Citrus Sinensis ID: 027229

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG
Secondary Structure (PSIPRED)
ccccEEEEccccccccccccEEEcccccccccccccEEEEcccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccEEEEccccccccccccEEEEEccccEEEccccccccEEEccccccccHHHHccHHHHHcHHccccccHHHcccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MVGALSVVgssvmdshagpclcldalptsvkgggelvlrrnssvkrKKVKVAARSLElgssfvdswddwrlSSKVISNMVnrssrkrkqrrdrrpvivnevggqyedSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVatnkpgdgkHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETviwpsddsntekig
Flexible Loop (DISEMBL)
MVGALSVVGSSVMDSHAGPCLCLDAlptsvkgggelvlrrnssvkrkkvkvaarslelgssfvdswddwrlsskvisnmvnrssrkrkqrrdrrpvivnevggqyedsfedVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIetviwpsddsntekig
Low Complexity Region (SEG)
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELvlrrnssvkrkkvkvaarslELGSSFVDSWDDWRLSSKVISNMVNrssrkrkqrrdrrPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG
Disordered region (IsUnstruct)
**************SHAGPCLCLDALPTSVKGGGELVLRR********VKVAARSLELGSSFVDSWDDWRLSSKVI*******************VIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIW***********
Disordered Region (DISOPRED)
***A***VGSSVMDSHAGPCLCLDALPTSVKGGGELVL***********************FVDSWDDWRLSS*************************************DVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERL*****************
Disordered Region (DISEMBL)
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNM*************RRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSD********
Disordered Region (DISPRO)
*VGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWP**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVGALSVVGSSVMDSHAGPCLCLDALPTSVKGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
224106179	220	predicted protein [Populus trichocarpa]	0.960	0.986	0.759	9e-93
224055015	221	predicted protein [Populus trichocarpa]	0.964	0.986	0.751	2e-92
225435439	226	PREDICTED: uncharacterized protein LOC10	0.982	0.982	0.704	5e-89
351727180	220	uncharacterized protein LOC100526969 [Gl	0.960	0.986	0.685	7e-87
359806917	225	uncharacterized protein LOC100786585 [Gl	0.960	0.964	0.666	6e-85
449442529	222	PREDICTED: uncharacterized protein LOC10	0.969	0.986	0.655	8e-82
225450121	226	PREDICTED: uncharacterized protein LOC10	0.986	0.986	0.641	2e-81
388520129	222	unknown [Lotus japonicus]	0.960	0.977	0.653	3e-80
357460393	223	hypothetical protein MTR_3g061630 [Medic	0.964	0.977	0.619	9e-77
449448719	213	PREDICTED: uncharacterized protein LOC10	0.929	0.985	0.662	7e-76

>gi|224106179|ref|XP_002314074.1| predicted protein [Populus trichocarpa] gi|222850482|gb|EEE88029.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (885), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 174/229 (75%), Positives = 194/229 (84%), Gaps = 12/229 (5%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGALSVV     D H  PCLCLDALPT+   +K  G+LVL+R SS+KRK++     SLE
Sbjct: 1   MVGALSVV-----DPHTSPCLCLDALPTTNIGLKSSGDLVLQR-SSMKRKQLTRPG-SLE 53

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           LGSSFVDSW DWRLSSK IS +V++SSRK  QR+DR  V+VNE+GGQYEDSFEDVK Q+ 
Sbjct: 54  LGSSFVDSWHDWRLSSKAISGIVSKSSRK--QRKDRGLVVVNELGGQYEDSFEDVKMQLI 111

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITR 177
           NYFTYKAVRTVL+QLYEMNPTQY W YNFVA NKPGDGK FIR LGKEKQDLAERVM+TR
Sbjct: 112 NYFTYKAVRTVLNQLYEMNPTQYTWLYNFVAQNKPGDGKRFIRSLGKEKQDLAERVMVTR 171

Query: 178 LHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
           LHLYGKWVKKCDHA++YK ISDENLELMRERL+ETV WPSDD+NTEKIG
Sbjct: 172 LHLYGKWVKKCDHAEIYKEISDENLELMRERLMETVKWPSDDTNTEKIG 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055015|ref|XP_002298402.1| predicted protein [Populus trichocarpa] gi|222845660|gb|EEE83207.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 169/225 (75%), Positives = 193/225 (85%), Gaps = 7/225 (3%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGALSV+GSSV+D H  PCLCLD+LPT+   +K  G+L L+R SS+KRK++     SLE
Sbjct: 1   MVGALSVMGSSVVDPHTSPCLCLDSLPTTNIGLKNSGDLALQR-SSIKRKQLTRPG-SLE 58

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           LGSSFVDSW DWRLSSK IS +V++SSRK  QR+DR  VIV+E+ GQYEDSFEDVK Q+ 
Sbjct: 59  LGSSFVDSWHDWRLSSKAISGIVSKSSRK--QRKDRGLVIVSELAGQYEDSFEDVKTQLL 116

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITR 177
           NYFTYKAVRTVL+QLYEMNPTQY WFYNFVA NKPGDGK F+R L KEKQDLAERVM+TR
Sbjct: 117 NYFTYKAVRTVLNQLYEMNPTQYTWFYNFVAHNKPGDGKRFLRALVKEKQDLAERVMVTR 176

Query: 178 LHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNT 222
           LHLYGKW+KKCDHA++YK ISDENLELMRERL ETVIWPSDD+NT
Sbjct: 177 LHLYGKWIKKCDHAEIYKEISDENLELMRERLKETVIWPSDDTNT 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435439|ref|XP_002285429.1| PREDICTED: uncharacterized protein LOC100246804 [Vitis vinifera]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 162/230 (70%), Positives = 194/230 (84%), Gaps = 8/230 (3%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VK-GGGELVLRRNSSVKRKKVKVAARSL 56
           M GALSVVGSS+ D    PCLCLDALP+S   VK GGG+LV +RNS  K++  +    ++
Sbjct: 1   MSGALSVVGSSIFDPKTCPCLCLDALPSSNMSVKAGGGDLVWQRNSVGKKRLSRPG--TV 58

Query: 57  ELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQI 116
           E+GSSFVDSW +WRL +KV+S++VN+SSR+  Q + RR ++V+EV GQYEDSFEDVK QI
Sbjct: 59  EMGSSFVDSWHEWRLEAKVLSSIVNKSSRR--QHKARRLLVVSEVAGQYEDSFEDVKTQI 116

Query: 117 QNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMIT 176
            NYFTYKAVRTV+HQLYEMNPTQY W Y+FVA NKPG+GK FIRIL KEKQ+LAERVM+T
Sbjct: 117 LNYFTYKAVRTVMHQLYEMNPTQYRWLYDFVAANKPGEGKRFIRILVKEKQELAERVMVT 176

Query: 177 RLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
           RLHLYGKW+KKC+HA++YK ISDENLELMRERL+ETV WPSDD+NTEKIG
Sbjct: 177 RLHLYGKWIKKCNHAEIYKEISDENLELMRERLMETVKWPSDDTNTEKIG 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727180|ref|NP_001236640.1| uncharacterized protein LOC100526969 [Glycine max] gi|255631274|gb|ACU16004.1| unknown [Glycine max]

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 187/229 (81%), Gaps = 12/229 (5%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGALSVVGSSVMDSH GPCLC+DALPT+   +K GG+++ +     KR  VK    +++
Sbjct: 1   MVGALSVVGSSVMDSHTGPCLCVDALPTTSVNLKSGGDVLCKNLMGRKRNLVKHGGGTMK 60

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           L SSFVD   +WRL        V++S ++  QR+DRR  IVNE+GGQYED+FEDVK Q+ 
Sbjct: 61  LSSSFVDPGREWRL-------FVSKSCKR--QRKDRRVTIVNELGGQYEDTFEDVKAQML 111

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITR 177
           NYFTYKAVRTVLHQLYEMNP +Y WFYNFVA+NKP DGK FIR LGKE+Q+LAERVM+TR
Sbjct: 112 NYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQELAERVMVTR 171

Query: 178 LHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
           LHLYGKWVKKC+HA++Y+ ISDENLELMRERL+ETVIWPSDD+NTEKIG
Sbjct: 172 LHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPSDDTNTEKIG 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806917|ref|NP_001241067.1| uncharacterized protein LOC100786585 [Glycine max] gi|255640127|gb|ACU20354.1| unknown [Glycine max]

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 156/234 (66%), Positives = 188/234 (80%), Gaps = 17/234 (7%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS----VKGGGELVLRRNSSVKR----KKVKVA 52
           MVGALSVVGSSVMDSH GPCLC+DALPT+    +K GG++VL +N   ++    K     
Sbjct: 1   MVGALSVVGSSVMDSHTGPCLCVDALPTTTSVNLKSGGDVVLCKNLMGRKHNLVKHGGGG 60

Query: 53  ARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDV 112
             +++L SSFVD   +WRL        V++S ++  QR+DRR  IVNE+GGQYED+FEDV
Sbjct: 61  GTTMKLSSSFVDPGREWRL-------FVSKSCKR--QRKDRRVTIVNELGGQYEDTFEDV 111

Query: 113 KKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAER 172
           K Q+ NYFTYKAVRTVLHQLYEMNP +Y WFYNFVA+NKP DGK FIR LGKE+Q+LAER
Sbjct: 112 KTQMLNYFTYKAVRTVLHQLYEMNPPKYTWFYNFVASNKPADGKRFIRSLGKEQQELAER 171

Query: 173 VMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
           VM+TRLHLYGKWVKKC+HA++Y+ ISDENLELMRERL+ETVIWP+DD+NTEKIG
Sbjct: 172 VMVTRLHLYGKWVKKCNHAEIYQEISDENLELMRERLMETVIWPTDDTNTEKIG 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442529|ref|XP_004139034.1| PREDICTED: uncharacterized protein LOC101213099 [Cucumis sativus] gi|449476061|ref|XP_004154629.1| PREDICTED: uncharacterized LOC101213099 [Cucumis sativus]

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 150/229 (65%), Positives = 189/229 (82%), Gaps = 10/229 (4%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGALS+VGSSV+DSH+ PCLCLDALPT+   +K  G+ V+++  S  R+++    + L+
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLP-KPKHLD 59

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           L SSFVD+  +W LS     +M+NRSSRK  Q ++RR ++V+E+GGQYED+F+DVK Q+ 
Sbjct: 60  LSSSFVDNGREWLLSV----DMINRSSRK--QTKNRRLMVVDELGGQYEDNFDDVKMQML 113

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITR 177
           NYFTYKAVRTV++QLYEMNP QY W Y+FV  NKP DGKHFIR L KE+QDLAERVMITR
Sbjct: 114 NYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQDLAERVMITR 173

Query: 178 LHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
           LHLYGKWVKKC+HA++Y+ ISDEN+ELMRERL++TVIWPSDD+NTEKIG
Sbjct: 174 LHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450121|ref|XP_002279163.1| PREDICTED: uncharacterized protein LOC100251681 [Vitis vinifera]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/229 (64%), Positives = 187/229 (81%), Gaps = 6/229 (2%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGA+ +  SS  + ++ P LCLD+L  S   VK  G+  L RN   K++  +    SL+
Sbjct: 1   MVGAILISSSSFPELYSCPYLCLDSLSLSNLNVKSSGDSGLYRNLIAKKQLWRPG--SLD 58

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           L SSF+D+W +WRLS+K++S++ NR SRK+++  +    IV+E+GGQYED+F DVKKQIQ
Sbjct: 59  LSSSFIDAWYEWRLSTKMLSHIANRCSRKQRKLGNHLS-IVDELGGQYEDTFNDVKKQIQ 117

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITR 177
           NYFT+KAVRTVL+QLYEMNPT+Y WFYNFVA NKPGDGKHFI+ LGKEKQ+LAERVMITR
Sbjct: 118 NYFTFKAVRTVLNQLYEMNPTEYTWFYNFVAANKPGDGKHFIQTLGKEKQELAERVMITR 177

Query: 178 LHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
           LHLYGKW+KKC+HA++YK ISD+NLELMRERL+ET++WPSDD+NTEKIG
Sbjct: 178 LHLYGKWIKKCNHAEIYKEISDQNLELMRERLMETIVWPSDDTNTEKIG 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520129|gb|AFK48126.1| unknown [Lotus japonicus]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 151/231 (65%), Positives = 183/231 (79%), Gaps = 14/231 (6%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTS---VKGGGELVLRRNSSVKRKKVKVAA--RS 55
           MVGALSVVGSSVMDSH GPCLC+DALPT+   +K GG++ L ++   K+  ++     ++
Sbjct: 1   MVGALSVVGSSVMDSHTGPCLCVDALPTTNVNLKSGGDVALCKSLMGKKHFLRSGGNGKT 60

Query: 56  LELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQ 115
           +EL SSF     +WRLS       V+R+ +K  QRRDR+  IVNE+GGQYE+ F+DVK Q
Sbjct: 61  MELSSSFTGPGWEWRLS-------VSRNCKK--QRRDRKMGIVNELGGQYEEGFDDVKTQ 111

Query: 116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMI 175
           + NYFT KAVRTVL QLYEMNP +Y WFYNFV +NKP DGK F+R LGKE+++LAERVM+
Sbjct: 112 MLNYFTVKAVRTVLQQLYEMNPPKYTWFYNFVVSNKPTDGKRFLRSLGKEQRELAERVMV 171

Query: 176 TRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
           TRLHLY KWVKKCDHAQ+YK ISDENLELMRERL+ETVIWPSDDSNTE+IG
Sbjct: 172 TRLHLYSKWVKKCDHAQIYKEISDENLELMRERLMETVIWPSDDSNTERIG 222

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460393|ref|XP_003600478.1| hypothetical protein MTR_3g061630 [Medicago truncatula] gi|355489526|gb|AES70729.1| hypothetical protein MTR_3g061630 [Medicago truncatula]

 Score =  291 bits (746), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 143/231 (61%), Positives = 180/231 (77%), Gaps = 13/231 (5%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPTSVK----GGGELVLRRNSSVKRK-KVKVAARS 55
           MVGA+SV+GSS+MDSH GPCLC+DALPT+      G G++VL +N   K+  + +   R+
Sbjct: 1   MVGAISVIGSSMMDSHTGPCLCVDALPTTNMNLKIGCGDVVLWKNLMGKKHLEKRGGGRT 60

Query: 56  LELGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQ 115
           + L SSF D   +WR+         +RS +K++   DRR  IV+E+GGQYED+FEDVK Q
Sbjct: 61  MGLSSSFTDPGREWRVK-------FSRSCKKQRSE-DRRVTIVSELGGQYEDTFEDVKTQ 112

Query: 116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMI 175
           + NYFTYKAVRTV+ QLYEMNP +Y WFYNFV +NKP DGK FIR+LGKE+Q+LAERVM+
Sbjct: 113 MLNYFTYKAVRTVMQQLYEMNPPKYTWFYNFVVSNKPQDGKRFIRLLGKEQQELAERVML 172

Query: 176 TRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTEKIG 226
           TRL+LY KWVKKC+HA++Y  ISDENLELMRERL+ETVIWPSDDS++E IG
Sbjct: 173 TRLNLYAKWVKKCNHAEIYNQISDENLELMRERLMETVIWPSDDSSSELIG 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448719|ref|XP_004142113.1| PREDICTED: uncharacterized protein LOC101203881 [Cucumis sativus]

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 172/222 (77%), Gaps = 12/222 (5%)

Query: 1   MVGALSVVGSSVMDSHAGPCLCLDALPT---SVKGGGELVLRRNSSVKRKKVKVAARSLE 57
           MVGAL VVG+ V+DS   PCL  D+ P    S++ GG+LVL+R S  K K     ++S++
Sbjct: 1   MVGALFVVGAPVVDS-LPPCLSFDSSPVTNMSLRSGGDLVLQRKS--KAKSYLTVSKSVD 57

Query: 58  LGSSFVDSWDDWRLSSKVISNMVNRSSRKRKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQ 117
           L SSFV+  D+W+LS+            KR QRR+RR V+VNE  GQYEDSF+DVK QIQ
Sbjct: 58  LRSSFVNLGDEWQLSAG------GGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQ 111

Query: 118 NYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITR 177
           NYFTYKAV+TVL+QLYEMNPTQY WFYNFV  +KPG+GK FIR L KEKQDLAERVMITR
Sbjct: 112 NYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITR 171

Query: 178 LHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDD 219
           LHLY KWVKKCDHA++YK ISDENLELMRERL+ETVIWPSDD
Sbjct: 172 LHLYNKWVKKCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:505006621	203	RbcX2 "AT5G19855" [Arabidopsis	0.699	0.778	0.658	3.4e-54
TAIR|locus:2134877	174	RbcX1 "AT4G04330" [Arabidopsis	0.433	0.563	0.355	1.2e-08

TAIR|locus:505006621 RbcX2 "AT5G19855" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 110/167 (65%), Positives = 128/167 (76%)

Query:    57 ELGSSFVDSWDDWRLSSKVISNMVNXXXXXXXXXXXXXPVIVNE-VGGQYEDSFEDVKKQ 115
             ELGSSF  S   +RLS K +S + N              +IVNE V G Y+D+F DV+KQ
Sbjct:    44 ELGSSFTGSRIVFRLSPKRVSRIANRKSKKL--------LIVNEDVAGNYDDTFGDVQKQ 95

Query:   116 IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMI 175
             I NYFTYKAVRTVLHQLYEMNP QY WFYN + TN+P DGK F+R LGKE Q+LAERVMI
Sbjct:    96 IVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMI 155

Query:   176 TRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNT 222
             TRLHLYGKW+KKCDH ++Y+ ISDENL LMRERL+ETVIWPSDD+N+
Sbjct:   156 TRLHLYGKWIKKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0044183 "protein binding involved in protein folding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

TAIR|locus:2134877 RbcX1 "AT4G04330" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 37/104 (35%), Positives = 52/104 (50%)

Query:   114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQ---DLA 170
             K + ++FTY AVR V  QL   NP  YM    F+ TN   DG  F   L +      +LA
Sbjct:    63 KHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLA 122

Query:   171 ERVMITRLHLYGKWVKKCDHAQM--YKAISDENLELMRERLIET 212
              R++  R   Y K   + D+ +   +K + D N  LMRE ++ET
Sbjct:   123 LRILEVR-SAYCKNDFEWDNMKRLAFKNVDDSNTRLMREYVLET 165


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      226       193   0.00098  110 3  11 22  0.47    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.63u 0.22s 15.85t   Elapsed:  00:00:01
  Total cpu time:  15.63u 0.22s 15.85t   Elapsed:  00:00:01
  Start:  Fri May 10 05:54:17 2013   End:  Fri May 10 05:54:18 2013

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0044183 "protein binding involved in protein folding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_IX1048	hypothetical protein (220 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0089000701	hypothetical protein (311 aa)			•	•					0.509
	gw1.XIII.1619.1	hypothetical protein (398 aa)			•						0.506
	gw1.IV.3493.1	hypothetical protein (374 aa)			•						0.506
	eugene3.00181050	hypothetical protein (120 aa)			•						0.506
	eugene3.00150423	SubName- Full=Putative uncharacterized protein; (206 aa)			•						0.506
	eugene3.00090150	hypothetical protein (129 aa)			•						0.506
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)			•						0.506
	estExt_Genewise1_v1.C_LG_XIV3823	hypothetical protein (206 aa)			•						0.506
	estExt_Genewise1_v1.C_LG_XIV2304	hypothetical protein (126 aa)			•						0.506
	gw1.XIV.2732.1	hypothetical protein (109 aa)			•						0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
pfam02341	111	pfam02341, RcbX, RbcX protein	2e-18

>gnl|CDD|202210 pfam02341, RcbX, RbcX protein

 Score = 77.0 bits (190), Expect = 2e-18
 Identities = 32/70 (45%), Positives = 44/70 (62%)

Query: 111 DVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLA 170
           D  K +Q+Y TY+AVRTVL QL E NP   +W + F A+ K  DG+ ++  L +E  +LA
Sbjct: 9   DTAKVLQSYLTYQAVRTVLDQLSETNPPLAIWLHQFSASGKIQDGEAYLEELLQENPELA 68

Query: 171 ERVMITRLHL 180
            R+M  R HL
Sbjct: 69  LRIMTVREHL 78

The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PF02341	111	RcbX: RbcX protein; InterPro: IPR003435 The RbcX p	100.0

>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []

Probab=100.00  E-value=3.4e-45  Score=292.25  Aligned_cols=102  Identities=44%  Similarity=0.703  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcc
Q 027229          110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCD  189 (226)
Q Consensus       110 ~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~l~  189 (226)
                      .|||++|+|||||+||||||+||+|||||.|.||+||+++|||+|||+||++||+|+|+||+|||+||+|||+++.++|+
T Consensus         8 kdtak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~F~~~~~~~DGd~fl~~L~~e~~~LA~RIM~vR~~la~~~~d~l~   87 (111)
T PF02341_consen    8 KDTAKVLQSYFTYQAVRTVLAQLYETNPPAYIWLYNFLSRNPLQDGDAFLEALMRENQELALRIMEVREHLAEEVFDFLP   87 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHSTCSSHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhh
Q 027229          190 HAQMYKAISDENLELMRERLIET  212 (226)
Q Consensus       190 ~~m~~~~I~e~N~elMRe~L~eT  212 (226)
                       +|++++|+++|+++||+||.+.
T Consensus        88 -em~~~~I~~~N~e~~R~~L~r~  109 (111)
T PF02341_consen   88 -EMVREGIQQANMELMRQYLERM  109 (111)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHh
Confidence             9999999999999999999875

The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
4gr6_A	126	Crystal Structure Of Atrbcx2 From Arabidopsis Thali		8e-54
2peo_A	155	Crystal Structure Of Rbcx From Anabaena Ca Length =		8e-12
3q20_A	126	Crystal Structure Of Rbcx C103a Mutant From Thermos		4e-09
4gr2_A	128	Structure Of Atrbcx1 From Arabidopsis Thaliana. Len		1e-08
2py8_A	147	Rbcx Length = 147		1e-06
2pem_A	134	Crystal Structure Of Rbcx In Complex With Substrate		4e-05
2z44_A	134	Crystal Structure Of Selenomethionine-Labeled Orf13		7e-05
2pei_A	109	Crystal Structure Of Selenomethionine-Labeled Rbcx		2e-04
2pek_A	134	Crystal Structure Of Rbcx Point Mutant Q29a Length		2e-04

>pdb|4GR6|A Chain A, Crystal Structure Of Atrbcx2 From Arabidopsis Thaliana Length = 126

Iteration: 1
 Score =  206 bits (524), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 92/125 (73%), Positives = 108/125 (86%)
Query: 98  VNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKH 157
           + +V G Y+D+F DV+KQI NYFTYKAVRTVLHQLYEMNP QY WFYN + TN+P DGK 
Sbjct: 1   MEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKR 60
Query: 158 FIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPS 217
           F+R LGKE Q+LAERVMITRLHLYGKW+KK DH ++Y+ ISDENL LMRERL+ETVIWPS
Sbjct: 61  FLRALGKESQELAERVMITRLHLYGKWIKKADHGKIYQEISDENLALMRERLMETVIWPS 120
Query: 218 DDSNT 222
           DD+N+
Sbjct: 121 DDTNS 125

>pdb|2PEO|A Chain A, Crystal Structure Of Rbcx From Anabaena Ca Length = 155

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDL 169
           +D  K +Q+Y TY+A+RTVL QL E NP   +W +NF A  K  DG+ +I  L  EK DL
Sbjct: 28  KDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDL 86
Query: 170 AERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERL 209
           A R+M  R H+  + + +     +   I   N+E  R+ L
Sbjct: 87  ALRIMTVREHI-AEEIAEFLPEMVVTGIQQANMEKRRQHL 125

>pdb|3Q20|A Chain A, Crystal Structure Of Rbcx C103a Mutant From Thermosynechococcus Elongatus Length = 126

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERV 173
           K + +Y TY+AVRTV+ QL E +P + +W + F +     DG+ ++  L +E+ DL  R+
Sbjct: 12  KTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRI 71
Query: 174 MITRLHL 180
           +  R HL
Sbjct: 72  LTVREHL 78

>pdb|4GR2|A Chain A, Structure Of Atrbcx1 From Arabidopsis Thaliana. Length = 128

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQ---DLA 170
           K + ++FTY AVR V  QL   NP  YM    F+ TN   DG  F+  L +      +LA
Sbjct: 17  KHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFLATLMRRSSRHMNLA 76
Query: 171 ERVMITRLHLYGKWVKKCDHAQ--MYKAISDENLELMRERLIET 212
            R++  R   Y K   + D+ +   +K + D N  LMRE ++ET
Sbjct: 77  LRILEVR-SAYAKNDFEWDNMKRLAFKNVDDSNTRLMREYVLET 119

>pdb|2PY8|A Chain A, Rbcx Length = 147

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 114 KQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERV 173
           K +Q+Y TY+AV  +  +L E NP Q +W   ++A++   +G+ F+  L  E ++L  R+
Sbjct: 12  KVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRI 71
Query: 174 MITRLHLYGKWVKKCDHAQMYKAISDENLELMR---ERLIETVI----WPSDDSNTE 223
           +  R  +  + V          ++++ N+   R   ERL  TV     +PS+ SN E
Sbjct: 72  LAVREDI-AESVLDFLPGMTRNSLAESNIAHRRHLLERLTRTVAEVDNFPSETSNGE 127

>pdb|2PEM|A Chain A, Crystal Structure Of Rbcx In Complex With Substrate Length = 134

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 109 FEDVKKQ----IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           F+ V K+    +Q+Y TY+AVR +  QL E NP Q +W   F   +   +   ++  +  
Sbjct: 3   FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMML 62
Query: 165 EKQDLAERVMITRLHL 180
           E ++L  R++  R +L
Sbjct: 63  ENKELVLRILTVRENL 78

>pdb|2Z44|A Chain A, Crystal Structure Of Selenomethionine-Labeled Orf134 Length = 134

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 FEDVKKQ----IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           F+ V K+    +Q+Y TY+AVR +  QL E NP Q +W   F   +   +   ++     
Sbjct: 3   FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXL 62
Query: 165 EKQDLAERVMITRLHL 180
           E ++L  R++  R +L
Sbjct: 63  ENKELVLRILTVRENL 78

>pdb|2PEI|A Chain A, Crystal Structure Of Selenomethionine-Labeled Rbcx Length = 109

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 FEDVKKQ----IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           F+ V K+    +Q+Y TY+AVR +  QL E NP Q +W   F   +   +   ++     
Sbjct: 3   FKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXL 62
Query: 165 EKQDLAERVMITRLHL 180
           E ++L  R++  R +L
Sbjct: 63  ENKELVLRILTVRENL 78

>pdb|2PEK|A Chain A, Crystal Structure Of Rbcx Point Mutant Q29a Length = 134

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 109 FEDVKKQ----IQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK 164
           F+ V K+    +Q+Y TY+AVR +   L E NP Q +W   F   +   +   ++  +  
Sbjct: 3   FKKVAKETAITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMML 62
Query: 165 EKQDLAERVMITRLHL 180
           E ++L  R++  R +L
Sbjct: 63  ENKELVLRILTVRENL 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
3hyb_A	155	RBCX protein; rubisco, protein complex assembly, c	3e-52
3ka1_A	126	RBCX protein; chaperone, helix bundle, rubisco ass	1e-47
2py8_A	147	Hypothetical protein RBCX; all helical fold, chape	2e-47
2peq_A	134	ORF134; helix bundle, protein complex assembly, ch	2e-46
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C Length = 155

 Score =  165 bits (418), Expect = 3e-52
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 87  RKQRRDRRPVIVNEVGGQYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNF 146
                    ++        +   +D  K +Q+Y TY+A+RTVL QL E NP   +W +NF
Sbjct: 5   HHHHHHSSGLVPRGSHMNLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNF 64

Query: 147 VATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMR 206
            A  K  DG+ +I  L  EK DLA R+M  R H+  + + +     +   I   N+E  R
Sbjct: 65  SA-GKVQDGEKYIEELFLEKPDLALRIMTVREHI-AEEIAEFLPEMVVTGIQQANMEKRR 122

Query: 207 ERLIETVIWPSDDSNTEK 224
           + L           + E 
Sbjct: 123 QHLERMTQVSLSHPSPES 140

>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1 Length = 147

 Score =  152 bits (385), Expect = 2e-47
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 104 QYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILG 163
           Q +   +   K +Q+Y TY+AV  +  +L E NP Q +W   ++A++   +G+ F+  L 
Sbjct: 2   QTKHIAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELL 61

Query: 164 KEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMR---ERLIETVI----WP 216
            E ++L  R++  R  +  + V          ++++ N+   R   ERL  TV     +P
Sbjct: 62  DENKELVLRILAVREDI-AESVLDFLPGMTRNSLAESNIAHRRHLLERLTRTVAEVDNFP 120

Query: 217 SDDSNTE 223
           S+ SN E
Sbjct: 121 SETSNGE 127

>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A Length = 134

 Score =  149 bits (377), Expect = 2e-46
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 1/121 (0%)

Query: 104 QYEDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILG 163
           +++   ++    +Q+Y TY+AVR +  QL E NP Q +W   F   +   +   ++  + 
Sbjct: 2   EFKKVAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMM 61

Query: 164 KEKQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSNTE 223
            E ++L  R++  R +   + V +     +   I   N    R  L       S  ++  
Sbjct: 62  LENKELVLRILTVREN-LAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLTQVDSSSTDQT 120

Query: 224 K 224
           +
Sbjct: 121 E 121

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 35/248 (14%), Positives = 68/248 (27%), Gaps = 77/248 (31%)

Query: 31  KGGGELVLRRNSSVKRKKVKVAARSLELGSSFVDS--W---------DD-----WRLSSK 74
            G G+  +                S ++         W         +       +L  +
Sbjct: 159 LGSGKTWV----------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 75  VISNMVNRSSRKRK--------QRRDRRPVIVNEVGGQYEDSF---EDVK-KQIQNYF-- 120
           +  N  +RS             Q   RR ++ ++    YE+      +V+  +  N F  
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSK---PYENCLLVLLNVQNAKAWNAFNL 264

Query: 121 -------T-YKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKH-FIRILGKEKQDLAE 171
                  T +K V   L      + +             P + K   ++ L    QDL  
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPR 320

Query: 172 RV---------MITRL-----HLYGKWVKKCDHAQMYKAISD--ENLE--LMRERLIETV 213
            V         +I          +  W K  +  ++   I      LE    R+      
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 214 IWPSDDSN 221
           ++P   ++
Sbjct: 380 VFP-PSAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
2py8_A	147	Hypothetical protein RBCX; all helical fold, chape	100.0
3ka1_A	126	RBCX protein; chaperone, helix bundle, rubisco ass	100.0
2peq_A	134	ORF134; helix bundle, protein complex assembly, ch	100.0
3hyb_A	155	RBCX protein; rubisco, protein complex assembly, c	100.0

>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1

Probab=100.00  E-value=1.7e-49  Score=328.70  Aligned_cols=116  Identities=25%  Similarity=0.399  Sum_probs=104.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHh
Q 027229          108 SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKK  187 (226)
Q Consensus       108 ~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~  187 (226)
                      .|+|||++|++||||+||||||+||+|||||.|.||++|+++|||+|||+||++||+|+|+||+|||+||+|||++|.++
T Consensus         6 ~~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~~~LAlRIMeVR~~ya~e~fe~   85 (147)
T 2py8_A            6 IAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVREDIAESVLDF   85 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHh-------hccCCCCCCCCCC
Q 027229          188 CDHAQMYKAISDENLELMRERLIE-------TVIWPSDDSNTEK  224 (226)
Q Consensus       188 l~~~m~~~~I~e~N~elMRe~L~e-------T~~~psd~~n~~~  224 (226)
                      ++ +|++++|+++|+++||+||..       +++||||++|+||
T Consensus        86 l~-em~~~~I~~~N~elmRq~leR~t~~~~e~~~~psd~~~~~~  128 (147)
T 2py8_A           86 LP-GMTRNSLAESNIAHRRHLLERLTRTVAEVDNFPSETSNGES  128 (147)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCCccc
Confidence            87 999999999999999977665       4499999999987

>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A

Probab=100.00  E-value=4.7e-45  Score=298.25  Aligned_cols=111  Identities=23%  Similarity=0.307  Sum_probs=101.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHh
Q 027229          108 SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKK  187 (226)
Q Consensus       108 ~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~  187 (226)
                      -|+|||++|++|||||||||||+||+|||||.|.||++|+++|||+|||+||++||+|+|+||+|||+||+|||++|.++
T Consensus         6 ~~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l~DGd~fL~~L~~e~~~LAlRIM~VRe~ya~e~~e~   85 (134)
T 2peq_A            6 VAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEF   85 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCCccHHHHHHHHHhHCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 027229          188 CDHAQMYKAISDENLELMRERLIETVIWPSDD  219 (226)
Q Consensus       188 l~~~m~~~~I~e~N~elMRe~L~eT~~~psd~  219 (226)
                      ++ +|++++|+++|+++||+||.+.+..-..+
T Consensus        86 l~-~m~~~~I~~~N~~lmR~~ler~t~~~~~~  116 (134)
T 2peq_A           86 LP-EMVLSQIKQSNGNHRRSLLERLTQVDSSS  116 (134)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            87 99999999999999999999988544333

>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C

Probab=100.00  E-value=1.2e-43  Score=295.29  Aligned_cols=106  Identities=37%  Similarity=0.509  Sum_probs=98.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 027229          106 EDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWV  185 (226)
Q Consensus       106 ed~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~  185 (226)
                      .+-+.|||++|++|||||||||||+||+||||+.|.||++|++ |||+|||+||++||+|+|+||+|||+||+|||+++.
T Consensus        24 k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~iqDGe~fl~~L~~E~~~LA~RIM~VRehlae~v~  102 (155)
T 3hyb_A           24 KQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDLALRIMTVREHIAEEIA  102 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCcccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999999 999999999999999999999999999999999888


Q ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHhhc
Q 027229          186 KKCDHAQMYKAISDENLELMRERLIETV  213 (226)
Q Consensus       186 ~~l~~~m~~~~I~e~N~elMRe~L~eT~  213 (226)
                      +|++ +|++++|+++|+++||+||.+.+
T Consensus       103 eflp-eMv~~~IqqaN~el~Rq~LeR~t  129 (155)
T 3hyb_A          103 EFLP-EMVVTGIQQANMEKRRQHLERMT  129 (155)
T ss_dssp             GGHH-HHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            8886 99999999999999999996644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d2peoa1	115	a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabae	1e-42
d2peqa1	108	a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synech	2e-42
d2py8a1	120	a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synech	3e-42

>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]} Length = 115

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Anabaena sp. [TaxId: 1167]

 Score =  138 bits (349), Expect = 1e-42
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 2/104 (1%)

Query: 109 FEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQD 168
            +D  K +Q+Y TY+A+RTVL QL E NP   +W +NF A  K  DG+ +I  L  EK D
Sbjct: 7   AKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPD 65

Query: 169 LAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIET 212
           LA R+M  R H   + + +     +   I   N+E  R+ L   
Sbjct: 66  LALRIMTVREH-IAEEIAEFLPEMVVTGIQQANMEKRRQHLERM 108

>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]} Length = 108

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechococcus sp. pcc 7002 [TaxId: 32049]

 Score =  137 bits (347), Expect = 2e-42
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDL 169
           ++    +Q+Y TY+AVR +  QL E NP Q +W   F   +   +   ++  +  E ++L
Sbjct: 7   KETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKEL 66

Query: 170 AERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERL 209
             R++  R +   + V +     +   I   N    R  L
Sbjct: 67  VLRILTVREN-LAEGVLEFLPEMVLSQIKQSNGNHRRSLL 105

>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]} Length = 120

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechocystis sp., strain PCC 6803 [TaxId: 1143]

 Score =  137 bits (347), Expect = 3e-42
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 111 DVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLA 170
              K +Q+Y TY+AV  +  +L E NP Q +W   ++A++   +G+ F+  L  E ++L 
Sbjct: 8   ATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELV 67

Query: 171 ERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDSN 221
            R++  R     + V          ++++ N+   R  L       ++  N
Sbjct: 68  LRILAVRED-IAESVLDFLPGMTRNSLAESNIAHRRHLLERLTRTVAEVDN 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d2py8a1	120	RuBisCo chaperone RbcX {Synechocystis sp., strain	100.0
d2peqa1	108	RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002	100.0
d2peoa1	115	RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]	100.0

>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechocystis sp., strain PCC 6803 [TaxId: 1143]

Probab=100.00  E-value=7.1e-45  Score=290.79  Aligned_cols=107  Identities=22%  Similarity=0.361  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcc
Q 027229          110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCD  189 (226)
Q Consensus       110 ~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~l~  189 (226)
                      .||||+|++||||+|||||++||+|||||.|.||++|+++||++|||+||++||+|+|+||+|||+||+|||++..+|++
T Consensus         7 k~tak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~f~~~~~~~DGd~fl~~L~~e~~~lAlRIm~vRe~lAeev~d~l~   86 (120)
T d2py8a1           7 QATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVREDIAESVLDFLP   86 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCCCHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999899987


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 027229          190 HAQMYKAISDENLELMRERLIETVIWPS  217 (226)
Q Consensus       190 ~~m~~~~I~e~N~elMRe~L~eT~~~ps  217 (226)
                       +|++++|+++|+++||+||.+...+++
T Consensus        87 -emv~~~I~~~N~e~~Rq~Ler~t~~~~  113 (120)
T d2py8a1          87 -GMTRNSLAESNIAHRRHLLERLTRTVA  113 (120)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             999999999999999999999666554

>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechococcus sp. pcc 7002 [TaxId: 32049]

Probab=100.00  E-value=7.7e-44  Score=280.33  Aligned_cols=101  Identities=24%  Similarity=0.359  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcc
Q 027229          110 EDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKKCD  189 (226)
Q Consensus       110 ~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~l~  189 (226)
                      .|||++|++||||+|||||++||+|||||.|.||++|+++||++|||+||++||+|+|+||+|||+||+||+++..++++
T Consensus         7 kd~ak~L~~yfTy~AvrvVl~Ql~e~np~~~~wL~~F~~~~~~~DGd~~l~~L~~e~~~lA~RIm~vR~~ya~e~~e~l~   86 (108)
T d2peqa1           7 KETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEFLP   86 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcHhHHHHHHHHhcCCCCCHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999988777776


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 027229          190 HAQMYKAISDENLELMRERLIE  211 (226)
Q Consensus       190 ~~m~~~~I~e~N~elMRe~L~e  211 (226)
                       +|++++|+++|+++||+||..
T Consensus        87 -em~~~~I~~~N~e~~R~~Ler  107 (108)
T d2peqa1          87 -EMVLSQIKQSNGNHRRSLLER  107 (108)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhc
Confidence             999999999999999999974

>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Anabaena sp. [TaxId: 1167]

Probab=100.00  E-value=1.2e-43  Score=281.79  Aligned_cols=104  Identities=38%  Similarity=0.512  Sum_probs=97.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhhhhcCCCCCHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHh
Q 027229          108 SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKEKQDLAERVMITRLHLYGKWVKK  187 (226)
Q Consensus       108 ~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP~~y~WL~~Fls~npl~DGD~fL~~LmrE~~eLAlRIMeVRehla~EW~~~  187 (226)
                      .+.|||++|++||||+|||||++||+|||||.|.||++|++ |||+|||+||++||+|+|+||+|||+||+||++++.++
T Consensus         6 ~~kd~ak~L~~yfTy~AvrvVl~Ql~e~np~~~~wL~~f~~-~~~~DGd~~l~~L~~e~~~lA~RIm~vR~~yae~~~e~   84 (115)
T d2peoa1           6 IAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDLALRIMTVREHIAEEIAEF   84 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-C--CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHc-CCCcCHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999995 89999999999999999999999999999999888888


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhc
Q 027229          188 CDHAQMYKAISDENLELMRERLIETV  213 (226)
Q Consensus       188 l~~~m~~~~I~e~N~elMRe~L~eT~  213 (226)
                      ++ +|++++|+++|+++||+||.++.
T Consensus        85 ~~-e~~~~~I~~~N~elmR~~Ler~t  109 (115)
T d2peoa1          85 LP-EMVVTGIQQANMEKRRQHLERMT  109 (115)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            76 99999999999999999998865