Citrus Sinensis ID: 027273

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MICMYKILLNEYCIHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Secondary Structure (PSIPRED)
cEEEEEEEcccEEEEEcHHHHHcccccEEEEEEEccEEEEEEEEEcccEEEEcccccHHHHHHHHHccccccEEEEEcccccccccEEEEEccEEEEcccccHHHHHHHHHHHccEEEEEEEcccccEEEEEEEEcccEEEcccccHHHHHHHHHHcccccEEEEEcccccccEEEEEEEccEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccEEEHHHHHHHHcccccEEEEcEccEccHHHHcEEcccEEEEEccccHHHHHHHHHHcccccEEEEEccccccHHHHEEEcccEEEEcccccHHHHHHHHHHHccEEEEccEccEccHHHcEEEccccEEEcccccHHHHHHHHHHHcccEEEccEcccEccHHHHEEEccccEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MICMYKILLNEYCIhstfeaeladvipvvktsiggnriigrlcvgnknglllphtttDQELQHLRNSLPDQVVVQRIEERLSALgnciacndhvalahtdldrETEEIIADVLGVEVFRQTIAGNILVGSYcsfsnrgglvhphtsiedlDELSTllqvplvagtvnrgsevigagltvndwtafcgsdttaTELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Flexible Loop (DISEMBL)
MICMYKILLNEYCIHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKlreaqpnaivdemrkslidsyv
Low Complexity Region (SEG)
MICMYKILLNEYCIHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Disordered region (IsUnstruct)
*ICMYKILLNEYCIHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREA******************
Disordered Region (DISOPRED)
MICMYKILLNEYCIHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQ****VDEMRKSLIDSYV
Disordered Region (DISEMBL)
MICMYKILLNEYCIHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Disordered Region (DISPRO)
MICMYKILLNEYCIHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MICMYKILLNEYCIHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9M060	245	Eukaryotic translation in	yes	no	0.986	0.906	0.826	1e-111
P56537	245	Eukaryotic translation in	yes	no	0.977	0.897	0.708	6e-90
Q6GR45	245	Eukaryotic translation in	N/A	no	0.977	0.897	0.704	1e-89
O55135	245	Eukaryotic translation in	yes	no	0.977	0.897	0.704	1e-89
Q3KRD8	245	Eukaryotic translation in	yes	no	0.977	0.897	0.704	2e-89
Q9TU47	245	Eukaryotic translation in	yes	no	0.977	0.897	0.704	7e-89
Q6ZM19	245	Eukaryotic translation in	yes	no	0.977	0.897	0.695	1e-88
A4RSQ6	245	Eukaryotic translation in	yes	no	0.995	0.914	0.643	4e-88
Q59L13	245	Eukaryotic translation in	N/A	no	0.991	0.910	0.655	4e-87
Q12522	245	Eukaryotic translation in	yes	no	0.991	0.910	0.659	6e-87

>sp|Q9M060|IF62_ARATH Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1

 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/231 (82%), Positives = 213/231 (92%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +S FE+ELADVIP+VKTSIGG RIIGRLC GNKNGLL+PH
Sbjct: 15  VFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIGRLCAGNKNGLLVPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VALAHTDLD+ETEEIIADVLG
Sbjct: 75  TTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTDLDKETEEIIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+ SN+GG+VHPHTS+EDL+ELSTLLQVPLVAGTVNRGSEVI 
Sbjct: 135 VEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVPLVAGTVNRGSEVIA 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWT+FCGSDTTATELSVI+S+FKLREAQP++IVDEMRKSLID+YV
Sbjct: 195 AGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSLIDTYV 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|P56537|IF6_HUMAN Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1

 Score =  330 bits (845), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 185/230 (80%), Gaps = 10/230 (4%)

Query: 3   CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
           C  K L N YC+         +S FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct: 15  CFAK-LTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query: 54  HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
           + TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct: 74  NNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query: 114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
            VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct: 134 KVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query: 174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
            AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct: 194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Homo sapiens (taxid: 9606)

>sp|Q6GR45|IF6_XENLA Eukaryotic translation initiation factor 6 OS=Xenopus laevis GN=eif6 PE=2 SV=1

 Score =  329 bits (843), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 162/230 (70%), Positives = 186/230 (80%), Gaps = 10/230 (4%)

Query: 3   CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
           C  K L N YC+         +S FE EL++ IPVV  SI G RIIGR+CVGN++GL++P
Sbjct: 15  CFAK-LTNTYCLVAIGGSENFYSVFEGELSETIPVVHASIAGCRIIGRMCVGNRHGLMVP 73

Query: 54  HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
           + TTDQELQH+RNSLPD V +QR+EERLSALGN IACND+VAL H DLDRETEEI+ADVL
Sbjct: 74  NNTTDQELQHMRNSLPDSVRIQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADVL 133

Query: 114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
            VEVFRQTIA  +LVGSYC+FSN+GGL+HP TSIED DELS+LLQVPLV GTVNRGSEVI
Sbjct: 134 KVEVFRQTIAEQVLVGSYCAFSNQGGLLHPKTSIEDQDELSSLLQVPLVTGTVNRGSEVI 193

Query: 174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
            AG+ VNDW AFCG DTT+TELSVIESVFKL +A P+ I   MR SLIDS
Sbjct: 194 AAGMVVNDWCAFCGLDTTSTELSVIESVFKLSDAHPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Xenopus laevis (taxid: 8355)

>sp|O55135|IF6_MOUSE Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2

 Score =  328 bits (842), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 162/230 (70%), Positives = 185/230 (80%), Gaps = 10/230 (4%)

Query: 3   CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
           C  K L N YC+         +S FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct: 15  CFAK-LTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query: 54  HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
           + TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct: 74  NNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query: 114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
            VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct: 134 KVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query: 174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
            AG+ VNDW AFCG DTT+TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct: 194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Mus musculus (taxid: 10090)

>sp|Q3KRD8|IF6_RAT Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=2 SV=1

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/230 (70%), Positives = 185/230 (80%), Gaps = 10/230 (4%)

Query: 3   CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
           C  K L N YC+         +S FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct: 15  CFAK-LTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query: 54  HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
           + TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct: 74  NNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query: 114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
            VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct: 134 KVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query: 174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
            AG+ VNDW AFCG DTT+TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct: 194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9TU47|IF6_BOVIN Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2

 Score =  326 bits (836), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 162/230 (70%), Positives = 183/230 (79%), Gaps = 10/230 (4%)

Query: 3   CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
           C  K L N YC+         +S FE ELA  IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct: 15  CFAK-LTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query: 54  HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
           + TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct: 74  NNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query: 114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
            VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct: 134 KVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query: 174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
            AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct: 194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Bos taurus (taxid: 9913)

>sp|Q6ZM19|IF6_DANRE Eukaryotic translation initiation factor 6 OS=Danio rerio GN=eif6 PE=2 SV=1

 Score =  325 bits (834), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 185/230 (80%), Gaps = 10/230 (4%)

Query: 3   CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
           C  K L N YC+         +S FE EL++ +PV+  SI G RIIGR+CVGN++GLL+P
Sbjct: 15  CFAK-LTNTYCLVAIGGSENFYSVFEGELSETMPVIHASIAGCRIIGRMCVGNRHGLLVP 73

Query: 54  HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
           + TTDQELQH+RN LPD V +QR+EERLSALGN IACND+VAL H DLDRETEEI+AD L
Sbjct: 74  NNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTL 133

Query: 114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
            VEVFRQT+A  +LVGSYC+FSN+GGLVH  TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct: 134 KVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query: 174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
            AG+ VNDW AFCG DTT+TELSVIESVF+L E QP+AI   MR SLIDS
Sbjct: 194 AAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSLIDS 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Danio rerio (taxid: 7955)

>sp|A4RSQ6|IF6_OSTLU Eukaryotic translation initiation factor 6 OS=Ostreococcus lucimarinus (strain CCE9901) GN=EIF6 PE=3 SV=2

 Score =  323 bits (829), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 150/233 (64%), Positives = 191/233 (81%), Gaps = 9/233 (3%)

Query: 2   ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 52
           I ++  L N YC+         +S FEAEL++ IPV+K S+ G R++GRL VGNK+GLLL
Sbjct: 13  IGVFAALTNAYCLAAVGGSENFYSVFEAELSNEIPVIKASLAGTRLVGRLSVGNKHGLLL 72

Query: 53  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
           P + TDQE+ H+RNSLPD+V+VQR EERLSALGNC+ACNDHVAL H D+D+ETEEIIADV
Sbjct: 73  PTSATDQEVMHIRNSLPDEVIVQRTEERLSALGNCVACNDHVALVHPDIDQETEEIIADV 132

Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 172
           LGVEVFRQ++AGN+LVGS+C FSNRGG+VHP  S++++DELS+LLQVPLVAGT+NRGS+V
Sbjct: 133 LGVEVFRQSVAGNVLVGSFCKFSNRGGMVHPQASVQEVDELSSLLQVPLVAGTINRGSDV 192

Query: 173 IGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           IGAGL VNDW AFCG DTT+TE+ VIES+++L  A  +  V ++R SL+D+ V
Sbjct: 193 IGAGLLVNDWIAFCGLDTTSTEIQVIESIYQLHGADSSGAVRDIRASLLDTLV 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Ostreococcus lucimarinus (strain CCE9901) (taxid: 436017)

>sp|Q59L13|IF6_CANAL Eukaryotic translation initiation factor 6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TIF6 PE=3 SV=1

 Score =  320 bits (820), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 152/232 (65%), Positives = 187/232 (80%), Gaps = 9/232 (3%)

Query: 2   ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 52
           + ++  L N YC+         +S FEAEL DVIP+V T+I G RI+GR+  GN+ GLL+
Sbjct: 13  VGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVGRMTSGNRRGLLV 72

Query: 53  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
           P  TTDQEL HLRNSLPD + +QR+EERLSALGN I CND+VAL H D++RETEE+IADV
Sbjct: 73  PTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPDIERETEELIADV 132

Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 172
           LGVEVFRQTIAGN+LVGSYCS SN+GGLVHP TSI+D +ELS+LLQVPLVAGTVNRGS V
Sbjct: 133 LGVEVFRQTIAGNVLVGSYCSLSNQGGLVHPQTSIQDQEELSSLLQVPLVAGTVNRGSSV 192

Query: 173 IGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 224
           +GAG+ VNDW +  G DTTA ELSVIES+F+L++AQP+AI   +R +LI++Y
Sbjct: 193 VGAGMVVNDWLSVAGLDTTAPELSVIESIFRLQDAQPDAIGGNLRDTLIETY 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q12522|IF6_YEAST Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF6 PE=1 SV=1

 Score =  320 bits (819), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 153/232 (65%), Positives = 186/232 (80%), Gaps = 9/232 (3%)

Query: 2   ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 52
           I ++  L N YC+         +S FEAEL D IP+V T+I G RIIGR+  GN+ GLL+
Sbjct: 13  IGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLV 72

Query: 53  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
           P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DV
Sbjct: 73  PTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDV 132

Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 172
           LGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V
Sbjct: 133 LGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSV 192

Query: 173 IGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 224
           +GAG+ VND+ A  G DTTA ELSVIES+F+L++AQP +I   +R +LI++Y
Sbjct: 193 VGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIETY 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by the GTPase RIA1/EFL1 and by SDO1. Also required for pre-rRNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
118480999	245	unknown [Populus trichocarpa]	0.986	0.906	0.883	1e-114
225438420	245	PREDICTED: eukaryotic translation initia	0.986	0.906	0.874	1e-113
356530991	245	PREDICTED: eukaryotic translation initia	0.986	0.906	0.874	1e-113
356559971	245	PREDICTED: eukaryotic translation initia	0.986	0.906	0.874	1e-112
356576589	245	PREDICTED: eukaryotic translation initia	0.986	0.906	0.870	1e-112
224109868	245	predicted protein [Populus trichocarpa]	0.986	0.906	0.874	1e-112
255646745	245	unknown [Glycine max]	0.986	0.906	0.870	1e-112
255583438	245	translation initiation factor, putative	0.986	0.906	0.865	1e-112
357121765	245	PREDICTED: eukaryotic translation initia	0.986	0.906	0.857	1e-110
224094250	245	predicted protein [Populus trichocarpa]	0.995	0.914	0.836	1e-110

>gi|118480999|gb|ABK92453.1| unknown [Populus trichocarpa]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/231 (88%), Positives = 215/231 (93%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +STFEAELADVIPVVKTSI G RIIGRLC GNKNGLL+PH
Sbjct: 15  VFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIGRLCAGNKNGLLVPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQELQHLRNSLPDQVVVQRI+E+LSALGNCIACNDHVALAHTDLDRETEEIIADVLG
Sbjct: 75  TTTDQELQHLRNSLPDQVVVQRIDEKLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG
Sbjct: 135 VEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLREA+P+AIVDEMRKSLIDSYV
Sbjct: 195 AGITVNDWTAFCGSDTTATELSVIESVFKLREARPSAIVDEMRKSLIDSYV 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438420|ref|XP_002276166.1| PREDICTED: eukaryotic translation initiation factor 6-2 isoform 1 [Vitis vinifera] gi|147840016|emb|CAN77181.1| hypothetical protein VITISV_038707 [Vitis vinifera] gi|296082575|emb|CBI21580.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/231 (87%), Positives = 213/231 (92%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +S FE+ELADVIPVVKTSIGG RIIGRLC GNK GLLLPH
Sbjct: 15  VFSKLTNAYCLVAIGGSESFYSVFESELADVIPVVKTSIGGTRIIGRLCAGNKKGLLLPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQELQHLRNSLPDQVVVQRIEE+LSALGNCIACNDHVALAHTDLDRETEE++ADVLG
Sbjct: 75  TTTDQELQHLRNSLPDQVVVQRIEEKLSALGNCIACNDHVALAHTDLDRETEEMVADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 
Sbjct: 135 VEVFRQTIAGNILVGSYCTFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIA 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLREAQP+AIVDEMRKSLIDSYV
Sbjct: 195 AGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530991|ref|XP_003534062.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356530993|ref|XP_003534063.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/231 (87%), Positives = 212/231 (91%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +S FEAELADVIPVVKTSIGG RIIGRLC GNKNGLLLPH
Sbjct: 15  VFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQELQ LRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTDLDRETEE+IADVLG
Sbjct: 75  TTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 
Sbjct: 135 VEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIA 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLREAQP+AIVDEMRKSLID+YV
Sbjct: 195 AGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559971|ref|XP_003548269.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356559973|ref|XP_003548270.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/231 (87%), Positives = 212/231 (91%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +S FEAELA VIPVVKTSIGG RIIGRLC GNKNGLLLPH
Sbjct: 15  VFSKLTNAYCLVAIGGSESFYSVFEAELAGVIPVVKTSIGGTRIIGRLCAGNKNGLLLPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTDLDRETEE+IADVLG
Sbjct: 75  TTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 
Sbjct: 135 VEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIA 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLREAQP+AIVDEMRKSLID+YV
Sbjct: 195 AGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576589|ref|XP_003556413.1| PREDICTED: eukaryotic translation initiation factor 6-2-like [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/231 (87%), Positives = 212/231 (91%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +S FEAELADVIPVVKTSIGG RI+GRLCVGNKNGLLLPH
Sbjct: 15  VFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIVGRLCVGNKNGLLLPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           T TDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVAL HTDLD+ETEE+IADVLG
Sbjct: 75  TITDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQT+AGNILVGSYC FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 
Sbjct: 135 VEVFRQTVAGNILVGSYCVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIA 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLREAQP+AIVDEMRKSLID+YV
Sbjct: 195 AGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109868|ref|XP_002315337.1| predicted protein [Populus trichocarpa] gi|222864377|gb|EEF01508.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/231 (87%), Positives = 213/231 (92%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +STFEAELADVIPVVKTSI G RIIGRLC GNKNGLL+PH
Sbjct: 15  VFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIGRLCAGNKNGLLVPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQ L HLRNSLPDQVVVQRI+E+LSALGNCIACNDHVALAHTDLDRETEEIIADVLG
Sbjct: 75  TTTDQGLGHLRNSLPDQVVVQRIDEKLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG
Sbjct: 135 VEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLREA+P+AIVDEMRKSLIDSYV
Sbjct: 195 AGITVNDWTAFCGSDTTATELSVIESVFKLREARPSAIVDEMRKSLIDSYV 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646745|gb|ACU23846.1| unknown [Glycine max]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/231 (87%), Positives = 211/231 (91%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +S FEAELADVIPVVKTSIGG RIIGRLC GNKNGLLLPH
Sbjct: 15  VFSKLTNTYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQELQ LRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTDLDRETEE+IADVLG
Sbjct: 75  TTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDEL TLLQVPLVAGTVNRGSEVI 
Sbjct: 135 VEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELFTLLQVPLVAGTVNRGSEVIA 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLREAQP+AIVDEMRKSLID+YV
Sbjct: 195 AGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583438|ref|XP_002532478.1| translation initiation factor, putative [Ricinus communis] gi|223527803|gb|EEF29902.1| translation initiation factor, putative [Ricinus communis]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 210/231 (90%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +S FE+ELADVIPVVKTSI G RIIGRLC GNKNGLLLPH
Sbjct: 15  VFSKLTNAYCLVAIGGSESFYSAFESELADVIPVVKTSIAGTRIIGRLCAGNKNGLLLPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQELQHLRNSLPD VVVQRIEERLSALGNCIACNDHVAL HTDLD+ETEE+IADVLG
Sbjct: 75  TTTDQELQHLRNSLPDNVVVQRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+ SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 
Sbjct: 135 VEVFRQTIAGNILVGSYCALSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIA 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLREAQP+AIVDEMRKSLIDSYV
Sbjct: 195 AGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357121765|ref|XP_003562588.1| PREDICTED: eukaryotic translation initiation factor 6-2-like [Brachypodium distachyon]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/231 (85%), Positives = 210/231 (90%), Gaps = 9/231 (3%)

Query: 4   MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           ++  L N YC+         +STFE+ELADVIPVVKTSIGG RIIGRLCVGNKNGLLLPH
Sbjct: 15  VFSKLTNAYCLVAIGGSENFYSTFESELADVIPVVKTSIGGTRIIGRLCVGNKNGLLLPH 74

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           TTTDQELQHLRN LPDQVVVQRI+ERLSALGNCI+CNDHVAL H DLD+ TEE+IADVLG
Sbjct: 75  TTTDQELQHLRNCLPDQVVVQRIDERLSALGNCISCNDHVALTHPDLDKATEELIADVLG 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEVFRQTIAGNILVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 
Sbjct: 135 VEVFRQTIAGNILVGSYCTFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIA 194

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           AG+TVNDWTAFCGSDTTATELSVIESVFKLRE QP AIVD+MRKSLIDSYV
Sbjct: 195 AGMTVNDWTAFCGSDTTATELSVIESVFKLREGQPTAIVDDMRKSLIDSYV 245

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094250|ref|XP_002310109.1| predicted protein [Populus trichocarpa] gi|118489313|gb|ABK96461.1| unknown [Populus trichocarpa x Populus deltoides] gi|222853012|gb|EEE90559.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/233 (83%), Positives = 212/233 (90%), Gaps = 9/233 (3%)

Query: 2   ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 52
           + ++  L N YC+         +STFEAEL DVIPVVKTSIGG+RIIGRLC GNKNG+LL
Sbjct: 13  VGVFSKLTNAYCLVAIGGSENFYSTFEAELGDVIPVVKTSIGGSRIIGRLCAGNKNGILL 72

Query: 53  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
           PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGN +ACNDHVAL HTDLD+ETEE+I+DV
Sbjct: 73  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNGVACNDHVALTHTDLDKETEEMISDV 132

Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 172
           LGVEVFRQT+AGN+LVGSYC+FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGT+NRGSEV
Sbjct: 133 LGVEVFRQTVAGNVLVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTINRGSEV 192

Query: 173 IGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
           I AGLTVNDW AFCG+DTTATELSVIESVFKLREAQPNAIV+EMR SLIDSYV
Sbjct: 193 IAAGLTVNDWAAFCGADTTATELSVIESVFKLREAQPNAIVNEMRNSLIDSYV 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2078921	245	eIF6A "AT3G55620" [Arabidopsis	0.986	0.906	0.826	9.1e-100
UNIPROTKB|P56537	245	EIF6 "Eukaryotic translation i	0.977	0.897	0.708	1.2e-81
MGI|MGI:1196288	245	Eif6 "eukaryotic translation i	0.977	0.897	0.704	2.5e-81
RGD|1305373	245	Eif6 "eukaryotic translation i	0.977	0.897	0.704	2.5e-81
UNIPROTKB|I3L8I5	211	EIF6 "Uncharacterized protein"	0.928	0.990	0.751	4.1e-81
UNIPROTKB|F1NGL6	242	EIF6 "Eukaryotic translation i	0.973	0.904	0.707	6.6e-81
UNIPROTKB|Q9TU47	245	EIF6 "Eukaryotic translation i	0.977	0.897	0.704	6.6e-81
ZFIN|ZDB-GENE-031118-110	245	eif6 "eukaryotic translation i	0.977	0.897	0.695	3.7e-80
UNIPROTKB|E2R1S5	242	EIF6 "Eukaryotic translation i	0.973	0.904	0.703	4.7e-80
POMBASE|SPCC1919.09	244	tif6 "translation initiation f	0.928	0.856	0.714	4.2e-79

TAIR|locus:2078921 eIF6A "AT3G55620" [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 191/231 (82%), Positives = 213/231 (92%)

Query:     4 MYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
             ++  L N YC+         +S FE+ELADVIP+VKTSIGG RIIGRLC GNKNGLL+PH
Sbjct:    15 VFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIGRLCAGNKNGLLVPH 74

Query:    55 TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
             TTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VALAHTDLD+ETEEIIADVLG
Sbjct:    75 TTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTDLDKETEEIIADVLG 134

Query:   115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
             VEVFRQTIAGNILVGSYC+ SN+GG+VHPHTS+EDL+ELSTLLQVPLVAGTVNRGSEVI 
Sbjct:   135 VEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVPLVAGTVNRGSEVIA 194

Query:   175 AGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225
             AG+TVNDWT+FCGSDTTATELSVI+S+FKLREAQP++IVDEMRKSLID+YV
Sbjct:   195 AGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSLIDTYV 245

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

UNIPROTKB|P56537 EIF6 "Eukaryotic translation initiation factor 6" [Homo sapiens (taxid:9606)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 163/230 (70%), Positives = 185/230 (80%)

Query:     3 CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
             C  K L N YC+         +S FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct:    15 CFAK-LTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query:    54 HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
             + TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct:    74 NNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query:   114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
              VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct:   134 KVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query:   174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
              AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct:   194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1196288 Eif6 "eukaryotic translation initiation factor 6" [Mus musculus (taxid:10090)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 162/230 (70%), Positives = 185/230 (80%)

Query:     3 CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
             C  K L N YC+         +S FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct:    15 CFAK-LTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query:    54 HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
             + TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct:    74 NNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query:   114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
              VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct:   134 KVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query:   174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
              AG+ VNDW AFCG DTT+TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct:   194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDS 243

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005638 "lamin filament" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005882 "intermediate filament" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

RGD|1305373 Eif6 "eukaryotic translation initiation factor 6" [Rattus norvegicus (taxid:10116)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 162/230 (70%), Positives = 185/230 (80%)

Query:     3 CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
             C  K L N YC+         +S FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct:    15 CFAK-LTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query:    54 HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
             + TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct:    74 NNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query:   114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
              VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct:   134 KVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query:   174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
              AG+ VNDW AFCG DTT+TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct:   194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDS 243

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

UNIPROTKB|I3L8I5 EIF6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 157/209 (75%), Positives = 177/209 (84%)

Query:    15 HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVV 74
             +S FE ELAD IPVV  SI G RIIGR+CVGN++GLL+P+ TTDQELQH+RN LPD V +
Sbjct:     1 YSVFEGELADTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQI 60

Query:    75 QRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 134
             +R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQT+A  +LVGSYC F
Sbjct:    61 RRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLRVEVFRQTVADQVLVGSYCVF 120

Query:   135 SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 194
             SN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+TE
Sbjct:   121 SNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTE 180

Query:   195 LSVIESVFKLREAQPNAIVDEMRKSLIDS 223
             LSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct:   181 LSVVESVFKLNEAQPSTIATSMRDSLIDS 209

GO:0005638 "lamin filament" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

UNIPROTKB|F1NGL6 EIF6 "Eukaryotic translation initiation factor 6" [Gallus gallus (taxid:9031)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 162/229 (70%), Positives = 183/229 (79%)

Query:     3 CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
             C  K L N YC+         +S FE EL   IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct:    15 CFAK-LTNAYCLVAIGGSENFYSVFEGELFGTIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query:    54 HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
              +TTDQELQH+RNSLPD V +QR+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct:    74 SSTTDQELQHIRNSLPDSVRIQRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query:   114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
              VEVFRQT+A  +LVGSYC FSN+GG+VHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct:   134 KVEVFRQTVADQVLVGSYCVFSNQGGIVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query:   174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLID 222
             GAG+ VNDW AFCG DTT+TELSVIES+FKL EAQP+ I   MR SLID
Sbjct:   194 GAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATNMRDSLID 242

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

UNIPROTKB|Q9TU47 EIF6 "Eukaryotic translation initiation factor 6" [Bos taurus (taxid:9913)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 162/230 (70%), Positives = 183/230 (79%)

Query:     3 CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
             C  K L N YC+         +S FE ELA  IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct:    15 CFAK-LTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query:    54 HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
             + TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct:    74 NNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query:   114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
              VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct:   134 KVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query:   174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
              AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct:   194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

ZFIN|ZDB-GENE-031118-110 eif6 "eukaryotic translation initiation factor 6" [Danio rerio (taxid:7955)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 160/230 (69%), Positives = 185/230 (80%)

Query:     3 CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
             C  K L N YC+         +S FE EL++ +PV+  SI G RIIGR+CVGN++GLL+P
Sbjct:    15 CFAK-LTNTYCLVAIGGSENFYSVFEGELSETMPVIHASIAGCRIIGRMCVGNRHGLLVP 73

Query:    54 HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
             + TTDQELQH+RN LPD V +QR+EERLSALGN IACND+VAL H DLDRETEEI+AD L
Sbjct:    74 NNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTL 133

Query:   114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
              VEVFRQT+A  +LVGSYC+FSN+GGLVH  TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct:   134 KVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query:   174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
              AG+ VNDW AFCG DTT+TELSVIESVF+L E QP+AI   MR SLIDS
Sbjct:   194 AAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSLIDS 243

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

UNIPROTKB|E2R1S5 EIF6 "Eukaryotic translation initiation factor 6" [Canis lupus familiaris (taxid:9615)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 161/229 (70%), Positives = 182/229 (79%)

Query:     3 CMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 53
             C  K L N YC+         +S FE ELAD IPVV  SI G RIIGR+CVGN++GLL+P
Sbjct:    15 CFAK-LTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIGRMCVGNRHGLLVP 73

Query:    54 HTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
             + TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL
Sbjct:    74 NNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVL 133

Query:   114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
              VEVFRQT+A  +LVGSY  FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI
Sbjct:   134 KVEVFRQTVADQVLVGSYSVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVI 193

Query:   174 GAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLID 222
              AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I   MR SLID
Sbjct:   194 AAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLID 242

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

POMBASE|SPCC1919.09 tif6 "translation initiation factor eIF6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 150/210 (71%), Positives = 181/210 (86%)

Query:    15 HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVV 74
             +S FEAEL DV+PVV T+IGG RIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +
Sbjct:    35 YSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKI 94

Query:    75 QRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSF 134
             QR++ERLSALGN +ACND+VAL H D++RETEEIIADVL VEVFRQT+AGN+L GSYC+ 
Sbjct:    95 QRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCAL 154

Query:   135 SNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 194
             SN+G LVHP TSI++ DELS+LLQVPLVAGT+NRGS+VIGAGL VNDW AF G DTTATE
Sbjct:   155 SNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATE 214

Query:   195 LSVIESVFKLREAQPNAIVDEMRKSLIDSY 224
             L+V ES+FKL++AQP+AI+   R +L++SY
Sbjct:   215 LAVCESIFKLQDAQPSAIISN-RDTLVESY 243

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56538	IF6_DROME	No assigned EC number	0.6695	0.9822	0.9020	yes	no
P56537	IF6_HUMAN	No assigned EC number	0.7086	0.9777	0.8979	yes	no
Q6GR45	IF6_XENLA	No assigned EC number	0.7043	0.9777	0.8979	N/A	no
Q9TU47	IF6_BOVIN	No assigned EC number	0.7043	0.9777	0.8979	yes	no
O55135	IF6_MOUSE	No assigned EC number	0.7043	0.9777	0.8979	yes	no
Q2UTN7	IF6_ASPOR	No assigned EC number	0.6367	0.9911	0.9028	yes	no
A7ANL7	IF6_BABBO	No assigned EC number	0.5443	0.9955	0.8995	N/A	no
A4RSQ6	IF6_OSTLU	No assigned EC number	0.6437	0.9955	0.9142	yes	no
B9PVB9	IF6_TOXGO	No assigned EC number	0.6127	0.9866	0.8915	N/A	no
Q9M060	IF62_ARATH	No assigned EC number	0.8268	0.9866	0.9061	yes	no
B8MDN4	IF6_TALSN	No assigned EC number	0.6324	0.9911	0.9028	N/A	no
Q551M2	IF6_DICDI	No assigned EC number	0.6790	0.9155	0.8442	yes	no
C9SV08	IF6_VERA1	No assigned EC number	0.6437	0.9911	0.9065	N/A	no
Q6ZM19	IF6_DANRE	No assigned EC number	0.6956	0.9777	0.8979	yes	no
Q7S2W6	IF6_NEUCR	No assigned EC number	0.6523	0.9911	0.9065	N/A	no
Q8SS47	IF6_ENCCU	No assigned EC number	0.4977	0.9466	0.8838	yes	no
Q3ITD5	IF6_NATPD	No assigned EC number	0.3571	0.8355	0.8506	yes	no
Q59L13	IF6_CANAL	No assigned EC number	0.6551	0.9911	0.9102	N/A	no
Q5ASA6	IF6_EMENI	No assigned EC number	0.6495	0.9911	0.9028	yes	no
D1ZG64	IF6_SORMK	No assigned EC number	0.6523	0.9911	0.9065	N/A	no
Q245F2	IF6_TETTS	No assigned EC number	0.6586	0.9244	0.8489	N/A	no
O81920	IF6_BETVU	No assigned EC number	0.7821	0.7555	0.8808	N/A	no
O62106	IF6_CAEEL	No assigned EC number	0.5689	0.9866	0.9024	yes	no
Q4E097	IF61_TRYCC	No assigned EC number	0.5726	0.9777	0.8870	N/A	no
B0EMY3	IF6_ENTDS	No assigned EC number	0.6037	0.9066	0.8535	N/A	no
Q3KRD8	IF6_RAT	No assigned EC number	0.7043	0.9777	0.8979	yes	no
Q12522	IF6_YEAST	No assigned EC number	0.6594	0.9911	0.9102	yes	no
O94476	IF6_SCHPO	No assigned EC number	0.6637	0.9866	0.9098	yes	no
Q98RM8	IF6_GUITH	No assigned EC number	0.3798	0.8844	0.8728	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotgun sequence); (245 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)			•	•	•		•		0.978
	GSVIVG00016251001	SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_12, whole genome shot [...] (143 aa)	•			•			•		0.924
	GSVIVG00030059001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (146 aa)	•			•			•		0.921
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.906
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•		•		0.897
	GSVIVG00016611001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (120 aa)	•			•			•		0.883
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•	•		•		0.860
	GSVIVG00021667001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (168 aa)	•			•	•		•		0.859
	GSVIVG00019030001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)				•			•		0.854
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•		•		0.852

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
PTZ00136	247	PTZ00136, PTZ00136, eukaryotic translation initiat	1e-134
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	1e-107
smart00654	200	smart00654, eIF6, translation initiation factor 6	5e-99
pfam01912	197	pfam01912, eIF-6, eIF-6 family	2e-93
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	7e-84
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	6e-72
PRK04046	222	PRK04046, PRK04046, translation initiation factor	8e-60
PRK04046	222	PRK04046, PRK04046, translation initiation factor	1e-11
pfam01912	197	pfam01912, eIF-6, eIF-6 family	6e-10
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	3e-08
smart00654	200	smart00654, eIF6, translation initiation factor 6	3e-07

>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like protein; Provisional

 Score =  377 bits (970), Expect = e-134
 Identities = 159/228 (69%), Positives = 184/228 (80%), Gaps = 11/228 (4%)

Query: 8   LLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTD 58
           L N YC+         +S FE+ELA  IPVV T+IGG R+IGRL VGN+ GLL+P   TD
Sbjct: 19  LTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTD 78

Query: 59  QELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVF 118
           QELQHLRNSLPD V VQR+EERLSALGNCIACND+VAL H DLDRETEEII DVLGVEVF
Sbjct: 79  QELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVF 138

Query: 119 RQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLT 178
           R TIAGN+LVG+YC F+N+GGLVHP TS++++DELS+LLQVPLVAGTVNRGS+VIGAGL 
Sbjct: 139 RTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLV 198

Query: 179 VNDWTAFCGSDTTATELSVIESVFKLREAQ--PNAIVDEMRKSLIDSY 224
           VNDW AFCG DTTATE+SVIE +FKLR A       + ++R SLID+ 
Sbjct: 199 VNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRSSLIDTL 246

Length = 247

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score =  308 bits (791), Expect = e-107
 Identities = 126/211 (59%), Positives = 148/211 (70%), Gaps = 11/211 (5%)

Query: 2   ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 52
           I ++    N YC+          S FE EL   +PVV+T+IGG+R++G L VGN NGLLL
Sbjct: 12  IGVFAKATNSYCLVPPGGDENFVSKFEEEL--GVPVVRTTIGGSRLVGSLTVGNSNGLLL 69

Query: 53  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
           PHTTTDQELQH+RNSLPD+V V R++E LSALGN I CNDH AL H DL +E EEII DV
Sbjct: 70  PHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDV 129

Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 172
           LGVEVFR TIAG   VGS    +N+GGLVHP TS E+L+ELS L +VP+VAGTVN GS+ 
Sbjct: 130 LGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQY 189

Query: 173 IGAGLTVNDWTAFCGSDTTATELSVIESVFK 203
           +GAGL  N   A  GSDTT  ELS IE    
Sbjct: 190 VGAGLVANSKGAVVGSDTTGPELSRIEDALG 220

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score =  286 bits (733), Expect = 5e-99
 Identities = 130/192 (67%), Positives = 145/192 (75%), Gaps = 11/192 (5%)

Query: 2   ICMYKILLNEYCIH---------STFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 52
           I +Y  L N YC+          S  E  L   +PVV TSIGG+R+IGRL VGN NGLL+
Sbjct: 11  IGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLV 68

Query: 53  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
           P+TTTDQELQHLRNSLPD V VQR+EERL+ALGN I CNDH ALA  DL +ETEEII+DV
Sbjct: 69  PNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDV 128

Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 172
           LGVEVFR TIAGNI VGSYC  +N+GGLVHP TS E+L ELS LL VPLVAGTVN GSEV
Sbjct: 129 LGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPLVAGTVNFGSEV 188

Query: 173 IGAGLTVNDWTA 184
           +GAGL  ND  A
Sbjct: 189 VGAGLVANDNGA 200

Length = 200

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score =  271 bits (695), Expect = 2e-93
 Identities = 106/184 (57%), Positives = 128/184 (69%), Gaps = 13/184 (7%)

Query: 10  NEYCIH---------STFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE 60
           N+Y +          S  E EL   + VV+TSI G+R++G L VGN NGLL+P T TD+E
Sbjct: 18  NDYALVPPGLSEEFYSVIEEELG--VEVVETSIAGSRLVGSLTVGNSNGLLVPSTATDEE 75

Query: 61  LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ 120
           L HL+ SL   V V+R+EE+L+ALGN I  ND  AL H DL RETEEIIADVLGVEVFR 
Sbjct: 76  LDHLKESL--DVNVERLEEKLTALGNVILANDKGALVHPDLSRETEEIIADVLGVEVFRG 133

Query: 121 TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 180
           TIAGN  VGS    +N+GGLVHP  + E+L+ELS LL VP+ AGTVNRGS ++GAGL  N
Sbjct: 134 TIAGNKTVGSAGVATNKGGLVHPDATEEELEELSELLGVPVDAGTVNRGSPLVGAGLVAN 193

Query: 181 DWTA 184
           D  A
Sbjct: 194 DKGA 197

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score =  248 bits (635), Expect = 7e-84
 Identities = 96/210 (45%), Positives = 122/210 (58%), Gaps = 9/210 (4%)

Query: 2   ICMYKILLNEYCI-----HSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           I +Y      Y +        F   + +V  +PVV+T+I G+R++G L  GN NGLL+P+
Sbjct: 14  IGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPY 73

Query: 55  TTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
              D+EL+ L+N     V V  +  +L+ALGN I  ND  AL H DL  E E+ I DVLG
Sbjct: 74  GVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLG 131

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIG 174
           VEV R TIAG   VGS    +N+GGLVHP TS E+L+ELS L  VP+  GTVN GS  +G
Sbjct: 132 VEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPVDVGTVNFGSPYVG 191

Query: 175 AGLTVNDWTAFCGSDTTATELSVIESVFKL 204
           AGL  N   A  G DTT  EL+ IE     
Sbjct: 192 AGLVANSKGALVGEDTTGPELARIEDALGF 221

Length = 222

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score =  217 bits (555), Expect = 6e-72
 Identities = 111/211 (52%), Positives = 141/211 (66%), Gaps = 12/211 (5%)

Query: 2   ICMYKILLNEYCI-----HSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54
           I +Y  +  EY +        F +   +   +PV+ T+I G+ ++G L VGN  GLL+  
Sbjct: 10  IGVYAKVTEEYALVPVNGSENFYSAFEEELEVPVLHTTIAGSSLVGALTVGNSRGLLVS- 68

Query: 55  TTTDQELQHLRNSLPDQVV-VQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVL 113
              DQ L H  +SLPD +V VQRIEERL+ALGN I CND+ ALA  +LDR+TEE+I+DVL
Sbjct: 69  ---DQVLDHELDSLPDSLVKVQRIEERLTALGNLILCNDYGALASPELDRDTEELISDVL 125

Query: 114 GVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 173
           GVEVFR TIAG I VGSY   +NRGGLVHP TS+++ +ELS+LL V LVAGTVNRG+ V+
Sbjct: 126 GVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVV 185

Query: 174 GAGLTVNDWTAFCGSDTTATELSVIESVFKL 204
           GA +  N   A  G DTT  ELS+IE    L
Sbjct: 186 GACMVANSKGAVVGLDTTGPELSIIEEALGL 216

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score =  186 bits (476), Expect = 8e-60
 Identities = 80/195 (41%), Positives = 113/195 (57%), Gaps = 4/195 (2%)

Query: 14  IHSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71
           +      ++ +   + VV+T+I G+ ++G L  GN NG+L+P    D+EL+ L+ +L   
Sbjct: 30  LDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEAL--D 87

Query: 72  VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSY 131
           + V+ +  +L+ALGN I  ND  AL H +L  E  ++I D LGVEV R TIAG   VGS 
Sbjct: 88  LNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSA 147

Query: 132 CSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 191
              +N+GGLVHP  + E+L  L  L +V +  GTVN GS ++G+GL  N   A  GSDTT
Sbjct: 148 GVVTNKGGLVHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTT 207

Query: 192 ATELSVIESVFKLRE 206
             EL  IE      E
Sbjct: 208 GPELGRIEDALGFIE 222

Length = 222

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 88  IACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSI 147
               D  AL   DLD +T E I + LGVEV   TIAG+ LVGS  + ++ G LV      
Sbjct: 17  ARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLD 76

Query: 148 EDLDELSTLLQVP--LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFK 203
           E+L+ L   L +   ++   +     +I A    ND  A    + +     VIE    
Sbjct: 77  EELELLKEALDLNVEVLPSKLTALGNLILA----NDKGALVHPELSDEARKVIEDTLG 130

Length = 222

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score = 56.4 bits (137), Expect = 6e-10
 Identities = 27/79 (34%), Positives = 38/79 (48%)

Query: 84  LGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHP 143
           +G      +  AL    L  E   +I + LGVEV   +IAG+ LVGS    ++ G LV  
Sbjct: 10  IGVFARATNDYALVPPGLSEEFYSVIEEELGVEVVETSIAGSRLVGSLTVGNSNGLLVPS 69

Query: 144 HTSIEDLDELSTLLQVPLV 162
             + E+LD L   L V + 
Sbjct: 70  TATDEELDHLKESLDVNVE 88

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 72  VVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGS 130
           ++++R+  E    +G      +  AL    LD +  ++I +VLGV V   TIAG+ LVG+
Sbjct: 1   MMIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGA 60

Query: 131 YCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 190
             + ++ G LV      E+L  L   L   +    +      +G  +  ND  A    D 
Sbjct: 61  LTAGNSNGLLVPYGVRDEELRRLKNAL--GVEVLILPTKLNALGNLILANDKGALVHPDL 118

Query: 191 TATELSVIESV 201
           +      IE V
Sbjct: 119 SDEAEKEIEDV 129

Length = 222

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 79  ERLSALGNC-----IACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCS 133
           +RLS  G+      I   +   L     D     +I +VLGV V   +I G+ L+G    
Sbjct: 1   DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTV 60

Query: 134 FSNRGGLVHPHTSIED-LDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTA 192
             N  GL+ P+T+ +  L  L   L   +    V      +G  +  ND  A    D + 
Sbjct: 61  -GNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSK 119

Query: 193 TELSVIESV 201
               +I  V
Sbjct: 120 ETEEIISDV 128

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	99.97
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	99.88

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=4.5e-78  Score=533.15  Aligned_cols=225  Identities=71%  Similarity=1.124  Sum_probs=220.4

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      +||||+++||+|||         ++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|+++||++||++
T Consensus        12 ~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~d~   91 (247)
T PTZ00136         12 DIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNSLPDS   91 (247)
T ss_pred             cEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHHHHHHHHhCcCC
Confidence            59999999999999         899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|+++++|++|+|||++|||++|||||++++++++.|+|+|||||++++|||+++|||++++||+||||||+++++|++
T Consensus        92 v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tIag~~lVGs~~v~Nn~G~LVhP~~s~ee~~  171 (247)
T PTZ00136         92 VKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMD  171 (247)
T ss_pred             ccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEecCCceEEEEEEEeCcEEEECCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC--CCCchhHHHHHHHhhhhcC
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE--AQPNAIVDEMRKSLIDSYV  225 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~--~~~~~~~~~~~~~~~~~~~  225 (225)
                      +|+|+||||+.+||||+|+++||||++|||||++|||+||++|+++||++||++.  ..+..+..+||++|||++.
T Consensus       172 ~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~~~~  247 (247)
T PTZ00136        172 ELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRSSLIDTLA  247 (247)
T ss_pred             HHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccCCchhhHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999988  5566688999999999974

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.5e-72  Score=478.13  Aligned_cols=224  Identities=79%  Similarity=1.205  Sum_probs=221.5

Q ss_pred             eeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCe
Q 027273            2 ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQV   72 (225)
Q Consensus         2 IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v   72 (225)
                      ||+|.++||.|||         |+.||++|++.+|+++|+|+|+|+||+||+||+||||||+++|||||+|||++|||.+
T Consensus        13 iGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnSLPd~V   92 (245)
T KOG3185|consen   13 IGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNSLPDEV   92 (245)
T ss_pred             eeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhcCCcce
Confidence            8999999999999         9999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHH
Q 027273           73 VVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDE  152 (225)
Q Consensus        73 ~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~  152 (225)
                      .++|++||++|+||.|+|||++||||||+++|++++|+|+|+|||+|.+||+.++|||||+.+|+|++|||.++.|++++
T Consensus        93 ~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqtia~n~LvGsyc~lsnqG~lVhp~Ts~e~q~E  172 (245)
T KOG3185|consen   93 VIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIAQNSLVGSYCALSNQGGLVHPRTSVEDQDE  172 (245)
T ss_pred             eeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecccCCceeeeeEEEcCCCceecCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhhcC
Q 027273          153 LSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV  225 (225)
Q Consensus       153 l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~~  225 (225)
                      |+.+|+||+..||+|+|+..+|+|+++|||-+++|.+||..||..||.+|++.+++|+.+..+||++|||++.
T Consensus       173 ls~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiFkL~~aqp~~i~~~~R~~lid~~~  245 (245)
T KOG3185|consen  173 LSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIFKLNEAQPSSISSELRDTLIDSYV  245 (245)
T ss_pred             HHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHHhhcccCchhHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999998888899999999999874

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.3e-71  Score=478.03  Aligned_cols=200  Identities=48%  Similarity=0.686  Sum_probs=197.3

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      +||||+++||+||+         ++.|+|.|+  +|+++|+|+||+++|+|++|||||+|||+.++|+|+++||+  +++
T Consensus        13 ~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~--~~~   88 (222)
T COG1976          13 NIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKN--ALG   88 (222)
T ss_pred             ceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcc--cCC
Confidence            59999999999999         899999999  99999999999999999999999999999999999999998  678


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|.++++|+||+||.|+|||++||+||++++++.|.|+|+|||||+|++|||.++|||+++.||||+||||++|++|+|
T Consensus        89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtIag~~tVGsa~v~tnkG~LvhP~~s~~Ele  168 (222)
T COG1976          89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELE  168 (222)
T ss_pred             ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEecCccceeeEEEEecCcceeCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL  204 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v  204 (225)
                      +|+++||||+..||+|+|+++||+|+||||||++||.+||+|||.|||++|++
T Consensus       169 ~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rIe~aLg~  221 (222)
T COG1976         169 ELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF  221 (222)
T ss_pred             HHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999984

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=2.9e-67  Score=451.99  Aligned_cols=181  Identities=54%  Similarity=0.828  Sum_probs=157.9

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      .||||+++||+|||         ++.|+++|+  +|+++|+|+||++||+|++||+||||||++++|+|+++||+++| +
T Consensus        10 ~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~-~   86 (199)
T PF01912_consen   10 NIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP-D   86 (199)
T ss_dssp             -HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS--T
T ss_pred             CEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC-C
Confidence            48999999999999         899999999  99999999999999999999999999999999999999999999 9


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|+++++|+||+||+|+|||++|++||+++++++|.|+|+|||||++++||+.++|||++++||+|+||||+++++|++
T Consensus        87 v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v~tn~G~LvhP~~s~eEl~  166 (199)
T PF01912_consen   87 VNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAVATNKGGLVHPDASEEELE  166 (199)
T ss_dssp             SEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEEE-SSEEEE-TT--HHHHH
T ss_pred             ceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEecCcccceeeEEEeCcEEEECCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceE
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA  184 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~  184 (225)
                      +|+++|+||+..||||+|+++||||++|||||+
T Consensus       167 ~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~  199 (199)
T PF01912_consen  167 ELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA  199 (199)
T ss_dssp             HHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred             HHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence            999999999999999999999999999999997

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=7.3e-60  Score=411.96  Aligned_cols=201  Identities=63%  Similarity=0.934  Sum_probs=193.4

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      +||+|+++||+|||         .+.|+|+|+  +++++++|+||++||+|++||+||+|||+.++|+|+++||+.|+.+
T Consensus        11 ~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~   88 (220)
T cd00527          11 NIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDE   88 (220)
T ss_pred             CeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCC
Confidence            59999999999999         889999999  9999999999999999999999999999999999999999998766


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      +.+.+...+.+++||++++||++||+||.++++.++.|+|.|+|+|++.+|++.+.+|+++++||+||||||+++++|++
T Consensus        89 V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~  168 (220)
T cd00527          89 VGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELE  168 (220)
T ss_pred             eEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEECCCCCHHHHH
Confidence            66655555555999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhC
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFK  203 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~  203 (225)
                      .|+|+||||+.+||+|+|.++|||+++|||||++|||+||++|+++||++||
T Consensus       169 ~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~El~~ie~~l~  220 (220)
T cd00527         169 ELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG  220 (220)
T ss_pred             HHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999996

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=3.4e-59  Score=408.09  Aligned_cols=202  Identities=42%  Similarity=0.643  Sum_probs=198.2

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      .||+|+++||+|||         ++.|++.|+  +++++++|+||+++|+|++||+||+|+|+.++++|+++|++.|  +
T Consensus        12 ~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l~e~L--~   87 (222)
T PRK04046         12 NIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEAL--D   87 (222)
T ss_pred             ceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHHHHhc--C
Confidence            58999999999999         899999999  9999999999999999999999999999999999999999997  6


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|.+++.+++++||++++||++||+||+++++..+.|+|+|||||.+.+|++.++||+++++||+|++|||+++++|++
T Consensus        88 v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ivaNd~G~lv~p~~t~~ei~  167 (222)
T PRK04046         88 LNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELK  167 (222)
T ss_pred             ceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeEEEEeCCEEEECCCCCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  206 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~  206 (225)
                      +|+++||||+.+||+|+|.++||||++|||||++|||+||++|+++||++|++.+
T Consensus       168 ~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt~~El~~ie~~l~~~~  222 (222)
T PRK04046        168 FLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE  222 (222)
T ss_pred             HHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999999999999999753

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=6.7e-58  Score=398.45  Aligned_cols=198  Identities=56%  Similarity=0.866  Sum_probs=194.2

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      +||+|+++||+||+         .+.|+|+|+  +++++++|+||++||+|+++|++|++||+..++++++.|++.    
T Consensus         9 ~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~----   82 (215)
T TIGR00323         9 EIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDS----   82 (215)
T ss_pred             CEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhh----
Confidence            59999999999999         888999999  999999999999999999999999999999999999999986    


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|.+++++.+++||++++||++||+||.++++..+.|+|.|+++|++.+|++.+++|+++++||+||||||+++++|++
T Consensus        83 l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~  162 (215)
T TIGR00323        83 LKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQE  162 (215)
T ss_pred             cCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEEEECCCCCHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL  204 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v  204 (225)
                      .|+|+||||+.+||+|+|.++|||++||||||++|||+||++|+++||++||+
T Consensus       163 ~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~El~~ie~~l~~  215 (215)
T TIGR00323       163 ELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPELSIIEEALGL  215 (215)
T ss_pred             HHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999985

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=1.9e-55  Score=379.40  Aligned_cols=182  Identities=71%  Similarity=1.049  Sum_probs=179.6

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      +||+|+++||+|||         ++.|++.|+  +++++|+|++|+++|+|++||+||+|||+.++|+|+++|+++|+++
T Consensus        10 ~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~i~~~L~d~   87 (200)
T smart00654       10 NIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHLRNSLPDS   87 (200)
T ss_pred             ceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHHHHHhcCCC
Confidence            58999999999999         889999999  9999999999999999999999999999999999999999999999


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|.+++.+++++||+++|||++||+||+++++.++.|+|+||||++++||+|.++|||.+++||+|+||||+++++|++
T Consensus        88 v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi~G~~~VGs~~VannkG~lv~~~tt~~El~  167 (200)
T smart00654       88 VEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELK  167 (200)
T ss_pred             eeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEecCcccceEEEEEECCEEEECCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceE
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA  184 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~  184 (225)
                      +|+++|++|+..||+|+|+++||||++|||||+
T Consensus       168 ~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~  200 (200)
T smart00654      168 ELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA  200 (200)
T ss_pred             HHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence            999999999999999999999999999999996

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=6.4e-48  Score=332.57  Aligned_cols=173  Identities=20%  Similarity=0.227  Sum_probs=167.7

Q ss_pred             EEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCeeEEEec-cCCCceeeEEEeeCcEEEEecCCChhHHHH
Q 027273           30 KTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEI  108 (225)
Q Consensus        30 ~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~  108 (225)
                      +++|+||++||+|+++|+||+|||+.++++|+++|++.|+  ++|.++. .+++++||++++||++||+||.++++..+.
T Consensus         2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~   79 (200)
T smart00654        2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQH   79 (200)
T ss_pred             eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHH
Confidence            7899999999999999999999999999999999999985  7888876 999999999999999999999999999999


Q ss_pred             HhhhhC--ceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEE
Q 027273          109 IADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC  186 (225)
Q Consensus       109 I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lv  186 (225)
                      |++.|+  ++|.+.+.. .+.+|+++++||+||||||+++++|+|+|+|+||||+.+||+ +|.++|||+++|||||++|
T Consensus        80 i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv  157 (200)
T smart00654       80 LRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLV  157 (200)
T ss_pred             HHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEE
Confidence            999997  999888887 999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhhCCCC
Q 027273          187 GSDTTATELSVIESVFKLRE  206 (225)
Q Consensus       187 g~~TT~~El~~Ie~~l~v~~  206 (225)
                      ||+||++|+++||++|+++.
T Consensus       158 ~~~tt~~El~~ie~~l~v~~  177 (200)
T smart00654      158 HPDTSEEELKELSELLGVPL  177 (200)
T ss_pred             CCCCCHHHHHHHHHHhCCCc
Confidence            99999999999999999985

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=9.6e-45  Score=317.07  Aligned_cols=175  Identities=23%  Similarity=0.305  Sum_probs=169.4

Q ss_pred             EEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCeeE-EEeccCCCceeeEEEeeCcEEEEecCCChhHH
Q 027273           28 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVV-QRIEERLSALGNCIACNDHVALAHTDLDRETE  106 (225)
Q Consensus        28 vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v-~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~  106 (225)
                      +++++|+||+.||+++++|++++|+|+.++++|+++||+.|  ++++ +..-.+++++|+|+++||+++++||.++++..
T Consensus         2 i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L--~v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~   79 (222)
T PRK04046          2 IRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETL--GVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEEL   79 (222)
T ss_pred             cEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhc--CceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHH
Confidence            68999999999999999999999999999999999999998  4666 45568999999999999999999999999999


Q ss_pred             HHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEE
Q 027273          107 EIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC  186 (225)
Q Consensus       107 ~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lv  186 (225)
                      +.|+|.|||+|+++++ +++++|+++++||+|+|+||+++++|++.|+|+||||+.++|+ +|.++|||+++|||||++|
T Consensus        80 ~~l~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv  157 (222)
T PRK04046         80 ELLKEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLV  157 (222)
T ss_pred             HHHHHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEE
Confidence            9999999999999999 9999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhhCCCC
Q 027273          187 GSDTTATELSVIESVFKLRE  206 (225)
Q Consensus       187 g~~TT~~El~~Ie~~l~v~~  206 (225)
                      ||+||++|+++|+++|+++.
T Consensus       158 ~p~~t~~ei~~i~~~l~v~~  177 (222)
T PRK04046        158 HPDATDEELKFLEDLFKVEV  177 (222)
T ss_pred             CCCCCHHHHHHHHHHhCCce
Confidence            99999999999999999985

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=3.4e-39  Score=281.93  Aligned_cols=155  Identities=17%  Similarity=0.226  Sum_probs=147.7

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      +||+|+++|++|+|         .+.|++.|+.+++++++++.+| ++|.|++||+||+|||+.++|+|+++|++.|+. 
T Consensus        55 ~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v-  132 (220)
T cd00527          55 LVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEAEEIIEDVLGV-  132 (220)
T ss_pred             ceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCC-
Confidence            58999999999999         7889999998999999999999 999999999999999999999999999999864 


Q ss_pred             eeEEEec-cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEee-cCceeeeeEEEEcCCeEEeCCCCCHHH
Q 027273           72 VVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGLVHPHTSIED  149 (225)
Q Consensus        72 v~v~~l~-~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s~ee  149 (225)
                       +|.+.+ .+.+++||+++|||++||+||+++++..+.|+|+||||+.++|+ +|+++|||.+++||+|+||||+++++|
T Consensus       133 -~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~E  211 (220)
T cd00527         133 -EVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPE  211 (220)
T ss_pred             -cEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHH
Confidence             555555 56999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHhhhcC
Q 027273          150 LDELSTLLQ  158 (225)
Q Consensus       150 l~~l~d~L~  158 (225)
                      +++|+++||
T Consensus       212 l~~ie~~l~  220 (220)
T cd00527         212 LSRIEDALG  220 (220)
T ss_pred             HHHHHHHhC
Confidence            999999986

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=1.4e-38  Score=277.22  Aligned_cols=151  Identities=18%  Similarity=0.246  Sum_probs=144.9

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      .||+|+++||+||+         .+.|+|.|+  |++++|+|   +++|+|++||+||+|+|+.++|+|+++|++.|+  
T Consensus        53 ~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~--  125 (215)
T TIGR00323        53 LVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDTEELISDVLG--  125 (215)
T ss_pred             ceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcC--
Confidence            58999999999999         788989999  99999999   999999999999999999999999999999985  


Q ss_pred             eeEEEec-cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEee-cCceeeeeEEEEcCCeEEeCCCCCHHH
Q 027273           72 VVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGLVHPHTSIED  149 (225)
Q Consensus        72 v~v~~l~-~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s~ee  149 (225)
                      ++|.+++ .+.+++|+++++||++|||||+++++..+.|+|+||||+.++|| +|.++|||.+++||+|++|||+++++|
T Consensus       126 v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~E  205 (215)
T TIGR00323       126 VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPE  205 (215)
T ss_pred             CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHH
Confidence            5677777 89999999999999999999999999999999999999999999 599999999999999999999999999


Q ss_pred             HHHHhhhcC
Q 027273          150 LDELSTLLQ  158 (225)
Q Consensus       150 l~~l~d~L~  158 (225)
                      +++|+++||
T Consensus       206 l~~ie~~l~  214 (215)
T TIGR00323       206 LSIIEEALG  214 (215)
T ss_pred             HHHHHHHhC
Confidence            999999997

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=2e-34  Score=248.49  Aligned_cols=127  Identities=28%  Similarity=0.444  Sum_probs=111.0

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEc-----------------------
Q 027273           79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS-----------------------  135 (225)
Q Consensus        79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~N-----------------------  135 (225)
                      .+++++|+|+++||+|||+||+.++++.+.|++.|+||+++++|+|++++|+|+++|                       
T Consensus         6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~   85 (199)
T PF01912_consen    6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP   85 (199)
T ss_dssp             TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred             eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence            589999999999999999999999999999999999999999999999999999997                       


Q ss_pred             ---------------------CCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHH
Q 027273          136 ---------------------NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE  194 (225)
Q Consensus       136 ---------------------n~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~E  194 (225)
                                           |+||+|||++++++.|.|+|+||||+.++|+ +|.++|||.+++||+|++|||++|++|
T Consensus        86 ~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~ti-a~~~~VGs~~v~tn~G~LvhP~~s~eE  164 (199)
T PF01912_consen   86 DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTI-AGIKTVGSAAVATNKGGLVHPDASEEE  164 (199)
T ss_dssp             TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--B-TTBS-CCCSEEE-SSEEEE-TT--HHH
T ss_pred             CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEe-cCcccceeeEEEeCcEEEECCCCCHHH
Confidence                                 5669999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 027273          195 LSVIESVFKLRE  206 (225)
Q Consensus       195 l~~Ie~~l~v~~  206 (225)
                      +++++++|+++.
T Consensus       165 l~~l~~~l~v~~  176 (199)
T PF01912_consen  165 LEELEELLGVPV  176 (199)
T ss_dssp             HHHHHHHHTSSE
T ss_pred             HHHHHHHhCCce
Confidence            999999999985

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5e-33  Score=240.85  Aligned_cols=127  Identities=30%  Similarity=0.461  Sum_probs=124.2

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEc-----------------------
Q 027273           79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS-----------------------  135 (225)
Q Consensus        79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~N-----------------------  135 (225)
                      ++++.||.|+.++|+||++||+.++++++.|+++|+|||++++|+|+++||+++++|                       
T Consensus         9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~   88 (222)
T COG1976           9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG   88 (222)
T ss_pred             cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence            789999999999999999999999999999999999999999999999999999997                       


Q ss_pred             --------------------CCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHH
Q 027273          136 --------------------NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL  195 (225)
Q Consensus       136 --------------------n~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El  195 (225)
                                          |+|||+||+++++..|.|+|+|||++.+||+ +|.+.|||..++||+|+||||+||++|+
T Consensus        89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El  167 (222)
T COG1976          89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL  167 (222)
T ss_pred             ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence                                6669999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHhhCCCC
Q 027273          196 SVIESVFKLRE  206 (225)
Q Consensus       196 ~~Ie~~l~v~~  206 (225)
                      ++++++||++.
T Consensus       168 e~Lse~f~V~v  178 (222)
T COG1976         168 EELSELFGVPV  178 (222)
T ss_pred             HHHHHHhCeeE
Confidence            99999999986

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=99.97  E-value=3.1e-31  Score=235.04  Aligned_cols=127  Identities=17%  Similarity=0.286  Sum_probs=124.1

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEcCCe------------------
Q 027273           79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------  138 (225)
Q Consensus        79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G------------------  138 (225)
                      ++++.+|+|+++||+|||+||+.++++.+.+++.|+  +|+++++|+|++++|+++++|++|                  
T Consensus         8 ~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~   87 (247)
T PTZ00136          8 ENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNS   87 (247)
T ss_pred             cCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHHHHHHHHh
Confidence            688999999999999999999999999999999999  999999999999999999998666                  


Q ss_pred             ---------------------------EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273          139 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT  191 (225)
Q Consensus       139 ---------------------------~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT  191 (225)
                                                 |||||+++++..+.|+|+|+||+.++|| +|+++|||.+++||+|++|||+++
T Consensus        88 l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s  166 (247)
T PTZ00136         88 LPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTI-AGNVLVGTYCVFTNQGGLVHPKTS  166 (247)
T ss_pred             CcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEe-cCCceEEEEEEEeCcEEEECCCCC
Confidence                                       9999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC
Q 027273          192 ATELSVIESVFKLRE  206 (225)
Q Consensus       192 ~~El~~Ie~~l~v~~  206 (225)
                      .+|+++|+++||++.
T Consensus       167 ~ee~~~i~d~L~V~v  181 (247)
T PTZ00136        167 VQEMDELSSLLQVPL  181 (247)
T ss_pred             HHHHHHHHHHhCCcE
Confidence            999999999999985

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=3.2e-22  Score=172.10  Aligned_cols=127  Identities=17%  Similarity=0.306  Sum_probs=124.1

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEcCCe------------------
Q 027273           79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------  138 (225)
Q Consensus        79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G------------------  138 (225)
                      ++++.+|.|...++.||||.-.-++.+.+.++..|+  +|+++++|+|++++|+++++|.+|                  
T Consensus         8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS   87 (245)
T KOG3185|consen    8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS   87 (245)
T ss_pred             cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence            788999999999999999999999999999999999  999999999999999999999777                  


Q ss_pred             ---------------------------EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273          139 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT  191 (225)
Q Consensus       139 ---------------------------~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT  191 (225)
                                                 +||||++++|..+.|+|+|+|+|++.|+ ++.++|||++..+|+|++|||.|+
T Consensus        88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqti-a~n~LvGsyc~lsnqG~lVhp~Ts  166 (245)
T KOG3185|consen   88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTI-AQNSLVGSYCALSNQGGLVHPRTS  166 (245)
T ss_pred             CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecc-cCCceeeeeEEEcCCCceecCCCC
Confidence                                       9999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC
Q 027273          192 ATELSVIESVFKLRE  206 (225)
Q Consensus       192 ~~El~~Ie~~l~v~~  206 (225)
                      -++.++++.+|.+|.
T Consensus       167 ~e~q~Els~LlqVpl  181 (245)
T KOG3185|consen  167 VEDQDELSSLLQVPL  181 (245)
T ss_pred             HHHHHHHHHHhccce
Confidence            999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3j2i_B	245	Structure Of Late Pre-60s Ribosomal Subunits With N		5e-88
1g62_A	224	Crystal Structure Of S.Cerevisiae Eif6 Length = 224		4e-82
4a18_J	248	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-80
1g61_A	228	Crystal Structure Of M.Jannaschii Eif6 Length = 228		1e-23
4adx_I	222	The Cryo-Em Structure Of The Archaeal 50s Ribosomal		1e-22

>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Export Factor Arx1 Bound At The Peptide Exit Tunnel Length = 245

Iteration: 1
 Score =  320 bits (819), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 153/232 (65%), Positives = 186/232 (80%), Gaps = 9/232 (3%)
Query: 2   ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 52
           I ++  L N YC+         +S FEAEL D IP+V T+I G RIIGR+  GN+ GLL+
Sbjct: 13  IGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLV 72
Query: 53  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
           P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DV
Sbjct: 73  PTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDV 132
Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 172
           LGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V
Sbjct: 133 LGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSV 192
Query: 173 IGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 224
           +GAG+ VND+ A  G DTTA ELSVIES+F+L++AQP +I   +R +LI++Y
Sbjct: 193 VGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIETY 244

>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6 Length = 224

Iteration: 1
 Score =  300 bits (768), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 145/212 (68%), Positives = 171/212 (80%), Gaps = 9/212 (4%)
Query: 2   ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 52
           I ++  L N YC+         +S FEAEL D IP+V T+I G RIIGR+  GN+ GLL+
Sbjct: 13  IGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLV 72
Query: 53  PHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
           P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DV
Sbjct: 73  PTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDV 132
Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 172
           LGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V
Sbjct: 133 LGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSV 192
Query: 173 IGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204
           +GAG+ VND+ A  G DTTA ELSVIES+F+L
Sbjct: 193 VGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 248

Iteration: 1
 Score =  292 bits (748), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 170/208 (81%)
Query: 14  IHSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVV 73
            +S FE+EL   IPV+ TSIGG RI+GR+  GNKNGLL+P+T  D EL+++RNSLPD V 
Sbjct: 37  FYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVR 96
Query: 74  VQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCS 133
           V+RIEE+LSALGNC+  ND+VAL H DLDRE+EEIIAD LGVEVFR TIA N+LVG+YC 
Sbjct: 97  VRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCV 156
Query: 134 FSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTAT 193
            +NRGGLVHP  S+E+LDEL+ LLQ+PL AGT+NRGS+VIGAGL VNDW AFCG DTT+T
Sbjct: 157 INNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTST 216
Query: 194 ELSVIESVFKLREAQPNAIVDEMRKSLI 221
           E+SV+E++FKL E +   + +EMRK  +
Sbjct: 217 EISVVENIFKLNEMKDENMDNEMRKDFV 244

>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 Length = 228

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 5/180 (2%)
Query: 29  VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALG 85
           ++T+IGG+ ++G L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALG
Sbjct: 49  LQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALG 108
Query: 86  NCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHT 145
           N I  ND  AL   +L ++ ++ I D L VEV   TIA    VGS    +N+G L HP  
Sbjct: 109 NLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLV 167
Query: 146 SIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204
             ++L+ L +L +V  +  GT N+G+  +GA +  N   A  G DTT  EL +IE    L
Sbjct: 168 EDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227

>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6 Length = 222

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 3/182 (1%)
Query: 26  IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALG 85
           + V+K SI G+ + G L VGN NG ++ +   D+E+  L  +  + V   RI ER +A+G
Sbjct: 44  VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVG 100
Query: 86  NCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHT 145
           N +  ND+ A+A   L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  
Sbjct: 101 NLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQA 160
Query: 146 SIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLR 205
           S E++  +   L V    GTVN G  +IGA    N      G +TT  EL+ IE      
Sbjct: 161 SSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFL 220
Query: 206 EA 207
           E 
Sbjct: 221 EG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	1e-97
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	8e-91
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	2e-10
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	7e-85
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	6e-16
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	2e-82
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	5e-11
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	1e-10

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score =  283 bits (725), Expect = 1e-97
 Identities = 140/228 (61%), Positives = 176/228 (77%), Gaps = 9/228 (3%)

Query: 5   YKILLNEYCIH---------STFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHT 55
           +  L + YC+          S FE+EL   IPV+ TSIGG RI+GR+  GNKNGLL+P+T
Sbjct: 19  FCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNT 78

Query: 56  TTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 115
             D EL+++RNSLPD V V+RIEE+LSALGNC+  ND+VAL H DLDRE+EEIIAD LGV
Sbjct: 79  CNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGV 138

Query: 116 EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 175
           EVFR TIA N+LVG+YC  +NRGGLVHP  S+E+LDEL+ LLQ+PL AGT+NRGS+VIGA
Sbjct: 139 EVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGA 198

Query: 176 GLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 223
           GL VNDW AFCG DTT+TE+SV+E++FKL E +   + +EMRK  + +
Sbjct: 199 GLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDFVMN 246

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score =  265 bits (679), Expect = 8e-91
 Identities = 144/209 (68%), Positives = 168/209 (80%), Gaps = 9/209 (4%)

Query: 5   YKILLNEYCIH---------STFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHT 55
           +  L N YC+          S FEAEL D IP+V T+I G RIIGR+  GN+ GLL+P  
Sbjct: 16  FSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQ 75

Query: 56  TTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 115
           TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGV
Sbjct: 76  TTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGV 135

Query: 116 EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 175
           EVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GA
Sbjct: 136 EVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGA 195

Query: 176 GLTVNDWTAFCGSDTTATELSVIESVFKL 204
           G+ VND+ A  G DTTA ELSVIES+F+L
Sbjct: 196 GMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 29/180 (16%), Positives = 69/180 (38%), Gaps = 5/180 (2%)

Query: 28  VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQV-VVQRIEERLSALGN 86
             +T    +  IG          L+    ++         L D + +V         +G 
Sbjct: 2   ATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGR 61

Query: 87  CIACNDH-VALAHTDLDRETEEIIADV-LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPH 144
             A N   + +     D+E + +   +   V++ R     + L G+    ++   LVHP 
Sbjct: 62  MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSAL-GNVICCNDYVALVHPD 120

Query: 145 TSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204
              E  + +S +L V +   T++ G+ ++G+  ++++        T+  +   + S+ ++
Sbjct: 121 IDRETEELISDVLGVEVFRQTIS-GNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQV 179

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score =  250 bits (639), Expect = 7e-85
 Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 5   YKILLNEYCIH---------STFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHT 55
           Y  + +   +                L   + V+K SI G+ + G L VGN NG ++ + 
Sbjct: 16  YISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQ 73

Query: 56  TTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 115
             D+E+  L  +  +     RI ER +A+GN +  ND+ A+A   L  +  ++I DVL V
Sbjct: 74  AMDREIDALAAAGVE---AVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEV 130

Query: 116 EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 175
           +V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +IGA
Sbjct: 131 DVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGA 190

Query: 176 GLTVNDWTAFCGSDTTATELSVIESVFKLREA 207
               N      G +TT  EL+ IE      E 
Sbjct: 191 CSVANSNGVLVGEETTGPELARIEEALGFLEG 222

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score = 72.7 bits (178), Expect = 6e-16
 Identities = 33/178 (18%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 28  VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNC 87
           + + ++ GN  +G       +  L+P  T ++    LR +L  +V+   I    S  G  
Sbjct: 2   IRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGS-SLNGAL 60

Query: 88  IACNDH-VALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTS 146
              N +   +++  +DRE + + A  +      +       VG+    ++ G +  P  S
Sbjct: 61  AVGNSNGFVVSNQAMDREIDALAAAGVEAVRIPERFTA---VGNLVLANDNGAVASPLLS 117

Query: 147 IEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204
            + L  +  +L+V +   T+  G  ++G+     +  A      ++ E+ +IE    +
Sbjct: 118 DDALQVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGV 174

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score =  244 bits (623), Expect = 2e-82
 Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 16/213 (7%)

Query: 5   YKILLNEYCIH---------STFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHT 55
             +   E  +          +     L      ++T+IGG+ ++G L V NK GLLLP  
Sbjct: 18  LALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKI 75

Query: 56  TTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 112
             D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL   +L  + ++ I D 
Sbjct: 76  VEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELK-DFKKDIEDS 134

Query: 113 LGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSE 171
           L VEV   TIA    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+ 
Sbjct: 135 LNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTT 194

Query: 172 VIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204
            +GA +  N   A  G DTT  EL +IE    L
Sbjct: 195 SVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score = 59.2 bits (143), Expect = 5e-11
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 82  SALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 141
             +G      + + L    LD++    +++VL  +  +  I G+ LVGS    +  G L+
Sbjct: 13  PTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLL 72

Query: 142 HPHTSIEDLDELSTLLQVPLVAGTVNRGSE---VIGAGLTVNDWTAFCGSDTTATELSVI 198
                 E+LD +   L+   +   V         +G  +  ND  A    +    +   I
Sbjct: 73  PKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFK-KDI 131

Query: 199 ESVFK 203
           E    
Sbjct: 132 EDSLN 136

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 17/187 (9%)

Query: 28  VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNC 87
           +++    G   IG L +  +   LLP      ++  +   L  + +   I    S +G+ 
Sbjct: 4   IIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGG-SSLVGSL 62

Query: 88  IACNDH-VALAHTDLDRETEEI------IADVLGVEVF--RQTIAGNILVGSYCSFSNRG 138
              N + + L     D E + I          L VE+   + T  GN+++      +++G
Sbjct: 63  SVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILT-----NDKG 117

Query: 139 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVI 198
            L+ P    +   ++   L V +  GT+      +G+   V +            EL  +
Sbjct: 118 ALISPELK-DFKKDIEDSLNVEVEIGTI-AELPTVGSNAVVTNKGCLTHPLVEDDELEFL 175

Query: 199 ESVFKLR 205
           +S+FK+ 
Sbjct: 176 KSLFKVE 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	99.97
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	99.97
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	99.97

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=2e-78  Score=534.62  Aligned_cols=224  Identities=63%  Similarity=1.041  Sum_probs=203.7

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      .||||+++||+|||         ++.|+++|++|+|+|+|+|+||++||+|++||+||||||++++|+|+++||++||++
T Consensus        15 ~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~   94 (248)
T 4a18_J           15 DIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNSLPDN   94 (248)
T ss_dssp             CGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHHSCTT
T ss_pred             cEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhhCCCC
Confidence            48999999999999         899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|+|+++|+||+|||++|||++|||||++++++.+.|+|+|||||++++|||+++|||++++||+|+||||.++++|++
T Consensus        95 v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~LVhp~~s~eEl~  174 (248)
T 4a18_J           95 VRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELD  174 (248)
T ss_dssp             SEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEEECTTCCHHHHH
T ss_pred             ceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEEECCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhhc
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY  224 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~  224 (225)
                      +|+++|+||+..||+|+|+++||||++|||||++|||+||++|+++||++||+++.+++++..+||++|||+|
T Consensus       175 ~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~  247 (248)
T 4a18_J          175 ELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDFVMNL  247 (248)
T ss_dssp             HHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHHTTCC-------------------
T ss_pred             HHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999778889999999999987

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=2.1e-75  Score=509.22  Aligned_cols=204  Identities=71%  Similarity=1.107  Sum_probs=202.2

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      .||||+++||+|||         ++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|+++||++||++
T Consensus        12 ~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   91 (224)
T 1g62_A           12 EIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDS   91 (224)
T ss_dssp             CHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHSCTT
T ss_pred             cEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhhCCCC
Confidence            48999999999999         899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|+|+++|++|+|||++|||++|||||++++++++.|+|+|||||++++|||+++|||++++||+|+||||+++++|++
T Consensus        92 v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~LVhP~~s~ee~~  171 (224)
T 1g62_A           92 VKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQE  171 (224)
T ss_dssp             SEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHH
T ss_pred             ceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEEECCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL  204 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v  204 (225)
                      +|+|+||||+.+||+|+|.++||||++|||||++|||+||++|+++||++|++
T Consensus       172 ~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~f~v  224 (224)
T 1g62_A          172 ELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL  224 (224)
T ss_dssp             HHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred             HHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999986

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=2e-65  Score=446.23  Aligned_cols=201  Identities=34%  Similarity=0.509  Sum_probs=197.5

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      .||||+++||+|||         ++.|+++|+  +|+++|+|+||++||+|++||+||+|||+.++|+|+++||+.   +
T Consensus        12 ~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~~---~   86 (222)
T 4adx_I           12 NLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAA---G   86 (222)
T ss_pred             cEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHhc---C
Confidence            58999999999999         999999999  999999999999999999999999999999999999999983   7


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|.++++|++++||+++|||++|||||++++++++.|+|+|||||++.+|++.+++|+++++||+|+||||+++++|++
T Consensus        87 v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~  166 (222)
T 4adx_I           87 VEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIG  166 (222)
T ss_pred             CeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE  206 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~  206 (225)
                      +|+++|+||+.+||+|+|+++||||++|||||++|||+||++||++||++||+.+
T Consensus       167 ~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~f~~~~  221 (222)
T 4adx_I          167 IIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE  221 (222)
T ss_pred             HHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999999999999999865

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=9.3e-65  Score=443.50  Aligned_cols=201  Identities=36%  Similarity=0.507  Sum_probs=198.4

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhC---
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL---   68 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l---   68 (225)
                      .||||+++||+|||         ++.|+++|+  +|+++|+|+||++||+|++||+||+|||+.++|+|+++||++|   
T Consensus        14 ~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~   91 (228)
T 1g61_A           14 TIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKEN   91 (228)
T ss_dssp             CHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHT
T ss_pred             cEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhcc
Confidence            48999999999999         899999999  9999999999999999999999999999999999999999998   


Q ss_pred             CCCeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHH
Q 027273           69 PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIE  148 (225)
Q Consensus        69 ~~~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~e  148 (225)
                      |++++|+++++|++++||+++|||++|||||++ ++..+.|+|+|+|+|++.+|++..++|++++++|+|+||||+++++
T Consensus        92 ~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~G~LVhP~~s~e  170 (228)
T 1g61_A           92 NLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDD  170 (228)
T ss_dssp             TCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSSEEEECTTCCHH
T ss_pred             CCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceEEEEeCCccceeeEEEEecceEEECCCCCHH
Confidence            889999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCce-eeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273          149 DLDELSTLLQVP-LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL  204 (225)
Q Consensus       149 el~~l~d~L~V~-v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v  204 (225)
                      |+++|+|+|||| +.+||+|+|+++||||++|||||++|||+||++|+++||++|++
T Consensus       171 e~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v  227 (228)
T 1g61_A          171 ELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL  227 (228)
T ss_dssp             HHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence            999999999999 99999999999999999999999999999999999999999997

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.8e-33  Score=245.03  Aligned_cols=174  Identities=20%  Similarity=0.280  Sum_probs=166.0

Q ss_pred             EEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCeeEEEec-cCCCceeeEEEeeCcEEEEecCCChhHH
Q 027273           28 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETE  106 (225)
Q Consensus        28 vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~Nd~~alV~p~l~~~~~  106 (225)
                      +.++.+.||+-||.|+.-++.=.|+|....++-.+.+++.|.  +++.+.. .+++.+|.|+++||+++|+||..+++..
T Consensus         2 ~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~   79 (222)
T 4adx_I            2 IRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREI   79 (222)
T ss_pred             cEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHHH
Confidence            468999999999999999999999999999999999999975  6665554 6999999999999999999999999999


Q ss_pred             HHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEE
Q 027273          107 EIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC  186 (225)
Q Consensus       107 ~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lv  186 (225)
                      +.|++ ++|+|.+++ ++++.+|.++++||+|+||||+++++|++.|+|+|+|++.++|+ ++.+.||+.++|||+|++|
T Consensus        80 ~~l~~-~~v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i-~~~~avGn~~v~nn~G~lV  156 (222)
T 4adx_I           80 DALAA-AGVEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALL  156 (222)
T ss_pred             HHHHh-cCCeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEec-CCccceEEEEEEeCceEEE
Confidence            99999 599999999 99999999999999999999999999999999999999999998 8899999999999999999


Q ss_pred             cCCCCHHHHHHHHHhhCCCC
Q 027273          187 GSDTTATELSVIESVFKLRE  206 (225)
Q Consensus       187 g~~TT~~El~~Ie~~l~v~~  206 (225)
                      ||++|++|+++|+++|+++.
T Consensus       157 hP~~s~ee~~~i~~~L~V~v  176 (222)
T 4adx_I          157 NPQASSEEIGIIEDTLGVEA  176 (222)
T ss_pred             CCCCCHHHHHHHHHHhCCCE
Confidence            99999999999999999986

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=99.97  E-value=1.1e-31  Score=233.94  Aligned_cols=127  Identities=20%  Similarity=0.315  Sum_probs=124.2

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEcCCe------------------
Q 027273           79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------  138 (225)
Q Consensus        79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G------------------  138 (225)
                      ++++.+|+|+.+||+|||+||+.++++.+.+++.|+  +|+++++|+|++++|+++++|++|                  
T Consensus         8 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~   87 (224)
T 1g62_A            8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS   87 (224)
T ss_dssp             TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhh
Confidence            789999999999999999999999999999999999  999999999999999999998666                  


Q ss_pred             ---------------------------EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273          139 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT  191 (225)
Q Consensus       139 ---------------------------~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT  191 (225)
                                                 |||||+++++..+.|+|+|+||+.++|+ +|+++|||.+++||+|++|||+++
T Consensus        88 l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tI-ag~~lVGs~~v~nn~G~LVhP~~s  166 (224)
T 1g62_A           88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTI-SGNILVGSYCSLSNQGGLVHPQTS  166 (224)
T ss_dssp             SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCB-TTBSCGGGSEEECSSCEEECTTCC
T ss_pred             CCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEe-cCcceEEEEEEEeCcEEEECCCCC
Confidence                                       9999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC
Q 027273          192 ATELSVIESVFKLRE  206 (225)
Q Consensus       192 ~~El~~Ie~~l~v~~  206 (225)
                      .+|++.|+++|+++.
T Consensus       167 ~ee~~~i~d~L~V~v  181 (224)
T 1g62_A          167 VQDQEELSSLLQVPL  181 (224)
T ss_dssp             HHHHHHHHHHHTSCE
T ss_pred             HHHHHHHHHHhCCcE
Confidence            999999999999986

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=99.97  E-value=4.7e-32  Score=236.91  Aligned_cols=154  Identities=19%  Similarity=0.244  Sum_probs=140.7

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhc---CC--ccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHh
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELA---DV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRN   66 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~---~~--v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~   66 (225)
                      +||+|++.|++++|         ++.|++.|+   +.  |+++++   +++.+|.++++|+||+|||+-. ++..+.|++
T Consensus        58 ~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~---~~~alGnli~~Nd~galV~~el-~~~~~~i~d  133 (228)
T 1g61_A           58 LVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKS---KNTALGNLILTNDKGALISPEL-KDFKKDIED  133 (228)
T ss_dssp             CHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECC---SSCCHHHHEEECSSEEEECGGG-GGGHHHHHH
T ss_pred             cEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcC---CCcceEEEEEecCccEEeCHHH-HHHHHHHHH
Confidence            58999999999999         889999884   22  566775   9999999999999999999966 555567777


Q ss_pred             hCCCCeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCce-EEEEeec-CceeeeeEEEEcCCeEEeCCC
Q 027273           67 SLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIA-GNILVGSYCSFSNRGGLVHPH  144 (225)
Q Consensus        67 ~l~~~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVe-V~~~tIa-g~~lVGs~~v~Nn~G~LVhP~  144 (225)
                      .|+.++.++++.++.++.||.+++| ++|||||+++++..+.|+|.|+|| +.++|++ |+++|||.+++||+|+++||+
T Consensus       134 ~L~veV~~~~i~~~~tvg~n~v~tN-~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~  212 (228)
T 1g61_A          134 SLNVEVEIGTIAELPTVGSNAVVTN-KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGD  212 (228)
T ss_dssp             HHCSEEEECCBTTBSCTTTSEEECS-SEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETT
T ss_pred             hcCCceEEEEeCCccceeeEEEEec-ceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCC
Confidence            7776777888999999999999999 999999999999999999999999 9999998 999999999999999999999


Q ss_pred             CCHHHHHHHhhhcCc
Q 027273          145 TSIEDLDELSTLLQV  159 (225)
Q Consensus       145 ~s~eel~~l~d~L~V  159 (225)
                      ++++|+++|+++|+|
T Consensus       213 TT~~El~~Ie~~f~v  227 (228)
T 1g61_A          213 TTGPELLIIEDALGL  227 (228)
T ss_dssp             CCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHhcc
Confidence            999999999999987

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=99.97  E-value=2.1e-31  Score=235.01  Aligned_cols=127  Identities=17%  Similarity=0.267  Sum_probs=124.0

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEcCCe------------------
Q 027273           79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------  138 (225)
Q Consensus        79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G------------------  138 (225)
                      ++++.+|+|+.+||+|||+||+.++++.+.|++.|+  +|+++++|+|+++||+++++|++|                  
T Consensus        11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~   90 (248)
T 4a18_J           11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS   90 (248)
T ss_dssp             TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence            789999999999999999999999999999999999  999999999999999999998555                  


Q ss_pred             ---------------------------EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273          139 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT  191 (225)
Q Consensus       139 ---------------------------~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT  191 (225)
                                                 +||||+++++..+.|+|+||||+.++|| +|+++|||.+++||+|++|||.++
T Consensus        91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tI-ags~lVGs~~v~Nn~G~LVhp~~s  169 (248)
T 4a18_J           91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTI-ANNVLVGTYCVINNRGGLVHPLAS  169 (248)
T ss_dssp             SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCB-TTBSCHHHHEEECSSCEEECTTCC
T ss_pred             CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEc-CCcceeEEEEEEeCCeEEECCCCC
Confidence                                       9999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC
Q 027273          192 ATELSVIESVFKLRE  206 (225)
Q Consensus       192 ~~El~~Ie~~l~v~~  206 (225)
                      ++|+++|+++|+++.
T Consensus       170 ~eEl~~L~~~l~V~v  184 (248)
T 4a18_J          170 VEELDELANLLQIPL  184 (248)
T ss_dssp             HHHHHHHHHHHTSCE
T ss_pred             HHHHHHHHHHhCCce
Confidence            999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	1e-99
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	4e-91
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	2e-07

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  287 bits (735), Expect = 1e-99
 Identities = 144/209 (68%), Positives = 168/209 (80%), Gaps = 9/209 (4%)

Query: 5   YKILLNEYCIH---------STFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHT 55
           +  L N YC+          S FEAEL D IP+V T+I G RIIGR+  GN+ GLL+P  
Sbjct: 16  FSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQ 75

Query: 56  TTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 115
           TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGV
Sbjct: 76  TTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGV 135

Query: 116 EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGA 175
           EVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GA
Sbjct: 136 EVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGA 195

Query: 176 GLTVNDWTAFCGSDTTATELSVIESVFKL 204
           G+ VND+ A  G DTTA ELSVIES+F+L
Sbjct: 196 GMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  265 bits (678), Expect = 4e-91
 Identities = 72/211 (34%), Positives = 110/211 (52%), Gaps = 12/211 (5%)

Query: 5   YKILLNEYCIHS-----TFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTT 57
             +   E  +           E+++V     ++T+IGG+ ++G L V NK GLLLP    
Sbjct: 16  LALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVE 75

Query: 58  DQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 114
           D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL   +L ++ ++ I D L 
Sbjct: 76  DEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN 134

Query: 115 VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVI 173
           VEV   TIA    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  +
Sbjct: 135 VEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSV 194

Query: 174 GAGLTVNDWTAFCGSDTTATELSVIESVFKL 204
           GA +  N   A  G DTT  EL +IE    L
Sbjct: 195 GACIIANSKGAVVGGDTTGPELLIIEDALGL 225

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 84  LGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHP 143
           +G      + + L    LD++    +++VL  +  +  I G+ LVGS    +  G L+  
Sbjct: 13  IGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPK 72

Query: 144 HTSIEDLDELSTLLQVPLVAGTVNRGSEV---IGAGLTVNDWTAFCGSDTTATELSVIES 200
               E+LD +   L+   +   V         +G  +  ND  A    +        IE 
Sbjct: 73  IVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPE-LKDFKKDIED 131

Query: 201 VFKL 204
              +
Sbjct: 132 SLNV 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	100.0
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	99.98
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	99.97

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-74  Score=500.11  Aligned_cols=204  Identities=71%  Similarity=1.107  Sum_probs=201.9

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ   71 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~   71 (225)
                      +||||+++||+|||         ++.|+++|++++|+++|+|+||++||+|++||+||||||++++|+|+++||+++|++
T Consensus        12 ~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~El~~L~~~l~d~   91 (224)
T d1g62a_          12 EIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDS   91 (224)
T ss_dssp             CHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHSCTT
T ss_pred             ceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHHHHHHHhhCCCC
Confidence            58999999999999         899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273           72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD  151 (225)
Q Consensus        72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~  151 (225)
                      ++|+++++|+||+||+|+|||++|+|||++++++++.|+|+|||||+|++|||.++|||++++||+|+|+||+++++|++
T Consensus        92 v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~tiag~~~VGs~~v~tn~G~LvhP~~t~~E~~  171 (224)
T d1g62a_          92 VKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQE  171 (224)
T ss_dssp             SEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHH
T ss_pred             cEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEEecCccceeeEEEEcCCceeecCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273          152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL  204 (225)
Q Consensus       152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v  204 (225)
                      +|+++|+||+..||||+|+++||||++|||||++||.+||++||.|||++|++
T Consensus       172 ~l~~~l~V~~~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~~~~l  224 (224)
T d1g62a_         172 ELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL  224 (224)
T ss_dssp             HHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCcccceeeCCCCCceeEEEEcCceEEEcCCCCcHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999985

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.9e-72  Score=488.28  Aligned_cols=201  Identities=36%  Similarity=0.518  Sum_probs=196.2

Q ss_pred             CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCC-
Q 027273            1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD-   70 (225)
Q Consensus         1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~-   70 (225)
                      +||||+++||+|||         ++.|+++|+  +|+++|+|+||++||+|++||+||||||++++|+|+++||++||+ 
T Consensus        12 ~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~--v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~   89 (225)
T d1g61a_          12 TIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKEN   89 (225)
T ss_dssp             CHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHHHHHHHhhcccc
Confidence            58999999999999         899999999  999999999999999999999999999999999999999999975 


Q ss_pred             --CeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHH
Q 027273           71 --QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIE  148 (225)
Q Consensus        71 --~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~e  148 (225)
                        +++|+++++|+||+||+|+|||++|+|||++ +++.+.|+|+|||||+|++|||.++|||++++||+|+|+||+++++
T Consensus        90 ~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l-~e~~e~I~dvL~Vev~r~~iag~~~VGs~~v~tn~G~LvhP~~s~~  168 (225)
T d1g61a_          90 NLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDD  168 (225)
T ss_dssp             TCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSSEEEECTTCCHH
T ss_pred             cCCceEEEeCCcccccccEEEEcCcceEecccc-chHHHHHHHhhCceEEEEEeCCcccceeEEEEeccceEECCCCCHH
Confidence              5999999999999999999999999999999 5789999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCce-eeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273          149 DLDELSTLLQVP-LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL  204 (225)
Q Consensus       149 el~~l~d~L~V~-v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v  204 (225)
                      |+++|+++|||| +..||||+|+++||||++|||||++||.+||++||.|||++||+
T Consensus       169 E~~~l~~~l~V~~v~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~a~~l  225 (225)
T d1g61a_         169 ELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL  225 (225)
T ss_dssp             HHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCcccccceeCCCCCceeEEEEcCceEEEcCCCchHHHHHHHHHhCC
Confidence            999999999999 57899999999999999999999999999999999999999985

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.4e-33  Score=239.92  Aligned_cols=127  Identities=18%  Similarity=0.277  Sum_probs=123.8

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEc---------------------
Q 027273           79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFS---------------------  135 (225)
Q Consensus        79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~N---------------------  135 (225)
                      ++++++|+|+.+||+||++||+.+++..+.+++.|+  +|+++++|+|++++|+++++|                     
T Consensus         8 ~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~El~~L~~~   87 (224)
T d1g62a_           8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS   87 (224)
T ss_dssp             TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHHHHHHHhh
Confidence            789999999999999999999999999999999998  999999999999999999997                     


Q ss_pred             ------------------------CCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273          136 ------------------------NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT  191 (225)
Q Consensus       136 ------------------------n~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT  191 (225)
                                              |+||+|||+++++..|.|+|+||||+.++|+ +|.++|||.+++||+|+|+||++|
T Consensus        88 l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~ti-ag~~~VGs~~v~tn~G~LvhP~~t  166 (224)
T d1g62a_          88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTI-SGNILVGSYCSLSNQGGLVHPQTS  166 (224)
T ss_dssp             SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCB-TTBSCGGGSEEECSSCEEECTTCC
T ss_pred             CCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEEe-cCccceeeEEEEcCCceeecCCCC
Confidence                                    5559999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCC
Q 027273          192 ATELSVIESVFKLRE  206 (225)
Q Consensus       192 ~~El~~Ie~~l~v~~  206 (225)
                      ++|+++|+++|+++.
T Consensus       167 ~~E~~~l~~~l~V~~  181 (224)
T d1g62a_         167 VQDQEELSSLLQVPL  181 (224)
T ss_dssp             HHHHHHHHHHHTSCE
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999999999999985

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=2e-32  Score=236.47  Aligned_cols=125  Identities=21%  Similarity=0.376  Sum_probs=120.8

Q ss_pred             cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEc-----------------------
Q 027273           79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS-----------------------  135 (225)
Q Consensus        79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~N-----------------------  135 (225)
                      ++++++|+|+.+||+||++||+++++..+.|++.|++|+++++|+|++++|+++++|                       
T Consensus         8 ~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~   87 (225)
T d1g61a_           8 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK   87 (225)
T ss_dssp             TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHHHHHHHhhcc
Confidence            789999999999999999999999999999999999999999999999999999997                       


Q ss_pred             -------------------------CCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCC
Q 027273          136 -------------------------NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT  190 (225)
Q Consensus       136 -------------------------n~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~T  190 (225)
                                               |+||+|||+++ ++.+.|+|+||||+.++|+ +|.+.|||.+++||+|+++||+|
T Consensus        88 ~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l~-e~~e~I~dvL~Vev~r~~i-ag~~~VGs~~v~tn~G~LvhP~~  165 (225)
T d1g61a_          88 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPELK-DFKKDIEDSLNVEVEIGTI-AELPTVGSNAVVTNKGCLTHPLV  165 (225)
T ss_dssp             HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGG-GGHHHHHHHHCSEEEECCB-TTBSCTTTSEEECSSEEEECTTC
T ss_pred             cccCCceEEEeCCcccccccEEEEcCcceEeccccc-hHHHHHHHhhCceEEEEEe-CCcccceeEEEEeccceEECCCC
Confidence                                     55599999995 6779999999999999999 99999999999999999999999


Q ss_pred             CHHHHHHHHHhhCCC
Q 027273          191 TATELSVIESVFKLR  205 (225)
Q Consensus       191 T~~El~~Ie~~l~v~  205 (225)
                      |++|+++|+++|+++
T Consensus       166 s~~E~~~l~~~l~V~  180 (225)
T d1g61a_         166 EDDELEFLKSLFKVE  180 (225)
T ss_dssp             CHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999999998