Citrus Sinensis ID: 027195

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
MPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD
ccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHHccccccEEEcccccEEccccccEEEEEEEcccccccHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccEEEEEEcccEEEEcccccccccccccccccccccccEEEEEEEccccccccc
cccccccccccccccEEEEccccEEEEEcccccHHHHHHHHHHHcHcccccEEEcccccccEEEccEEEccccEccccccccHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccccccccccEEEEEEEEHcccccccccEcccccccccccccHHHcccccEEccccccEEEEEEcccccccccccccccccEEEccEEEEcEEEEEccccc
mphgqagddsvtnipfqvlswmpralyfpnfatpeQCKSIINMAklnlrpstlalrkgetvdntqgirtssgvfisaaedesgtlDLIEEKIAKVtmlpringeaFNILRYKIGqkynshydafdpqeygpqksQRVASFLVYLTDleeggetmfpfengmnadgsydyqkciglkvkprqgdgllfysllpngtidptsihgscpvvkgeKWVATKWIRDQEQYD
mphgqagddsvtniPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALrkgetvdntqgirtssgvfisaaedesgtlDLIEEKIAkvtmlpringEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTsihgscpvvkgekwVATKWIRDQEQYD
MPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD
**********VTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEY*****QRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR******
*******DDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLR****************GIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQE***
*********SVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD
********DSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQ****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query226 2.2.26 [Sep-21-2011]
P16924516 Prolyl 4-hydroxylase subu yes no 0.814 0.356 0.271 3e-17
Q60715534 Prolyl 4-hydroxylase subu yes no 0.814 0.344 0.262 2e-16
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.814 0.344 0.262 5e-16
P13674534 Prolyl 4-hydroxylase subu yes no 0.814 0.344 0.262 5e-16
P54001534 Prolyl 4-hydroxylase subu yes no 0.814 0.344 0.257 6e-16
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.814 0.344 0.262 7e-16
Q20065539 Prolyl 4-hydroxylase subu yes no 0.853 0.358 0.260 1e-15
O15460535 Prolyl 4-hydroxylase subu no no 0.796 0.336 0.261 1e-15
Q5UP57242 Putative prolyl 4-hydroxy N/A no 0.752 0.702 0.28 3e-15
Q60716537 Prolyl 4-hydroxylase subu no no 0.796 0.335 0.257 4e-15
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function desciption
 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 22/206 (10%)

Query: 23  PRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDES 82
           PR + F +  + E+ +++  +AK  L  +T+   +   +  T   R S   ++S  E  S
Sbjct: 317 PRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKL-TTAHYRVSKSAWLSGYE--S 373

Query: 83  GTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKS----QRVA 138
             +  I  +I  +T L     E   +  Y +G +Y  H+D     E    K      R+A
Sbjct: 374 PVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIA 433

Query: 139 SFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDP 198
           ++L Y++D+  GG T+FP                +G  V P++G  + +Y+L P+G  D 
Sbjct: 434 TWLFYMSDVSAGGATVFP---------------EVGASVWPKKGTAVFWYNLFPSGEGDY 478

Query: 199 TSIHGSCPVVKGEKWVATKWIRDQEQ 224
           ++ H +CPV+ G KWV+ KW+ ++ Q
Sbjct: 479 STRHAACPVLVGNKWVSNKWLHERGQ 504
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L593 PE=1 SV=1 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query226
225438938285 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.792 0.792 1e-108
449448264294 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.768 0.787 1e-107
449511009294 PREDICTED: LOW QUALITY PROTEIN: prolyl 4 1.0 0.768 0.783 1e-107
255584898290 prolyl 4-hydroxylase alpha subunit, puta 1.0 0.779 0.792 1e-106
356563543293 PREDICTED: putative prolyl 4-hydroxylase 1.0 0.771 0.787 1e-106
255647903293 unknown [Glycine max] 1.0 0.771 0.787 1e-106
363807682293 uncharacterized protein LOC100775302 [Gl 1.0 0.771 0.778 1e-104
357476355297 Prolyl 4-hydroxylase subunit alpha-1 [Me 1.0 0.760 0.756 1e-103
388505024297 unknown [Medicago truncatula] 1.0 0.760 0.747 1e-101
297798522288 oxidoreductase [Arabidopsis lyrata subsp 0.991 0.777 0.736 1e-101
>gi|225438938|ref|XP_002279411.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296087348|emb|CBI33722.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 179/226 (79%), Positives = 207/226 (91%)

Query: 1   MPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGET 60
           + HG++G+DSVT+IPFQVLSW PRALYFPNFAT EQC+SIINMAK NL PST+ALR GE 
Sbjct: 60  LAHGESGEDSVTSIPFQVLSWRPRALYFPNFATSEQCQSIINMAKSNLTPSTVALRVGEI 119

Query: 61  VDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSH 120
             NT+GIRTSSGVFISA+ED++GTLDLIE+KIA+V M+PR +GEAFN+LRY+IGQ+YNSH
Sbjct: 120 RGNTEGIRTSSGVFISASEDKTGTLDLIEQKIARVIMIPRTHGEAFNVLRYEIGQRYNSH 179

Query: 121 YDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPR 180
           YDAFDP EYGPQKS R+A+FLVYL+D+EEGGETMFPFENG+N D  YD+Q+CIGLKVKP 
Sbjct: 180 YDAFDPAEYGPQKSHRIATFLVYLSDVEEGGETMFPFENGLNMDKDYDFQRCIGLKVKPH 239

Query: 181 QGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQYD 226
           QGDGLLFYS+ PNGTIDPTS+HGSCPV+KGEKWVATKWIRDQEQ D
Sbjct: 240 QGDGLLFYSMFPNGTIDPTSLHGSCPVIKGEKWVATKWIRDQEQDD 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449448264|ref|XP_004141886.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511009|ref|XP_004163837.1| PREDICTED: LOW QUALITY PROTEIN: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255584898|ref|XP_002533164.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223527036|gb|EEF29223.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356563543|ref|XP_003550021.1| PREDICTED: putative prolyl 4-hydroxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|255647903|gb|ACU24410.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|363807682|ref|NP_001242420.1| uncharacterized protein LOC100775302 [Glycine max] gi|255641811|gb|ACU21174.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357476355|ref|XP_003608463.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] gi|355509518|gb|AES90660.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388505024|gb|AFK40578.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297798522|ref|XP_002867145.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297312981|gb|EFH43404.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query226
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.991 0.777 0.727 7e-93
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.942 0.777 0.658 8.1e-76
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.933 0.730 0.432 1.2e-44
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.876 0.689 0.440 1.5e-42
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.893 0.696 0.403 6.6e-42
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.898 0.697 0.415 2.2e-41
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.871 0.684 0.436 2.6e-40
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.871 0.661 0.408 1e-36
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.907 0.685 0.401 1.3e-36
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.920 0.734 0.389 1.2e-35
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 163/224 (72%), Positives = 196/224 (87%)

Query:     1 MPHGQAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGET 60
             MPHG  G++S+ +IPFQVLSW PRA+YFPNFAT EQC++II  AK+NL+PS LALRKGET
Sbjct:    63 MPHGVTGEESIGSIPFQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALALRKGET 122

Query:    61 VDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSH 120
              +NT+G RTSSG FISA+E+ +G LD +E KIA+ TM+PR +GE+FNILRY++GQKY+SH
Sbjct:   123 AENTKGTRTSSGTFISASEESTGALDFVERKIARATMIPRSHGESFNILRYELGQKYDSH 182

Query:   121 YDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPR 180
             YD F+P EYGPQ SQR+ASFL+YL+D+EEGGETMFPFENG N    YDY++CIGLKVKPR
Sbjct:   183 YDVFNPTEYGPQSSQRIASFLLYLSDVEEGGETMFPFENGSNMGIGYDYKQCIGLKVKPR 242

Query:   181 QGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQ 224
             +GDGLLFYS+ PNGTID TS+HGSCPV KGEKWVATKWIRDQ+Q
Sbjct:   243 KGDGLLFYSVFPNGTIDQTSLHGSCPVTKGEKWVATKWIRDQDQ 286
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=RCA
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019631001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (285 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038542001
RecName- Full=Proline iminopeptidase; EC=3.4.11.5; (331 aa)
     •  0.899
GSVIVG00038134001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (500 aa)
     •  0.899
GSVIVG00000690001
RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 4e-50
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 2e-36
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 5e-06
PRK05467226 PRK05467, PRK05467, Fe(II)-dependent oxygenase sup 7e-05
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 8e-05
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  165 bits (418), Expect = 4e-50
 Identities = 92/230 (40%), Positives = 132/230 (57%), Gaps = 17/230 (7%)

Query: 4   GQAGDDSVTNI----PF-----QVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLA 54
           G+AGDD V  +    PF     + +SW PR   +  F +  +C  ++ +AK  ++ S +A
Sbjct: 26  GEAGDDGVGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVA 85

Query: 55  LRK-GETVDNTQGIRTSSGVFISAAEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKI 113
             K G++V     +RTSSG+F+   +D    +  IEE+IA  T LP  N E   ILRY+ 
Sbjct: 86  DNKSGKSV--MSEVRTSSGMFLDKRQDP--VVSRIEERIAAWTFLPEENAENIQILRYEH 141

Query: 114 GQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNADGSYD-YQKC 172
           GQKY  H+D F  +        R A+ L+YL+ +++GGET+FP   G       D + +C
Sbjct: 142 GQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSEC 201

Query: 173 I--GLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIR 220
              GL VKP +GD +LF+SL  +G  DP S+HGSCPV++GEKW A KWI 
Sbjct: 202 AHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIH 251

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|235483 PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 226
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.97
PHA02813 354 hypothetical protein; Provisional 99.79
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.78
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.75
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.73
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 99.14
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.83
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.76
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.76
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.61
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 98.19
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 98.15
PHA02866 333 Hypothetical protein; Provisional 98.08
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.92
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.88
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.75
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.61
TIGR02466201 conserved hypothetical protein. This family consis 97.49
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 97.39
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 97.0
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 96.48
PHA02923 315 hypothetical protein; Provisional 96.08
COG3826236 Uncharacterized protein conserved in bacteria [Fun 95.44
KOG3200224 consensus Uncharacterized conserved protein [Funct 94.74
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 94.58
PHA02985 271 hypothetical protein; Provisional 92.12
PLN02485329 oxidoreductase 91.99
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 90.82
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.07
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.04
PLN02904357 oxidoreductase 87.81
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 87.8
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 87.48
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 86.5
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 86.1
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 85.97
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 85.84
PLN02254358 gibberellin 3-beta-dioxygenase 85.75
COG4340226 Uncharacterized protein conserved in bacteria [Fun 85.74
PTZ00273320 oxidase reductase; Provisional 85.57
PLN02276361 gibberellin 20-oxidase 85.49
PLN02216357 protein SRG1 85.12
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 84.58
PLN02365300 2-oxoglutarate-dependent dioxygenase 83.04
PF14033501 DUF4246: Protein of unknown function (DUF4246) 83.02
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 82.93
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 82.67
PF10014195 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018 82.43
PF02668258 TauD: Taurine catabolism dioxygenase TauD, TfdA fa 82.06
PLN02403303 aminocyclopropanecarboxylate oxidase 81.68
PLN02947374 oxidoreductase 81.6
PLN02997325 flavonol synthase 80.57
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-56  Score=382.55  Aligned_cols=218  Identities=37%  Similarity=0.687  Sum_probs=186.6

Q ss_pred             CCCCCceeecccEEEeeCccEEEecCCCCHHHHHHHHHHhhcCCccceEeccCCceeccCCCeEeeceeecCCCCCchhH
Q 027195            5 QAGDDSVTNIPFQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISAAEDESGT   84 (226)
Q Consensus         5 ~~~~~~l~~~p~~~ls~~P~i~~~~~fLs~~Ec~~li~~a~~~l~~s~v~~~~g~~~~~~~~~R~s~~~~l~~~~~~~~~   84 (226)
                      ..+.+.+....+|+||++|+|++|+||||++||++||+++++.+.++++....+. ....+++|+|+++|+...+  +++
T Consensus        36 ~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g-~~~~s~~RTS~~~~l~~~~--dpv  112 (310)
T PLN00052         36 VAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSG-KSVMSEVRTSSGMFLDKRQ--DPV  112 (310)
T ss_pred             ccCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCC-ccccCCCEEecceeecCCC--CHH
Confidence            4566778888889999999999999999999999999999999999988753211 2245679999999998655  479


Q ss_pred             HHHHHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCCCCCCCeEEEEEEEecCcCCCccccCCCCCCCCC-
Q 027195           85 LDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQKSQRVASFLVYLTDLEEGGETMFPFENGMNA-  163 (226)
Q Consensus        85 ~~~i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~-  163 (226)
                      +++|++||++++++|..+.|++||+||++||+|++|+|++........+++|++|+|+||||+++||+|+||....... 
T Consensus       113 v~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~  192 (310)
T PLN00052        113 VSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQ  192 (310)
T ss_pred             HHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccccccc
Confidence            9999999999999999999999999999999999999998643222346899999999999999999999998642111 


Q ss_pred             CCCCCcccc--cceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEecccccccC
Q 027195          164 DGSYDYQKC--IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQY  225 (226)
Q Consensus       164 ~~~~~~~~~--~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~~~~  225 (226)
                      .++..+++|  .+++|+|++|+||||+|++++|+.|++++|+||||++|+||++++|||.++++
T Consensus       193 ~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~  256 (310)
T PLN00052        193 PKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE  256 (310)
T ss_pred             ccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence            122345555  48999999999999999999999999999999999999999999999998764

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PHA02985 hypothetical protein; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PF14033 DUF4246: Protein of unknown function (DUF4246) Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 1e-44
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 1e-44
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 1e-44
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 7e-43
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 6e-28
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure 
Iteration: 1

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 130/208 (62%), Gaps = 13/208 (6%)
Query: 19  LSWMPRALYFPNFATPEQCKSIINMAKLNL-RPSTLALRKGETVDNTQGIRTSSGVFISA 77
           LSW PRA    NF + E+C  I+  A+  + + S +    G++VD+   IRTS+G + + 
Sbjct: 16  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE--IRTSTGTWFAK 73
Query: 78  AEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAF-DPQEYGPQKS-Q 135
            ED    +  IE+++A+VTM+P  N E   +L Y  GQKY  HYD F DP   GP+   Q
Sbjct: 74  GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131
Query: 136 RVASFLVYLTDLEEGGETMFP-FENGMNADGSYDYQKCI--GLKVKPRQGDGLLFYSLLP 192
           RV + L+YLT +EEGGET+ P  E  +  DG   + +C   GL VKP +GD L+FYSL P
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDG---WSECAKRGLAVKPIKGDALMFYSLKP 188
Query: 193 NGTIDPTSIHGSCPVVKGEKWVATKWIR 220
           +G+ DP S+HGSCP +KG+KW ATKWI 
Sbjct: 189 DGSNDPASLHGSCPTLKGDKWSATKWIH 216
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 1e-78
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 1e-71
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 3e-11
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 6e-07
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  234 bits (599), Expect = 1e-78
 Identities = 84/208 (40%), Positives = 118/208 (56%), Gaps = 5/208 (2%)

Query: 18  VLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRKGETVDNTQGIRTSSGVFISA 77
            LSW PRA    NF + E+C  I+  A+  +  S++   +     +++ IRTS+G + + 
Sbjct: 15  HLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSE-IRTSTGTWFAK 73

Query: 78  AEDESGTLDLIEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYGPQK--SQ 135
            ED    +  IE+++A+VTM+P  N E   +L Y  GQKY  HYD F        +   Q
Sbjct: 74  GEDS--VISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131

Query: 136 RVASFLVYLTDLEEGGETMFPFENGMNADGSYDYQKCIGLKVKPRQGDGLLFYSLLPNGT 195
           RV + L+YLT +EEGGET+ P          +      GL VKP +GD L+FYSL P+G+
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGS 191

Query: 196 IDPTSIHGSCPVVKGEKWVATKWIRDQE 223
            DP S+HGSCP +KG+KW ATKWI    
Sbjct: 192 NDPASLHGSCPTLKGDKWSATKWIHVAP 219
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query226
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.94
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.4
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.75
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 98.02
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.96
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.92
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 97.55
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.48
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 97.43
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 97.26
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 97.14
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 96.78
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 96.71
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 96.54
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 89.38
3pl0_A254 Uncharacterized protein; quorum sensing, biofilm f 83.02
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 82.91
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 80.44
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1.3e-52  Score=345.93  Aligned_cols=208  Identities=41%  Similarity=0.741  Sum_probs=176.9

Q ss_pred             eeecc--cEEEeeCccEEEecCCCCHHHHHHHHHHhhcCCccceEeccC-CceeccCCCeEeeceeecCCCCCchhHHHH
Q 027195           11 VTNIP--FQVLSWMPRALYFPNFATPEQCKSIINMAKLNLRPSTLALRK-GETVDNTQGIRTSSGVFISAAEDESGTLDL   87 (226)
Q Consensus        11 l~~~p--~~~ls~~P~i~~~~~fLs~~Ec~~li~~a~~~l~~s~v~~~~-g~~~~~~~~~R~s~~~~l~~~~~~~~~~~~   87 (226)
                      ..++|  +|+||++|+|++++||||++||++||+++++.+.++.+.... |.  ...+.+|+|+.+|+...+  ++++++
T Consensus         6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~--~~~~~~R~s~~~~l~~~~--~~~~~~   81 (224)
T 2jig_A            6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGK--SVDSEIRTSTGTWFAKGE--DSVISK   81 (224)
T ss_dssp             -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTE--EEECSSBCSEEEECCTTC--SHHHHH
T ss_pred             ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCc--ccccCCEEEeeeEecCCC--CHHHHH
Confidence            34444  689999999999999999999999999999989999887532 22  245679999999998654  379999


Q ss_pred             HHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCC--CCCCCeEEEEEEEecCcCCCccccCCCCCCCCCCC
Q 027195           88 IEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYG--PQKSQRVASFLVYLTDLEEGGETMFPFENGMNADG  165 (226)
Q Consensus        88 i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~--~~~~~R~~T~liYLnd~~~GG~T~Fp~~~~~~~~~  165 (226)
                      |++||.+++++|...+|++||+||.+|++|++|+|++......  ...++|++|+|+||||+++||+|+||.....  ..
T Consensus        82 i~~ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~--~~  159 (224)
T 2jig_A           82 IEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQK--VT  159 (224)
T ss_dssp             HHHHHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSC--CC
T ss_pred             HHHHHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCcccc--cc
Confidence            9999999999999999999999999999999999997643211  2357899999999999999999999986422  22


Q ss_pred             CCCcccc--cceEEeeeeccEEEEeecCCCCCCCCCCcccCCCCccceEEEEEeccccccc
Q 027195          166 SYDYQKC--IGLKVKPRQGDGLLFYSLLPNGTIDPTSIHGSCPVVKGEKWVATKWIRDQEQ  224 (226)
Q Consensus       166 ~~~~~~~--~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~PV~~G~K~i~~~W~~~~~~  224 (226)
                      ++.+.+|  .+++|+|++|+||||+|+.++|++|.+++|+||||++|+||++++|++.++.
T Consensus       160 ~~~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~  220 (224)
T 2jig_A          160 GDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPI  220 (224)
T ss_dssp             STTSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCC
T ss_pred             cccccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCc
Confidence            3344555  4799999999999999999999999999999999999999999999998764
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum} Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query226
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 98.14
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 98.04
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 97.23
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 97.14
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 88.46
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 86.44
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 81.78
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

Probab=98.14  E-value=1.3e-05  Score=65.37  Aligned_cols=123  Identities=13%  Similarity=0.132  Sum_probs=68.2

Q ss_pred             HHHHHHHHcCCCCCCCCcceEEecCCCCccccCcCCCCCCCCC--------CCCCCeEEEEEEEecCcC-CCccccC-CC
Q 027195           88 IEEKIAKVTMLPRINGEAFNILRYKIGQKYNSHYDAFDPQEYG--------PQKSQRVASFLVYLTDLE-EGGETMF-PF  157 (226)
Q Consensus        88 i~~ri~~~~~~~~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~--------~~~~~R~~T~liYLnd~~-~GG~T~F-p~  157 (226)
                      |...++.++|-+.......-+.+...+..+.||.|.......+        .......+|+.|+|.|+. +.|.+.| |.
T Consensus        82 il~~v~~llG~~~~~~~~~~~~k~p~~~~~~wHqD~~y~~~~~~~~~~~~~~~~~~~~vtvwiaL~D~~~enG~l~viPG  161 (308)
T d2fcta1          82 ICDRVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFTDANIANGCLQFIPG  161 (308)
T ss_dssp             HHHHHHHHHCSCEEEEEEEEEEECTTCCEECCBCCSSSCTTTSSCSEECCTTSCCCSCEEEEEESSCBCTTBTCEEEETT
T ss_pred             hhhHHHHhhcccceeeecccccccccccccccccccccccCCCCcccccCCCCCCCceEEEEEecccccccceeEEEeeC
Confidence            3445566667443222222344554456689999976432110        112346899999999984 4455554 43


Q ss_pred             CCCCC-CC-----------------C----C--------------CCcccccceEEeeeeccEEEEeecCCCCCCCCCCc
Q 027195          158 ENGMN-AD-----------------G----S--------------YDYQKCIGLKVKPRQGDGLLFYSLLPNGTIDPTSI  201 (226)
Q Consensus       158 ~~~~~-~~-----------------~----~--------------~~~~~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~  201 (226)
                      .-... ..                 .    +              ....+...+.+.-++|+++||.         ..++
T Consensus       162 SHk~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lkaGdvlif~---------~~l~  232 (308)
T d2fcta1         162 TQNSMNYDETKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------STLM  232 (308)
T ss_dssp             CTTSCCBCTTSCCCCCTTTCSSCEETTEEEEBTTBCGGGGBSSTTCCCCGGGCEEECBCTTEEEEEE---------TTSE
T ss_pred             CccCCccccccccccCcccccccccccccccccccccccccccccccccccceEEEeeCCCeEEEEC---------CCcc
Confidence            21100 00                 0    0              0001112356777899999997         5999


Q ss_pred             ccCCCCc--c-ceEEEEEecc
Q 027195          202 HGSCPVV--K-GEKWVATKWI  219 (226)
Q Consensus       202 H~g~PV~--~-G~K~i~~~W~  219 (226)
                      |++.|-.  + -.|++++..+
T Consensus       233 HgS~pN~~~S~~~R~~~~~rY  253 (308)
T d2fcta1         233 HASYPHSGESQEMRMGFASRY  253 (308)
T ss_dssp             EEECCBCSSSSSCEEEEEEEE
T ss_pred             ccCCCCCCCCCCceEEEEEEE
Confidence            9999975  2 3566665443
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure