.. .+++.|+|||.+|...+..  ..+.++++||+++|+.+|||..
T Consensus       215 ~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~~~~~~v~wL~~qq~~~Ggw~s  275 (310)
T 2wy7_A          215 NKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS  275 (310)
T ss_dssp             HHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTHHHHHHHHHHTTCCCCSTTC
T ss_pred             HHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHHccCCCCCeec
Confidence                    34443333321 2678899999999988754  5689999999999999999964

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.76  E-value=8e-18  Score=138.71  Aligned_cols=172  Identities=13%  Similarity=0.116  Sum_probs=124.4

Q ss_pred             HHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHh-ccCCCCCccCCCCC--------
Q 027177           10 VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH--------   77 (227)
Q Consensus        10 ~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~--------   77 (227)
                      ++.+.+.|++||||..+..++++.|.|-+++.+|..+....   +..++++++||.+ .|++||+|....+.        
T Consensus        44 ~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~  123 (277)
T 1qqf_A           44 YTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGG  123 (277)
T ss_dssp             HHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGG
T ss_pred             HHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCC
Confidence            33377789999999999888889999999999999998642   2356799999996 99999999765431        


Q ss_pred             -----CCChHHHHHHHHHHHhcccC-----C--CCCHHHHHHHHHhccCC------------------------------
Q 027177           78 -----DPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNE------------------------------  115 (227)
Q Consensus        78 -----~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~Q~~------------------------------  115 (227)
                           ++++..|++++.+|...+..     .  ...++++++||.++++.                              
T Consensus       124 ~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~  203 (277)
T 1qqf_A          124 FRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLN  203 (277)
T ss_dssp             GGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred             CCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                 23466688888888765321     1  12367899999998764                              


Q ss_pred             ---CCCcccCCCC-CCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHh
Q 027177          116 ---DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (227)
Q Consensus       116 ---dGg~~~~~~~-~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~  190 (227)
                         +|.|...+.. ..++..|.+++.+|...+.  ...++++++||.+.|+++|||..       +..|..||.||...
T Consensus       204 ~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~y  273 (277)
T 1qqf_A          204 TAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQATFMVFQALAQY  273 (277)
T ss_dssp             HSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HHHHHHHHHHHHHH
T ss_pred             hccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------chHHHHHHHHHHHH
Confidence               3333222211 0144556667766666665  35789999999999999999984       35688888888653

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.73  E-value=3.5e-17  Score=136.96  Aligned_cols=175  Identities=14%  Similarity=0.119  Sum_probs=125.7

Q ss_pred             HHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHh-ccCCCCCccCCCCC------
Q 027177            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------   77 (227)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------   77 (227)
                      ++++.+.+.|++||||..+...+.+.|.|-+++.+|..+....   +..++++++||.+ .|++||+|....+.      
T Consensus        58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~  137 (310)
T 2wy7_A           58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI  137 (310)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhc
Confidence            3344477789999999999888889999999999999998642   2356799999996 99999999765431      


Q ss_pred             -------CCChHHHHHHHHHHHhcccC-----C--CCCHHHHHHHHHhccCC----------------------------
Q 027177           78 -------DPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNE----------------------------  115 (227)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~Q~~----------------------------  115 (227)
                             ++.+..|++++.+|...+..     .  ...++++++||.++|+.                            
T Consensus       138 g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l  217 (310)
T 2wy7_A          138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF  217 (310)
T ss_dssp             GGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence                   23466688888888765321     1  12367899999998764                            


Q ss_pred             -----CCCcccCCCC-CCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHH
Q 027177          116 -----DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (227)
Q Consensus       116 -----dGg~~~~~~~-~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~  189 (227)
                           +|.|...+.. ..++..|.+++.+|...+.  ...++++++||.+.|+++|||..       ...|..||.||..
T Consensus       218 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~  288 (310)
T 2wy7_A          218 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ  288 (310)
T ss_dssp             HHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHHHH
Confidence                 2333221111 0144566667777666665  35789999999999999999974       3568888888876


Q ss_pred             hc
Q 027177          190 AG  191 (227)
Q Consensus       190 ~g  191 (227)
                      ..
T Consensus       289 y~  290 (310)
T 2wy7_A          289 YQ  290 (310)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.72  E-value=8.2e-17  Score=137.67  Aligned_cols=199  Identities=15%  Similarity=0.133  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCC-----
Q 027177            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH-----   77 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~-----   77 (227)
                      +++++++|.+.|++||||+.|..+..+.|.|.+++.+|..++..   ++..++++++||++.|++||+|......     
T Consensus        93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~  172 (367)
T 1hzf_A           93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM  172 (367)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence            45677888889999999999987777889999999999988753   2236789999999999999999865321     


Q ss_pred             -------CCChHHHHHHHHHHHhcccCC------------CCCHHHHHHHHHhc--cCCCCCcccCCCCCCCccchhHHH
Q 027177           78 -------DPHVLYTLSAVQVLALFDKVD------------ILDADKVSNYIVGL--QNEDGSFSGDIWGEVDTRFSYIAI  136 (227)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~~~------------~~~~~~~~~~l~~~--Q~~dGg~~~~~~~~~d~~~t~~a~  136 (227)
                             ++.+..|.+++.+|...+...            ...++++++||++.  ++.           .++.....+.
T Consensus       173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~-----------~~~y~~Al~a  241 (367)
T 1hzf_A          173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGL-----------LGAHAAAITA  241 (367)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------CCHHHHHHHH
T ss_pred             cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhccc-----------CCHHHHHHHH
Confidence                   234678888888887654311            11367899999876  321           1111122233


Q ss_pred             HHHHHhhccCcccHHHHHHHHHhccCCCCC---cCCCCC---------------------CC-CchhhchHHHHHHHHhc
Q 027177          137 CCLSILQRLDKINVDKAVEYIVSCKNLDGG---FGCTPG---------------------GE-SHSGQIFCCVGALAIAG  191 (227)
Q Consensus       137 ~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGG---f~~~~~---------------------~~-~~~~~T~~al~aL~~~g  191 (227)
                      .+|.+.|.... ..+.+.+-|.+.-..+|+   |.....                     .. .+++.|+|+|.+|...+
T Consensus       242 yAL~l~~~~~~-~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~  320 (367)
T 1hzf_A          242 YALTLTKAPAD-LRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHE  320 (367)
T ss_dssp             HHHHHTTCCHH-HHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCcHH-HHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhcc
Confidence            45666665321 123455556554333333   654210                     11 26789999999998764


Q ss_pred             CCCCCCHHHHHHHHHccCccCCCcCC
Q 027177          192 ALHHVDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       192 ~~~~~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                      . +...+.++++||.++|+.+|||.-
T Consensus       321 ~-~~~~~~~iv~WL~~qrn~~Ggw~s  345 (367)
T 1hzf_A          321 G-KAEMADQASAWLTRQGSFQGGFRS  345 (367)
T ss_dssp             C-SSHHHHHHHHHHHHHTTSTTCSCS
T ss_pred             C-chhhhHHHHHHHHhCcCCCCCccc
Confidence            2 234478999999999999999973

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=99.57  E-value=3.8e-14  Score=134.00  Aligned_cols=190  Identities=13%  Similarity=0.106  Sum_probs=132.1

Q ss_pred             HHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHh-ccCCCCCccCCCCC-------
Q 027177            9 HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH-------   77 (227)
Q Consensus         9 ~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~-------   77 (227)
                      +++.+.+.|++||||..|...+.+.|.|-|++..|..+....   +..++++++||.+ .|++||+|......       
T Consensus       304 g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~g  383 (915)
T 2hr0_B          304 GYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIG  383 (915)
T ss_dssp             HHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCC
T ss_pred             HHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcC
Confidence            444466679999999999888889999999999999887542   2357899999995 99999999653321       


Q ss_pred             ------CCChHHHHHHHHHHHhcccCC--CC-----CHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhc
Q 027177           78 ------DPHVLYTLSAVQVLALFDKVD--IL-----DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR  144 (227)
Q Consensus        78 ------~~~~~~T~~al~~L~~l~~~~--~~-----~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~  144 (227)
                            ++.+..|.+++.+|...+...  .+     .+.++++||.+.+..-          .+......+..+|.+.|.
T Consensus       384 g~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~----------~~~y~~a~layAL~l~g~  453 (915)
T 2hr0_B          384 GLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQMGR  453 (915)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGC----------CSHHHHHHHHHHHHTTTC
T ss_pred             CccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhcc----------CCHHHHHHHHHHHHHcCC
Confidence                  234667788888887765421  11     2568999999976431          111112223345666665


Q ss_pred             cCcccHHHHHHHHHhccCCCCC-cCCCCCC-CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177          145 LDKINVDKAVEYIVSCKNLDGG-FGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       145 ~~~~~~~~~~~~l~~~Q~~dGG-f~~~~~~-~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                      .    .+.+++.|.++.. +|. |.. ++. ..+.+.|+|||.+|...+..  ..+.++++||+++|+.+|||.
T Consensus       454 ~----a~~~l~~L~~~~~-~~~~w~~-~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~  519 (915)
T 2hr0_B          454 L----KGPLLNKFLTTAK-DKNRWED-PGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYG  519 (915)
T ss_dssp             C----CHHHHHHHHHTSB-TTTBCCC-SSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCC
T ss_pred             h----HHHHHHHHHhhcc-CCCCCCC-CCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCcc
Confidence            3    3456666766543 554 543 222 23678899999999988764  358899999999999999996

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=99.55  E-value=2.6e-14  Score=140.20  Aligned_cols=203  Identities=9%  Similarity=0.051  Sum_probs=138.2

Q ss_pred             HHHHHHHHHcccCCCCcchhhc----ccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCC----
Q 027177            7 DKHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI----   75 (227)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~----~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~----   75 (227)
                      +++++.+...|++||+|..|..    .+.+.|.|-|++..|..+...   ++..++++++||++.|++||+|....    
T Consensus       986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A          986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp             HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred             HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence            3455666667999999998863    357889999999999988753   23468899999999999999997421    


Q ss_pred             -----CCCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCC--CCCcccCCCCCCCccchhHHHHHHHHhhccCc
Q 027177           76 -----GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNE--DGSFSGDIWGEVDTRFSYIAICCLSILQRLDK  147 (227)
Q Consensus        76 -----~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~--dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~  147 (227)
                           |.++++..|++++.+|...+... ...++++++||++....  +|.      ...+......+..||++.|..  
T Consensus      1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~------~~~~~y~~AllAyAlal~g~~-- 1137 (1451)
T 4acq_A         1066 NAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGD------HGSHVYTKALLAYAFALAGNQ-- 1137 (1451)
T ss_dssp             GGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSC------SSSTHHHHHHHHHHHHHHTCH--
T ss_pred             hhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccc------ccCChHHHHHHHHHHHhcCCh--
Confidence                 22456788999999998876432 22368899999875211  010      011222233344677777762  


Q ss_pred             ccHHHHHHHHHhccCCCCC---cCCCCC-------------CCCchhhchHHHHHHHHhcCC----CCCCHHHHHHHHHc
Q 027177          148 INVDKAVEYIVSCKNLDGG---FGCTPG-------------GESHSGQIFCCVGALAIAGAL----HHVDKDLLGWWLCE  207 (227)
Q Consensus       148 ~~~~~~~~~l~~~Q~~dGG---f~~~~~-------------~~~~~~~T~~al~aL~~~g~~----~~~~~~~~~~wL~~  207 (227)
                      ...+.+++-|.+....+|+   |+....             .....+.|+|||.+|..++..    +...+.+.++||.+
T Consensus      1138 ~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~ 1217 (1451)
T 4acq_A         1138 DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITK 1217 (1451)
T ss_dssp             HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTT
T ss_pred             hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence            2234466666665555565   653221             123577999999999887632    11236778999999


Q ss_pred             cCccCCCcCC
Q 027177          208 RQVKSGGLNG  217 (227)
Q Consensus       208 ~Q~~~GGf~~  217 (227)
                      +|+.+|||.-
T Consensus      1218 qr~~~Ggf~S 1227 (1451)
T 4acq_A         1218 QQNAQGGFSS 1227 (1451)
T ss_dssp             CCCTTSCCSS
T ss_pred             cCCCCCCccc
Confidence            9999999963

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=6.3e-13  Score=130.04  Aligned_cols=161  Identities=12%  Similarity=0.097  Sum_probs=115.2

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCC-CC---HHHHHHHHHhccCCCCCcccCCC-----
Q 027177           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD---ADKVSNYIVGLQNEDGSFSGDIW-----  124 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~---~~~~~~~l~~~Q~~dGg~~~~~~-----  124 (227)
                      +++++++|+++|++||||+.+++.+++.+.|.+++.+|..+.+... ++   .+++++||.+.|.+||+|.+...     
T Consensus       874 i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~  953 (1325)
T 2pn5_A          874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKE  953 (1325)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHH
T ss_pred             HHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChh
Confidence            5567778899999999999999999999999999999999876432 44   57899999999999999976311     


Q ss_pred             --CC--CCccchhHHHHHHHHhhcc---CcccHHHHHHHHHhccCC-CCCcCCC--------------------------
Q 027177          125 --GE--VDTRFSYIAICCLSILQRL---DKINVDKAVEYIVSCKNL-DGGFGCT--------------------------  170 (227)
Q Consensus       125 --~~--~d~~~t~~a~~~L~~~g~~---~~~~~~~~~~~l~~~Q~~-dGGf~~~--------------------------  170 (227)
                        +.  .+..+|.+++.+|...|..   ....++++++||.+.|+. +++|+..                          
T Consensus       954 ~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~ 1033 (1325)
T 2pn5_A          954 MQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSF 1033 (1325)
T ss_dssp             HHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCE
T ss_pred             hcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhh
Confidence              11  1222333334444434432   123577888998887654 5554221                          


Q ss_pred             ---------CCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177          171 ---------PGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       171 ---------~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                               +...+....|+|||.+|...+..  ..+.+.++||+++|+.+|||.
T Consensus      1034 ~~~~~~~~~w~~~s~ve~tA~aLlall~~~~~--~~~~~~v~wL~~q~~~~g~w~ 1086 (1325)
T 2pn5_A         1034 IDADKNERFWNTTNPIETTAYALLSFVMAEKY--TDGIPVMNWLVNQRYVTGSFP 1086 (1325)
T ss_dssp             EETTTTEEECCSSSHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCCTTSSCS
T ss_pred             hccCCCcccCCCCCchHHHHHHHHHHhhhccc--hhhHHHHHHHHhccCCCCCcc
Confidence                     01134667889999998887643  346788999999999999996

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=99.42  E-value=6.4e-12  Score=116.85  Aligned_cols=200  Identities=16%  Similarity=0.159  Sum_probs=126.0

Q ss_pred             HHHHHHHHHH-------cccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHhccCCCCCccCCC
Q 027177            6 ADKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNI   75 (227)
Q Consensus         6 ~~~~~~yl~~-------~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~   75 (227)
                      +++++++|..       .|++||||..|++.+.+.|.|.|++.+|..+....   +..+.+++.||.+.|.+||.|...-
T Consensus       363 ~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g  442 (767)
T 4fxk_B          363 KDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPC  442 (767)
T ss_dssp             HHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSS
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcc
Confidence            4566666654       49999999999988899999999999999998752   3357789999999999999986421


Q ss_pred             --------C----CCCChHHHHHHHHHHHhcccCCC------------CCHHHHHHHHHhccCCCCCcccCCCCCCCccc
Q 027177           76 --------G----HDPHVLYTLSAVQVLALFDKVDI------------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF  131 (227)
Q Consensus        76 --------~----~~~~~~~T~~al~~L~~l~~~~~------------~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~  131 (227)
                              |    .+.++..|++++.+|........            ..+.++++||.+....+         ..++..
T Consensus       443 ~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~---------~~~~y~  513 (767)
T 4fxk_B          443 PVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG---------LLGAHA  513 (767)
T ss_dssp             CSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC---------CCCHHH
T ss_pred             hhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc---------cCCHHH
Confidence                    1    12346778888888765433210            01467888987763221         111111


Q ss_pred             hhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCC---cCCCCCC----------------------CCchhhchHHHHH
Q 027177          132 SYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG---FGCTPGG----------------------ESHSGQIFCCVGA  186 (227)
Q Consensus       132 t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGG---f~~~~~~----------------------~~~~~~T~~al~a  186 (227)
                      ...+..+|.+.+... ...+.+.+-|.+.-..+|+   |....+.                      ..+++.|+|+|.+
T Consensus       514 ~Al~ayaL~l~~~~~-~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla  592 (767)
T 4fxk_B          514 AAITAYALSLTKAPV-DLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLH  592 (767)
T ss_dssp             HHHHHHHHHHHTCTT-HHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcH-HHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHH
Confidence            112334566666522 1223344455543322222   2111110                      0135678999988


Q ss_pred             HHHhcCCCCCCHHHHHHHHHccCccCCCcC
Q 027177          187 LAIAGALHHVDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       187 L~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                      +..... +...+.++++||.++|+..|||.
T Consensus       593 ~l~~~~-~~~~a~~iv~WL~~Qr~~~Ggf~  621 (767)
T 4fxk_B          593 LLLHEG-KAEMADQASAWLTRQGSFQGGFR  621 (767)
T ss_dssp             HHHHTS-SCHHHHHHHHHHHHTCCTTSSCS
T ss_pred             HHhcCC-chhHHHHHHHHHHHhhcCCCCCc
Confidence            776542 23347889999999999999996

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=99.35  E-value=1.4e-12  Score=110.79  Aligned_cols=161  Identities=17%  Similarity=0.057  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhccCCCCCccCCCC--------------------------------------CCCChHHHHHHHHHHHhcc
Q 027177           54 EEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALFD   95 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l~   95 (227)
                      .+++.+.|+..|+++|||.-...                                      ...+...|..++.+|..+.
T Consensus        83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~  162 (408)
T 1r76_A           83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV  162 (408)
T ss_dssp             HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence            56899999999999999964210                                      0123356777888887653


Q ss_pred             cC-C--C-----CCHHHHHHHHHhccCCCCCcccCC-CCC--------CCccchhHHHHHHHHhhcc-------------
Q 027177           96 KV-D--I-----LDADKVSNYIVGLQNEDGSFSGDI-WGE--------VDTRFSYIAICCLSILQRL-------------  145 (227)
Q Consensus        96 ~~-~--~-----~~~~~~~~~l~~~Q~~dGg~~~~~-~~~--------~d~~~t~~a~~~L~~~g~~-------------  145 (227)
                      .. .  .     -.+.|+++||++.|.++|||...- ...        +| ..|--++..|..++..             
T Consensus       163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~  241 (408)
T 1r76_A          163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT  241 (408)
T ss_dssp             HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence            32 1  1     115789999999999999998642 110        11 1122233334444431             


Q ss_pred             -CcccHHHHHHHHHhccCC-CCCcCCCCCCCCchhhch-------------------HHHHHHHHhcCCCC---CCHHHH
Q 027177          146 -DKINVDKAVEYIVSCKNL-DGGFGCTPGGESHSGQIF-------------------CCVGALAIAGALHH---VDKDLL  201 (227)
Q Consensus       146 -~~~~~~~~~~~l~~~Q~~-dGGf~~~~~~~~~~~~T~-------------------~al~aL~~~g~~~~---~~~~~~  201 (227)
                       ....++|+++||+++|.+ ||.|. +++. .|.+.|+                   .+|..|......++   ..++++
T Consensus       242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~-qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~A  319 (408)
T 1r76_A          242 RALEATNAAIHCIVETQVVQDGKRL-GWGQ-QHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGG  319 (408)
T ss_dssp             HHHHHHHHHHHHHHHHSCEETTEEC-CCCS-EECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccCCccc-chhc-ccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence             235688999999999999 99998 6542 2222222                   22222222222111   138999


Q ss_pred             HHHHHccCccCCCcCC
Q 027177          202 GWWLCERQVKSGGLNG  217 (227)
Q Consensus       202 ~~wL~~~Q~~~GGf~~  217 (227)
                      +.||.++|+++|+|..
T Consensus       320 v~WL~s~Q~~dg~w~~  335 (408)
T 1r76_A          320 VAWLNTSVIRDRAWVK  335 (408)
T ss_dssp             HHHHHHSCCCC-----
T ss_pred             HHHHHHhhcCCCceee
Confidence            9999999999999973

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=99.34  E-value=1.5e-11  Score=122.47  Aligned_cols=196  Identities=13%  Similarity=0.142  Sum_probs=132.9

Q ss_pred             HHHHHHHHHH-------cccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHHHHHHHHh-ccCCCCCccCC
Q 027177            6 ADKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGN   74 (227)
Q Consensus         6 ~~~~~~yl~~-------~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~   74 (227)
                      +++++++|..       .|++||+|..|++.+.+.|.|.|++..|..+....   +..++++++||.+ .|++||.|...
T Consensus      1041 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A         1041 RQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccc
Confidence            3455666553       58999999999888889999999999999988642   3357799999995 99999998532


Q ss_pred             C--------C-----CCCChHHHHHHHHHHHhcccCC--CC-----CHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177           75 I--------G-----HDPHVLYTLSAVQVLALFDKVD--IL-----DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI  134 (227)
Q Consensus        75 ~--------~-----~~~~~~~T~~al~~L~~l~~~~--~~-----~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~  134 (227)
                      .        |     .++++..|++++.+|...+...  .+     .+.++++||.+....          ..++.....
T Consensus      1121 ~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~ 1190 (1661)
T 2b39_A         1121 GPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE----------LRRPYTVAI 1190 (1661)
T ss_dssp             SCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT----------CCSHHHHHH
T ss_pred             cceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc----------cCCHHHHHH
Confidence            1        1     1226777888888887764421  11     246789999875321          111122222


Q ss_pred             HHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCC
Q 027177          135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG  214 (227)
Q Consensus       135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GG  214 (227)
                      ++.+|.+.|..    .+.+++.|.+.......|....+...+.+.|+|||.+|...+..  ....+.++||+++|+.+||
T Consensus      1191 layAL~l~g~~----a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~--~~~~~iv~wL~~qr~~~gg 1264 (1661)
T 2b39_A         1191 AAYALALLGKL----EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDY--DTTPPVVRWLNEQRYYGGG 1264 (1661)
T ss_dssp             HHHHHHHTTCC----CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTSHHHHHHHHHCCTBTTB
T ss_pred             HHHHHHHcCCc----HHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCC
Confidence            33566777764    25566777765553334543212123567899999999888754  3367889999999999999


Q ss_pred             cCC
Q 027177          215 LNG  217 (227)
Q Consensus       215 f~~  217 (227)
                      |.-
T Consensus      1265 ~~S 1267 (1661)
T 2b39_A         1265 YGS 1267 (1661)
T ss_dssp             BCS
T ss_pred             ccc
Confidence            963

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=99.32  E-value=1.3e-13  Score=136.05  Aligned_cols=193  Identities=13%  Similarity=0.129  Sum_probs=0.0

Q ss_pred             HHHHHHHHHH-------cccCCCCcchhhcccchHHHHHHHHHHHHHhCCC----CCcCHHHHHHHHHh-ccCCCCCccC
Q 027177            6 ADKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILK-CQDESGGFAG   73 (227)
Q Consensus         6 ~~~~~~yl~~-------~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~----~~~~~~~~i~~l~~-~q~~dGgf~~   73 (227)
                      ++++++||+.       .|++||||..|.+.+.+.|.|.|++.+|......    ++..+.++++||.+ +|++||.|..
T Consensus      1025 ~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B         1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccc
Confidence            3567777765       4889999999987788999999999999988763    23467899999998 8999999954


Q ss_pred             CC------------CCCCChHHHHHHHHHHHhcccCC-------CCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177           74 NI------------GHDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI  134 (227)
Q Consensus        74 ~~------------~~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~  134 (227)
                      ..            +.++++..|++++.+|...+...       ...+.++++||.+....          ..+......
T Consensus      1105 ~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~----------~~~~Y~~Ai 1174 (1642)
T 3prx_B         1105 NAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK----------LQRPYTTAL 1174 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc----------CCCHHHHHH
Confidence            21            12456788888888887664321       12367899999875211          111111112


Q ss_pred             HHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCC-CCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCC
Q 027177          135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG  213 (227)
Q Consensus       135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~-~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~G  213 (227)
                      +..||.+.+....   +.+..+ .+.  ..--|. .++ ...+.+.|+|||.++...+..  ......++||.++|+..|
T Consensus      1175 ~aYAl~l~~~~~~---~~l~~l-~~~--~~~~W~-~~~~~~~~VE~TaYaLLa~l~~~~~--~~a~~iv~WL~~qr~~~G 1245 (1642)
T 3prx_B         1175 TAYALAAADQLND---DRVLMA-AST--GRDHWE-EYNAHTHNIEGTSYALLALLKMKKF--DQTGPIVRWLTDQNFYGE 1245 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCchH---HHHHHH-Hhc--CCCCCC-CCCCchHHHHHHHHHHHHHhccCch--hhHHHHHHHHHHhccCCC
Confidence            3345666676421   111111 111  112343 333 235788999999999887643  347889999999999999


Q ss_pred             CcCC
Q 027177          214 GLNG  217 (227)
Q Consensus       214 Gf~~  217 (227)
                      ||..
T Consensus      1246 gf~S 1249 (1642)
T 3prx_B         1246 TYGQ 1249 (1642)
T ss_dssp             ----
T ss_pred             cccC
Confidence            9975

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=7.9e-12  Score=122.35  Aligned_cols=174  Identities=14%  Similarity=0.121  Sum_probs=120.3

Q ss_pred             HHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC----CcCHHHHHHHHHhccCCCCCccCCCC--------
Q 027177            9 HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDESGGFAGNIG--------   76 (227)
Q Consensus         9 ~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~----~~~~~~~i~~l~~~q~~dGgf~~~~~--------   76 (227)
                      +++.+.++|++||+|+.|.+++.+.|.|.+++.+|..+....    +..++++++||.+.|++||.|.....        
T Consensus       877 g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g  956 (1325)
T 2pn5_A          877 GYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQG  956 (1325)
T ss_dssp             HHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHC
T ss_pred             HHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcC
Confidence            334446789999999999988899999999999999987532    23477999999999999999865321        


Q ss_pred             -CCCChHHHHHHHHHHHhcccCC---CCCHHHHHHHHHhccCC-CCCcccC-----------C-----------------
Q 027177           77 -HDPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNE-DGSFSGD-----------I-----------------  123 (227)
Q Consensus        77 -~~~~~~~T~~al~~L~~l~~~~---~~~~~~~~~~l~~~Q~~-dGg~~~~-----------~-----------------  123 (227)
                       ....+..|++++.+|...+...   ...++++++||.+.|.. +++|...           +                 
T Consensus       957 ~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~ 1036 (1325)
T 2pn5_A          957 GLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDA 1036 (1325)
T ss_dssp             CSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEET
T ss_pred             cccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhcc
Confidence             1234566777777765543221   12356788899887765 6666421           0                 


Q ss_pred             ------C-CCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhc
Q 027177          124 ------W-GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (227)
Q Consensus       124 ------~-~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g  191 (227)
                            | ..++++.|.+++.+|...+.  .....+.++||++.|+.+|||..       +-.|.+||.||....
T Consensus      1037 ~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~AL~~y~ 1102 (1325)
T 2pn5_A         1037 DKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKALTKMA 1102 (1325)
T ss_dssp             TTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHHHHHHH
Confidence                  0 01234455556655555554  33567899999999999999973       346888888887653

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=99.23  E-value=2.1e-12  Score=106.82  Aligned_cols=153  Identities=16%  Similarity=0.122  Sum_probs=98.3

Q ss_pred             HHHHHHHhccCCCCCccCCCC-------------CCCChHHHHHHHHHHHhcccCC-----CCCHHHHHHHHHhccCCCC
Q 027177           56 DVISWILKCQDESGGFAGNIG-------------HDPHVLYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDG  117 (227)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~-------------~~~~~~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~Q~~dG  117 (227)
                      .+.+.|+..|+++|||.-...             ...+...|..++.+|..+....     .-.++|+++||.+.|.++|
T Consensus        35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG  114 (332)
T 1gxm_A           35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  114 (332)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence            347899999999999985321             1235567888888887653311     1125889999999999999


Q ss_pred             CcccC-CCCC--------CCccchhHHHHHHHHhhc----------------cCcccHHHHHHHHHhccCCCCCcCCCCC
Q 027177          118 SFSGD-IWGE--------VDTRFSYIAICCLSILQR----------------LDKINVDKAVEYIVSCKNLDGGFGCTPG  172 (227)
Q Consensus       118 g~~~~-~~~~--------~d~~~t~~a~~~L~~~g~----------------~~~~~~~~~~~~l~~~Q~~dGGf~~~~~  172 (227)
                      ||... +...        +| ..|--++..|..++.                .....++|+++||+++|.+||||-.+++
T Consensus       115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg  193 (332)
T 1gxm_A          115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC  193 (332)
T ss_dssp             CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred             CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence            99864 2111        11 112233444444431                1134688999999999999999987766


Q ss_pred             CCCchhhchH----------HHHHHHH-------hcCCCCC----CHHHHHHHHHccCc
Q 027177          173 GESHSGQIFC----------CVGALAI-------AGALHHV----DKDLLGWWLCERQV  210 (227)
Q Consensus       173 ~~~~~~~T~~----------al~aL~~-------~g~~~~~----~~~~~~~wL~~~Q~  210 (227)
                      . .|.+.|+.          +|+++..       ++.+.++    .++++++||.++|+
T Consensus       194 ~-qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~  251 (332)
T 1gxm_A          194 A-QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT  251 (332)
T ss_dssp             S-EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred             c-ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence            3 33344444          3333222       2333322    38999999999998

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.18  E-value=3.1e-10  Score=96.85  Aligned_cols=108  Identities=17%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCCC----
Q 027177           53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIWG----  125 (227)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~~----  125 (227)
                      .++++++||++.|++||||+.+.+..++...|.+++.+|..++..-.++   ++++++||.+.|++||+|.+....    
T Consensus        92 ~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~  171 (367)
T 1hzf_A           92 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRS  171 (367)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccccccccc
Confidence            4668999999999999999998887788999999999999887543333   588999999999999999874211    


Q ss_pred             --------CCCccchhHHHHHHHHhhcc------------CcccHHHHHHHHHhc
Q 027177          126 --------EVDTRFSYIAICCLSILQRL------------DKINVDKAVEYIVSC  160 (227)
Q Consensus       126 --------~~d~~~t~~a~~~L~~~g~~------------~~~~~~~~~~~l~~~  160 (227)
                              ++++..|.+++.+|...+..            ....++++++||.+.
T Consensus       172 ~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~  226 (367)
T 1hzf_A          172 MQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK  226 (367)
T ss_dssp             GGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence                    12344566677777655531            123578999999886

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=99.17  E-value=1.9e-10  Score=114.71  Aligned_cols=201  Identities=13%  Similarity=0.041  Sum_probs=128.9

Q ss_pred             cHHHHHHHHHH-------cccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHh-ccCCCCCccC
Q 027177            5 AADKHVKYIIS-------VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILK-CQDESGGFAG   73 (227)
Q Consensus         5 ~~~~~~~yl~~-------~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~-~q~~dGgf~~   73 (227)
                      .+++++++|..       .|++||+|..|.+.+.+.|.|.|++..|..+...   ++..++++++||.+ .|++||.|..
T Consensus      1041 ~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A         1041 EKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp             HHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence            34567777654       4899999999987788999999999999988764   23357799999999 9999999854


Q ss_pred             CCC--------C------CCChHHHHHHHHHHHhcccCCC-----CCHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177           74 NIG--------H------DPHVLYTLSAVQVLALFDKVDI-----LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI  134 (227)
Q Consensus        74 ~~~--------~------~~~~~~T~~al~~L~~l~~~~~-----~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~  134 (227)
                      ...        .      ++++..|++++.+|...+....     ..+.++++||.+....          ..++.....
T Consensus      1121 ~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~ 1190 (1676)
T 3cu7_A         1121 NSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP----------AQSTFTLAI 1190 (1676)
T ss_dssp             CSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS----------CSCHHHHHH
T ss_pred             CccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc----------cCCHHHHHH
Confidence            211        0      0145567777777776543211     1246789999875321          111111122


Q ss_pred             HHHHHHHhhccCcccHHHHHHHHHhccC-CCC-----CcCCCCC---------C-CCchhhchHHHHHHHHhcCCCCCCH
Q 027177          135 AICCLSILQRLDKINVDKAVEYIVSCKN-LDG-----GFGCTPG---------G-ESHSGQIFCCVGALAIAGALHHVDK  198 (227)
Q Consensus       135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~-~dG-----Gf~~~~~---------~-~~~~~~T~~al~aL~~~g~~~~~~~  198 (227)
                      +..+|.+.|... ...+.+++.|.+... .++     .|...+.         . ..+...|+++|.+|...+.  ...+
T Consensus      1191 lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~~--~~~~ 1267 (1676)
T 3cu7_A         1191 SAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLKD--INYV 1267 (1676)
T ss_dssp             HHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred             HHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcCC--hhHH
Confidence            234555566532 114556677766443 222     4432210         1 1246788999999888763  2246


Q ss_pred             HHHHHHHHccCccCCCcCCC
Q 027177          199 DLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       199 ~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      .+.++||+++|+.+|||.--
T Consensus      1268 ~~iv~wL~~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A         1268 NPVIKWLSEEQRYGGGFYST 1287 (1676)
T ss_dssp             HHHHHHHHHHSCSSSCCSTT
T ss_pred             HHHHHHHHhccCCCCCcccc
Confidence            78899999999999999743

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=99.12  E-value=1.1e-10  Score=99.16  Aligned_cols=162  Identities=13%  Similarity=0.091  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHcccCCCCcchhhcc--c------------------------------------chHHHHHHHHHHHHHhC
Q 027177            6 ADKHVKYIISVEKKKDSFESVVME--H------------------------------------LRLNGAYWGLTTLDILG   47 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~--~------------------------------------~~~~~~y~~l~~l~ll~   47 (227)
                      ..+..+.|...|++.|+|......  +                                    .+.-.|.-++..|..+.
T Consensus        83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~  162 (408)
T 1r76_A           83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV  162 (408)
T ss_dssp             HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence            345668889999999999532110  0                                    11123545555565543


Q ss_pred             CC----C----CcCHHHHHHHHHhccCCCCCccCCCCC----CCCh----HHHHHHHHHHHhcccC----C---------
Q 027177           48 KL----D----AVDEEDVISWILKCQDESGGFAGNIGH----DPHV----LYTLSAVQVLALFDKV----D---------   98 (227)
Q Consensus        48 ~~----~----~~~~~~~i~~l~~~q~~dGgf~~~~~~----~~~~----~~T~~al~~L~~l~~~----~---------   98 (227)
                      ..    .    ...++++++||++.|.++|||+.+.-.    ..|+    ..|.-+|..|..+...    .         
T Consensus       163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~  242 (408)
T 1r76_A          163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR  242 (408)
T ss_dssp             HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence            22    1    124679999999999999999876421    1111    2566667767655431    0         


Q ss_pred             -CCCHHHHHHHHHhccCC-CCCcccCCCCCCC-----------------ccchhHHHHHHHHhhccC-c----ccHHHHH
Q 027177           99 -ILDADKVSNYIVGLQNE-DGSFSGDIWGEVD-----------------TRFSYIAICCLSILQRLD-K----INVDKAV  154 (227)
Q Consensus        99 -~~~~~~~~~~l~~~Q~~-dGg~~~~~~~~~d-----------------~~~t~~a~~~L~~~g~~~-~----~~~~~~~  154 (227)
                       ...++|+++||++.|.+ ||.|.  .|+...                 ++..-.+...+.+++... .    ..|++++
T Consensus       243 ~~~av~Rgi~~Ll~~Qe~~dGsw~--rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av  320 (408)
T 1r76_A          243 ALEATNAAIHCIVETQVVQDGKRL--GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV  320 (408)
T ss_dssp             HHHHHHHHHHHHHHHSCEETTEEC--CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccCCccc--chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence             11258899999999999 99987  333211                 111112222334444422 1    2589999


Q ss_pred             HHHHhccCCCCCcCC
Q 027177          155 EYIVSCKNLDGGFGC  169 (227)
Q Consensus       155 ~~l~~~Q~~dGGf~~  169 (227)
                      +||.++|++||+|-.
T Consensus       321 ~WL~s~Q~~dg~w~~  335 (408)
T 1r76_A          321 AWLNTSVIRDRAWVK  335 (408)
T ss_dssp             HHHHHSCCCC-----
T ss_pred             HHHHHhhcCCCceee
Confidence            999999999999973

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=98.89  E-value=2.8e-10  Score=94.22  Aligned_cols=153  Identities=12%  Similarity=0.164  Sum_probs=94.7

Q ss_pred             HHHHHHcccCCCCcchhhc-------------ccchHHHHHHHHHHHHHhCCC--C---CcCHHHHHHHHHhccCCCCCc
Q 027177           10 VKYIISVEKKKDSFESVVM-------------EHLRLNGAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESGGF   71 (227)
Q Consensus        10 ~~yl~~~q~~dg~~~~~~~-------------~~~~~~~~y~~l~~l~ll~~~--~---~~~~~~~i~~l~~~q~~dGgf   71 (227)
                      -+.|...|++.|+|.....             -..+.-.|.-++..|+-+...  +   ...++++++||++.|.++|||
T Consensus        37 Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGW  116 (332)
T 1gxm_A           37 ADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGAL  116 (332)
T ss_dssp             HHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCC
T ss_pred             HHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCc
Confidence            4667788999999964210             112223354566666554331  1   125679999999999999999


Q ss_pred             cCCCCC----CCCh----HHHHHHHHHHHhccc----CC------------CCCHHHHHHHHHhccCCCCCcccCCCCCC
Q 027177           72 AGNIGH----DPHV----LYTLSAVQVLALFDK----VD------------ILDADKVSNYIVGLQNEDGSFSGDIWGEV  127 (227)
Q Consensus        72 ~~~~~~----~~~~----~~T~~al~~L~~l~~----~~------------~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~  127 (227)
                      +.+.-.    ..++    ..|.-+|..|..+..    .+            ...++|+++||++.|.++|||-+ .|+..
T Consensus       117 pqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g-~Wg~q  195 (332)
T 1gxm_A          117 PQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLT-VWCAQ  195 (332)
T ss_dssp             BSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSE
T ss_pred             cccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcC-eeccc
Confidence            976321    1121    357777888877642    11            11258899999999999999875 34322


Q ss_pred             CccchhH----------------HH-HHHHHhhccCcc----cHHHHHHHHHhccCC
Q 027177          128 DTRFSYI----------------AI-CCLSILQRLDKI----NVDKAVEYIVSCKNL  163 (227)
Q Consensus       128 d~~~t~~----------------a~-~~L~~~g~~~~~----~~~~~~~~l~~~Q~~  163 (227)
                      +...|..                ++ ....+++....+    .|+++++||.++|++
T Consensus       196 ydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~  252 (332)
T 1gxm_A          196 HGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY  252 (332)
T ss_dssp             ECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred             cccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence            2222221                12 222334443322    489999999999994

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=98.82  E-value=4.9e-08  Score=92.35  Aligned_cols=142  Identities=20%  Similarity=0.164  Sum_probs=96.0

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCC-----
Q 027177           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW-----  124 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~-----  124 (227)
                      ++++++++++.|++||||+.+++.+++.+.|.+++..|..+.....++   +.++++||.+ .|.+||+|.....     
T Consensus       301 i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~  380 (915)
T 2hr0_B          301 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE  380 (915)
T ss_dssp             HHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSC
T ss_pred             HHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchh
Confidence            456788899999999999999888889999999999999887543444   5889999995 9999999975311     


Q ss_pred             ---C-----CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHH
Q 027177          125 ---G-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (227)
Q Consensus       125 ---~-----~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~  189 (227)
                         +     ++++..|.+++.+|...|..       ....++++++||.+.+..   +       .+++..+..-.+|.+
T Consensus       381 m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~---~-------~~~y~~a~layAL~l  450 (915)
T 2hr0_B          381 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN---L-------QRSYTVAIAGYALAQ  450 (915)
T ss_dssp             CCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGG---C-------CSHHHHHHHHHHHHT
T ss_pred             hcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHH
Confidence               0     12234455666777666542       133578899999987653   1       112222222224444


Q ss_pred             hcCCCCCCHHHHHHHHHccC
Q 027177          190 AGALHHVDKDLLGWWLCERQ  209 (227)
Q Consensus       190 ~g~~~~~~~~~~~~wL~~~Q  209 (227)
                      +|..    .+.++..|.++.
T Consensus       451 ~g~~----a~~~l~~L~~~~  466 (915)
T 2hr0_B          451 MGRL----KGPLLNKFLTTA  466 (915)
T ss_dssp             TTCC----CHHHHHHHHHTS
T ss_pred             cCCh----HHHHHHHHHhhc
Confidence            5532    456677776654

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=98.76  E-value=6e-08  Score=95.49  Aligned_cols=153  Identities=17%  Similarity=0.109  Sum_probs=104.6

Q ss_pred             HHHHHHHHHhccCCCCCccCCCC----CCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccC-CC-
Q 027177           54 EEDVISWILKCQDESGGFAGNIG----HDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGD-IW-  124 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~-~~-  124 (227)
                      ++++++|++++|++||||+.+++    ..++.+.|.+++..|..+...-.++   ..++++||.+.|++||+|... ++ 
T Consensus       985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~ 1064 (1451)
T 4acq_A          985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLL 1064 (1451)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCS
T ss_pred             HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCccc
Confidence            56788999999999999998864    4578999999999999887542232   688999999999999999842 11 


Q ss_pred             ------C-CCCccchhHHHHHHHHhhcc-CcccHHHHHHHHHhccCC--CCCcCCCCCCCCchhhchHHHHHHHHhcCCC
Q 027177          125 ------G-EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNL--DGGFGCTPGGESHSGQIFCCVGALAIAGALH  194 (227)
Q Consensus       125 ------~-~~d~~~t~~a~~~L~~~g~~-~~~~~~~~~~~l~~~Q~~--dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~  194 (227)
                            + +.++..|.+++.+|...|.. ....++++++||.+....  +|.-      ..+++..+..-.||+++|.. 
T Consensus      1065 ~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~~------~~~~y~~AllAyAlal~g~~- 1137 (1451)
T 4acq_A         1065 NNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGDH------GSHVYTKALLAYAFALAGNQ- 1137 (1451)
T ss_dssp             CGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSCS------SSTHHHHHHHHHHHHHHTCH-
T ss_pred             chhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccccc------cCChHHHHHHHHHHHhcCCh-
Confidence                  1 23344577777888877763 245688999999875211  1211      13344444445556667642 


Q ss_pred             CCCHHHHHHHHHccCccCCC
Q 027177          195 HVDKDLLGWWLCERQVKSGG  214 (227)
Q Consensus       195 ~~~~~~~~~wL~~~Q~~~GG  214 (227)
                       ...+.+++=|.+....+||
T Consensus      1138 -~~~~~~l~~L~~~a~~~~~ 1156 (1451)
T 4acq_A         1138 -DKRKEVLKSLNEEAVKKDN 1156 (1451)
T ss_dssp             -HHHHHHHHHHHHHCCBCSS
T ss_pred             -hHHHHHHHHHHHHhhccCC
Confidence             1234466667766666677

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.68  E-value=1.1e-07  Score=81.41  Aligned_cols=130  Identities=15%  Similarity=0.052  Sum_probs=88.8

Q ss_pred             HHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCC-CC----CHHHHH----HH
Q 027177           38 WGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-IL----DADKVS----NY  108 (227)
Q Consensus        38 ~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~~----~~~~~~----~~  108 (227)
                      +++.+|...+..   .....++.|+..|+. ++|.  .+...++.+|..|+.+|..+.+.. ..    .+++++    ++
T Consensus       141 L~vLALC~~g~~---v~~~~v~~Ll~~~~~-~~~~--~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~  214 (414)
T 2bb6_A          141 LGILALCVHQKR---VHDSVVGKLLYAVEH-KPHL--LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEK  214 (414)
T ss_dssp             HHHHHHHHTTCC---CCHHHHHHHHHHHHS-SSCS--CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC---ccHHHHHHHHHHhhc-cCcC--CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Confidence            455555555543   345577777776653 4443  223457888888999888876421 11    145555    78


Q ss_pred             HHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCc---ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHH
Q 027177          109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVG  185 (227)
Q Consensus       109 l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~---~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~  185 (227)
                      |.+.|++||+|+       ++..|-.|+.+|...+..+.   .+..+++++|++ |.+||+|.       ++-.|+.+|.
T Consensus       215 l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~lp  279 (414)
T 2bb6_A          215 ILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQLLP  279 (414)
T ss_dssp             HHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHHHH
T ss_pred             HHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHHHH
Confidence            888999999996       34668888888888876432   256789999999 99999997       3457777777


Q ss_pred             HHH
Q 027177          186 ALA  188 (227)
Q Consensus       186 aL~  188 (227)
                      +|.
T Consensus       280 aL~  282 (414)
T 2bb6_A          280 VLN  282 (414)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            764

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.47  E-value=3.3e-07  Score=78.36  Aligned_cols=116  Identities=14%  Similarity=0.042  Sum_probs=76.1

Q ss_pred             HHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccC-----cccHHHHH----HHH
Q 027177           87 AVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KINVDKAV----EYI  157 (227)
Q Consensus        87 al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~-----~~~~~~~~----~~l  157 (227)
                      ++.+|...+.  .+. .+.+..|...|. +++|..  .+..|+..+..|+.||..++...     ...+++++    ++|
T Consensus       142 ~vLALC~~g~--~v~-~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l  215 (414)
T 2bb6_A          142 GILALCVHQK--RVH-DSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKI  215 (414)
T ss_dssp             HHHHHHHTTC--CCC-HHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC--Ccc-HHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Confidence            4444444333  333 446666666554 344431  11235666767777787776521     23356666    788


Q ss_pred             HhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCC---CCHHHHHHHHHccCccCCCcC
Q 027177          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       158 ~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~---~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                      .+.|++||+||       +.+.|..|+.+|...+....   .+..++++||++ |.++|+|+
T Consensus       216 ~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~  269 (414)
T 2bb6_A          216 LKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ  269 (414)
T ss_dssp             HHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred             HHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence            88899999997       24559999999998876422   245678999998 99999997

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.41  E-value=5.9e-06  Score=82.65  Aligned_cols=143  Identities=17%  Similarity=0.141  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCC-----
Q 027177           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW-----  124 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~-----  124 (227)
                      ++.+++-+++.|++||||+.+++.+++.+.|.+++..|..+.+.-.++   ..++++||.+ .|.++|.|.....     
T Consensus      1048 i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~ 1127 (1661)
T 2b39_A         1048 IRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQE 1127 (1661)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTT
T ss_pred             HHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechh
Confidence            334566677899999999999888889999999999999887654444   5789999995 9999999964211     


Q ss_pred             --------CCCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHH
Q 027177          125 --------GEVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (227)
Q Consensus       125 --------~~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~  189 (227)
                              .++++..|.+++.+|...|..       ....++++++||.+... +  +       .+++..+..-.+|.+
T Consensus      1128 ~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~-~--~-------~~~y~~A~layAL~l 1197 (1661)
T 2b39_A         1128 MIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYR-E--L-------RRPYTVAIAAYALAL 1197 (1661)
T ss_dssp             SCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTT-T--C-------CSHHHHHHHHHHHHH
T ss_pred             hcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhh-c--c-------CCHHHHHHHHHHHHH
Confidence                    112444556667777665542       12356789999977532 1  1       223333333344555


Q ss_pred             hcCCCCCCHHHHHHHHHccCc
Q 027177          190 AGALHHVDKDLLGWWLCERQV  210 (227)
Q Consensus       190 ~g~~~~~~~~~~~~wL~~~Q~  210 (227)
                      +|..    .++++..|.+...
T Consensus      1198 ~g~~----a~~~l~~L~~~~~ 1214 (1661)
T 2b39_A         1198 LGKL----EGDRLTKFLNTAK 1214 (1661)
T ss_dssp             TTCC----CHHHHHHHHHHSB
T ss_pred             cCCc----HHHHHHHHHhhcc
Confidence            6543    4667777777654

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.31  E-value=1.4e-05  Score=74.18  Aligned_cols=130  Identities=17%  Similarity=0.147  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHhCCC---CCc-------CHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC-
Q 027177           33 LNGAYWGLTTLDILGKL---DAV-------DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD-  101 (227)
Q Consensus        33 ~~~~y~~l~~l~ll~~~---~~~-------~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~-  101 (227)
                      +.-..|++..|...+..   .+.       .++++++-+++.|++||||+.+.+.+++.+.|.+++..|..+.....++ 
T Consensus       339 ~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~  418 (767)
T 4fxk_B          339 LAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSP  418 (767)
T ss_dssp             THHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCH
T ss_pred             hhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcch
Confidence            33344677777766542   111       1445666677889999999999988899999999999999987765444 


Q ss_pred             --HHHHHHHHHhccCCCCCcccCCC--------C----CCCccchhHHHHHHHHhhccC------------cccHHHHHH
Q 027177          102 --ADKVSNYIVGLQNEDGSFSGDIW--------G----EVDTRFSYIAICCLSILQRLD------------KINVDKAVE  155 (227)
Q Consensus       102 --~~~~~~~l~~~Q~~dGg~~~~~~--------~----~~d~~~t~~a~~~L~~~g~~~------------~~~~~~~~~  155 (227)
                        ...++.||...|.+||.|.....        +    ..++..|.+++.+|...+...            ...+.+++.
T Consensus       419 ~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~  498 (767)
T 4fxk_B          419 EKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANS  498 (767)
T ss_dssp             HHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHH
Confidence              56789999999999999975311        1    112344555666665544321            124678889


Q ss_pred             HHHhccC
Q 027177          156 YIVSCKN  162 (227)
Q Consensus       156 ~l~~~Q~  162 (227)
                      ||.....
T Consensus       499 ~L~~~~~  505 (767)
T 4fxk_B          499 FLGEKAS  505 (767)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9876543

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=98.26  E-value=1.7e-06  Score=73.60  Aligned_cols=115  Identities=14%  Similarity=0.073  Sum_probs=79.7

Q ss_pred             HHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhc---cC---------cccHHHH
Q 027177           86 SAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR---LD---------KINVDKA  153 (227)
Q Consensus        86 ~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~---~~---------~~~~~~~  153 (227)
                      +++.+|++.-....+ ..+.+.-|...|+.||++       .++..+..|+.||..+..   ..         ...++++
T Consensus       117 ~sL~vLALC~~~~~v-~~~~v~kLl~~~~~~g~~-------~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~  188 (399)
T 2pmv_A          117 PSLAILALCQKNSEA-TLPIAVRFAKTLLANSSP-------FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDI  188 (399)
T ss_dssp             HHHHHHHHHHHCHHH-HHHHHHHHHHHHHHCCSC-------CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCCc-------ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            355555554221122 355677777777777421       244455556666666654   11         2246778


Q ss_pred             HHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC--CCCCHHHHHHHHHccCccCCCcC
Q 027177          154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       154 ~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                      +++|++.|++||+||       +.+.|..|+.||...+..  ..++..++++||++ |..+|+|+
T Consensus       189 ~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~  245 (399)
T 2pmv_A          189 VEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH  245 (399)
T ss_dssp             HHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred             HHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence            899999999999997       478899999999999863  23478899999998 99999996

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=98.15  E-value=1.4e-05  Score=80.15  Aligned_cols=145  Identities=12%  Similarity=0.041  Sum_probs=91.4

Q ss_pred             HHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHh-ccCCCCCcccCCC--------
Q 027177           57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW--------  124 (227)
Q Consensus        57 ~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGg~~~~~~--------  124 (227)
                      .++-+++.|++||||+.+.+..++.+.|.+++..|..+.+.-.++   ..++++||.+ .|.+||.|.....        
T Consensus      1052 g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~g 1131 (1676)
T 3cu7_A         1052 GMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQG 1131 (1676)
T ss_dssp             HHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCS
T ss_pred             HHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcC
Confidence            344456789999999999878889999999999999887644444   5789999999 9999999964211        


Q ss_pred             CC------CCccchhHHHHHHHHhhcc-----CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC
Q 027177          125 GE------VDTRFSYIAICCLSILQRL-----DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL  193 (227)
Q Consensus       125 ~~------~d~~~t~~a~~~L~~~g~~-----~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~  193 (227)
                      +.      +++..|.+++.+|...+..     ....+.++++||.+....   +       .+++..+..-.+|.++|. 
T Consensus      1132 g~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~- 1200 (1676)
T 3cu7_A         1132 TLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFTLAISAYALSLGDK- 1200 (1676)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCT-
T ss_pred             CcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCC-
Confidence            00      1333445566666555442     123567899999775321   1       222222222223333432 


Q ss_pred             CCCC-HHHHHHHHHccCccCC
Q 027177          194 HHVD-KDLLGWWLCERQVKSG  213 (227)
Q Consensus       194 ~~~~-~~~~~~wL~~~Q~~~G  213 (227)
                       ... .++++..|.+....+|
T Consensus      1201 -~~~~a~~~l~~L~~~a~~~~ 1220 (1676)
T 3cu7_A         1201 -THPQFRSIVSALKREALVKG 1220 (1676)
T ss_dssp             -TCHHHHHHHHHHHHHCEEET
T ss_pred             -chhhHHHHHHHHHhhhhhcc
Confidence             222 5677788887665333

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=98.14  E-value=4.9e-06  Score=70.78  Aligned_cols=129  Identities=16%  Similarity=0.079  Sum_probs=89.0

Q ss_pred             HHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhccc---CC-C------C--CHHHH
Q 027177           38 WGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---VD-I------L--DADKV  105 (227)
Q Consensus        38 ~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~---~~-~------~--~~~~~  105 (227)
                      +++..|++.-... ......++-|...|+.||+       .-++..++.|+.+|..+.+   .. .      +  -++++
T Consensus       117 ~sL~vLALC~~~~-~v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~  188 (399)
T 2pmv_A          117 PSLAILALCQKNS-EATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDI  188 (399)
T ss_dssp             HHHHHHHHHHHCH-HHHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            5555555543321 2466777888888877742       2357777778888877755   11 0      1  14678


Q ss_pred             HHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHH
Q 027177          106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC  183 (227)
Q Consensus       106 ~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~a  183 (227)
                      +++|.+.|++||+|+       ++..|--|+.+|...+..  ...+..++.++|++ |..||+|+       ++-.|+..
T Consensus       189 ~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQi  253 (399)
T 2pmv_A          189 VEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQI  253 (399)
T ss_dssp             HHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHH
T ss_pred             HHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHH
Confidence            899999999999996       456677778888877762  22267889999999 89999997       34567777


Q ss_pred             HHHHHH
Q 027177          184 VGALAI  189 (227)
Q Consensus       184 l~aL~~  189 (227)
                      |-+|.-
T Consensus       254 lPaL~~  259 (399)
T 2pmv_A          254 LPSLKG  259 (399)
T ss_dssp             HHHHTT
T ss_pred             HHHhcC
Confidence            777643

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=97.60  E-value=8.9e-06  Score=80.89  Aligned_cols=107  Identities=15%  Similarity=0.171  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCC-CC---HHHHHHHHHh-ccCCCCCcccCC-----
Q 027177           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD---ADKVSNYIVG-LQNEDGSFSGDI-----  123 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~---~~~~~~~l~~-~Q~~dGg~~~~~-----  123 (227)
                      ++..++-+++.|++||||+.+.+.+++.+.|++++..|..+.+.-. +|   +.++++||.+ .|++||.|....     
T Consensus      1032 i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~ 1111 (1642)
T 3prx_B         1032 IVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSG 1111 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccch
Confidence            4456666777899999999987777889999999999988765422 33   6789999998 899999997531     


Q ss_pred             ---CC----CCCccchhHHHHHHHHhhcc-------CcccHHHHHHHHHhc
Q 027177          124 ---WG----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSC  160 (227)
Q Consensus       124 ---~~----~~d~~~t~~a~~~L~~~g~~-------~~~~~~~~~~~l~~~  160 (227)
                         ++    +.++.-|.+++.+|...+..       ....+++++.||.+.
T Consensus      1112 ~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B         1112 TMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp             ---------------------------------------------------
T ss_pred             hccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence               11    23555666666666554432       133678899999764

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=96.27  E-value=0.087  Score=48.35  Aligned_cols=47  Identities=9%  Similarity=0.070  Sum_probs=31.5

Q ss_pred             ccHHHHHHHHHhccCCCC-CcCCCCCCCCchhhchHHHHHHHHhcCCCC
Q 027177          148 INVDKAVEYIVSCKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHH  195 (227)
Q Consensus       148 ~~~~~~~~~l~~~Q~~dG-Gf~~~~~~~~~~~~T~~al~aL~~~g~~~~  195 (227)
                      ..|+.+.++|-++...+| +|. ......|+..|+-+.-.|...|..-+
T Consensus       266 ~EI~~~L~~i~~~~~~~g~~~~-~~~~~~DL~~tAL~FRLLRqhGy~VS  313 (727)
T 3pya_A          266 EEIKECLDYVHRYWTDNGICWA-RCSHVQDIDDTAMAFRLLRQHGYQVS  313 (727)
T ss_dssp             HHHHHHHHHHHHTCCTTCCCSS-SSCSCCCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHhhhcCcccc-cCCCCCCHHHHHHHHHHHHhCCCCCC
Confidence            357778888877644333 232 11234789999999999999997533

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=95.95  E-value=0.013  Score=54.48  Aligned_cols=98  Identities=19%  Similarity=0.210  Sum_probs=59.6

Q ss_pred             HHHHHHHHHccc---CCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCC--
Q 027177            7 DKHVKYIISVEK---KKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHD--   78 (227)
Q Consensus         7 ~~~~~yl~~~q~---~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--   78 (227)
                      ++.++-|++..+   .||.++..   ..+..-|.|    ++++...   .......+++||+..|.+||+|+......  
T Consensus        57 ~~Lie~VK~~l~~~~~~g~~g~~---S~S~YDTAW----VAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~  129 (817)
T 3sdr_A           57 EVLVSEIKAMLNPAITGDGESMI---TPSAYDTAW----VARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLS  129 (817)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCCCC---CCCHHHHHH----HHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHH
T ss_pred             HHHHHHHHHHhccccCCCCCccc---ccCHHHhhH----HheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchH
Confidence            344555555543   45522211   223445667    4455433   23456799999999999999998643211  


Q ss_pred             CChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhc
Q 027177           79 PHVLYTLSAVQVLALFDKVDILDADKVSNYIVGL  112 (227)
Q Consensus        79 ~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~  112 (227)
                      .-+.+|.+|+.+|..-+.. ...+++++.||++.
T Consensus       130 d~ll~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~n  162 (817)
T 3sdr_A          130 DRLLATLSCVLVLLKWNVG-DLQVEQGIEFIKSN  162 (817)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHH
Confidence            1378999999888764321 12367788888775

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=95.86  E-value=0.0053  Score=57.14  Aligned_cols=62  Identities=15%  Similarity=0.122  Sum_probs=43.6

Q ss_pred             CcccHHHHHHHHHhccCCCCCcCCCCCCC-C-chhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177          146 DKINVDKAVEYIVSCKNLDGGFGCTPGGE-S-HSGQIFCCVGALAIAGALHHVDKDLLGWWLCER  208 (227)
Q Consensus       146 ~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~-~-~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~  208 (227)
                      ..+....+++||++.|.+||+||...... . -...|..+|.||..-+. .+..+++++.||.++
T Consensus        99 ~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n  162 (817)
T 3sdr_A           99 ARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSN  162 (817)
T ss_dssp             SSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            34556789999999999999999533211 1 24567778888877542 233578899999875

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=95.51  E-value=0.0076  Score=55.83  Aligned_cols=61  Identities=13%  Similarity=0.082  Sum_probs=43.9

Q ss_pred             cccHHHHHHHHHhccCCCCCcCCCCC-CCCc-hhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177          147 KINVDKAVEYIVSCKNLDGGFGCTPG-GESH-SGQIFCCVGALAIAGALHHVDKDLLGWWLCER  208 (227)
Q Consensus       147 ~~~~~~~~~~l~~~Q~~dGGf~~~~~-~~~~-~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~  208 (227)
                      .+....+++||++.|.+||+||.... ...| ...|..+|.||..-+. .+..+++++.||.++
T Consensus        73 ~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n  135 (785)
T 3s9v_A           73 NPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRT-GETQVQKGIEFFRTQ  135 (785)
T ss_dssp             SBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHH
Confidence            44567899999999999999996422 1123 5678888888877542 233578899999765

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=95.18  E-value=0.033  Score=51.62  Aligned_cols=76  Identities=17%  Similarity=0.306  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCC-C-hHHHHHHHHHHHhcccCCCCCHHHHH
Q 027177           32 RLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP-H-VLYTLSAVQVLALFDKVDILDADKVS  106 (227)
Q Consensus        32 ~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~-~-~~~T~~al~~L~~l~~~~~~~~~~~~  106 (227)
                      +..-|.|    .+++...   .......+++||+..|.+||+|+....... + +.+|.+|+.+|..-+... ..+++++
T Consensus        55 S~YDTAW----Vamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~-~~i~~Gl  129 (785)
T 3s9v_A           55 SAYDTAW----VARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGE-TQVQKGI  129 (785)
T ss_dssp             CHHHHHH----HTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHH
T ss_pred             cHHHhhH----HhccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCH-HHHHHHH
Confidence            3445667    3444332   223567999999999999999986432111 2 789999999887643211 2367888


Q ss_pred             HHHHhc
Q 027177          107 NYIVGL  112 (227)
Q Consensus       107 ~~l~~~  112 (227)
                      .||++.
T Consensus       130 ~fl~~n  135 (785)
T 3s9v_A          130 EFFRTQ  135 (785)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=94.98  E-value=0.037  Score=51.18  Aligned_cols=60  Identities=13%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHhccCCCCCccCCCCCCC--ChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhcc
Q 027177           53 DEEDVISWILKCQDESGGFAGNIGHDP--HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ  113 (227)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~--~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q  113 (227)
                      .-..+++||+..|.+||+|+.......  -+.+|.+|+.+|..-+.. ...+++++.||.+.-
T Consensus        54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~nl  115 (764)
T 3p5p_A           54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG-HSQVQQGAEFIAENL  115 (764)
T ss_dssp             SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence            577899999999999999986432111  378999999888764321 123678888887653

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=94.73  E-value=0.021  Score=52.35  Aligned_cols=60  Identities=18%  Similarity=0.063  Sum_probs=42.1

Q ss_pred             ccHHHHHHHHHhccCCCCCcCCCCCCC-C-chhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177          148 INVDKAVEYIVSCKNLDGGFGCTPGGE-S-HSGQIFCCVGALAIAGALHHVDKDLLGWWLCER  208 (227)
Q Consensus       148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~-~-~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~  208 (227)
                      +....+++||++.|.+||+||....-. . -...|..+|.||..-+. .+..+++++.||.++
T Consensus        50 p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~n  111 (727)
T 3pya_A           50 PAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL-FPHQCNKGITFFREN  111 (727)
T ss_dssp             BSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            345789999999999999999532111 1 24568888888876442 233578899999775

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=94.59  E-value=0.024  Score=52.38  Aligned_cols=61  Identities=16%  Similarity=0.141  Sum_probs=42.7

Q ss_pred             cccHHHHHHHHHhccCCCCCcCCCCCCC-C-chhhchHHHHHHHHhcCCCCCCHHHHHHHHHcc
Q 027177          147 KINVDKAVEYIVSCKNLDGGFGCTPGGE-S-HSGQIFCCVGALAIAGALHHVDKDLLGWWLCER  208 (227)
Q Consensus       147 ~~~~~~~~~~l~~~Q~~dGGf~~~~~~~-~-~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~  208 (227)
                      .+....+++||++.|.+||+||...... . -...|..+|.||..-+. .+..+++++.||.++
T Consensus        52 ~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n  114 (764)
T 3p5p_A           52 KPRFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKT-GHSQVQQGAEFIAEN  114 (764)
T ss_dssp             EESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            3456789999999999999999532211 1 24567778888777442 233578899998765

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=89.54  E-value=2.5  Score=36.53  Aligned_cols=164  Identities=12%  Similarity=0.032  Sum_probs=82.4

Q ss_pred             CHHHHHHHHHhcc--CCCCCccCCCCCCC--ChHHHHHHHHHHHhcccCCC-C---CHHHH----HHHHHhccCC-CCCc
Q 027177           53 DEEDVISWILKCQ--DESGGFAGNIGHDP--HVLYTLSAVQVLALFDKVDI-L---DADKV----SNYIVGLQNE-DGSF  119 (227)
Q Consensus        53 ~~~~~i~~l~~~q--~~dGgf~~~~~~~~--~~~~T~~al~~L~~l~~~~~-~---~~~~~----~~~l~~~Q~~-dGg~  119 (227)
                      ...+..+||.+.+  .++|||.-......  .+...+.++-.|..+..... .   -.+.+    ..+.+.++.+ +|-|
T Consensus       169 ~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~  248 (445)
T 3k11_A          169 LIQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLY  248 (445)
T ss_dssp             HHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEE
T ss_pred             HHHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCE
Confidence            3456778998877  56899876533222  23344455555554433211 0   02222    2233344444 3544


Q ss_pred             ccC---CCCCCC----ccchhHHHHHHH-HhhccC---c------ccHHHHHHHHHhccCCCCCcCCCCCC---CCchhh
Q 027177          120 SGD---IWGEVD----TRFSYIAICCLS-ILQRLD---K------INVDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQ  179 (227)
Q Consensus       120 ~~~---~~~~~d----~~~t~~a~~~L~-~~g~~~---~------~~~~~~~~~l~~~Q~~dGGf~~~~~~---~~~~~~  179 (227)
                      .-.   ..+..+    .|---|++.++. .+..++   .      ...++.++.+.++|.+||.|......   ..+.+.
T Consensus       249 ~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSa  328 (445)
T 3k11_A          249 RHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSA  328 (445)
T ss_dssp             CSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHH
T ss_pred             eeeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccH
Confidence            311   000111    122223333332 222211   1      23467888999999999999875432   223333


Q ss_pred             chHHHHHH---HHhcCCCC----CCHHHHHHHHHccCccCCCcC
Q 027177          180 IFCCVGAL---AIAGALHH----VDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       180 T~~al~aL---~~~g~~~~----~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                      |+....+|   +..|.++.    ..++++.+-|.++.+++|-..
T Consensus       329 TAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~  372 (445)
T 3k11_A          329 TAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE  372 (445)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence            33333333   34555532    235778889998888887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	2e-92
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	1e-14
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	7e-08
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	3e-07
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	2e-78
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	3e-27
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	6e-26
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	1e-73
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	8e-26
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	1e-25
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	5e-07
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	3e-08
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	8e-04
d2sqca1	352	a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla	0.002

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  272 bits (696), Expect = 2e-92
 Identities = 130/225 (57%), Positives = 173/225 (76%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I 
Sbjct: 11  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 70

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GD
Sbjct: 71  SCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD 130

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           IWGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+C
Sbjct: 131 IWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC 190

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM 227
           C G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV  
Sbjct: 191 CTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCY 235

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.2 bits (169), Expect = 1e-14
 Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K +++++S       F             Y     L I  +L  V+ + +  W+ + Q 
Sbjct: 159 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 218

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
            SGG  G     P V Y+   +  L +  ++  +D +K+ ++I+  Q+E+     D  G+
Sbjct: 219 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGD 278

Query: 127 -VDTRFSYIAICCLSILQ--RLDKIN 149
            VD   +   I  LS+L   ++  ++
Sbjct: 279 MVDPFHTLFGIAGLSLLGEEQIKPVS 304

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (118), Expect = 7e-08
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDPHVLYTLSAVQVLAL 93
            ++W L +L I+G+L  +D E + S+IL CQD E+GGFA   G      +TL  +  L+L
Sbjct: 235 YSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSL 294

Query: 94  FDKVDILDADKVSN 107
             +  I     V  
Sbjct: 295 LGEEQIKPVSPVFC 308

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 13/82 (15%), Positives = 35/82 (42%)

Query: 146 DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWL 205
           D + ++K  +YI S  +    +            ++  +  + + G LH ++K+ +  ++
Sbjct: 10  DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFI 69

Query: 206 CERQVKSGGLNGRPEKLPDVVM 227
              Q + GG++      P ++ 
Sbjct: 70  KSCQHECGGVSASIGHDPHLLY 91

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  239 bits (610), Expect = 2e-78
 Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 8/229 (3%)

Query: 3   ELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILG-KLDAVDEEDVISW 60
            L  +KH  Y+   + +  D++E   ++  R    YW L +L++L   +  +   DV  +
Sbjct: 52  VLQREKHFHYLKRGLRQLTDAYEC--LDASRPWLCYWILHSLELLDEPIPQIVATDVCQF 109

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDG 117
           +  CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DG
Sbjct: 110 LELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDG 169

Query: 118 SFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHS 177
           SF   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H 
Sbjct: 170 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 229

Query: 178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDV 225
           G  FC + AL I      ++   L  W+  RQ++  GG  GR  KL D 
Sbjct: 230 GYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDG 278

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 3e-27
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 18/207 (8%)

Query: 37  YWGLTTLDILGKLDAVDEED---VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLAL 93
           Y  +  L I+G  +A D  +   ++ ++   +   G F  ++G +  V     A  V +L
Sbjct: 134 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 193

Query: 94  FDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA 153
            + +     +  + +I   QN +G   G    E    +++  +  L IL+R   +N+   
Sbjct: 194 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 253

Query: 154 VEYIVSC-KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD------------- 199
           ++++ S     +GGF             F   G L +     H   D             
Sbjct: 254 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 313

Query: 200 -LLGWWLCERQVKSGGLNGRPEKLPDV 225
            L  + L   Q  +GGL  +P K  D 
Sbjct: 314 ALQEYILMCCQCPAGGLLDKPGKSRDF 340

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 6e-26
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K ++Y+ S+++   SF   V   + +  AY   +   +   +     E    WI +CQ+
Sbjct: 155 EKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQN 214

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWG 125
             GG  G  G + H  YT   +  L +  +   L+   +  ++   Q   +G F G    
Sbjct: 215 WEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNK 274

Query: 126 EVDTRFSYIAICCLSILQRLDK-------------INVDKAVEYIVSC-KNLDGGFGCTP 171
            VD  +S+     L +L R                 +     EYI+ C +   GG    P
Sbjct: 275 LVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKP 334

Query: 172 GGES---HSGQIFCCVGALAIAG 191
           G      H+     C+  L+IA 
Sbjct: 335 GKSRDFYHT---CYCLSGLSIAQ 354

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  225 bits (574), Expect = 1e-73
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 37/256 (14%)

Query: 3   ELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI 61
           +   D+HV++    ++   + + S  +E  RL  A++ L+ LD+L  LD V+++D+I WI
Sbjct: 2   DFLRDRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWI 59

Query: 62  LKCQ--------------------------DESGGFAGNIGHDPHVLYTLSAVQVLA-LF 94
              Q                                  +     H+  T + +  L  L 
Sbjct: 60  YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 119

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSYIAICCLSILQRLDKINVDKA 153
           D +  +D +     +  LQ EDGSF       E D RF Y A C   +L     +++ KA
Sbjct: 120 DDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKA 179

Query: 154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ 209
           + YI    + D G     G ESH G  FC + +L + G L  V    + + +  W   RQ
Sbjct: 180 ISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 239

Query: 210 VKSGGLNGRPEKLPDV 225
               G +GRP K  D 
Sbjct: 240 --QNGYHGRPNKPVDT 253

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (250), Expect = 8e-26
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)

Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALF 94
           Y GL+ L ILG  L  VD+E  ++ +   Q E G F     G +  + +   A  +  + 
Sbjct: 109 YTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYML 168

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           +    +D  K  +YI    + D   +     E     ++  I  L ++ +L+++  +K +
Sbjct: 169 NNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKEL 228

Query: 155 EYIVS--CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL-GWWLCERQVK 211
             I          G+   P     +   F     L +     + + +    + L  +   
Sbjct: 229 NRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRL 288

Query: 212 SGGLNGRPEKLPDV 225
            GG    P+  PD 
Sbjct: 289 VGGFAKWPDSHPDA 302

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 1e-25
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 14/200 (7%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVV---MEHLRLNGAYWGLTTLDILGKLDAVDEEDV 57
           +  +  +  +  + +++ +  SF +V       +R    Y       +L     +D +  
Sbjct: 122 LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMR--FVYCASCICYMLNNWSGMDMKKA 179

Query: 58  ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG--LQNE 115
           IS+I +      G A   G + H   T   +  L L  K++ + ++K  N I    +  +
Sbjct: 180 ISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 239

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGFGCTPGGE 174
              + G     VDT +S+     L +L+     N +K   YI+S ++ L GGF   P   
Sbjct: 240 QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSH 299

Query: 175 S---HSGQIFCCVGALAIAG 191
               H+   +  +  L++  
Sbjct: 300 PDALHA---YFGICGLSLME 316

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDP---HVLYTLSAVQVL 91
           ++W   TL +L      + E   ++IL  QD   GGFA      P   H  + +     L
Sbjct: 256 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICG---L 312

Query: 92  ALFDKVDILDADKVSN 107
           +L ++  I       N
Sbjct: 313 SLMEESGICKVHPALN 328

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 49/205 (23%)

Query: 56  DVISWILKCQDESGGFA--------------------GNIGHDPHVLY-TLSAVQVLALF 94
           D ++ +L  ++  GGFA                    G+I  D   +  T + +Q L  F
Sbjct: 201 DAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYF 260

Query: 95  DK--------VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD 146
            K               +   +    Q  DGS+ G  WG   T  ++  +   + + +  
Sbjct: 261 HKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQTY 319

Query: 147 KIN-----VDKAVEYIVSCKNLDGGF----------GCTPGGESHSGQIFCCVGALAIAG 191
           +       V +A ++++S +  DGG+                +S        +  L    
Sbjct: 320 RDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVR 379

Query: 192 ALHH--VDKDLLGWWLCERQVKSGG 214
                  ++ +    L E+Q+ +G 
Sbjct: 380 HPDIEAQERGVR--CLLEKQLPNGD 402

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 17/147 (11%), Positives = 45/147 (30%), Gaps = 16/147 (10%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF- 94
            Y+     +             + +  + Q   G + G+         T   ++  A   
Sbjct: 258 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMG 316

Query: 95  ----DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY----------IAICCLS 140
               D     +  +  ++++  Q  DG +  D     + R+             A+  L 
Sbjct: 317 QTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLM 376

Query: 141 ILQRLDKINVDKAVEYIVSCKNLDGGF 167
            ++  D    ++ V  ++  +  +G +
Sbjct: 377 AVRHPDIEAQERGVRCLLEKQLPNGDW 403

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 55  EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVS-NYIVGLQ 113
              + ++ + Q   G + G      ++  T + V  L            + + +++   Q
Sbjct: 191 RRAVEYLKREQKPDGSWFGR-WGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQ 249

Query: 114 NEDGSFSGDIWGEVDTRF----------SYIAICCLSILQRLDKINVDKAVEYIVSCKNL 163
           N DG +  D     D  +          +  A+  L    R +     + V+Y+V  +  
Sbjct: 250 NPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP 309

Query: 164 DGGF 167
           DGG+
Sbjct: 310 DGGW 313

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.96
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.95
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.95
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.88
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.69
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.52
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	99.38
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	99.17
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	99.07
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	99.03
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.83
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.75
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.49
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	98.42
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.36
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	97.94
d1lf6a1	397	Bacterial glucoamylase, C-terminal domain {Thermoa	84.62
d1lf6a1	397	Bacterial glucoamylase, C-terminal domain {Thermoa	81.98

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-54  Score=363.54  Aligned_cols=225  Identities=58%  Similarity=1.139  Sum_probs=214.2

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (227)
                      .+++++|++||+++.....++.++..++++++.+||++.+|++|+..++.+++++++||.++|++||||++.++..+|+.
T Consensus        11 ~l~~~~H~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~sL~lLg~l~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l~   90 (325)
T d3dssb1          11 TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLL   90 (325)
T ss_dssp             SCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHH
T ss_pred             HHHHHHHHHHHHHhcccCCCccceehhhhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCCCCcCCCCCCcccHH
Confidence            68999999999998665567777788899999999999999999987777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~  162 (227)
                      .|++|+.+|.+++..+.++++++++||+++|++||||...+++++|+++||+|+.++.+++..+.++++++++||++||+
T Consensus        91 ~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQn  170 (325)
T d3dssb1          91 YTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN  170 (325)
T ss_dssp             HHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcC
Confidence            99999999999988888999999999999999999999989999999999999999999998888899999999999999


Q ss_pred             CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCCCCCCCCCCC
Q 027177          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~k~~D~cy  227 (227)
                      +||||+..|+.|+|+.+|+||+++|.+++.++..+.+++++||.+||.++|||+|||||++|+||
T Consensus       171 ~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cy  235 (325)
T d3dssb1         171 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCY  235 (325)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHH
T ss_pred             CcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHH
Confidence            99999999999999999999999999999888889999999999999999999999999999998

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-53  Score=361.85  Aligned_cols=223  Identities=32%  Similarity=0.566  Sum_probs=205.7

Q ss_pred             cccHHHHHHHHHHccc-CCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177            3 ELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (227)
                      .|.+++|++|++++-. -+.+|.  ..+.+++|.+||++.+|.+|+.. ++..++++++||.++|+++|||++.++..+|
T Consensus        52 ~L~r~~H~~y~~~~L~~lp~~~~--~lD~~r~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~h  129 (401)
T d2h6fb1          52 VLQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH  129 (401)
T ss_dssp             CCCHHHHHHHHHHHTTEECGGGG--GGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred             cccHHHHHHHHHHHHHhCCHHhh--ccccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCCCcc
Confidence            5889999999998743 334444  45799999999999999999975 3346789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccc---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHH
Q 027177           81 VLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI  157 (227)
Q Consensus        81 ~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l  157 (227)
                      +.+|++|+.+|.+++.   ++.+|++++++||.++|++||+|...++++.|+++||||++++.+++.+..+.++++++||
T Consensus       130 la~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I  209 (401)
T d2h6fb1         130 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI  209 (401)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred             hHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999985   4678899999999999999999999999999999999999999999998888899999999


Q ss_pred             HhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCcc-CCCcCCCCCCCCCCCC
Q 027177          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVVM  227 (227)
Q Consensus       158 ~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~-~GGf~~~~~k~~D~cy  227 (227)
                      ++||+.||||+..|+.|+|+.+|||||++|.+++.++.++++++++||.+||.+ +|||+|||||++|+||
T Consensus       210 ~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CY  280 (401)
T d2h6fb1         210 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCY  280 (401)
T ss_dssp             HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTH
T ss_pred             HHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHH
Confidence            999999999999999999999999999999999999889999999999999976 8999999999999998

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-49  Score=330.88  Aligned_cols=222  Identities=30%  Similarity=0.502  Sum_probs=194.3

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCC---------CCc--
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES---------GGF--   71 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~d---------Ggf--   71 (227)
                      .+.+++|++|++++... -+..+...+.+++|.+||+|.+|++|+..+...+++.++||.++|..+         |||  
T Consensus         2 ~f~~~kH~~y~~~~l~~-lp~~~~~~D~~R~~~~Yw~l~sL~lL~~l~~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~g   80 (346)
T d1n4qb_           2 DFLRDRHVRFFQRCLQV-LPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRG   80 (346)
T ss_dssp             CCCHHHHHHHHHHHHHE-ECGGGGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECS
T ss_pred             cccHHHHHHHHHHHHhc-CCHHHHHHHhhhHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhccccccccCccccCccC
Confidence            57899999999987443 223444557999999999999999999877778999999999999543         233  


Q ss_pred             ---------------cCCCCCCCChHHHHHHHHHHHhccc-CCCCCHHHHHHHHHhccCCCCCcccCC-CCCCCccchhH
Q 027177           72 ---------------AGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYI  134 (227)
Q Consensus        72 ---------------~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGg~~~~~-~~~~d~~~t~~  134 (227)
                                     +..+.+.+|+.+||+|+.+|.+++. ++.+|++++.+||.++|++||+|.... +++.|+++|||
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~  160 (346)
T d1n4qb_          81 SSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYC  160 (346)
T ss_dssp             SSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHH
T ss_pred             cccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHHHHH
Confidence                           2334467899999999999999975 577899999999999999999997654 56999999999


Q ss_pred             HHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCC----CHHHHHHHHHccCc
Q 027177          135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQV  210 (227)
Q Consensus       135 a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~----~~~~~~~wL~~~Q~  210 (227)
                      |++++.+++..+.++++++++||++||+.||||+..|+.|+|+.+|||||++|.+++.++.+    +++++++||.+|| 
T Consensus       161 A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~~~~~~~~~l~~WL~~Rq-  239 (346)
T d1n4qb_         161 ASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ-  239 (346)
T ss_dssp             HHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB-
T ss_pred             HHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhcc-
Confidence            99999999998889999999999999999999999999999999999999999999986433    5789999999999 


Q ss_pred             cCCCcCCCCCCCCCCCC
Q 027177          211 KSGGLNGRPEKLPDVVM  227 (227)
Q Consensus       211 ~~GGf~~~~~k~~D~cy  227 (227)
                       +|||+|||||++|+||
T Consensus       240 -~gGf~GR~nK~~D~CY  255 (346)
T d1n4qb_         240 -QNGYHGRPNKPVDTCY  255 (346)
T ss_dssp             -SSSBCSSTTSCCCTTH
T ss_pred             -cCCcCCCCCCccchHH
Confidence             8999999999999998

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-43  Score=295.07  Aligned_cols=223  Identities=21%  Similarity=0.356  Sum_probs=210.8

Q ss_pred             cccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChH
Q 027177            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (227)
                      +.++++.++||+++|++||+|+...++.+++..||+++.+|.+++..+.++++++++||+++|++||||...++.++++.
T Consensus        59 ~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l~~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r  138 (325)
T d3dssb1          59 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR  138 (325)
T ss_dssp             GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHH
Confidence            56889999999999999999998888888999999999999999887677999999999999999999999888899999


Q ss_pred             HHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhccC
Q 027177           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (227)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~  162 (227)
                      .||+|+.++.+++..+.++++++++||+++|+.||||+..|..++|..+|||++++|.+++..+..+.+++++|+.++|.
T Consensus       139 ~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~  218 (325)
T d3dssb1         139 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL  218 (325)
T ss_dssp             HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCC
Confidence            99999999999998888889999999999999999999999999999999999999999999888899999999999999


Q ss_pred             CCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccC-ccCCCcCCCCCCCCCC
Q 027177          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDV  225 (227)
Q Consensus       163 ~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q-~~~GGf~~~~~k~~D~  225 (227)
                      ++|||..+|++.+|+.+|||++++|.+++..+.++.+++.+||+++| .+.|||+..|++.||.
T Consensus       219 ~~GGf~GR~~K~~D~cys~W~~~~l~~L~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~  282 (325)
T d3dssb1         219 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDP  282 (325)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBH
T ss_pred             CCCCcCCCCCCCCchHHHHHHHHHHHHcCccccccHHHHHHHHHHHcCCCCCCcCCCCCCCCCh
Confidence            99999999999999999999999999999887789999999999986 6789999999999994

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-41  Score=284.24  Aligned_cols=222  Identities=19%  Similarity=0.283  Sum_probs=204.4

Q ss_pred             ccHHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCCCCCC
Q 027177            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (227)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (227)
                      .++++.++||.++|+++|||+..+++.+.+..||++|.+|.+++..   +.++++++++||.++|++||+|...++.+++
T Consensus       101 ~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D  180 (401)
T d2h6fb1         101 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVD  180 (401)
T ss_dssp             HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBS
T ss_pred             HHHHHHHHHHHHHcCCCCCcCCCCCCCcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCcc
Confidence            4567899999999999999998888888999999999999999974   3468999999999999999999998888999


Q ss_pred             hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhhccCcccHHHHHHHHHhc
Q 027177           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (227)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~~~~~~~~~~~l~~~  160 (227)
                      +..||+|+.++.+++..+..+++++++||+++|+.||||+..|..+++..+|||++++|.+++.++.++++++++||.++
T Consensus       181 ~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~R  260 (401)
T d2h6fb1         181 VRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSR  260 (401)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHc
Confidence            99999999999999988777889999999999999999999999999999999999999999998888999999999999


Q ss_pred             cCC-CCCcCCCCCCCCchhhchHHHHHHHHhcCC-------------CCCCHHHHHHHHHcc-CccCCCcCCCCCCCCCC
Q 027177          161 KNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCER-QVKSGGLNGRPEKLPDV  225 (227)
Q Consensus       161 Q~~-dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-------------~~~~~~~~~~wL~~~-Q~~~GGf~~~~~k~~D~  225 (227)
                      |.+ +|||..++++.+|+.|+||..++|.+++..             ..++.+++.+||+.+ |+++|||+..|+|.||.
T Consensus       261 Q~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~  340 (401)
T d2h6fb1         261 QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF  340 (401)
T ss_dssp             BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred             CCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCc
Confidence            976 899999999999999999999999998742             025789999999886 89999999999999994

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-38  Score=263.93  Aligned_cols=221  Identities=17%  Similarity=0.251  Sum_probs=195.7

Q ss_pred             cccHHHHHHHHHHcccCCCCc--------------------------chhhcccchHHHHHHHHHHHHHhCCC-CCcCHH
Q 027177            3 ELAADKHVKYIISVEKKKDSF--------------------------ESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEE   55 (227)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~--------------------------~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~   55 (227)
                      ..++++.++||.++|.+++++                          +..+.+...+..||++|.+|.+++.. +.++++
T Consensus        49 ~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~gs~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~  128 (346)
T d1n4qb_          49 VVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKE  128 (346)
T ss_dssp             GSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHH
T ss_pred             cccHHHHHHHHHHHhccccccccCccccCccCcccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHHH
Confidence            356889999999998654432                          22233566889999999999999864 457899


Q ss_pred             HHHHHHHhccCCCCCccCC-CCCCCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccchhH
Q 027177           56 DVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI  134 (227)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~  134 (227)
                      ++++||.++|++||+|... .+.++++..||+|+.++.+++..+.++++++++||.+||+.||||+..|..+++..+|||
T Consensus       129 ~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfC  208 (346)
T d1n4qb_         129 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC  208 (346)
T ss_dssp             HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHH
Confidence            9999999999999999754 567999999999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCc----ccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccC-
Q 027177          135 AICCLSILQRLDK----INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-  209 (227)
Q Consensus       135 a~~~L~~~g~~~~----~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q-  209 (227)
                      |+++|.+++..+.    .+++++++||...|  +|||..+|++.+|+.++||..++|.+++..+.++.+++.+||+++| 
T Consensus       209 avasL~ll~~~~~~~~~~~~~~l~~WL~~Rq--~gGf~GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~q  286 (346)
T d1n4qb_         209 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD  286 (346)
T ss_dssp             HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHhcccccccchhhHHHHHHHHHhcc--cCCcCCCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHHHHcC
Confidence            9999999997533    37889999999887  7999999999999999999999999999888889999999999985 


Q ss_pred             ccCCCcCCCCCCCCCC
Q 027177          210 VKSGGLNGRPEKLPDV  225 (227)
Q Consensus       210 ~~~GGf~~~~~k~~D~  225 (227)
                      .+.|||+..|++.||.
T Consensus       287 ~~~GGf~~~p~~~pD~  302 (346)
T d1n4qb_         287 RLVGGFAKWPDSHPDA  302 (346)
T ss_dssp             TTTCSBCSSTTSCCBH
T ss_pred             CCCCCcCCCCCCCCcH
Confidence            6799999999999994

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.96  E-value=1.2e-28  Score=208.02  Aligned_cols=211  Identities=20%  Similarity=0.214  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHccc-------------CCCCcchhhcc--cchHHHHHHHHHHHHHhCCCCC----cCHHHHHHHHHhccC
Q 027177            6 ADKHVKYIISVEK-------------KKDSFESVVME--HLRLNGAYWGLTTLDILGKLDA----VDEEDVISWILKCQD   66 (227)
Q Consensus         6 ~~~~~~yl~~~q~-------------~dg~~~~~~~~--~~~~~~~y~~l~~l~ll~~~~~----~~~~~~i~~l~~~q~   66 (227)
                      ..++++||.+.|.             ++|+|.+....  ..+.-.|..++.+|..+....+    ..++++++||+++||
T Consensus        55 l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn  134 (352)
T d2sqca1          55 LVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS  134 (352)
T ss_dssp             HHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhcCCCCCChhhhcCCCCCCccccccCCCCCCccccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhc
Confidence            4588999999873             24555432111  2233345455666655554432    246789999999999


Q ss_pred             CCCCccCCCC-------------------CCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhccCCCCCcccCCCCC
Q 027177           67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGE  126 (227)
Q Consensus        67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGg~~~~~~~~  126 (227)
                      +||||+.+..                   ..+....|..++.+|...+..+ ...++++++||.+.|++||+|.+ .++.
T Consensus       135 ~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~-~~~~  213 (352)
T d2sqca1         135 SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFG-RWGV  213 (352)
T ss_dssp             TTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCC-SSBS
T ss_pred             CCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccc-cCCC
Confidence            9999985321                   2456778888888888775422 22379999999999999999977 3444


Q ss_pred             CCccchhHHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCCC----------CCCCchhhchHHHHHHHHhcCCCC
Q 027177          127 VDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGALHH  195 (227)
Q Consensus       127 ~d~~~t~~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~~~~~~T~~al~aL~~~g~~~~  195 (227)
                      +.+..|+.++.+|..+|. ...+.++++++||+++|++||||+...          ...+++..|.+++.+|..++..+.
T Consensus       214 ~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~~~  293 (352)
T d2sqca1         214 NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAES  293 (352)
T ss_dssp             SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSS
T ss_pred             CcchHHHHHHHHHHhcccccchHHHHHHHHHHHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCc
Confidence            444456666677777776 345678999999999999999998542          335778899999999999987666


Q ss_pred             CCHHHHHHHHHccCccCCCcCC
Q 027177          196 VDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       196 ~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                      ..++++++||+++|++||+|.-
T Consensus       294 ~~i~ra~~~L~~~Q~~dG~w~~  315 (352)
T d2sqca1         294 EAARRGVQYLVETQRPDGGWDE  315 (352)
T ss_dssp             HHHHHHHHHHHHHCCTTSCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCC
Confidence            6689999999999999999973

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=206.96  Aligned_cols=212  Identities=17%  Similarity=0.205  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHcccCC--------------CCcchhhcc--cchHHHHHHHHHHHHHhCCC-----CC---cCHHHHHHHH
Q 027177            6 ADKHVKYIISVEKKK--------------DSFESVVME--HLRLNGAYWGLTTLDILGKL-----DA---VDEEDVISWI   61 (227)
Q Consensus         6 ~~~~~~yl~~~q~~d--------------g~~~~~~~~--~~~~~~~y~~l~~l~ll~~~-----~~---~~~~~~i~~l   61 (227)
                      ..++.+||+..|..+              |+|.+...+  ..+.=.|.-++.+|.++...     +.   ..+.++++||
T Consensus       127 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wL  206 (448)
T d1w6ka1         127 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL  206 (448)
T ss_dssp             HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCcCCCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHH
Confidence            567889999987532              555432211  12222455677777655321     11   2366899999


Q ss_pred             HhccCCCCCccCCCC---------------------CCCChHHHHHHHHHHHhcccCC-C-------CCHHHHHHHHHhc
Q 027177           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD-I-------LDADKVSNYIVGL  112 (227)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~-~-------~~~~~~~~~l~~~  112 (227)
                      +++||+||||+.+..                     +.+++..|..++.+|..+.... .       ..++++++||++.
T Consensus       207 l~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~  286 (448)
T d1w6ka1         207 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ  286 (448)
T ss_dssp             HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHcc
Confidence            999999999986521                     3467889999999998875421 1       1268899999999


Q ss_pred             cCCCCCcccCCCCCCCccchhHHHHHHHHhhccC-----cccHHHHHHHHHhccCCCCCcCCC----------CCCCCch
Q 027177          113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGGFGCT----------PGGESHS  177 (227)
Q Consensus       113 Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g~~~-----~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~~~~  177 (227)
                      |++||+|.+ .++.+.+..|++++.+|...|...     .+.++|+++||+++|++||||++.          ++..|++
T Consensus       287 Q~~DGsW~g-~wg~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~  365 (448)
T d1w6ka1         287 QRADGSWEG-SWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI  365 (448)
T ss_dssp             SCTTSCCCC-SSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred             CCCCCcccc-cCCCcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcH
Confidence            999999987 466555555667777888877532     346899999999999999999864          3457899


Q ss_pred             hhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCCC
Q 027177          178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       178 ~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      ..|++||.+|..+|..+...++++++||+++|+++|+|.-.
T Consensus       366 ~~TAwAl~aL~~ag~~~~~~v~rgv~~L~~~Q~~~G~W~~~  406 (448)
T d1w6ka1         366 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQE  406 (448)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCC
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCCCCCCCC
Confidence            99999999999998776667999999999999999999643

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.95  E-value=6.8e-27  Score=197.17  Aligned_cols=211  Identities=20%  Similarity=0.138  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHhccC-------------CCCCc
Q 027177            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQD-------------ESGGF   71 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~-~~~~~~~i~~l~~~q~-------------~dGgf   71 (227)
                      ++++++||++.|++||+|...  ..+.+|.|-+++.+|...+.+. ...+.|+++||+++|.             ..|||
T Consensus         8 i~rav~~L~~~q~~dG~w~~~--~~s~vwdTala~~Al~eaG~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw   85 (352)
T d2sqca1           8 LDRAVEYLLSCQKDEGYWWGP--LISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGF   85 (352)
T ss_dssp             HHHHHHHHHHHCCTTSCCCCC--ECCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCB
T ss_pred             HHHHHHHHHHhcCCCCceeCC--CCCcHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCcc
Confidence            578999999999999998522  2356788878887776666543 2357899999999883             24777


Q ss_pred             cCC--CCCCCChHHHHHHHHHHHhcccCCC----CCHHHHHHHHHhccCCCCCcccCCC----------------CCCCc
Q 027177           72 AGN--IGHDPHVLYTLSAVQVLALFDKVDI----LDADKVSNYIVGLQNEDGSFSGDIW----------------GEVDT  129 (227)
Q Consensus        72 ~~~--~~~~~~~~~T~~al~~L~~l~~~~~----~~~~~~~~~l~~~Q~~dGg~~~~~~----------------~~~d~  129 (227)
                      +..  ....++...|..++.+|..+....+    ..++++++||.++|++||||+....                ...|.
T Consensus        86 ~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~  165 (352)
T d2sqca1          86 AFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDP  165 (352)
T ss_dssp             CSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCC
T ss_pred             ccccCCCCCCccccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCC
Confidence            653  2345778888888888876643221    1257899999999999999974210                01123


Q ss_pred             cchhHHHHHHHHh---hc-cCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC-CCCCHHHHHHH
Q 027177          130 RFSYIAICCLSIL---QR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWW  204 (227)
Q Consensus       130 ~~t~~a~~~L~~~---g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-~~~~~~~~~~w  204 (227)
                      .++.++..+|..+   +. .....|+++++||+++|++||+|..+++ .++.+.|++++.+|..+|.. +.+.++++++|
T Consensus       166 ~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~-~~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~  244 (352)
T d2sqca1         166 PSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDW  244 (352)
T ss_dssp             CBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccCC-CCcchHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            3334444444433   33 2345799999999999999999987655 47788999999999999863 33458999999


Q ss_pred             HHccCccCCCcCCCC
Q 027177          205 LCERQVKSGGLNGRP  219 (227)
Q Consensus       205 L~~~Q~~~GGf~~~~  219 (227)
                      |+++|++||||+..+
T Consensus       245 L~~~Q~~dGgWg~~~  259 (352)
T d2sqca1         245 VEQHQNPDGGWGEDC  259 (352)
T ss_dssp             HHHTCCTTSCCCCCG
T ss_pred             HHhccCCCCCcccCc
Confidence            999999999997543

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-21  Score=168.99  Aligned_cols=210  Identities=13%  Similarity=0.160  Sum_probs=149.5

Q ss_pred             HHHHHHHHcccCCCCcchhhcc---cchHHHHHHHHHHHHHhCCC-C---CcCHHHHHHHHHhccCCC------------
Q 027177            8 KHVKYIISVEKKKDSFESVVME---HLRLNGAYWGLTTLDILGKL-D---AVDEEDVISWILKCQDES------------   68 (227)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~---~~~~~~~y~~l~~l~ll~~~-~---~~~~~~~i~~l~~~q~~d------------   68 (227)
                      +.+.|+...|.+||+|.....+   -+.+|.|-+++.+|.-.+.. .   ...++++.+||+..|..+            
T Consensus        74 ~~~~~~~~~~~edg~w~~~~~~~~~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~  153 (448)
T d1w6ka1          74 NGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQM  153 (448)
T ss_dssp             HHHHHHHTTBCTTSCBCCCCCCSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCC
T ss_pred             hhhhHhhccccCCCchhHhhcCCCCCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcCCCcchhhcCCC
Confidence            4455777889999998532222   36789998888888766532 1   124789999999988532            


Q ss_pred             --CCccCC--CCCCCChHHHHHHHHHHHhcccC-----CCCC---HHHHHHHHHhccCCCCCcccCCC------------
Q 027177           69 --GGFAGN--IGHDPHVLYTLSAVQVLALFDKV-----DILD---ADKVSNYIVGLQNEDGSFSGDIW------------  124 (227)
Q Consensus        69 --Ggf~~~--~~~~~~~~~T~~al~~L~~l~~~-----~~~~---~~~~~~~l~~~Q~~dGg~~~~~~------------  124 (227)
                        |||+..  +...+++..|..+|.+|..+...     +.++   +.++++||.++|++||||.....            
T Consensus       154 ~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~  233 (448)
T d1w6ka1         154 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNP  233 (448)
T ss_dssp             CTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCC
T ss_pred             CCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccc
Confidence              566653  23457889999999988766321     2222   56799999999999999984310            


Q ss_pred             ------CCCCccc---hhHHHHHHHHhhcc--C------cccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHH
Q 027177          125 ------GEVDTRF---SYIAICCLSILQRL--D------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL  187 (227)
Q Consensus       125 ------~~~d~~~---t~~a~~~L~~~g~~--~------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL  187 (227)
                            -..|..+   |..++.+|..++..  +      ...++++++||++.|++||||...++ ..+.+.|++++.+|
T Consensus       234 ~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~wg-~~~~ygT~~al~aL  312 (448)
T d1w6ka1         234 SEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAF  312 (448)
T ss_dssp             CSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHH
T ss_pred             hhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCCCCCcccccCC-CcccHHHHHHHHHH
Confidence                  1123344   44444455555431  1      23588999999999999999988765 46788999999999


Q ss_pred             HHhcCCCC-----CCHHHHHHHHHccCccCCCcCCC
Q 027177          188 AIAGALHH-----VDKDLLGWWLCERQVKSGGLNGR  218 (227)
Q Consensus       188 ~~~g~~~~-----~~~~~~~~wL~~~Q~~~GGf~~~  218 (227)
                      ..+|....     +.++++++||+++|++||||+..
T Consensus       313 ~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~  348 (448)
T d1w6ka1         313 ACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGED  348 (448)
T ss_dssp             HHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBC
T ss_pred             HHhCcCcccccccHHHHHHHHHHHhccCCCCCccCC
Confidence            99986421     23899999999999999999753

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.69  E-value=8.4e-17  Score=130.12  Aligned_cols=201  Identities=13%  Similarity=0.063  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCC--------------
Q 027177            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGG--------------   70 (227)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGg--------------   70 (227)
                      +++.++||.+.|++||+|+.+...++++..|.-++.+|.+++.. +....+++.+||++.....+.              
T Consensus        25 ~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i~~~GG~~~~~~~~k~~LA~~G~~  104 (271)
T d2sqca2          25 MEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEY  104 (271)
T ss_dssp             HHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCcccCchHHHHHHHhcCCC
Confidence            56889999999999999998877788898998899999999864 334688999999998532211              


Q ss_pred             -ccCCCCCC-----------CC-------hHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCccc
Q 027177           71 -FAGNIGHD-----------PH-------VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF  131 (227)
Q Consensus        71 -f~~~~~~~-----------~~-------~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~  131 (227)
                       |...+..+           -|       ...++..+..+..-......+....+++|...|.+++.|.....    ..+
T Consensus       105 ~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~eL~~~~~~~~~~~~~~~----~~~  180 (271)
T d2sqca2         105 PWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGG----GGW  180 (271)
T ss_dssp             CGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGGGCCSSCCCCCCCTTC----CCH
T ss_pred             CccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHHHhcCCCcccccccccc----ccH
Confidence             01111100           01       12222222222222222233344567888888989988866322    234


Q ss_pred             hhHHH-HHHHHhhc-----cCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCCCCCCHHHHHHHH
Q 027177          132 SYIAI-CCLSILQR-----LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWL  205 (227)
Q Consensus       132 t~~a~-~~L~~~g~-----~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL  205 (227)
                      .|-++ .+|..+..     +....++++++||++.|++||||+..      ...|.+++.+|..+|..+++.+++++++|
T Consensus       181 ~~~~~~~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgwG~i------~p~~~~~l~aL~~~G~~~~p~v~r~l~~l  254 (271)
T d2sqca2         181 IFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGI------QPPWFYALIALKILDMTQHPAFIKGWEGL  254 (271)
T ss_dssp             HHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSSTTS------HHHHHHHHHHHHHTTCTTSHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCcccc------CHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            44322 33333322     22456889999999999999999832      23478999999999987777899999999


Q ss_pred             Hc--cCccCCCcC
Q 027177          206 CE--RQVKSGGLN  216 (227)
Q Consensus       206 ~~--~Q~~~GGf~  216 (227)
                      .+  -|.+||++-
T Consensus       255 ~~~~~~~~dG~~~  267 (271)
T d2sqca2         255 ELYGVELDYGGWM  267 (271)
T ss_dssp             GGGEEECTTSCEE
T ss_pred             HHheeEcCCCcee
Confidence            76  478899874

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.52  E-value=2.1e-14  Score=115.77  Aligned_cols=182  Identities=20%  Similarity=0.172  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCC-CCCHHHHHHHHHhc
Q 027177           34 NGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGL  112 (227)
Q Consensus        34 ~~~y~~l~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~  112 (227)
                      ..+.-.|..+.+++..+...++++++||++.|++||||+..++..+++..|..++.+|..++... .....|+.+||.+.
T Consensus         5 ~~~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i~~~   84 (271)
T d2sqca2           5 TMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQ   84 (271)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Confidence            34556788899999766567889999999999999999988888999999999999999987432 22378999999998


Q ss_pred             cCCCCC--c--------ccCCCC----------------CCCc-cchhH--HHHH-HH-Hhhc--cCcccHHHHHHHHHh
Q 027177          113 QNEDGS--F--------SGDIWG----------------EVDT-RFSYI--AICC-LS-ILQR--LDKINVDKAVEYIVS  159 (227)
Q Consensus       113 Q~~dGg--~--------~~~~~~----------------~~d~-~~t~~--a~~~-L~-~~g~--~~~~~~~~~~~~l~~  159 (227)
                      +-..+.  |        +..++.                .-++ ...++  ++.. +. +.+.  .........+++|..
T Consensus        85 GG~~~~~~~~k~~LA~~G~~~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~eL~~  164 (271)
T d2sqca2          85 GGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYE  164 (271)
T ss_dssp             TCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGGGC
T ss_pred             CCcccCchHHHHHHHhcCCCCccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHHHhc
Confidence            432211  1        111110                0011 11111  1111 11 1122  122233446788888


Q ss_pred             ccCCCCCcCCCCCCCCchhhchHHHHHH-HHhcCCCC---CCHHHHHHHHHccCccCCCcCC
Q 027177          160 CKNLDGGFGCTPGGESHSGQIFCCVGAL-AIAGALHH---VDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       160 ~Q~~dGGf~~~~~~~~~~~~T~~al~aL-~~~g~~~~---~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                      .|.+++.|...... +....+..++..+ ..+. ..+   ..++++++||+++|+++|||++
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~e~l~-~~~lr~~a~~~a~~wl~~~q~~dGgwG~  224 (271)
T d2sqca2         165 TDVPPRRRGAKGGG-GWIFDALDRALHGYQKLS-VHPFRRAAEIRALDWLLERQAGDGSWGG  224 (271)
T ss_dssp             CSSCCCCCCCTTCC-CHHHHHHHHHHHHHHHSS-CCTTHHHHHHHHHHHHHHHCCTTSSSTT
T ss_pred             CCCccccccccccc-cHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHHHccCCCCccc
Confidence            89999998765432 3333333333322 2222 222   2368899999999999999975

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.8e-12  Score=106.71  Aligned_cols=199  Identities=15%  Similarity=0.108  Sum_probs=122.1

Q ss_pred             HHHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCC---CCcCHHHHHHHHHhccCCCCCccCCCC-------
Q 027177            7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIG-------   76 (227)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~-------   76 (227)
                      +++++=|.+.|++||||+.|++.+.+.|.|-|++.+|..+...   ++..+.+.+.|+++.|..+|+|.....       
T Consensus        55 ~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~~  134 (326)
T d1hzfa_          55 QKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQ  134 (326)
T ss_dssp             HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccccccccCHHHh
Confidence            3444555667999999999998888899999999999998763   234677899999999999999865321       


Q ss_pred             -----CCCChHHHHHHHHHHHhcccCC--CC----------CHHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHH
Q 027177           77 -----HDPHVLYTLSAVQVLALFDKVD--IL----------DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCL  139 (227)
Q Consensus        77 -----~~~~~~~T~~al~~L~~l~~~~--~~----------~~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L  139 (227)
                           ....+..|.+++.+|...+...  ..          .+.++++||.+....+         ..++.....+..+|
T Consensus       135 ~~~~~~~~~~~~tAyvl~aL~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~~~~~~~---------~~~~y~~a~~a~al  205 (326)
T d1hzfa_         135 GGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAG---------LLGAHAAAITAYAL  205 (326)
T ss_dssp             GGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---------CCCHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHcccccccchhhhhHhhHHHHHHHHHHHHHHHhhcc---------cCCHHHHHHHHHHH
Confidence                 1223556777777776654321  11          1467888887764221         11111112233445


Q ss_pred             HHhhccCcccHHHHHHHHHhccC-CCCC--cCCCCC----------------------CCCchhhchHHHHHHHHhcCCC
Q 027177          140 SILQRLDKINVDKAVEYIVSCKN-LDGG--FGCTPG----------------------GESHSGQIFCCVGALAIAGALH  194 (227)
Q Consensus       140 ~~~g~~~~~~~~~~~~~l~~~Q~-~dGG--f~~~~~----------------------~~~~~~~T~~al~aL~~~g~~~  194 (227)
                      .+.|.. ......+..-+.+... .+++  |....+                      ....++.|+++|.++.... .+
T Consensus       206 ~~~~~~-~~~~~~~~~~l~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iettayaLla~~~~~-~~  283 (326)
T d1hzfa_         206 TLTKAP-ADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHE-GK  283 (326)
T ss_dssp             HHTTCC-HHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHT-CS
T ss_pred             HHcCCc-hHHHHHHHHHHHHHHhhccccceecccccccccccccccccccCCCCCcccchHHHHHHHHHHHHHHhcC-CC
Confidence            555542 1112223333333222 2222  111110                      1124678899998887654 33


Q ss_pred             CCCHHHHHHHHHccCccCCCcC
Q 027177          195 HVDKDLLGWWLCERQVKSGGLN  216 (227)
Q Consensus       195 ~~~~~~~~~wL~~~Q~~~GGf~  216 (227)
                      ...++++++||+++|+.+|||.
T Consensus       284 ~~~~~~~~~WL~~qr~~~Ggw~  305 (326)
T d1hzfa_         284 AEMADQASAWLTRQGSFQGGFR  305 (326)
T ss_dssp             SHHHHHHHHHHHHHTTSTTCSC
T ss_pred             chhHHHHHHHHHHhccCCCCCc
Confidence            4457899999999999999995

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=99.17  E-value=9.6e-11  Score=98.02  Aligned_cols=166  Identities=15%  Similarity=0.067  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHhccCCCCCccCCCC--------------------------------------CCCChHHHHHHHHHHHhc
Q 027177           53 DEEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALF   94 (227)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l   94 (227)
                      .-+++++.|++.|+++|||.-...                                      ..-+-..|..+|..|..+
T Consensus        82 eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~  161 (408)
T d1r76a_          82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV  161 (408)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHH
Confidence            456899999999999999953110                                      001112466777777655


Q ss_pred             ccC--CCC------CHHHHHHHHHhccCCCCCcccC-CCCCCCc-cchh---H---HHHHHHHhhc-------cC-----
Q 027177           95 DKV--DIL------DADKVSNYIVGLQNEDGSFSGD-IWGEVDT-RFSY---I---AICCLSILQR-------LD-----  146 (227)
Q Consensus        95 ~~~--~~~------~~~~~~~~l~~~Q~~dGg~~~~-~~~~~d~-~~t~---~---a~~~L~~~g~-------~~-----  146 (227)
                      -..  +.-      ...++++||++.|++||||... +...... ..||   .   ++.+|..+..       ++     
T Consensus       162 ~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r~  241 (408)
T d1r76a_         162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRT  241 (408)
T ss_dssp             HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred             HHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHHH
Confidence            321  110      1578999999999999999863 1111000 1111   1   2223322211       01     


Q ss_pred             --cccHHHHHHHHHhccCCCCCcCCCCCCCCc---------------hhhchHHHHHHHHhcCCCCC------CHHHHHH
Q 027177          147 --KINVDKAVEYIVSCKNLDGGFGCTPGGESH---------------SGQIFCCVGALAIAGALHHV------DKDLLGW  203 (227)
Q Consensus       147 --~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~---------------~~~T~~al~aL~~~g~~~~~------~~~~~~~  203 (227)
                        ...++|+++||+++|.++|||...++...|               ...+.-.+..+..|..+..+      .+++++.
T Consensus       242 r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av~  321 (408)
T d1r76a_         242 RALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVA  321 (408)
T ss_dssp             HHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChhHHHHHHHHHH
Confidence              235789999999999999998665542111               01112223333333332222      3788999


Q ss_pred             HHHccCccCCCcCCC
Q 027177          204 WLCERQVKSGGLNGR  218 (227)
Q Consensus       204 wL~~~Q~~~GGf~~~  218 (227)
                      ||.+.|..+++|...
T Consensus       322 Wl~~~~~~~~~~~~~  336 (408)
T d1r76a_         322 WLNTSVIRDRAWVKS  336 (408)
T ss_dssp             HHHHSCCCC------
T ss_pred             HHHhcccCCceeeec
Confidence            999999999998544

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.8e-09  Score=84.86  Aligned_cols=193  Identities=13%  Similarity=0.091  Sum_probs=111.3

Q ss_pred             HHHHHHHHcccCCCCcchhhcccchHHHHHHHHHHHHHhCCCC---CcCHHH-HHHHHHhccCCCCCccCCCC-------
Q 027177            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEED-VISWILKCQDESGGFAGNIG-------   76 (227)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~~l~~l~ll~~~~---~~~~~~-~i~~l~~~q~~dGgf~~~~~-------   76 (227)
                      ++++=|.+.|++||+|+.|++...+.|.|-|++..|..+....   +..+.+ ...++.+.|..+|.|-....       
T Consensus        58 ~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~~  137 (294)
T d1c3da_          58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI  137 (294)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccccchHhHHHHh
Confidence            4444455569999999999888888999999999999987642   223334 44455567777776643210       


Q ss_pred             ------CCCChHHHHHHHHHHHhcccC--CCCC-----HHHHHHHHHhccCCCCCcccCCCCCCCccchhHHHHHHHHhh
Q 027177           77 ------HDPHVLYTLSAVQVLALFDKV--DILD-----ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (227)
Q Consensus        77 ------~~~~~~~T~~al~~L~~l~~~--~~~~-----~~~~~~~l~~~Q~~dGg~~~~~~~~~d~~~t~~a~~~L~~~g  143 (227)
                            ....+..|.+++.+|...+..  ..++     +.++..|+......             ....+....+...+.
T Consensus       138 ~~~~~~~~~~~~~~ay~~~~L~~~~~~~~~~~~~~~~~~~ka~~~l~~~~~~-------------~~~~~~la~~~~~l~  204 (294)
T d1c3da_         138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN-------------LQRSYTVAIAGYALA  204 (294)
T ss_dssp             GGGGSCTTHHHHHHHHHHHHHHHTHHHHTTTCTTHHHHHHHHHHHHHHHGGG-------------CCCHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhc-------------ccCHHHHHHHHHHHH
Confidence                  122345666777777665432  1111     45667777654211             111222111111222


Q ss_pred             ccCcccHHHHHHHHHhccCCCCCcCCCCCC-CCchhhchHHHHHHHHhcCCCCCCHHHHHHHHHccCccCCCcCC
Q 027177          144 RLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       144 ~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~-~~~~~~T~~al~aL~~~g~~~~~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                      .......+ ...-+.... +++.|...++. ..++..|.++|.++...+.  ...++++++||+++++.+|||.-
T Consensus       205 ~~~~~~~~-~~~~~~~~~-~~~~~w~~~~~~~~~ietta~alla~~~~~~--~~~~~~~~~wL~~qr~~~g~w~S  275 (294)
T d1c3da_         205 QMGRLKGP-LLNKFLTTA-KDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS  275 (294)
T ss_dssp             HTTCCCHH-HHHHHHHHS-BTTTBCCCSSCHHHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHHTTCCCCSTTC
T ss_pred             HhHHHHHH-HHHHHHHhc-ccCCCCCCCCCccchHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHcccCCCCCcc
Confidence            11122222 223332222 34544433332 3456778889888877653  34588999999999999999963

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=99.03  E-value=1.1e-10  Score=94.65  Aligned_cols=158  Identities=16%  Similarity=0.171  Sum_probs=89.9

Q ss_pred             HHHHHHHhccCCCCCccCCC--------C-C--CC--ChHHHHHHHHHHHhcccC--C---CCCHHHHHHHHHhccCCCC
Q 027177           56 DVISWILKCQDESGGFAGNI--------G-H--DP--HVLYTLSAVQVLALFDKV--D---ILDADKVSNYIVGLQNEDG  117 (227)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~--------~-~--~~--~~~~T~~al~~L~~l~~~--~---~~~~~~~~~~l~~~Q~~dG  117 (227)
                      +..++|++.|+++|||.-..        . .  .+  +-..|..++..|+.+...  +   ...+.++++||++.|++||
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG  106 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  106 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence            46799999999999997221        1 0  11  223455555555544221  1   1125889999999999999


Q ss_pred             CcccC-CCCCC-CccchhH---HHHHHHHhhc------------cC-------cccHHHHHHHHHhccCCCCCcCCCCCC
Q 027177          118 SFSGD-IWGEV-DTRFSYI---AICCLSILQR------------LD-------KINVDKAVEYIVSCKNLDGGFGCTPGG  173 (227)
Q Consensus       118 g~~~~-~~~~~-d~~~t~~---a~~~L~~~g~------------~~-------~~~~~~~~~~l~~~Q~~dGGf~~~~~~  173 (227)
                      ||... |.... ....||.   .+.++.++..            .+       ...++|+++||+++|.++|||...++.
T Consensus       107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg~  186 (324)
T d1gxma_         107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA  186 (324)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred             CccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhhh
Confidence            99864 22210 1111221   1222333211            01       235789999999999999997665442


Q ss_pred             C----------------Cch--hhchHHHHHHHHhcCCCCC----CHHHHHHHHHccCccCCCc
Q 027177          174 E----------------SHS--GQIFCCVGALAIAGALHHV----DKDLLGWWLCERQVKSGGL  215 (227)
Q Consensus       174 ~----------------~~~--~~T~~al~aL~~~g~~~~~----~~~~~~~wL~~~Q~~~GGf  215 (227)
                      .                +..  ..|...+..|  +..+.+.    .+++++.||.++|....|+
T Consensus       187 Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~~L--M~~~~s~~i~~ai~~avaWl~~~k~~~~~~  248 (324)
T d1gxma_         187 QHGALDYQPKKARAYELESLSGSESVGVLAFL--MTQPQTAEIEQAVRAGVAWFNSPRTYLEGY  248 (324)
T ss_dssp             EECTTTCCBCCCSTTCCSSEETTTHHHHHHHH--TTSCCCHHHHHHHHHHHHHHTCTTTSEEEE
T ss_pred             ccCcccccccccccccChhhhhhhHHHHHHHH--hhcCCcHHHHHHHHHHHHHHHhchhcccce
Confidence            1                111  1122223322  2332222    2677889999988776666

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.83  E-value=2.1e-08  Score=83.58  Aligned_cols=134  Identities=13%  Similarity=0.086  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhCCC--C------CcCHHHHHHHHHhccCCCCCccCCCC----CCCCh----HHHHHHHHHHHhcc----
Q 027177           36 AYWGLTTLDILGKL--D------AVDEEDVISWILKCQDESGGFAGNIG----HDPHV----LYTLSAVQVLALFD----   95 (227)
Q Consensus        36 ~y~~l~~l~ll~~~--~------~~~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~----~~T~~al~~L~~l~----   95 (227)
                      |...+..|+.+...  +      .....++++||++.|++||||..+..    +..|+    -.+..++..|..+.    
T Consensus       151 Tt~el~~La~~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~  230 (408)
T d1r76a_         151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRD  230 (408)
T ss_dssp             THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhcc
Confidence            45566666655321  1      11366899999999999999986432    22222    13333444444332    


Q ss_pred             cCCCCC----------HHHHHHHHHhccCCCCCcccCCCCC-----------------CCccchhHHHHHHHHhhc--cC
Q 027177           96 KVDILD----------ADKVSNYIVGLQNEDGSFSGDIWGE-----------------VDTRFSYIAICCLSILQR--LD  146 (227)
Q Consensus        96 ~~~~~~----------~~~~~~~l~~~Q~~dGg~~~~~~~~-----------------~d~~~t~~a~~~L~~~g~--~~  146 (227)
                      .+..++          ++|+++||++.|.++|||... |+.                 +.+..+-.+...+.|+..  ++
T Consensus       231 ~~~~~~~~~r~r~~~a~~rgi~~ll~~Q~~~gg~~~~-Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps  309 (408)
T d1r76a_         231 GFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRLG-WGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPS  309 (408)
T ss_dssp             TCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECC-CCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHhcccCCCcCh-HhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCC
Confidence            122121          478999999999999997542 221                 223333334444444443  22


Q ss_pred             ---cccHHHHHHHHHhccCCCCCcCCC
Q 027177          147 ---KINVDKAVEYIVSCKNLDGGFGCT  170 (227)
Q Consensus       147 ---~~~~~~~~~~l~~~Q~~dGGf~~~  170 (227)
                         ...|+++++||.++|.+|+.|...
T Consensus       310 ~~~~~aI~~av~Wl~~~~~~~~~~~~~  336 (408)
T d1r76a_         310 DAVKQAIRGGVAWLNTSVIRDRAWVKS  336 (408)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCC------
T ss_pred             hhHHHHHHHHHHHHHhcccCCceeeec
Confidence               125889999999999999999654

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=6.2e-09  Score=82.74  Aligned_cols=76  Identities=18%  Similarity=0.073  Sum_probs=64.4

Q ss_pred             HHHHHHHHhhc-cCcccHHHHHHHHHhccCCCCCcCCCCCCCCchhhchHHHHHHHHhcCC-CCCCHHHHHHHHHccC
Q 027177          134 IAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQ  209 (227)
Q Consensus       134 ~a~~~L~~~g~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~~~~~~T~~al~aL~~~g~~-~~~~~~~~~~wL~~~Q  209 (227)
                      ..+.+|+++|. .+.+..+++++||.++|++||||+..+++.++.+.|..+..||.++|.. +.+.+.++.+||+++-
T Consensus         8 ~~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~G   85 (279)
T d1w6ka2           8 GLLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKKG   85 (279)
T ss_dssp             HHHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhCC
Confidence            34567888886 3556678999999999999999998888899999999999999999964 3455899999999863

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=8.2e-07  Score=71.98  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC---HHHHHHHHHhccCCCCCcccCCCC-----
Q 027177           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIWG-----  125 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGg~~~~~~~-----  125 (227)
                      ++++++-|.+.|++||||+.+++.+++...|.+++..|..+...-.++   +.+.+.|+...|..+|+|.....-     
T Consensus        54 i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~  133 (326)
T d1hzfa_          54 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM  133 (326)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccccccccCHHH
Confidence            567888899999999999999998999999999999999887643333   577889999999999998753211     


Q ss_pred             -------CCCccchhHHHHHHHHhhccC------------cccHHHHHHHHHhccC
Q 027177          126 -------EVDTRFSYIAICCLSILQRLD------------KINVDKAVEYIVSCKN  162 (227)
Q Consensus       126 -------~~d~~~t~~a~~~L~~~g~~~------------~~~~~~~~~~l~~~Q~  162 (227)
                             ..++..+-+++.+|...+...            ...+.++++|+.+...
T Consensus       134 ~~~~~~~~~~~~~tAyvl~aL~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~~~~~  189 (326)
T d1hzfa_         134 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKAS  189 (326)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHcccccccchhhhhHhhHHHHHHHHHHHHHHHhh
Confidence                   111223334455555444321            2236778889877554

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=98.42  E-value=2.2e-07  Score=74.94  Aligned_cols=113  Identities=13%  Similarity=0.179  Sum_probs=67.3

Q ss_pred             HHHHHHhccCCCCCcccCC-----C----C----CCCccchhHHHHHHHHhhc-----cCcccHHHHHHHHHhccCCCCC
Q 027177          105 VSNYIVGLQNEDGSFSGDI-----W----G----EVDTRFSYIAICCLSILQR-----LDKINVDKAVEYIVSCKNLDGG  166 (227)
Q Consensus       105 ~~~~l~~~Q~~dGg~~~~~-----~----~----~~d~~~t~~a~~~L~~~g~-----~~~~~~~~~~~~l~~~Q~~dGG  166 (227)
                      ..++|.+-|+++|||..+.     .    +    ..|...|..++..|..+..     .....+.++++||++.|++|||
T Consensus        28 ~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nGG  107 (324)
T d1gxma_          28 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA  107 (324)
T ss_dssp             GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred             hhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCCC
Confidence            4678888899999997321     0    0    1244556655555554422     1234678999999999999999


Q ss_pred             cCCC-CCCC-Cchhhch-----HHHHHHH-H--hcC-------CCC-------CCHHHHHHHHHccCccCCCcCC
Q 027177          167 FGCT-PGGE-SHSGQIF-----CCVGALA-I--AGA-------LHH-------VDKDLLGWWLCERQVKSGGLNG  217 (227)
Q Consensus       167 f~~~-~~~~-~~~~~T~-----~al~aL~-~--~g~-------~~~-------~~~~~~~~wL~~~Q~~~GGf~~  217 (227)
                      |+.. |... -+...||     .-++.|. .  .+.       ++.       ..++++++||++.|.++|||-+
T Consensus       108 Wpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t  182 (324)
T d1gxma_         108 LPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLT  182 (324)
T ss_dssp             CBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred             ccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCC
Confidence            9875 2211 1111121     1122221 1  111       010       1268899999999999999754

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.7e-07  Score=70.79  Aligned_cols=74  Identities=19%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             HHHHHHHhCCC-CCcCHHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccC-CCCCHHHHHHHHHhc
Q 027177           39 GLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGL  112 (227)
Q Consensus        39 ~l~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~  112 (227)
                      .|.++.+++.. ++..++++++||.+.|++||||+...+..+++..|..+..+|.+++.. +.....||.+||.+.
T Consensus         9 ~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~   84 (279)
T d1w6ka2           9 LLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK   84 (279)
T ss_dssp             HHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence            35667777754 345688999999999999999999888899999999999999999753 233378999999998

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.8e-05  Score=62.75  Aligned_cols=68  Identities=24%  Similarity=0.263  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhccCCCCCccCCCCCCCChHHHHHHHHHHHhcccCCCCC----HHHHHHHHHhccCCCCCccc
Q 027177           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD----ADKVSNYIVGLQNEDGSFSG  121 (227)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~----~~~~~~~l~~~Q~~dGg~~~  121 (227)
                      ++++++-|.+.|++||||+.+++..++...|.+++..|..+......+    ..++..|+.+.|+.+|.|..
T Consensus        56 i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e  127 (294)
T d1c3da_          56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQE  127 (294)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccc
Confidence            567888899999999999999988899999999999999887653332    24456677788888888864

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Bacterial glucoamylase, C-terminal domain
species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]

Probab=84.62  E-value=4.7  Score=31.66  Aligned_cols=106  Identities=14%  Similarity=0.221  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhccCC--CCCccCCCCC---------------CCChHHHHHHHHHHHhcccCCCCCHHHHHHHHHhccCCC
Q 027177           54 EEDVISWILKCQDE--SGGFAGNIGH---------------DPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNED  116 (227)
Q Consensus        54 ~~~~i~~l~~~q~~--dGgf~~~~~~---------------~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~d  116 (227)
                      .++.+--|+..|+.  .|++-..|..               ...+..+..++.+|..++..+.  .++.++||.+.|.++
T Consensus        11 ~~~s~~~lk~~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~~~~--a~~~l~~l~~~~~~~   88 (397)
T d1lf6a1          11 YYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDVDS--ANRSLDYLAKVVKDN   88 (397)
T ss_dssp             HHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCCceEEEeCCCCcccccCCCCCCCCeeEcHhhHHHHHHHHHHcCCHHH--HHHHHHHHHHHhccc
Confidence            44555555556643  5777655431               1246666666666666554332  577899999999988


Q ss_pred             CCcccCCC--CC-----CCccchhHHHHHHHHhhc--cCcccHHHHHHHHHhcc
Q 027177          117 GSFSGDIW--GE-----VDTRFSYIAICCLSILQR--LDKINVDKAVEYIVSCK  161 (227)
Q Consensus       117 Gg~~~~~~--~~-----~d~~~t~~a~~~L~~~g~--~~~~~~~~~~~~l~~~Q  161 (227)
                      |.+...++  +.     ...-.+-+.+.++..+..  .....++++++||...-
T Consensus        89 G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~~~~~~l~~~~  142 (397)
T d1lf6a1          89 GMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKIG  142 (397)
T ss_dssp             SSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCCCccccCCCCchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhC
Confidence            88754321  11     111111122233333322  13456889999998854

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Bacterial glucoamylase C-terminal domain-like
domain: Bacterial glucoamylase, C-terminal domain
species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]

Probab=81.98  E-value=2.4  Score=33.46  Aligned_cols=105  Identities=6%  Similarity=-0.038  Sum_probs=63.1

Q ss_pred             HHHHHHHHhccCC--CCCcccCCCC----------CCCccch-----hHHHHHHHHhhccCcccHHHHHHHHHhccCCCC
Q 027177          103 DKVSNYIVGLQNE--DGSFSGDIWG----------EVDTRFS-----YIAICCLSILQRLDKINVDKAVEYIVSCKNLDG  165 (227)
Q Consensus       103 ~~~~~~l~~~Q~~--dGg~~~~~~~----------~~d~~~t-----~~a~~~L~~~g~~~~~~~~~~~~~l~~~Q~~dG  165 (227)
                      ++.+--||..|++  .|++-.+|..          ..|-+++     ..++.+|..+|.  ....++.++||.+.|++||
T Consensus        12 ~~s~~~lk~~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~--~~~a~~~l~~l~~~~~~~G   89 (397)
T d1lf6a1          12 YNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGD--VDSANRSLDYLAKVVKDNG   89 (397)
T ss_dssp             HHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHccCCCCCceEEEeCCCCcccccCCCCCCCCeeEcHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHHhcccC
Confidence            4455556666754  5888776531          1222332     234455656665  3356789999999999888


Q ss_pred             CcCCCCC--C-----CCchhhchHHHHHHHHhcCCCC--CCHHHHHHHHHccC
Q 027177          166 GFGCTPG--G-----ESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQ  209 (227)
Q Consensus       166 Gf~~~~~--~-----~~~~~~T~~al~aL~~~g~~~~--~~~~~~~~wL~~~Q  209 (227)
                      .|...+.  +     .+....+.+.+.++......+.  ..++++++||...-
T Consensus        90 ~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~~~~~~l~~~~  142 (397)
T d1lf6a1          90 MIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKIG  142 (397)
T ss_dssp             SCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHHHHHC
T ss_pred             CCCCCCCcCCCccccCCCCchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhC
Confidence            8865531  1     1223445555666655544322  45889999998863