Citrus Sinensis ID: 027280

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHccccc
MEKDVDEVGKISRFIKSKIEELdrenltsrqkpgcgkgtgvdrsrtattLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTvtgkradeETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIkpwssnkga
mekdvdevgkisrfikskieeldrenltsrqkpgcgkgtgvdrsrtattlglkkkfkdkmgefQVLRenihqeyrevverrvytvtgkradeetidqLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKpwssnkga
MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQeyrevverrvytvtGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCiaiiilliivaiivvaviKPWSSNKGA
*******************************************************FKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIE******IFQKAI******QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNI***************************SRKWMCIAIIILLIIVAIIVVAVIKPW******
MEKDVDEVGKISRFIKSKI****************************TTLGLKKKFKDKMGEFQV**********************************************************LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIK*WS*****
********GKISRFIKSKIEELDR******************RSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQV***********************SRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
MEKDVDEVGKISRFIKSKIEELDRENLTS********GTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSS****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAExxxxxxxxxxxxxxxxxxxxxFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
Q9SRV7306 Putative syntaxin-131 OS= yes no 1.0 0.735 0.808 9e-99
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.995 0.736 0.862 2e-95
O64791303 Syntaxin-124 OS=Arabidops no no 0.96 0.712 0.513 1e-62
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.888 0.655 0.565 5e-61
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.888 0.671 0.56 9e-61
Q9ZSD4346 Syntaxin-121 OS=Arabidops no no 0.986 0.641 0.554 1e-59
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.986 0.651 0.540 4e-56
Q42374310 Syntaxin-related protein no no 0.813 0.590 0.478 3e-45
Q9ZPV9305 Syntaxin-112 OS=Arabidops no no 0.928 0.685 0.337 6e-31
P32851288 Syntaxin-1A OS=Rattus nor yes no 0.884 0.690 0.288 3e-18
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function desciption
 Score =  359 bits (921), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 182/225 (80%), Positives = 206/225 (91%)

Query: 1   MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKM 60
           ME+DVDEVG+ISRFIK KIEELDRENL +R KPGCGKGTGVDR+RTATT+ +KKKFKDK+
Sbjct: 82  MERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKI 141

Query: 61  GEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQI 120
            EFQ LR+NI QEYREVVERRV+TVTG+RADEE ID+LIETGDSEQIFQKAI+EQGRGQI
Sbjct: 142 SEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQI 201

Query: 121 MDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180
           MDTLAEIQERHDAVRDLE+KLL+LQQ+FLDMAVLVDAQG+MLDNIE+ VSSAVDHVQSGN
Sbjct: 202 MDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGN 261

Query: 181 TALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA 225
             L KA K QK+SRKWMCIAI+ILLII+ I V++V+KPW+   GA
Sbjct: 262 NQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLKPWTQKNGA 306
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function description
>sp|P32851|STX1A_RAT Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
224146010304 predicted protein [Populus trichocarpa] 1.0 0.740 0.893 1e-104
225439283307 PREDICTED: putative syntaxin-131 [Vitis 0.986 0.723 0.896 1e-102
255569518304 syntaxin, putative [Ricinus communis] gi 1.0 0.740 0.884 1e-102
15228637306 syntaxin 1B/2/3 [Arabidopsis thaliana] g 1.0 0.735 0.808 5e-97
297828858306 SYP131 [Arabidopsis lyrata subsp. lyrata 1.0 0.735 0.808 5e-97
388519397305 unknown [Medicago truncatula] 1.0 0.737 0.808 3e-96
334187506315 syntaxin-132 [Arabidopsis thaliana] gi|3 0.995 0.711 0.862 1e-93
18415701304 syntaxin-132 [Arabidopsis thaliana] gi|2 0.995 0.736 0.862 1e-93
449446742308 PREDICTED: putative syntaxin-131-like [C 1.0 0.730 0.84 7e-93
297806847304 SYP132 [Arabidopsis lyrata subsp. lyrata 0.995 0.736 0.853 7e-93
>gi|224146010|ref|XP_002325846.1| predicted protein [Populus trichocarpa] gi|222862721|gb|EEF00228.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/225 (89%), Positives = 215/225 (95%)

Query: 1   MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKM 60
           MEKDVDEVGKI+R IKSK+EELD+ENL++RQKPGCGKGTGVDRSRT+TT+ LKKK KDKM
Sbjct: 80  MEKDVDEVGKIARSIKSKLEELDKENLSNRQKPGCGKGTGVDRSRTSTTIALKKKLKDKM 139

Query: 61  GEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQI 120
            EFQ LRENIHQEYREVVERRV+TVTG RADEETID LIETGDSEQIFQKAIQEQGRGQI
Sbjct: 140 AEFQTLRENIHQEYREVVERRVFTVTGTRADEETIDTLIETGDSEQIFQKAIQEQGRGQI 199

Query: 121 MDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180
            DTLAEIQERHDAVRDLERKLL+LQQIFLDMAVLVDAQGDMLDNIESQVS+AVDHVQSGN
Sbjct: 200 TDTLAEIQERHDAVRDLERKLLDLQQIFLDMAVLVDAQGDMLDNIESQVSNAVDHVQSGN 259

Query: 181 TALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA 225
            ALQKAKKLQ+NSRKWMCIAIIILLIIVAIIVV V+KPW++NKGA
Sbjct: 260 VALQKAKKLQRNSRKWMCIAIIILLIIVAIIVVTVLKPWNNNKGA 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439283|ref|XP_002266162.1| PREDICTED: putative syntaxin-131 [Vitis vinifera] gi|296089302|emb|CBI39074.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255569518|ref|XP_002525726.1| syntaxin, putative [Ricinus communis] gi|223535026|gb|EEF36709.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15228637|ref|NP_187030.1| syntaxin 1B/2/3 [Arabidopsis thaliana] gi|28380139|sp|Q9SRV7.1|SY131_ARATH RecName: Full=Putative syntaxin-131; Short=AtSYP131 gi|6006872|gb|AAF00648.1|AC009540_25 s-syntaxin-like protein [Arabidopsis thaliana] gi|332640474|gb|AEE73995.1| syntaxin 1B/2/3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828858|ref|XP_002882311.1| SYP131 [Arabidopsis lyrata subsp. lyrata] gi|297328151|gb|EFH58570.1| SYP131 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388519397|gb|AFK47760.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|334187506|ref|NP_001190256.1| syntaxin-132 [Arabidopsis thaliana] gi|332003861|gb|AED91244.1| syntaxin-132 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18415701|ref|NP_568187.1| syntaxin-132 [Arabidopsis thaliana] gi|28380129|sp|Q8VZU2.1|SY132_ARATH RecName: Full=Syntaxin-132; Short=AtSYP132 gi|17380724|gb|AAL36192.1| putative syntaxin [Arabidopsis thaliana] gi|21436145|gb|AAM51319.1| putative syntaxin [Arabidopsis thaliana] gi|332003859|gb|AED91242.1| syntaxin-132 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449446742|ref|XP_004141130.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297806847|ref|XP_002871307.1| SYP132 [Arabidopsis lyrata subsp. lyrata] gi|297317144|gb|EFH47566.1| SYP132 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 1.0 0.735 0.702 1.6e-79
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.88 0.664 0.515 4.1e-49
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.995 0.647 0.459 8.5e-49
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.88 0.649 0.510 1.1e-48
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.88 0.653 0.5 7.7e-48
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.995 0.656 0.459 6.2e-46
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.813 0.590 0.425 2.1e-36
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.844 0.622 0.329 4.6e-25
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.866 0.583 0.311 1.9e-19
ZFIN|ZDB-GENE-040426-1489288 stx3a "syntaxin 3A" [Danio rer 0.826 0.645 0.285 9.5e-18
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 158/225 (70%), Positives = 176/225 (78%)

Query:     1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKM 60
             ME+DVDEVG+ISRFIK KIEELDRENL +R KPGCGKGTGVDR+RTATT+ +KKKFKDK+
Sbjct:    82 MERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKI 141

Query:    61 GEFQVLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQI 120
              EFQ LR+NI Q              G+RADEE ID+LIETGDSEQIFQKAI+EQGRGQI
Sbjct:   142 SEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQI 201

Query:   121 MDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180
             MDTLAEIQERHDAVRDLE+KLL+LQQ+FLDMAVLVDAQG+MLDNIE+ VSSAVDHVQSGN
Sbjct:   202 MDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGN 261

Query:   181 TALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXXKPWSSNKGA 225
               L KA K QK+SRKWMC                  KPW+   GA
Sbjct:   262 NQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLKPWTQKNGA 306
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1489 stx3a "syntaxin 3A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRV7SY131_ARATHNo assigned EC number0.80881.00.7352yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 1e-22
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 2e-18
pfam0573962 pfam05739, SNARE, SNARE domain 2e-14
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 3e-14
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 6e-12
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 1e-11
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 1e-09
pfam00804103 pfam00804, Syntaxin, Syntaxin 4e-04
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score = 89.3 bits (222), Expect = 1e-22
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 1   MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKM 60
           +E  V E+ K+++ IK K++EL+  N  +    G      VDR R     GL KKF + M
Sbjct: 46  LESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSS----VDRIRKTQHSGLSKKFVEVM 101

Query: 61  GEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA 111
            EF   +    + Y+E ++R++    G+  DEE  D L     SE    + 
Sbjct: 102 TEFNKAQRKYRERYKERIQRQLEITGGEATDEELEDMLESGN-SEIFTSQI 151

Length = 151
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.96
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 99.95
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.87
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.77
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.61
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.53
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.37
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.26
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.13
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 98.6
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.51
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 98.11
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 98.03
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.92
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 97.66
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 97.1
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 96.79
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 96.65
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 96.46
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.41
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 96.04
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 95.99
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 95.22
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 94.51
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 94.09
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 93.36
KOG2678244 consensus Predicted membrane protein [Function unk 91.13
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 90.47
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 88.48
PF1071785 ODV-E18: Occlusion-derived virus envelope protein 88.24
PF1116698 DUF2951: Protein of unknown function (DUF2951); In 87.91
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 86.48
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 81.42
PF1071785 ODV-E18: Occlusion-derived virus envelope protein 80.35
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-47  Score=329.72  Aligned_cols=217  Identities=44%  Similarity=0.698  Sum_probs=199.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027280            1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVER   80 (225)
Q Consensus         1 ~~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r   80 (225)
                      |++.+++|...++.||.+|+.+++++...+..+   +.++..|+|++|+..++++|.++|.+|+.+|..|+.+|++++.|
T Consensus        80 l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~R  156 (297)
T KOG0810|consen   80 LESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQR  156 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999988764333   33455799999999999999999999999999999999999988


Q ss_pred             hhhhcCCCCCChHHHHHhhhcCChhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 027280           81 RVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGD  160 (225)
Q Consensus        81 ~~~~i~~~~~t~eeie~~~e~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge  160 (225)
                      +|..+.+..++|++++.++++|+++.|++..+.  ++++.+.+|.++++||.+|.+||++|.|||+||.||++||+.|||
T Consensus       157 ql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgE  234 (297)
T KOG0810|consen  157 QLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGE  234 (297)
T ss_pred             HHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            776655448999999999999999999998887  467788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHhccccCC
Q 027280          161 MLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSN  222 (225)
Q Consensus       161 ~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ii~~~i~~~~~~~  222 (225)
                      |||+||+||.+|.+||++|..++.+|..||+++|||+||++++++|+++++++++++||++.
T Consensus       235 mvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~~  296 (297)
T KOG0810|consen  235 MVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVLF  296 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999864

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source Back     alignment and domain information
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 5e-14
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 5e-12
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 2e-11
1jth_B77 Crystal Structure And Biophysical Properties Of A C 3e-11
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 3e-11
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 3e-11
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 2e-10
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 1e-09
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 2e-09
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 3e-09
3rk2_B65 Truncated Snare Complex Length = 65 6e-09
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 1e-07
1gl2_B65 Crystal Structure Of An Endosomal Snare Core Comple 3e-07
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 18/197 (9%)
Query: 5   VDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQ 64
           + ++ K +  ++SK++ +++   +  Q+ G  + +   R R      L +KF + M E+ 
Sbjct: 91  MSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN 147
Query: 65  VLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDT- 123
             + + ++              G+    E ++ ++E+G+   IF         G IMD+ 
Sbjct: 148 ATQSD-YRERCKGRIQRQLEITGRTTTSEELEDMLESGNP-AIF-------ASGIIMDSS 198
Query: 124 -----LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178
                L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+ 
Sbjct: 199 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVER 258
Query: 179 GNTALQKAKKLQKNSRK 195
             +  +KA K Q  +R+
Sbjct: 259 AVSDTKKAVKYQSKARR 275
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex Length = 65 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 6e-38
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 4e-33
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 3e-30
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 2e-28
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 2e-26
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 3e-24
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 1e-22
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 4e-22
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 3e-21
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 2e-20
1s94_A180 S-syntaxin; three helix bundle, structural plastic 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 2e-04
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  131 bits (331), Expect = 6e-38
 Identities = 51/199 (25%), Positives = 105/199 (52%), Gaps = 6/199 (3%)

Query: 1   MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKM 60
           +E+ + ++ K +  ++SK++ +++      Q+ G  + +   R R      L +KF + M
Sbjct: 75  LEELMSDIKKTANKVRSKLKSIEQSI---EQEEGLNRSSADLRIRKTQHSTLSRKFVEVM 131

Query: 61  GEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQI 120
            E+   + +  +  +  ++R+   +TG+    E ++ ++E+G+        I +    + 
Sbjct: 132 SEYNATQSDYRERCKGRIQRQ-LEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK- 189

Query: 121 MDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180
              L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+   
Sbjct: 190 -QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAV 248

Query: 181 TALQKAKKLQKNSRKWMCI 199
           +  +KA K Q  +R+   +
Sbjct: 249 SDTKKAVKYQSKARRKKIM 267
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.97
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.96
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.92
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.91
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.89
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.88
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.86
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.83
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.8
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.8
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.53
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.13
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.62
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.53
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.49
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.43
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 97.31
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.24
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 97.03
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.95
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 96.68
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 96.04
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.47
3b5n_C70 Protein transport protein SEC9; snare complex, syn 94.38
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 94.34
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 93.73
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 91.07
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 81.82
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 80.46
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=4.1e-38  Score=270.97  Aligned_cols=192  Identities=26%  Similarity=0.458  Sum_probs=150.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027280            2 EKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERR   81 (225)
Q Consensus         2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~   81 (225)
                      +..+.+|+.+++.|+.+|+.|+..+...   +++.+++++.|+|++|+.+|+++|+++|.+|+.+|..|.+.+|.++.|+
T Consensus        76 ~~l~~~i~~~~~~i~~~Lk~l~~~~~~~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq  152 (267)
T 1dn1_B           76 EELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQ  152 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            5678899999999999999999875432   1223456778999999999999999999999999999999999999775


Q ss_pred             hhhcCCCCCChHHHHHhhhcCChhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 027280           82 VYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDM  161 (225)
Q Consensus        82 ~~~i~~~~~t~eeie~~~e~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~  161 (225)
                       +.+.||++++++++.++++|++..|.+..+.  ..++++.++.++++||++|.+||++|.+|++||.||+.||++||++
T Consensus       153 -~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~--~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~  229 (267)
T 1dn1_B          153 -LEITGRTTTSEELEDMLESGNPAIFASGIIM--DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEM  229 (267)
T ss_dssp             -HHHTTCCCCHHHHHHHHHTCSSCTTTTTCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSG
T ss_pred             -hhccCCCCCHHHHHHHHhCCcHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             4678999999999999998877544332222  2345677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Q 027280          162 LDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI  199 (225)
Q Consensus       162 id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~  199 (225)
                      ||+||+||+.|..||+.|..+|.+|.+||+++|||+||
T Consensus       230 id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~  267 (267)
T 1dn1_B          230 IDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM  267 (267)
T ss_dssp             GGCHHHHHHTCCCCCCCCC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            99999999999999999999999999999999999986
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 225
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 1e-19
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 3e-11
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (200), Expect = 1e-19
 Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 1   MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKM 60
           ++  V +   +   +K++I+   R+                D ++ A     +++F   +
Sbjct: 51  LDNFVAQATDLQFKLKNEIKSAQRDG-------------IHDTNKQAQAENSRQRFLKLI 97

Query: 61  GEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQI 120
            +++++  N  +E +E  +R+   +  +  ++E    + + G  +   Q  +    RG+ 
Sbjct: 98  QDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEA 157

Query: 121 MDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQ 158
              LAE+Q RH  +  LE+ + EL Q+F DM  LV  Q
Sbjct: 158 KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.74
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.2
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3.3e-18  Score=136.54  Aligned_cols=117  Identities=28%  Similarity=0.481  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCChHHHHHhhhcCChhHHHHHH-HHHhchhc
Q 027280           41 VDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA-IQEQGRGQ  119 (225)
Q Consensus        41 e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~i~~~~~t~eeie~~~e~~~~~~~~q~~-~~~~~~~q  119 (225)
                      +.|++++++..|+++|.+++..|+.+|..|...+|.++.|++ .+.+|++++++++.....++....+... +......+
T Consensus        78 ~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (196)
T d1fioa_          78 HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQY-MIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGE  156 (196)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTTCCHHHHHHHTSHHHHHHHHHHHTC------C
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCCccchhhhHhhccccchHHHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999987765 5567899999998877654443433332 22233445


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027280          120 IMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQ  158 (225)
Q Consensus       120 ~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Q  158 (225)
                      ....+.++++|+++|.+||++|.||++||.|||.||++|
T Consensus       157 ~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ  195 (196)
T d1fioa_         157 AKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence            667899999999999999999999999999999999987
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure