Citrus Sinensis ID: 027304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMHHSVRSKRRHSR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEcccccEEccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccEEEccccEEEcHHHcccccccccccccccccccccccEEEEEcccccccEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MTMELLRNLIPLMSLCFLVVFVQCKssllgvhpldekyfskevikckdgsksftrdrlndnfcdcidgtdepgtsacpagkfycgnvgstpqfifssrvndricdccdgsdeydssikcpntcvmggnieYKAQSYISTindagsidargakipvnkedLIERLGVlfvhnryapvklkslrDLSFSLVFADVKMVVILQSFVIIFLVFLWIMHHSVRSKRRHSR
Flexible Loop (DISEMBL)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVikckdgsksftrdrlnDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMHHsvrskrrhsr
Low Complexity Region (SEG)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMhhsvrskrrhsr
Disordered region (IsUnstruct)
****LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCC*************NTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMHH**********
Disordered Region (DISOPRED)
******R**IPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYIST*********************************************************VILQSFVIIFLVFLWIMHH**********
Disordered Region (DISEMBL)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMHH**********
Disordered Region (DISPRO)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMHHSVR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFADVKMVVILQSFVIIFLVFLWIMHHSVRSKRRHSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
O08795	521	Glucosidase 2 subunit bet	yes	no	0.56	0.241	0.418	5e-26
P14314	528	Glucosidase 2 subunit bet	yes	no	0.564	0.240	0.415	8e-26
Q28034	533	Glucosidase 2 subunit bet	yes	no	0.564	0.238	0.415	5e-24
Q9USH8	506	Glucosidase 2 subunit bet	yes	no	0.448	0.199	0.486	1e-23
Q04924	702	Glucosidase 2 subunit bet	yes	no	0.248	0.079	0.485	1e-10
Q7TQH7	713	Low-density lipoprotein r	no	no	0.28	0.088	0.373	3e-05

>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 3/129 (2%)

Query: 16  CFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS 75
           C+ V   + +   L  H     Y   +   C DG+ +   D++ND++CDC DG+DEPGT+
Sbjct: 12  CWAVEVKRPRGVSLSNHHF---YEESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTA 68

Query: 76  ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQS 135
           ACP G F+C N G  P +I SSRVND +CDCCDG+DEY+S   C NTC   G  E ++  
Sbjct: 69  ACPNGSFHCTNTGYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKGRKEKESLQ 128

Query: 136 YISTINDAG 144
            ++ +   G
Sbjct: 129 QLAEVTREG 137

Regulatory subunit of glucosidase II.
Mus musculus (taxid: 10090)

>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 3/130 (2%)

Query: 15  LCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74
           +C+ V   + +   L  H     Y   +   C DGS +   D++ND++CDC DG+DEPGT
Sbjct: 11  MCWAVEVKRPRGVSLTNHHF---YDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGT 67

Query: 75  SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQ 134
           +ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC   G  E ++ 
Sbjct: 68  AACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKGRKERESL 127

Query: 135 SYISTINDAG 144
             ++ +   G
Sbjct: 128 QQMAEVTREG 137

Regulatory subunit of glucosidase II.

Homo sapiens (taxid: 9606)

>sp|Q28034|GLU2B_BOVIN Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 3/130 (2%)

Query: 15  LCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT 74
           +C+ V   + +   L  H     Y   +   C DGS S   D++ND++CDC DG+DEPGT
Sbjct: 10  MCWAVEVRRPRGVSLTNHHF---YDESKPFTCLDGSASIPFDQVNDDYCDCKDGSDEPGT 66

Query: 75  SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQ 134
           +ACP G F+C N G    +I S  VND +CDCCDG+DEY+S I C NTC   G  E +  
Sbjct: 67  AACPNGSFHCTNTGYKALYISSRWVNDGVCDCCDGTDEYNSGIVCENTCKEKGRKERETL 126

Query: 135 SYISTINDAG 144
             ++ +   G
Sbjct: 127 QQMAEVTREG 136

Regulatory subunit of glucosidase II.

Bos taurus (taxid: 9913)

>sp|Q9USH8|GLU2B_SCHPO Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtb1 PE=1 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 71/109 (65%), Gaps = 8/109 (7%)

Query: 45  KCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRIC 104
           KC    K  + +++ND++CDC DG+DEPGTSAC  GKF+C N G    +I S+RV+D +C
Sbjct: 47  KCLGSDKLISFNQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106

Query: 105 DCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKI 153
           DCCDGSDE  S IKCPNTC        KA+ Y++T+ +   +   G KI
Sbjct: 107 DCCDGSDE--SLIKCPNTCAQ------KAREYLATLEEHNRLVKNGLKI 147

Subunit of glucosidase 2, which cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins. Specifically required for the cleavage of the final glucose.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q04924|GLU2B_YEAST Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GTB1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 41/70 (58%), Gaps = 14/70 (20%)

Query: 57  RLNDNFCDCIDGTDEPGTSAC----------PAGK----FYCGNVGSTPQFIFSSRVNDR 102
           ++ND  CDC DG+DEPG++AC            GK    FYC N G  P++I  S V D 
Sbjct: 63  QINDGVCDCPDGSDEPGSAACVEDIFKSVAEGGGKVNKYFYCDNKGFIPRYIRKSEVADG 122

Query: 103 ICDCCDGSDE 112
           ICDCCD SDE
Sbjct: 123 ICDCCDCSDE 132

Subunit of glucosidase 2, which cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins. Specifically required for the cleavage of the final glucose.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q7TQH7|LRP10_MOUSE Low-density lipoprotein receptor-related protein 10 OS=Mus musculus GN=Lrp10 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 49  GSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGS---TPQFIFSSRVNDRICD 105
           G + ++  +  D   DC DGTDE G   CP G F CG  G+   T  ++ + R N +   
Sbjct: 329 GERCYSEAQRCDGSWDCADGTDEEGCPGCPPGHFPCGAAGTPGATACYLPADRCNYQTF- 387

Query: 106 CCDGSDE 112
           C DG+DE
Sbjct: 388 CADGADE 394

Probable receptor, which is involved in the internalization of lipophilic molecules and/or signal transduction. May be involved in the uptake of lipoprotein APOE in liver.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
224122030	213	predicted protein [Populus trichocarpa]	0.817	0.863	0.548	9e-57
449453541	199	PREDICTED: uncharacterized protein LOC10	0.826	0.934	0.546	1e-56
255568349	210	glucosidase II beta subunit, putative [R	0.675	0.723	0.681	2e-55
302143378	205	unnamed protein product [Vitis vinifera]	0.724	0.795	0.615	3e-54
225446519	197	PREDICTED: glucosidase 2 subunit beta-li	0.724	0.827	0.615	3e-54
18405960	212	protein kinase C substrate, heavy chain-	0.831	0.882	0.535	4e-53
297827917	211	hypothetical protein ARALYDRAFT_903594 [	0.813	0.867	0.502	2e-51
297788944	211	predicted protein [Arabidopsis lyrata su	0.813	0.867	0.502	2e-51
224146511	136	predicted protein [Populus trichocarpa]	0.546	0.904	0.790	5e-51
357474521	225	Glucosidase 2 subunit beta [Medicago tru	0.866	0.866	0.551	2e-48

>gi|224122030|ref|XP_002330713.1| predicted protein [Populus trichocarpa] gi|222872317|gb|EEF09448.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 119/217 (54%), Positives = 145/217 (66%), Gaps = 33/217 (15%)

Query: 8   NLIP-LMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCI 66
           NLIP ++SL FLV  V   S LLG+HPLDEKYF  +VIKCKDGSKSF+RDRLNDNFCDC+
Sbjct: 27  NLIPFIISLYFLVPSVHSFSPLLGIHPLDEKYFGSQVIKCKDGSKSFSRDRLNDNFCDCL 86

Query: 67  DGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMG 126
           DGTDEPGTSACP GKFYC N GSTP FIFSSRVND+ICDCCDGSDEYDS I CP TCVMG
Sbjct: 87  DGTDEPGTSACPRGKFYCRNAGSTPNFIFSSRVNDQICDCCDGSDEYDSGINCPRTCVMG 146

Query: 127 GNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSF 186
           GN+EY+A +YIS       ID + +K  +  E+L+++   L                   
Sbjct: 147 GNLEYRAGNYIS------RIDLKESKKGLISEELLQKARGL------------------- 181

Query: 187 SLVFADVKMVVILQSFVIIFLVFLWIMHHSVRSKRRH 223
                  K+++ILQ  +   +V   I +  ++SK+R 
Sbjct: 182 -------KVIIILQVVIFGCVVIYRIFNRRIKSKKRR 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453541|ref|XP_004144515.1| PREDICTED: uncharacterized protein LOC101205514 [Cucumis sativus] gi|449517285|ref|XP_004165676.1| PREDICTED: uncharacterized protein LOC101230880 [Cucumis sativus]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 117/214 (54%), Positives = 141/214 (65%), Gaps = 28/214 (13%)

Query: 12  LMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE 71
           L+S+C     V+   S +GVHPLDEKY+S EVIKCKDGS+SFT DRLNDNFCDC+DGTDE
Sbjct: 14  LLSICLFFTSVRSAPSFIGVHPLDEKYYSSEVIKCKDGSRSFTIDRLNDNFCDCVDGTDE 73

Query: 72  PGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEY 131
           PGTSAC  GKFYC N+GSTP+FIFSSRVND ICDCCDGSDEY+ +I CPNTCVMGGN+ Y
Sbjct: 74  PGTSACARGKFYCRNMGSTPRFIFSSRVNDHICDCCDGSDEYEGNIFCPNTCVMGGNM-Y 132

Query: 132 KAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDLSFSLVFA 191
           K+++ IST  D   I  R  K  + KEDL ++L  L                        
Sbjct: 133 KSKNDISTTRDV-DIVIRKVKEEITKEDLFQKLTGL------------------------ 167

Query: 192 DVKMVVILQSFVIIFLVFLWIMHHSVRSKRRHSR 225
             K+V+ILQ  +  F + +W     V+SKRR  R
Sbjct: 168 --KLVIILQVALTSFAILIWANRCRVKSKRRRHR 199

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568349|ref|XP_002525149.1| glucosidase II beta subunit, putative [Ricinus communis] gi|223535608|gb|EEF37276.1| glucosidase II beta subunit, putative [Ricinus communis]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 124/160 (77%), Gaps = 8/160 (5%)

Query: 6   LRNLIP--LMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
           L N IP  L+S  F + F   KSSLLGVHPLDEKYF+  VI+CKDGSKSFTRD  NDNFC
Sbjct: 10  LHNFIPFSLISFYFFIPFAHSKSSLLGVHPLDEKYFASRVIQCKDGSKSFTRDCFNDNFC 69

Query: 64  DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
           DC+DGTDEPGTSACP GKFYC N+GS PQFIFSSRVND+ICDCCDGSDEYDSS+ CPNTC
Sbjct: 70  DCVDGTDEPGTSACPRGKFYCRNLGSKPQFIFSSRVNDQICDCCDGSDEYDSSVNCPNTC 129

Query: 124 VMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIER 163
           VMGG++ Y+  S IS      SID   +K  V +EDL+ +
Sbjct: 130 VMGGDLNYRIGSRIS------SIDVNESKETVLREDLLHK 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143378|emb|CBI21939.3| unnamed protein product [Vitis vinifera]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 124/164 (75%), Gaps = 1/164 (0%)

Query: 1   MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLND 60
           M   L   LI L+S  FL+ +      +LG+HPLDEKY++ + IKCKDGSK F + R+ND
Sbjct: 1   MEPSLCFFLIALISAFFLITYSS-ALPILGIHPLDEKYYASQAIKCKDGSKFFNKARIND 59

Query: 61  NFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP 120
           NFCDCIDGTDEPGTSACPAGKFYC NVGSTP+F+FSS+VND  CDCCDGSDEY  SI CP
Sbjct: 60  NFCDCIDGTDEPGTSACPAGKFYCKNVGSTPKFLFSSQVNDHFCDCCDGSDEYSGSINCP 119

Query: 121 NTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERL 164
           NTCVMGG++EY+ +S++S I +   ID + AK  +N ED I +L
Sbjct: 120 NTCVMGGDVEYQTKSHVSAIGEVDPIDVKEAKTKLNLEDQIHKL 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446519|ref|XP_002278847.1| PREDICTED: glucosidase 2 subunit beta-like [Vitis vinifera]

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 124/164 (75%), Gaps = 1/164 (0%)

Query: 1   MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLND 60
           M   L   LI L+S  FL+ +      +LG+HPLDEKY++ + IKCKDGSK F + R+ND
Sbjct: 1   MEPSLCFFLIALISAFFLITYSS-ALPILGIHPLDEKYYASQAIKCKDGSKFFNKARIND 59

Query: 61  NFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP 120
           NFCDCIDGTDEPGTSACPAGKFYC NVGSTP+F+FSS+VND  CDCCDGSDEY  SI CP
Sbjct: 60  NFCDCIDGTDEPGTSACPAGKFYCKNVGSTPKFLFSSQVNDHFCDCCDGSDEYSGSINCP 119

Query: 121 NTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERL 164
           NTCVMGG++EY+ +S++S I +   ID + AK  +N ED I +L
Sbjct: 120 NTCVMGGDVEYQTKSHVSAIGEVDPIDVKEAKTKLNLEDQIHKL 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405960|ref|NP_565971.1| protein kinase C substrate, heavy chain-like protein [Arabidopsis thaliana] gi|20197489|gb|AAD23722.2| expressed protein [Arabidopsis thaliana] gi|21618247|gb|AAM67297.1| unknown [Arabidopsis thaliana] gi|30793891|gb|AAP40398.1| unknown protein [Arabidopsis thaliana] gi|30794054|gb|AAP40472.1| unknown protein [Arabidopsis thaliana] gi|110739276|dbj|BAF01551.1| hypothetical protein [Arabidopsis thaliana] gi|330255021|gb|AEC10115.1| protein kinase C substrate, heavy chain-like protein [Arabidopsis thaliana]

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 140/209 (66%), Gaps = 22/209 (10%)

Query: 5   LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
           LL+ ++   SL  +V+ V   S L+GVHPLDEKYF  +VIKCKDGSKSFTRDRLNDNFCD
Sbjct: 2   LLQCVVLCSSLAVVVISVASTSPLVGVHPLDEKYFDSDVIKCKDGSKSFTRDRLNDNFCD 61

Query: 65  CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
           C+DGTDEPGTSACP GKFYC N+GS+P+F++SSRVNDRICDCCDGSDEY+SSI CPNTC+
Sbjct: 62  CLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCI 121

Query: 125 MGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKSLRDL 184
           MGGN+ Y  +       +  SI  +    P  KE                   + +L+D+
Sbjct: 122 MGGNVNYIYKPRA----NLKSIHLQLGSTPHPKEFY----------------TIGNLQDM 161

Query: 185 SFSLVFADVKMVVILQSFVIIFLVFLWIM 213
             +L    +K+V  LQ   I FLV LW++
Sbjct: 162 VKNL--QGMKLVFALQMVFIGFLVILWML 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827917|ref|XP_002881841.1| hypothetical protein ARALYDRAFT_903594 [Arabidopsis lyrata subsp. lyrata] gi|297327680|gb|EFH58100.1| hypothetical protein ARALYDRAFT_903594 [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/213 (50%), Positives = 139/213 (65%), Gaps = 30/213 (14%)

Query: 5   LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
           +L   + L SL  +VV      S LGVHPLDEKYF  ++IKCKDGSKSF++DRLNDNFCD
Sbjct: 1   MLLQCVVLCSLLAIVVVSVASISPLGVHPLDEKYFDSDIIKCKDGSKSFSKDRLNDNFCD 60

Query: 65  CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
           C+DGTDEPGTSACP GKFYC N+GS+P+F++SSRVNDRICDCCDGSDEY+SSI CPNTCV
Sbjct: 61  CLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCV 120

Query: 125 MGGNIE--YKAQSYISTIN--DAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKS 180
           MGGN+   YK ++ + +I+     ++  + +    N +D+++ L                
Sbjct: 121 MGGNVNYIYKPRTNLKSIHLQLGSTLHPKESYTMGNLQDMVKNL---------------- 164

Query: 181 LRDLSFSLVFADVKMVVILQSFVIIFLVFLWIM 213
                       +K+V  LQ   I FLV LW++
Sbjct: 165 ----------QGMKLVFALQMVFIGFLVILWML 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297788944|ref|XP_002862496.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297308050|gb|EFH38754.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/213 (50%), Positives = 139/213 (65%), Gaps = 30/213 (14%)

Query: 5   LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
           +L   + L SL  +VV      S LGVHPLDEKYF  ++IKCKDGSKSF++DRLNDNFCD
Sbjct: 1   MLLQCVVLCSLLAIVVVSVASISPLGVHPLDEKYFDSDIIKCKDGSKSFSKDRLNDNFCD 60

Query: 65  CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
           C+DGTDEPGTSACP GKFYC N+GS+P+F++SSRVNDRICDCCDGSDEY+SSI CPNTCV
Sbjct: 61  CLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCV 120

Query: 125 MGGNIE--YKAQSYISTIN--DAGSIDARGAKIPVNKEDLIERLGVLFVHNRYAPVKLKS 180
           MGGN+   YK ++ + +I+     ++  + +    N +D+++ L                
Sbjct: 121 MGGNVNYIYKPRTNLKSIHFQLGSTLHPKESYTMGNLQDMVKNL---------------- 164

Query: 181 LRDLSFSLVFADVKMVVILQSFVIIFLVFLWIM 213
                       +K+V  LQ   I FLV LW++
Sbjct: 165 ----------QGMKLVFALQMVFIGFLVILWML 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146511|ref|XP_002326032.1| predicted protein [Populus trichocarpa] gi|222862907|gb|EEF00414.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 109/124 (87%), Gaps = 1/124 (0%)

Query: 9   LIP-LMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCID 67
           LIP ++SL FL   VQ  S LLG+HPLDEKYF  +VIKCKDGSKSF+RDRLNDNFCDC+D
Sbjct: 13  LIPFIISLYFLGSSVQSLSPLLGIHPLDEKYFGSQVIKCKDGSKSFSRDRLNDNFCDCLD 72

Query: 68  GTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGG 127
           GTDEPGTSACP+GKFYC N GSTP+FIFSSRVND+ICDCCDGSDEY S I CPNTCVMGG
Sbjct: 73  GTDEPGTSACPSGKFYCRNAGSTPKFIFSSRVNDQICDCCDGSDEYGSGINCPNTCVMGG 132

Query: 128 NIEY 131
           ++EY
Sbjct: 133 DLEY 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474521|ref|XP_003607545.1| Glucosidase 2 subunit beta [Medicago truncatula] gi|358347205|ref|XP_003637650.1| Glucosidase 2 subunit beta [Medicago truncatula] gi|355503585|gb|AES84788.1| Glucosidase 2 subunit beta [Medicago truncatula] gi|355508600|gb|AES89742.1| Glucosidase 2 subunit beta [Medicago truncatula]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/212 (55%), Positives = 133/212 (62%), Gaps = 17/212 (8%)

Query: 14  SLCF------LVVFVQCKS----SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
           SLCF      LV    C S    S LGVHPLD +Y+S E IKCKDGSKSF+RDRLND+FC
Sbjct: 3   SLCFHSVLLLLVSTASCLSFSHPSFLGVHPLDAQYYSSEFIKCKDGSKSFSRDRLNDDFC 62

Query: 64  DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
           DC DGTDEPGTSAC AGKFYC N+GS PQFI SS VNDR CDCCDGSDEYD +I+CPNTC
Sbjct: 63  DCSDGTDEPGTSACSAGKFYCRNLGSKPQFIVSSHVNDRFCDCCDGSDEYDGTIRCPNTC 122

Query: 124 VMGGNIEYKAQSYISTINDAGSIDAR----GAKIPVNKEDLIERLGVLFVHNRYAPVKLK 179
           VMGGN E    +Y S + D      +    GAK   +   L   L VL   N   PV   
Sbjct: 123 VMGGNAENMYGNYNSKVRDQSVFSEKETENGAKAEESAHSLSGNLLVLIQQN--FPV-FT 179

Query: 180 SLRDLSFSLVFADVKMVVILQSFVIIFLVFLW 211
            L      +    +K+ +ILQ  V+ FLVFLW
Sbjct: 180 ILGKYKLEVAGLGLKLAIILQVVVVAFLVFLW 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2053771	212	AT2G42390 "AT2G42390" [Arabido	0.711	0.754	0.615	1.1e-56
TAIR|locus:2161078	647	PSL4 "PRIORITY IN SWEET LIFE 4	0.48	0.166	0.631	5.7e-37
UNIPROTKB|K7EJ70	144	PRKCSH "Glucosidase 2 subunit	0.604	0.944	0.432	2.2e-27
UNIPROTKB|K7EKX1	140	PRKCSH "Glucosidase 2 subunit	0.604	0.971	0.432	2.2e-27
UNIPROTKB|K7EPW7	168	PRKCSH "Glucosidase 2 subunit	0.604	0.809	0.432	2.2e-27
ZFIN|ZDB-GENE-040426-770	529	prkcsh "protein kinase C subst	0.506	0.215	0.512	4.4e-27
MGI|MGI:107877	521	Prkcsh "protein kinase C subst	0.608	0.262	0.428	5.2e-27
RGD|1309628	525	Prkcsh "protein kinase C subst	0.586	0.251	0.445	7e-27
UNIPROTKB|P14314	528	PRKCSH "Glucosidase 2 subunit	0.604	0.257	0.432	7.2e-27
UNIPROTKB|K7ELL7	535	PRKCSH "Glucosidase 2 subunit	0.604	0.254	0.432	7.7e-27

TAIR|locus:2053771 AT2G42390 "AT2G42390" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
 Identities = 101/164 (61%), Positives = 127/164 (77%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
             LL+ ++   SL  +V+ V   S L+GVHPLDEKYF  +VIKCKDGSKSFTRDRLNDNFCD
Sbjct:     2 LLQCVVLCSSLAVVVISVASTSPLVGVHPLDEKYFDSDVIKCKDGSKSFTRDRLNDNFCD 61

Query:    65 CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
             C+DGTDEPGTSACP GKFYC N+GS+P+F++SSRVNDRICDCCDGSDEY+SSI CPNTC+
Sbjct:    62 CLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCI 121

Query:   125 MGGNIEY--KAQSYISTIN-DAGSIDARGAKIPV-NKEDLIERL 164
             MGGN+ Y  K ++ + +I+   GS         + N +D+++ L
Sbjct:   122 MGGNVNYIYKPRANLKSIHLQLGSTPHPKEFYTIGNLQDMVKNL 165

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161078 PSL4 "PRIORITY IN SWEET LIFE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 5.7e-37, P = 5.7e-37
 Identities = 72/114 (63%), Positives = 84/114 (73%)

Query:    29 LGVHPLDEKYF-SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNV 87
             LG+ P DEKY+ S   IKCKDGSK FT+ +LND+FCDC DGTDEPGTSACP GKFYC N 
Sbjct:    38 LGISPQDEKYYKSSSEIKCKDGSKKFTKAQLNDDFCDCSDGTDEPGTSACPTGKFYCRNA 97

Query:    88 GSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGG-----NIEYKAQSY 136
             G +P  +FSSRVND ICDCCDGSDEYD  + C NTC   G     N++ K ++Y
Sbjct:    98 GHSPVILFSSRVNDGICDCCDGSDEYDGHVSCQNTCWEAGKAARENLKKKIETY 151

GO:0009507 "chloroplast" evidence=ISM

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|K7EJ70 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0006491 "N-glycan processing" evidence=IEA

UNIPROTKB|K7EKX1 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0006491 "N-glycan processing" evidence=IEA

UNIPROTKB|K7EPW7 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0006491 "N-glycan processing" evidence=IEA

ZFIN|ZDB-GENE-040426-770 prkcsh "protein kinase C substrate 80K-H" [Danio rerio (taxid:7955)]

 Score = 309 (113.8 bits), Expect = 4.4e-27, P = 4.4e-27
 Identities = 60/117 (51%), Positives = 76/117 (64%)

Query:    30 GVHPLDEKYFSKE--VIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNV 87
             GV PL +K F +E     C DGSK+   D++ND++CDC  G+DEPGT+ACP GKF+C N 
Sbjct:    27 GV-PLSKKPFYEENKPFTCLDGSKTILFDQVNDDYCDCKGGSDEPGTAACPNGKFHCTNA 85

Query:    88 GSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 144
             G  P FI SSR+ND ICDCCD +DEY+S  KC NTC   G  E +    ++ I   G
Sbjct:    86 GYKPTFIPSSRINDGICDCCDTTDEYNSGAKCENTCKELGRKEREVLQKMAEITKEG 142

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0048793 "pronephros development" evidence=IGI

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

MGI|MGI:107877 Prkcsh "protein kinase C substrate 80K-H" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 5.2e-27, P = 5.2e-27
 Identities = 60/140 (42%), Positives = 85/140 (60%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
             +L  L+ L+ LC+ V   + +   L  H   E+  SK    C DG+ +   D++ND++CD
Sbjct:     1 MLLLLLLLLPLCWAVEVKRPRGVSLSNHHFYEE--SKP-FTCLDGTATIPFDQVNDDYCD 57

Query:    65 CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
             C DG+DEPGT+ACP G F+C N G  P +I SSRVND +CDCCDG+DEY+S   C NTC 
Sbjct:    58 CKDGSDEPGTAACPNGSFHCTNTGYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCR 117

Query:   125 MGGNIEYKAQSYISTINDAG 144
               G  E ++   ++ +   G
Sbjct:   118 EKGRKEKESLQQLAEVTREG 137

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001889 "liver development" evidence=IGI

GO:0003723 "RNA binding" evidence=IDA

GO:0005080 "protein kinase C binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006491 "N-glycan processing" evidence=TAS

GO:0006807 "nitrogen compound metabolic process" evidence=IGI

GO:0010977 "negative regulation of neuron projection development" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0017177 "glucosidase II complex" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0072001 "renal system development" evidence=IGI

RGD|1309628 Prkcsh "protein kinase C substrate 80K-H" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 7.0e-27, P = 7.0e-27
 Identities = 61/137 (44%), Positives = 84/137 (61%)

Query:     9 LIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCID 67
             L+ L+ LC+ V   + +  SL   H  DE   SK    C DG+ +   D++ND++CDC D
Sbjct:     4 LLLLLPLCWAVEVKRPRGVSLSNHHFYDE---SKP-FTCLDGTATIPFDQVNDDYCDCKD 59

Query:    68 GTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGG 127
             G+DEPGT+ACP G F+C N G  P +I SSRVND +CDCCDG+DEY+S   C NTC   G
Sbjct:    60 GSDEPGTAACPNGSFHCTNTGYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKG 119

Query:   128 NIEYKAQSYISTINDAG 144
               E ++   ++ +   G
Sbjct:   120 RKEKESLQQLAEVTREG 136

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA;ISO

GO:0005080 "protein kinase C binding" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=TAS

GO:0006491 "N-glycan processing" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=ISO

GO:0010977 "negative regulation of neuron projection development" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0017177 "glucosidase II complex" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=IPI

GO:0072001 "renal system development" evidence=ISO

UNIPROTKB|P14314 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 7.2e-27, P = 7.2e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005622 "intracellular" evidence=NAS

GO:0007243 "intracellular protein kinase cascade" evidence=NAS

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

UNIPROTKB|K7ELL7 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 7.7e-27, P = 7.7e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam12999	176	pfam12999, PRKCSH-like, Glucosidase II beta subuni	2e-31

>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like

 Score =  112 bits (283), Expect = 2e-31
 Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 24/162 (14%)

Query: 9   LIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEV---IKCKDGSK---SFTRDRLNDNF 62
           L PL+++  LV        L GV P +   +  +     KC + S+   SF  D++ND++
Sbjct: 2   LQPLLAISLLVA--IALGKLRGVSPDNLHLYQPDENGNWKCLNHSEIKLSF--DQVNDDY 57

Query: 63  CDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICD---CCDGSDEYDSSIKC 119
           CDC DG+DEPGT+AC  GKFYC N G  P +I S +V+D +CD   CCDGSDE  +  KC
Sbjct: 58  CDCPDGSDEPGTNACSNGKFYCANEGFIPGYIPSFKVDDGVCDYDICCDGSDE--ALGKC 115

Query: 120 PNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLI 161
           PN C         A+ +   + +  +    G KI   KE L+
Sbjct: 116 PNKCGE------IARQFEEYLTEHNNSVKNGLKI---KEGLL 148

The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II, which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyzes the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	99.96
KOG2397	480	consensus Protein kinase C substrate, 80 KD protei	99.8
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.96
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.92
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.92
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.91
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.81
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.69
KOG1215	877	consensus Low-density lipoprotein receptors contai	98.06
KOG1215	877	consensus Low-density lipoprotein receptors contai	98.01
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	97.87
KOG3509	964	consensus Basement membrane-specific heparan sulfa	93.94
KOG2397	480	consensus Protein kinase C substrate, 80 KD protei	93.51
KOG1219	4289	consensus Uncharacterized conserved protein, conta	86.06

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=99.96  E-value=2.1e-30  Score=220.99  Aligned_cols=121  Identities=52%  Similarity=0.976  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHhhhcccCccccCCCCCCCCCCC---CceecCCCCce-ecCCCCCCCCCCCCCCCCCCCCCCCCCCeeec
Q 027304            9 LIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSK---EVIKCKDGSKS-FTRDRLNDNFCDCIDGTDEPGTSACPAGKFYC   84 (225)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~Gv~p~~~~~~~p---~~F~C~dGs~C-Ip~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C   84 (225)
                      ++|++++.++++.+  .+.++||+|+.+++|.|   +.|.|.+|++- |+.++++|+++||+|||||++|++|+.+.|||
T Consensus         2 ~~~~~~~~~~~~~~--~~~~~GV~p~~~~~Y~~~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC   79 (176)
T PF12999_consen    2 LLPLIALSLLSASA--SSRIRGVSPSDQHLYEPSENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYC   79 (176)
T ss_pred             cHHHHHHHHHHHhc--cCCCCCCCHHHHHHcCCCCCCceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEee
Confidence            67888777776665  56899999999999986   48999999877 99999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCccCCCCC---CCCCCCCCCCCCCCCCccccCCcchhhc
Q 027304           85 GNVGSTPQFIFSSRVNDRICD---CCDGSDEYDSSIKCPNTCVMGGNIEYKA  133 (225)
Q Consensus        85 ~Ngg~~~~CI~~s~VCDGv~D---C~DGSDE~~~~~~Cpn~C~~~g~~~~~~  133 (225)
                      .|.||.|..|+.++|.||++|   |+|||||  +...|||+|...++.+...
T Consensus        80 ~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE--~~~~C~N~C~e~~~~~~~~  129 (176)
T PF12999_consen   80 ENKGHIPRYIPSSRVNDGICDYDICCDGSDE--SGGKCPNTCAELGKEYREE  129 (176)
T ss_pred             ccCCCCCceeehhhhcCCcCcccccCCCCCC--CCCCCccHHHHHHHHHHHH
Confidence            999999999999999999999   9999999  4568999999999866544

>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]

Probab=99.80  E-value=6.7e-20  Score=175.11  Aligned_cols=104  Identities=54%  Similarity=1.039  Sum_probs=94.3

Q ss_pred             cccCCCCCCCCCC-CCceecCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcccccCCCccCCCCCC
Q 027304           28 LLGVHPLDEKYFS-KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDC  106 (225)
Q Consensus        28 ~~Gv~p~~~~~~~-p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC  106 (225)
                      ..+++..+..+|. +..|.|.+|++-|+.+++.|+++||.|||||+++++||+++|||.|.|+.|..|+.+.|-||++||
T Consensus        28 ~v~~~~~~~~~y~as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDC  107 (480)
T KOG2397|consen   28 GVALSIENLYLYDASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDC  107 (480)
T ss_pred             ccccccccccccccccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCccccc
Confidence            4444455666554 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccccCCcchh
Q 027304          107 CDGSDEYDSSIKCPNTCVMGGNIEY  131 (225)
Q Consensus       107 ~DGSDE~~~~~~Cpn~C~~~g~~~~  131 (225)
                      +|||||..+++.|||+|..+|.++.
T Consensus       108 CDgSDE~~Sgv~c~ntC~e~gR~~r  132 (480)
T KOG2397|consen  108 CDGSDEYLSGVDCPNTCIELGRAAR  132 (480)
T ss_pred             ccCCCCccCCCCCcchHHHHHHHHH
Confidence            9999999999999999999997663

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.96  E-value=5.1e-10  Score=73.49  Aligned_cols=35  Identities=57%  Similarity=0.914  Sum_probs=32.5

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|+.++|+|.++    .||+..++|||+.||.|||||.+
T Consensus         2 ~C~~~~f~C~~~----~CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    2 TCPPGEFRCGNG----QCIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             SSSTTEEEETTS----SEEEGGGTTSSSCSSSSSTTTSS
T ss_pred             cCcCCeeEcCCC----CEEChHHcCCCCCCCCCCccccc
Confidence            588999999998    69999999999999999999963

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.92  E-value=5.4e-10  Score=72.26  Aligned_cols=32  Identities=28%  Similarity=0.577  Sum_probs=29.7

Q ss_pred             CCceecCCCCceecCCCCCCCCCCCCCCCCCCC
Q 027304           41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (225)
Q Consensus        41 p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~   73 (225)
                      +++|+|.++ +||+..++|||+.||+|||||.+
T Consensus         3 ~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           3 PNEFRCANG-RCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CCeEEcCCC-CeeCHHHcCCCccCCCCCccccc
Confidence            478999997 79999999999999999999975

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.92  E-value=5.3e-10  Score=72.29  Aligned_cols=33  Identities=52%  Similarity=0.759  Sum_probs=31.0

Q ss_pred             CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (225)
Q Consensus        77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~  113 (225)
                      |++++|+|.++    .||+..++|||+.||.|||||.
T Consensus         1 C~~~~f~C~~~----~Ci~~~~~CDg~~DC~dgsDE~   33 (35)
T cd00112           1 CPPNEFRCANG----RCIPSSWVCDGEDDCGDGSDEE   33 (35)
T ss_pred             CCCCeEEcCCC----CeeCHHHcCCCccCCCCCcccc
Confidence            67789999997    8999999999999999999997

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.91  E-value=7.4e-10  Score=72.73  Aligned_cols=33  Identities=27%  Similarity=0.629  Sum_probs=30.4

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~   73 (225)
                      .+++|+|.++ .||+..|+|||+.||.|||||.+
T Consensus         4 ~~~~f~C~~~-~CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    4 PPGEFRCGNG-QCIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             STTEEEETTS-SEEEGGGTTSSSCSSSSSTTTSS
T ss_pred             cCCeeEcCCC-CEEChHHcCCCCCCCCCCccccc
Confidence            4689999998 59999999999999999999975

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.81  E-value=2.7e-09  Score=68.02  Aligned_cols=32  Identities=53%  Similarity=0.909  Sum_probs=29.8

Q ss_pred             CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCC
Q 027304           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE  112 (225)
Q Consensus        77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE  112 (225)
                      |+..+|+|.++    .||+..++|||+.||.|||||
T Consensus         2 C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNG----RCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCC----CEECchhhCCCcCcCcCCCCC
Confidence            66779999987    799999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.69  E-value=1.2e-08  Score=65.07  Aligned_cols=29  Identities=31%  Similarity=0.675  Sum_probs=27.3

Q ss_pred             CceecCCCCceecCCCCCCCCCCCCCCCCC
Q 027304           42 EVIKCKDGSKSFTRDRLNDNFCDCIDGTDE   71 (225)
Q Consensus        42 ~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE   71 (225)
                      ++|+|.++ .||+..++|||+.||+|||||
T Consensus         5 ~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        5 GEFQCDNG-RCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence            48999987 699999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=98.06  E-value=3.9e-06  Score=84.94  Aligned_cols=82  Identities=26%  Similarity=0.420  Sum_probs=68.0

Q ss_pred             cccCCCCCCCCCC-----CCceecCCCCceecCCCCCCCCCCCCCCCCCC--CC--CCCCCCeeecCCCCCCcccccCCC
Q 027304           28 LLGVHPLDEKYFS-----KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEP--GT--SACPAGKFYCGNVGSTPQFIFSSR   98 (225)
Q Consensus        28 ~~Gv~p~~~~~~~-----p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~--~c--~~C~~~~F~C~Ngg~~~~CI~~s~   98 (225)
                      ..|.++.....|.     .+.++|.++..||...+.|||..||.|++||.  ++  ..|...++.|.++    .|++..+
T Consensus       202 ~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~----~~~~~~~  277 (877)
T KOG1215|consen  202 ADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADG----DCSDRQK  277 (877)
T ss_pred             ccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCC----CCccceE
Confidence            4455566555542     36789988678999999999999999999994  32  2677889999888    7999999


Q ss_pred             ccCCCCCCCCCCCCC
Q 027304           99 VNDRICDCCDGSDEY  113 (225)
Q Consensus        99 VCDGv~DC~DGSDE~  113 (225)
                      .|||..||+||+||.
T Consensus       278 ~~~g~~d~pdg~de~  292 (877)
T KOG1215|consen  278 LCDGDLDCPDGLDED  292 (877)
T ss_pred             EecCccCCCCccccc
Confidence            999999999999997

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=98.01  E-value=3.6e-06  Score=85.19  Aligned_cols=70  Identities=34%  Similarity=0.576  Sum_probs=56.3

Q ss_pred             CCceecCCC-CceecCCCCCCCCCCCCCCCCCCCCCC------------------------CC-----------------
Q 027304           41 KEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGTSA------------------------CP-----------------   78 (225)
Q Consensus        41 p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c~~------------------------C~-----------------   78 (225)
                      ..+|.|..+ .+|||..|+|||..||.||+||..+..                        |.                 
T Consensus       140 ~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~  219 (877)
T KOG1215|consen  140 LDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDSR  219 (877)
T ss_pred             CCCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCCcc
Confidence            468999932 389999999999999999999987530                        10                 


Q ss_pred             CCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304           79 AGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (225)
Q Consensus        79 ~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~  113 (225)
                      ...++|..++   .||..++.|||..||.|++||.
T Consensus       220 ~~~~~c~g~~---~~i~~~~~~Dg~~dc~~~~de~  251 (877)
T KOG1215|consen  220 IEVTRCDGSS---RCILISEVCDGPRDCVDGPDEG  251 (877)
T ss_pred             eeEEEecCCC---cEEeehhccCCCcccccCCcCc
Confidence            2456666542   7999999999999999999994

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=97.87  E-value=8.1e-06  Score=70.43  Aligned_cols=46  Identities=43%  Similarity=0.733  Sum_probs=35.2

Q ss_pred             CCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCc---cccCC
Q 027304           79 AGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNT---CVMGG  127 (225)
Q Consensus        79 ~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~~~~Cpn~---C~~~g  127 (225)
                      ++.|+|-++..  .-|+.++++|+++||+|||||.. +..|++.   |.+.|
T Consensus        35 ~~~f~Cl~~~~--~~I~~~~iNDdyCDC~DGSDEPG-TsAC~~~~FyC~N~g   83 (176)
T PF12999_consen   35 NGKFTCLDGSK--IVIPFSQINDDYCDCPDGSDEPG-TSACSNGKFYCENKG   83 (176)
T ss_pred             CCceEecCCCC--ceecHHHccCcceeCCCCCCccc-cccCcCceEeeccCC
Confidence            46799998842  34899999999999999999974 3467653   55555

>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.066  Score=56.54  Aligned_cols=71  Identities=25%  Similarity=0.372  Sum_probs=61.9

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCC------CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS------ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~------~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~  113 (225)
                      +|+++.|.++ ++....+.||...+|.+++++.++.      .|.+..+.|.+-   -++.+.+..|||.+||.|+++|.
T Consensus        33 ~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~---~~~~~~~~~~~g~~~~~~~~~~~  108 (964)
T KOG3509|consen   33 SPNEFKCNNP-RCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDR---LRCNPQSFQCDGTNDCKDGSDEV  108 (964)
T ss_pred             CcchhccCCc-cccCchhhhccccccCCCCCcCCccccccccccCCcccccccc---hhcCCccccccCCCCCCccchhc
Confidence            4789999998 7999999999999999999887742      477788999876   37899999999999999999997


Q ss_pred             C
Q 027304          114 D  114 (225)
Q Consensus       114 ~  114 (225)
                      .
T Consensus       109 ~  109 (964)
T KOG3509|consen  109 G  109 (964)
T ss_pred             c
Confidence            5

>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]

Probab=93.51  E-value=0.079  Score=52.15  Aligned_cols=38  Identities=37%  Similarity=0.777  Sum_probs=30.7

Q ss_pred             CCceecCCCC---ceecCCCCCCCCCCCCCCCCCCCCC-CCC
Q 027304           41 KEVIKCKDGS---KSFTRDRLNDNFCDCIDGTDEPGTS-ACP   78 (225)
Q Consensus        41 p~~F~C~dGs---~CIp~s~vCDG~~DC~DGSDE~~c~-~C~   78 (225)
                      .++|+|.+.+   .-|+.+.+.||.+||-|||||..++ .|+
T Consensus        80 ngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~Sgv~c~  121 (480)
T KOG2397|consen   80 NGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLSGVDCP  121 (480)
T ss_pred             CCceeeeecCCCceeeechhccCcccccccCCCCccCCCCCc
Confidence            4689998643   5789999999999999999998753 344

>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]

Probab=86.06  E-value=1.8  Score=50.42  Aligned_cols=29  Identities=17%  Similarity=0.599  Sum_probs=19.4

Q ss_pred             ceeehhhHHHHHHHHHHHHHhhchhhccc
Q 027304          193 VKMVVILQSFVIIFLVFLWIMHHSVRSKR  221 (225)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (225)
                      +-.++|+=.+++|++|+||..|+..+.|.
T Consensus      3995 li~I~V~l~~ifilvvlf~~crKk~~rkk 4023 (4289)
T KOG1219|consen 3995 LIIIIVLLALIFILVVLFWKCRKKNSRKK 4023 (4289)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhccCCc
Confidence            33444556677778888888887666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-06
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	8e-06
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-05
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-04
2xrc_A	565	Human complement factor I; immune system, hydrolas	2e-05
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	1e-04
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	3e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 45.6 bits (107), Expect = 6e-06
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 60  DNFCDCIDGTDEPGTS----ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115
           D   +C DG+DE   +     C +G F CG      + I      D   DC +GSDE   
Sbjct: 44  DGSAECQDGSDESQETCLSVTCKSGDFSCGG--RVNRCIPQFWRCDGQVDCDNGSDEQG- 100

Query: 116 SIKCPNTC 123
              CP   
Sbjct: 101 ---CPPKT 105

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 45  KCKDGSKSFTRDRLNDNFCDCIDGTDEPG--TSACPAGKFYCGNVGSTPQFIFSSRVNDR 102
           +C DG K  +R  + D+  DC+DG+DE       C    F C +       I      D 
Sbjct: 112 RCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS----STCIPQLWACDN 166

Query: 103 ICDCCDGSDEYDSSIKCPNTC 123
             DC DGSDE+    +     
Sbjct: 167 DPDCEDGSDEWPQRCRGLYVF 187

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 55  RDRLNDNFCDCIDGTDEPG--TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 112
           +    D   DC +G+DE G     C   +F C +     + I    V D   DC DGSDE
Sbjct: 82  QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD----GKCISRQFVCDSDRDCLDGSDE 137

Query: 113 YDSSIKCPNTC 123
                 CP   
Sbjct: 138 AS----CPVLT 144

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 60  DNFCDCIDGTDEPG--TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSI 117
           D   DC D +DE     + C   +F C +       I  SR  DR  DC D SDE     
Sbjct: 214 DGGPDCKDKSDEENCAVATCRPDEFQCSDG----NCIHGSRQCDREYDCKDMSDEVG--C 267

Query: 118 KCPNTC 123
                C
Sbjct: 268 VNVTLC 273

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 60  DNFCDCIDGTDE----PGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114
           D   DC D +DE       +  P  +F C N G   + I  +   D   DC D SDE  
Sbjct: 25  DLDDDCGDRSDESASCAYPTCFPLTQFTCNN-G---RCININWRCDNDNDCGDNSDEAG 79

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 45  KCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSA--CPAGKFYCGNVGSTPQFIFSSRVNDR 102
           +C DG K  +R  + D+  DC+DG+DE       C    F C +       I      D 
Sbjct: 94  RCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS----STCIPQLWACDN 148

Query: 103 ICDCCDGSDEYDSSIKCPNTC 123
             DC DGSDE+    +     
Sbjct: 149 DPDCEDGSDEWPQRCRGLYVF 169

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 60  DNFCDCIDGTDEPG----TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115
           D   +C DG+DE      +  C +G F CG      + I      D   DC +GSDE   
Sbjct: 26  DGSAECQDGSDESQETCLSVTCKSGDFSCGG--RVNRCIPQFWRCDGQVDCDNGSDEQG- 82

Query: 116 SIKCPNTC 123
              CP   
Sbjct: 83  ---CPPKT 87

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 60  DNFCDCIDGTDEP--GTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSI 117
           D   DC D +DE     + C   +F C +       I  SR  DR  DC D SDE     
Sbjct: 196 DGGPDCKDKSDEENCAVATCRPDEFQCSDG----NCIHGSRQCDREYDCKDMSDEVG--- 248

Query: 118 KCPNTCVMGGNIEYK 132
            C N  +  G  ++K
Sbjct: 249 -CVNVTLCEGPNKFK 262

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 60  DNFCDCIDGTDEPG--TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSI 117
           D   DC +G+DE G     C   +F C +     + I    V D   DC DGSDE    +
Sbjct: 69  DGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRDCLDGSDEASCPV 124

Query: 118 KC 119
             
Sbjct: 125 LT 126

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 44  IKCKDGSKSFTR----DRLNDNFCDCIDGTDEPGTSACPAG-KFYCGNVGSTPQFIFSSR 98
           + C+    S        R    + D  D       +  P    F C N     ++I   +
Sbjct: 166 VHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVN----GKYISQMK 221

Query: 99  VNDRICDCCDGSDEYD 114
             D I DC D SDE  
Sbjct: 222 ACDGINDCGDQSDELC 237

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 60  DNFCDCIDGTDEPG--TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114
           D+  DC+DG+DE       C    F C +       I      D   DC DGSDE+ 
Sbjct: 23  DSDRDCLDGSDEASCPVLTCGPASFQCNS-S---TCIPQLWACDNDPDCEDGSDEWP 75

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 4/103 (3%)

Query: 26  SSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCG 85
             L+    L   Y +K++   ++     T D                    C   +  C 
Sbjct: 3   QYLVKNQNLHIDYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECR 62

Query: 86  NVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGN 128
                P+ I      D   DC DGSDE      C       G+
Sbjct: 63  G--DVPECIHDLLFCDGEKDCRDGSDE--DPETCSLNITHVGS 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.85
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.84
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.61
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.53
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.52
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.05
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.04
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.03
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.03
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.03
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.02
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.0
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.0
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.99
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.98
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.98
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.98
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	98.98
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.98
1cr8_A	42	Protein (LOW density lipoprotein receptor related	98.98
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.98
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.97
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.95
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.95
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.95
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.94
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.91
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.88
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	98.86
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	98.83
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.83
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.78
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	98.73
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	98.69
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.69
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.59
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.51
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.51
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.28
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.28
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.25
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.15
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.99
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.39
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.32

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.85  E-value=1.3e-21  Score=146.09  Aligned_cols=71  Identities=28%  Similarity=0.398  Sum_probs=64.1

Q ss_pred             CCCCceecCCCCceecCCCCCCCCCCCCCCCCC-CCCC--CCCC-CeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE-PGTS--ACPA-GKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE-~~c~--~C~~-~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      ..+++|+|.+| +|||..|+|||..||.||||| .+|.  .|.+ .+|+|.|+    .||+..|+|||+.||.|||||.+
T Consensus         5 C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g----~CI~~~~~CDG~~DC~DgSDE~~   79 (82)
T 2fyj_A            5 CPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----RCININWRCDNDNDCGDNSDEAG   79 (82)
T ss_dssp             SCTTEEETTSS-CEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTS----CEEETTCBSSSSBCCSSSSSCSC
T ss_pred             CCCCceEeCCC-CEEeccccCCCcccCCCccccccccccccCCCCCceECCCC----CeEcHHHccCCCCcCCCCccccC
Confidence            34689999998 799999999999999999999 6764  6854 99999988    79999999999999999999984

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.84  E-value=7.2e-22  Score=147.32  Aligned_cols=69  Identities=36%  Similarity=0.660  Sum_probs=64.5

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~  113 (225)
                      .+++|+|.+| +||+..|+|||..||.|||||.+|.  .|++.+|+|.++    .||+..|+|||+.||.|||||.
T Consensus         4 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~dgsDE~   74 (80)
T 2fcw_B            4 SQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEW   74 (80)
T ss_dssp             CTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS----CEEEGGGTTSSSCCSTTCGGGC
T ss_pred             CCCccCCCCC-CEEeeecccCCcccCCCcccccccccccCCceeeECCCC----CEEecccccCCCcCCCCCCCcC
Confidence            4689999998 7999999999999999999999874  699999999987    7999999999999999999995

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.62  E-value=5.2e-16  Score=150.23  Aligned_cols=69  Identities=36%  Similarity=0.650  Sum_probs=60.7

Q ss_pred             CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE  112 (225)
Q Consensus        39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE  112 (225)
                      ..+++|+|.+| +||+..|+|||..||.|||||.+|.  .|++.+|+|.++    .||+..|+|||..||.|||||
T Consensus        88 C~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE  158 (699)
T 1n7d_A           88 CSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDE  158 (699)
T ss_dssp             CCSSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSS----CCCCTTSTTCSSCCSSSSSSS
T ss_pred             cccCcEEcCCC-CEecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCC----cccchhcccCCCCcCCCCccc
Confidence            34689999998 7999999999999999999999875  699999999987    799999999999999999999

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.61  E-value=5.3e-16  Score=150.15  Aligned_cols=72  Identities=29%  Similarity=0.481  Sum_probs=60.6

Q ss_pred             CCCCceecCCC-CceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        39 ~~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      ..+++|+|.++ .+|||..|+|||..||.|||||.+|.  .|+.++|+|.++    .||+..|+|||..||.|||||.+
T Consensus        47 C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~Cdg~~dC~dgsDE~~  121 (699)
T 1n7d_A           47 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS  121 (699)
T ss_dssp             CSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSSCCCCSSCCCSSCC--------CCCTTCSSCCSSSSCSSSS
T ss_pred             CCCCccCCCCCCCceeCcceecCCcccCCCCcccCcccccccccCcEEcCCC----CEecHHHcCCCcCcCCCCCccCC
Confidence            34689999986 37999999999999999999999975  699999999988    89999999999999999999985

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.58  E-value=1.5e-16  Score=157.51  Aligned_cols=73  Identities=32%  Similarity=0.577  Sum_probs=0.0

Q ss_pred             CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCC--CC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG--TS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~--c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      ..+++|+|.+| +||+..|+|||..||.|||||.+  |.  .|++++|+|.++.  ..||+..|+|||..||.|||||.+
T Consensus        24 C~~~~f~C~~g-~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~--~~Ci~~~~~CDg~~dC~dgsDE~~  100 (791)
T 3m0c_C           24 CERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV--NRCIPQFWRCDGQVDCDNGSDEQG  100 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcCccCCCCC-CEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCC--CCEeeccccCCCCcCcCCCcccCC
Confidence            45789999998 79999999999999999999987  42  6889999999831  279999999999999999999984

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.53  E-value=6.6e-16  Score=152.96  Aligned_cols=71  Identities=30%  Similarity=0.492  Sum_probs=0.0

Q ss_pred             CCCceecCCC-CceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        40 ~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .+++|+|.++ .+|||..|+|||..||.|||||.+|.  .|+.++|+|.++    .||+..|+|||..||.|||||.+
T Consensus        66 ~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~dC~dgsDE~~  139 (791)
T 3m0c_C           66 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS  139 (791)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CcCccccCCCCCCEeeccccCCCCcCcCCCcccCCccCccccCCeEECCCC----CEECHHHcCCCcccCCCCccccc
Confidence            4678999973 37999999999999999999999975  599999999998    89999999999999999999974

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.52  E-value=7.1e-15  Score=140.05  Aligned_cols=68  Identities=29%  Similarity=0.483  Sum_probs=63.2

Q ss_pred             CceecCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           42 EVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        42 ~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      ++|+|.+| .||+..++|||..||+|||||.+|..|++..|+|.++    .|++..++|||..||.|||||.+
T Consensus       207 ~~~~C~~~-~ci~~~~~Cdg~~dC~d~sDE~~C~~c~~~~~~C~~~----~C~~~~~~cdG~~dC~~gsDE~~  274 (565)
T 2xrc_A          207 DFFQCVNG-KYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSG----VCIPSQYQCNGEVDCITGEDEVG  274 (565)
T ss_dssp             --CBCTTS-CBCCTTSTTSSSCCSSSSSSSSSBSSCSSSCEEETTT----EEECGGGTTSSSCCSSSCTTSSS
T ss_pred             CeeECCCC-CccCHHHcCCCcccCCCCcccccccccCCCceecCCC----cccCccccCCCcccCCCCccccC
Confidence            45999988 7999999999999999999999998899999999988    79999999999999999999975

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.05  E-value=7e-11  Score=76.05  Aligned_cols=34  Identities=41%  Similarity=0.459  Sum_probs=31.8

Q ss_pred             CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      |++.+|+|.++    .||+.+|+|||+.||.|||||.+
T Consensus         2 C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~   35 (37)
T 1ajj_A            2 CSAFEFHCLSG----ECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCTTCEECTTS----CEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCceEcCCC----CeechhhccCCCCCCCCCccccC
Confidence            78899999988    79999999999999999999973

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.05  E-value=9.6e-11  Score=76.28  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=31.3

Q ss_pred             CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      |++.+|+|.++  ...||+.+|+|||..||.|||||.+
T Consensus         1 C~~~~f~C~~~--~g~Cip~~~~CDg~~DC~dgsDE~~   36 (39)
T 3dpr_E            1 CRIHEISCGAH--STQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTTTCCCSSS--SSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred             CCCCceecCCC--CCCEeCccccCCCcccCcCCccccc
Confidence            67889999982  1289999999999999999999973

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.04  E-value=3.3e-11  Score=89.85  Aligned_cols=60  Identities=18%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCC---C---CCCCCCeeecCCCCCCcccccCCCccC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG---T---SACPAGKFYCGNVGSTPQFIFSSRVND  101 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~---c---~~C~~~~F~C~Ngg~~~~CI~~s~VCD  101 (225)
                      .+++|+|.++..|||.+|+|||..||.|||||..   |   ..|.+..|+|.+.-  ..||+..+...
T Consensus        10 ~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~--~~ci~~~~~gL   75 (80)
T 2kny_A           10 GPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEEL--RVRLASHLRKL   75 (80)
T ss_dssp             SSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHH--HHHTTTTTTTT
T ss_pred             CCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHH--HHHHHHHHHHH
Confidence            4689999854489999999999999999999984   3   25777889998820  16888766543

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.03  E-value=1.4e-10  Score=76.55  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|+.++|+|.+.+   .||+..|+|||+.||.|||||.+
T Consensus         3 ~C~~~~F~C~~~g---~CI~~~~~CDg~~DC~DgSDE~~   38 (42)
T 1cr8_A            3 GCHTDEFQCRLDG---LCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             CSSTTCEECTTTC---CEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCCCCceEeCCCC---eEcChhhcCCCCcCCCCCCcccC
Confidence            5889999998632   79999999999999999999973

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.03  E-value=8.7e-11  Score=75.60  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+| +||+..|+|||..||.|||||.+|
T Consensus         3 ~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C   36 (37)
T 1ajj_A            3 SAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCCceEcCCC-CeechhhccCCCCCCCCCccccCC
Confidence            3578999998 799999999999999999999874

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.03  E-value=8.1e-12  Score=108.66  Aligned_cols=51  Identities=25%  Similarity=0.333  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCeeec--CCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           60 DNFCDCIDGTDEPGTSACPAGKFYC--GNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        60 DG~~DC~DGSDE~~c~~C~~~~F~C--~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      -++.||.|+|||.+|..|++++|+|  .||    .|||.+|+|||..||.|||||.+
T Consensus        38 ~~~~~c~d~sDE~~C~~C~~~~F~C~~~~g----~CIp~~~~CDG~~DC~DgSDE~~   90 (215)
T 2gtl_O           38 RKAGSLRHRVEELEDPSCDEHEHQCGGDDP----QCISKLFVCDGHNDCRNGEDEKD   90 (215)
T ss_dssp             HHHHHHHHHHHHHSCCSSCTTEEECCSSSC----CEEEGGGTTSSSCCSSSCHHHHC
T ss_pred             cccccCCcchhhccCCCCCCcceeeCCCCC----cCccccccCCCCCcCCCcccccC
Confidence            3456899999999998899999999  566    89999999999999999999974

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.02  E-value=1.5e-10  Score=76.83  Aligned_cols=35  Identities=29%  Similarity=0.550  Sum_probs=32.6

Q ss_pred             CCCCCeeecCC-CCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGN-VGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~N-gg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|+.++|+|.| +    .||+.+|+|||+.||.|||||.+
T Consensus         6 ~C~~~~f~C~~~g----~CI~~~~~CDg~~DC~DgSDE~~   41 (43)
T 2jm4_A            6 KCSLGYFPCGNIT----KCLPQLLHCNGVDDCGNQADEDN   41 (43)
T ss_dssp             SCCTTEEECSSSS----CEEEGGGTTSSCCCSSSCCTTSS
T ss_pred             CCCCCeeECCCCC----eEcCHhhccCCCCCCCCCcccCC
Confidence            68899999999 5    79999999999999999999974

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.00  E-value=1.9e-10  Score=77.38  Aligned_cols=35  Identities=37%  Similarity=0.585  Sum_probs=33.0

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|+.++|+|.|+    .||+.+|+|||+.||.|||||..
T Consensus         5 ~C~~~~F~C~~g----~CI~~~~~CDG~~DC~DgSDE~~   39 (45)
T 1d2l_A            5 QCQPGEFACANS----RCIQERWKCDGDNDCLDNSDEAP   39 (45)
T ss_dssp             BTTBTCEEETTT----EEECGGGTTTSSCTTTTCSTTST
T ss_pred             cCCCCceEcCCC----CeEehhhccCCCCCCCCCCCCCC
Confidence            588899999998    89999999999999999999985

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.00  E-value=2.7e-10  Score=76.71  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=31.5

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+| +||+..|+|||..||.|||||.++
T Consensus         7 ~~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            7 QPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             TBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CCCceEcCCC-CeEehhhccCCCCCCCCCCCCCCC
Confidence            4679999998 799999999999999999999885

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.99  E-value=1.8e-10  Score=79.15  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=33.8

Q ss_pred             CCCceecC-CCCceecCCCCCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACP   78 (225)
Q Consensus        40 ~p~~F~C~-dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~   78 (225)
                      .+++|+|. +| +||+..|+|||..||.|||||.++..|+
T Consensus         8 ~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~~C~~C~   46 (50)
T 2knx_A            8 GPSSFSCPGTH-VCVPERWLCDGDKDCADGADESIAAGCL   46 (50)
T ss_dssp             CTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGSGGGTCC
T ss_pred             CCCcEEcCCCC-eEcChhhcCCCCCCCCCCCccccccCCC
Confidence            46899996 66 8999999999999999999999876675

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.98  E-value=2.4e-10  Score=76.20  Aligned_cols=35  Identities=40%  Similarity=0.526  Sum_probs=32.2

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|+..+|+|.|+    .||+..|+|||+.||.|||||.+
T Consensus         7 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgSDE~~   41 (44)
T 3a7q_B            7 ECEKDQFQCRNE----RCIPSVWRCDEDDDCLDHSDEDD   41 (44)
T ss_dssp             -CCTTEEECTTS----CEEEGGGTTSSSCCSSSSTTTSC
T ss_pred             CCCCCceEcCCC----CEeChhhccCCCCCCCCCccccC
Confidence            588999999997    89999999999999999999973

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.98  E-value=1.1e-10  Score=81.39  Aligned_cols=35  Identities=40%  Similarity=0.630  Sum_probs=33.1

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|+.++|+|.||    .||+..|+|||..||.|||||.+
T Consensus         6 ~C~~~~F~C~nG----~CIp~~~~CDG~~DC~DgSDE~~   40 (52)
T 2m0p_A            6 SCLDTQYTCDNH----QCISKNWVCDTDNDCGDGSDEKN   40 (52)
T ss_dssp             SSCSSEEECTTC----CEEETTSTTSSSCSSSSCHHHHS
T ss_pred             CCCCCceECCCC----CEEecCccCCCCCCCCCCCcccc
Confidence            699999999998    79999999999999999999985

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.98  E-value=2e-10  Score=76.60  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=33.3

Q ss_pred             CCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           75 SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        75 ~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      ..|++.+|+|.|+    .||+..|+|||+.||.|||||..
T Consensus         3 ~~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~   38 (44)
T 1j8e_A            3 HSCSSTQFKCNSG----RCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSSCTTEEECTTS----CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCCCCCceEeCCC----CeEecCcccCCCCCCCCCCCCCC
Confidence            3689999999998    79999999999999999999974

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=98.98  E-value=2.4e-10  Score=75.82  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=31.2

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.++.+|||..|+|||..||.|||||.+|
T Consensus         8 ~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C   42 (43)
T 2jm4_A            8 SLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC   42 (43)
T ss_dssp             CTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred             CCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence            46899999933799999999999999999999874

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.98  E-value=2.3e-10  Score=76.95  Aligned_cols=40  Identities=35%  Similarity=0.692  Sum_probs=32.8

Q ss_pred             CCCCCCCeeecCCC-CCCcccccCCCccCCCCCCCCCCCCC
Q 027304           74 TSACPAGKFYCGNV-GSTPQFIFSSRVNDRICDCCDGSDEY  113 (225)
Q Consensus        74 c~~C~~~~F~C~Ng-g~~~~CI~~s~VCDGv~DC~DGSDE~  113 (225)
                      +..|++++|+|.++ ++.+.||+.+|+|||+.||.|||||.
T Consensus         2 ~~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~   42 (47)
T 1jrf_A            2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEW   42 (47)
T ss_dssp             CCCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTH
T ss_pred             CCCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccc
Confidence            34699999999841 01128999999999999999999997

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.98  E-value=2.7e-10  Score=75.26  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=30.7

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+..+||+..|+|||..||.|||||.+|
T Consensus         5 ~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C   39 (42)
T 1cr8_A            5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC   39 (42)
T ss_dssp             STTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred             CCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCC
Confidence            46799998633799999999999999999999874

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.98  E-value=2.4e-10  Score=74.34  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             CCceecCC-CCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           41 KEVIKCKD-GSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        41 p~~F~C~d-Gs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      +++|+|.+ ..+|||.+|+|||..||.|||||.+|
T Consensus         3 ~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C   37 (39)
T 3dpr_E            3 IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC   37 (39)
T ss_dssp             TTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred             CCceecCCCCCCEeCccccCCCcccCcCCcccccC
Confidence            57899998 23899999999999999999999874

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.97  E-value=2.6e-10  Score=76.00  Aligned_cols=34  Identities=24%  Similarity=0.460  Sum_probs=31.2

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+| +||+..|+|||..||.|||||.+|
T Consensus         9 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C   42 (44)
T 3a7q_B            9 EKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDC   42 (44)
T ss_dssp             CTTEEECTTS-CEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred             CCCceEcCCC-CEeChhhccCCCCCCCCCccccCC
Confidence            4679999998 799999999999999999999874

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.95  E-value=1.2e-10  Score=78.87  Aligned_cols=36  Identities=33%  Similarity=0.598  Sum_probs=32.5

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS   75 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~   75 (225)
                      .+++|+|.+|.+||+..|+|||..||.|||||.+|.
T Consensus         8 ~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~   43 (48)
T 2i1p_A            8 TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP   43 (48)
T ss_dssp             CSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred             CCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence            468999999867999999999999999999998753

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.95  E-value=2.6e-10  Score=76.80  Aligned_cols=35  Identities=34%  Similarity=0.706  Sum_probs=31.9

Q ss_pred             CCCCCeeecC-----CCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCG-----NVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~-----Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|+|.     ++    .||+.+|+|||+.||.|||||.+
T Consensus         6 ~C~~~~F~C~~~~~~~g----~CIp~~~~CDG~~DC~DgSDE~~   45 (47)
T 1k7b_A            6 SCPPGQFRCSEPPGAHG----ECYPQDWLCDGHPDCDDGRDEWG   45 (47)
T ss_dssp             CCSTTEECCSSCTTSCC----CCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCCCceEcCCCCCCCC----cCCCccccCCCcCCCCCCcccCC
Confidence            5889999998     44    79999999999999999999973

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.95  E-value=1.6e-10  Score=80.45  Aligned_cols=35  Identities=23%  Similarity=0.445  Sum_probs=31.7

Q ss_pred             CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      ..+++|+|.+| +||+..|+|||..||.|||||.++
T Consensus         7 C~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~~   41 (52)
T 2m0p_A            7 CLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKNC   41 (52)
T ss_dssp             SCSSEEECTTC-CEEETTSTTSSSCSSSSCHHHHSC
T ss_pred             CCCCceECCCC-CEEecCccCCCCCCCCCCCccccc
Confidence            35689999998 799999999999999999999874

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.94  E-value=2.2e-10  Score=77.14  Aligned_cols=34  Identities=35%  Similarity=0.666  Sum_probs=30.4

Q ss_pred             CCCceecC-----CCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCK-----DGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~-----dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.     ++ +|||.+|+|||..||.|||||.+|
T Consensus         8 ~~~~F~C~~~~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C   46 (47)
T 1k7b_A            8 PPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEWGC   46 (47)
T ss_dssp             STTEECCSSCTTSCC-CCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CCCceEcCCCCCCCC-cCCCccccCCCcCCCCCCcccCCC
Confidence            46899998     45 899999999999999999999874

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.91  E-value=4.9e-10  Score=76.94  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=32.3

Q ss_pred             CCCCCeeecC-CCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~-Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++.+|+|. ++    .||+..|+|||+.||.|||||..
T Consensus         6 ~C~~~~F~C~~~g----~CI~~~~~CDG~~DC~DgSDE~~   41 (50)
T 2knx_A            6 TCGPSSFSCPGTH----VCVPERWLCDGDKDCADGADESI   41 (50)
T ss_dssp             TTCTTEEEETTTT----EEEETTTTTSSSCCSTTCGGGSG
T ss_pred             CCCCCcEEcCCCC----eEcChhhcCCCCCCCCCCCcccc
Confidence            5999999996 66    89999999999999999999985

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.88  E-value=3.6e-10  Score=76.55  Aligned_cols=36  Identities=33%  Similarity=0.566  Sum_probs=32.8

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++.+|+|.|++   .||+.+|+|||+.||.|||||.+
T Consensus         6 ~C~~~~F~C~~g~---~CI~~~~~CDG~~DC~DgSDE~~   41 (48)
T 2i1p_A            6 NCTSAQFKCADGS---SCINSRYRCDGVYDCRDNSDEAG   41 (48)
T ss_dssp             CCCSSSEECSSSS---CEECGGGSSSSSCCSSSSHHHHS
T ss_pred             CCCCCeeECCCCC---EeCCHhhcCCCCCCCCCCccccc
Confidence            5888999999973   69999999999999999999984

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=98.86  E-value=6.9e-10  Score=82.69  Aligned_cols=47  Identities=26%  Similarity=0.393  Sum_probs=38.3

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCC--CccccC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP--NTCVMG  126 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~~~~Cp--n~C~~~  126 (225)
                      .|++++|+|.+.+   .|||.+|+|||+.||.|||||... ..|+  ++|...
T Consensus         8 ~C~~~~f~C~~~g---~CIp~~~~CDg~~DC~DgsDE~~~-~~C~~~~~C~~~   56 (80)
T 2kny_A            8 TCGPSSFSCPGTH---VCVPERWLCDGDKDCADGADESIA-AGCLYNSTGSGS   56 (80)
T ss_dssp             CCSSSEEECTTSS---CEEEHHHHTTSSCCSSSSTTTSGG-GTCSSSSTTTTC
T ss_pred             CCCCCceecCCCC---eEcChhhcCCCCCCCCCCCccccc-cCCCCCcccCcc
Confidence            5899999998543   799999999999999999999742 2576  567644

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=98.83  E-value=2.8e-09  Score=79.13  Aligned_cols=50  Identities=32%  Similarity=0.544  Sum_probs=38.7

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCC-CccccCCcchhhcc
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP-NTCVMGGNIEYKAQ  134 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~~~~Cp-n~C~~~g~~~~~~~  134 (225)
                      .|++++|+|.+|    .||+.+|+|||+.||.|||||..   .|+ .+|...+  +|.++
T Consensus         4 ~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~---~C~~~~C~~~~--~f~C~   54 (82)
T 2fyj_A            4 TCPPNQFSCASG----RCIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLT--QFTCN   54 (82)
T ss_dssp             SSCTTEEETTSS----CEEETTSSSSCSSSSCSTTTTTS---SCCCSSSCSSS--EEECT
T ss_pred             CCCCCceEeCCC----CEEeccccCCCcccCCCcccccc---ccccccCCCCC--ceECC
Confidence            588999999997    79999999999999999999931   365 2454333  34443

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.83  E-value=4.4e-10  Score=75.55  Aligned_cols=35  Identities=31%  Similarity=0.597  Sum_probs=30.2

Q ss_pred             CCCceecCC----CCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKD----GSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~d----Gs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+    ..+|||..|+|||..||.|||||.+|
T Consensus         6 ~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C   44 (47)
T 1jrf_A            6 PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   44 (47)
T ss_dssp             CCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred             CCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccC
Confidence            467999984    23799999999999999999999763

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.78  E-value=2.2e-09  Score=71.45  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=30.6

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~   73 (225)
                      .+++|+|.+| +|||..|+|||..||.|||||.+
T Consensus         6 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~   38 (44)
T 1j8e_A            6 SSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             CTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCCceEeCCC-CeEecCcccCCCCCCCCCCCCCC
Confidence            4679999998 79999999999999999999976

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.73  E-value=1.2e-09  Score=94.95  Aligned_cols=46  Identities=22%  Similarity=0.380  Sum_probs=39.7

Q ss_pred             CCCCCceec--CCCCceecCCCCCCCCCCCCCCCCCCCCC--CCCCCeeec
Q 027304           38 YFSKEVIKC--KDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYC   84 (225)
Q Consensus        38 ~~~p~~F~C--~dGs~CIp~s~vCDG~~DC~DGSDE~~c~--~C~~~~F~C   84 (225)
                      ...+++|+|  .+| +|||.+|+|||..||.|||||.+|.  .|++.+|.|
T Consensus        54 ~C~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c  103 (215)
T 2gtl_O           54 SCDEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG  103 (215)
T ss_dssp             SSCTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEE
T ss_pred             CCCCcceeeCCCCC-cCccccccCCCCCcCCCcccccCCCCCCcCCCceee
Confidence            345789999  566 7999999999999999999998875  588888887

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=98.69  E-value=7.6e-09  Score=76.76  Aligned_cols=35  Identities=37%  Similarity=0.589  Sum_probs=32.7

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|+|.|+    .||+..|+|||+.||.|||||.+
T Consensus         2 ~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~   36 (80)
T 2fcw_B            2 TCSQAEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS   36 (80)
T ss_dssp             CCCTTEEECTTS----CEEEGGGTTSSSCCSTTCTTTTT
T ss_pred             CCCCCccCCCCC----CEEeeecccCCcccCCCcccccc
Confidence            488999999997    79999999999999999999984

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.69  E-value=2.9e-09  Score=92.74  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=44.0

Q ss_pred             CCCCceecCC-CCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKD-GSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        39 ~~p~~F~C~d-Gs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      ..+++|+|.+ .+.|||..|+|||..||+|||||... .|+.....|.+     .++-.    ....+|.+++||..
T Consensus        54 C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~-~C~~~~~~~~~-----~~~g~----~~~~~C~~~~pe~~  120 (217)
T 2gtl_M           54 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE-TCSLNITHVGS-----SYTGL----ATWTSCEDLNPDHA  120 (217)
T ss_dssp             CCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHH-HHCCGGGCTTC-----EEEEE----EEESSSCSCCSEEE
T ss_pred             CCCCceecCCCCCcEechhhccCCCCCCCCCCccccC-cCCCCcccCCc-----ccccc----cCcccCCCCCCCee
Confidence            4578999975 23799999999999999999999721 14322222322     12211    33458889998864

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.59  E-value=1.4e-08  Score=96.78  Aligned_cols=66  Identities=24%  Similarity=0.266  Sum_probs=48.8

Q ss_pred             CCceecCCCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 027304           41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS  115 (225)
Q Consensus        41 p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~  115 (225)
                      +..+.|..+ .+++..+.||+..+|.+.+++.    |...+|+|.|+    .||+..++|||+.||.|||||.++
T Consensus       173 ~sl~~C~~~-~~~~~~h~~DagV~C~~~~~~c----~~~~~~~C~~~----~ci~~~~~Cdg~~dC~d~sDE~~C  238 (565)
T 2xrc_A          173 TSLAECTFT-KRRTMGYQDFADVVCYTQKADS----PMDDFFQCVNG----KYISQMKACDGINDCGDQSDELCC  238 (565)
T ss_dssp             SCGGGSEEE-CCCCCSSCCCCEEEBCCC-------------CBCTTS----CBCCTTSTTSSSCCSSSSSSSSSB
T ss_pred             CchhhcccC-cccccccccCCceeccccccCC----CCcCeeECCCC----CccCHHHcCCCcccCCCCcccccc
Confidence            445667655 3777788999999999876551    33566999988    799999999999999999999863

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.51  E-value=3.8e-08  Score=85.99  Aligned_cols=48  Identities=15%  Similarity=0.165  Sum_probs=36.6

Q ss_pred             CCCceecC-CCCceecCCCCCCCCCCCCCCCCCC--CCC---CCCCC--eeecCCC
Q 027304           40 SKEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEP--GTS---ACPAG--KFYCGNV   87 (225)
Q Consensus        40 ~p~~F~C~-dGs~CIp~s~vCDG~~DC~DGSDE~--~c~---~C~~~--~F~C~Ng   87 (225)
                      .+++|+|. +.++|||..|+|||..||+|||||.  +|.   .|.+.  ++.|.++
T Consensus        54 ~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d  109 (220)
T 2gtl_N           54 EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWH  109 (220)
T ss_dssp             CTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEEC
T ss_pred             CCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCC
Confidence            46799996 2337999999999999999999996  542   45443  4567666

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.51  E-value=4.1e-08  Score=85.51  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             CCCCCCeeecCC--CCCCcccccCCCccCCCCCCCCCCCCC
Q 027304           75 SACPAGKFYCGN--VGSTPQFIFSSRVNDRICDCCDGSDEY  113 (225)
Q Consensus        75 ~~C~~~~F~C~N--gg~~~~CI~~s~VCDGv~DC~DGSDE~  113 (225)
                      ..|++++|+|.|  |    .||+.+|+|||..||.|||||.
T Consensus        52 ~~C~~~~F~C~~~~g----~CI~~~~~CDG~~DC~DgSDE~   88 (217)
T 2gtl_M           52 HHCDEHESECRGDVP----ECIHDLLFCDGEKDCRDGSDED   88 (217)
T ss_dssp             CCCCTTEEECSSSSC----CEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCCceecCCCCC----cEechhhccCCCCCCCCCCccc
Confidence            369999999975  5    7999999999999999999997

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.28  E-value=3.5e-07  Score=87.56  Aligned_cols=46  Identities=26%  Similarity=0.384  Sum_probs=38.8

Q ss_pred             CceecC-CCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccccc
Q 027304           42 EVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIF   95 (225)
Q Consensus        42 ~~F~C~-dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ngg~~~~CI~   95 (225)
                      ++|+|. +| +||+..|+|||..||.|||||.+   |+.....|..+    .+++
T Consensus        69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~---c~~~~~~C~~~----~~~~  115 (537)
T 3ojy_B           69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEAN---CRRIYKKCQHE----MDQY  115 (537)
T ss_dssp             SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSS---CSSCSSCCSSC----CBCC
T ss_pred             CccCcCCCC-cEeeccccCCCCCCCCCcccccc---CCCCCCccccC----cCCC
Confidence            689999 77 79999999999999999999987   55556778765    4665

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.28  E-value=3.5e-07  Score=79.89  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=30.9

Q ss_pred             CCCCCeeecC--CCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCG--NVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (225)
Q Consensus        76 ~C~~~~F~C~--Ngg~~~~CI~~s~VCDGv~DC~DGSDE~  113 (225)
                      .|+..+|+|.  +|    .||+..|+|||..||.|||||.
T Consensus        52 ~C~~~eFqC~~~~g----~CIp~~wvCDG~~DC~DGSDE~   87 (220)
T 2gtl_N           52 HCEKRTFQCGGNEQ----ECISDLLVCDGHKDCHNAHDED   87 (220)
T ss_dssp             SSCTTEEECCSSSC----CEEETTTTTSSSCCSTTCTTSC
T ss_pred             CCCCCccCcCCCCC----cEeCcceecCCCCCCCCCCccC
Confidence            5889999996  34    7999999999999999999996

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.25  E-value=4.9e-07  Score=87.13  Aligned_cols=45  Identities=27%  Similarity=0.499  Sum_probs=36.2

Q ss_pred             CceecC-CCCceecCCCCCCCCCCCCCCCCCCCCCCCCCCeeecCCC
Q 027304           42 EVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNV   87 (225)
Q Consensus        42 ~~F~C~-dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~~~~F~C~Ng   87 (225)
                      ++|+|. +| +||+..|+|||..||.|||||.+|..++...+.|...
T Consensus        68 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~~~~~~~~~C~~~  113 (554)
T 3ojy_A           68 QDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQY  113 (554)
T ss_dssp             SSEECSSSC-CEECGGGTTSSSCCSSSCTTSSSCCSCCCCCTTTTTS
T ss_pred             CcCccCCCC-EEcccccccCCcccCCCccccccCCCCCCCccccccc
Confidence            699999 77 7999999999999999999999864433234567543

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.15  E-value=1.5e-06  Score=83.32  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             CeeecC-CCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 027304           80 GKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYDS  115 (225)
Q Consensus        80 ~~F~C~-Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~  115 (225)
                      .+|+|. ||    +||+..|+|||..||.|||||.++
T Consensus        69 ~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sdE~~c  101 (537)
T 3ojy_B           69 EGFVCAQTG----RCVNRRLLCNGDNDCGDQSDEANC  101 (537)
T ss_dssp             SSEECTTTC----CEECGGGTTSSSCCSSSSCTTSSC
T ss_pred             CccCcCCCC----cEeeccccCCCCCCCCCccccccC
Confidence            799999 87    899999999999999999999863

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.99  E-value=3.9e-06  Score=80.85  Aligned_cols=34  Identities=35%  Similarity=0.540  Sum_probs=30.6

Q ss_pred             CCCCeeecC-CCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 027304           77 CPAGKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYDS  115 (225)
Q Consensus        77 C~~~~F~C~-Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~  115 (225)
                      |+ ++|+|. ||    +||+..|+|||..||.|||||.++
T Consensus        66 c~-~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sDE~~C  100 (554)
T 3ojy_A           66 CG-QDFQCKETG----RCLKRHLVCNGDQDCLDGSDEDDC  100 (554)
T ss_dssp             CS-SSEECSSSC----CEECGGGTTSSSCCSSSCTTSSSC
T ss_pred             CC-CcCccCCCC----EEcccccccCCcccCCCccccccC
Confidence            53 799999 77    899999999999999999999863

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.39  E-value=9.8e-05  Score=74.39  Aligned_cols=31  Identities=35%  Similarity=0.472  Sum_probs=29.1

Q ss_pred             CeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           80 GKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        80 ~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      ..|+|.+|    +||+..|+|||..||.|+|||.+
T Consensus       121 ~~F~C~~g----~ci~~~~~c~g~~dC~d~sde~~  151 (913)
T 3t5o_A          121 NKFRCDSG----RCIARKLECNGENDCGDNSDERD  151 (913)
T ss_dssp             SEEECTTS----CEEEGGGSSSSSCCSSSSGGGTT
T ss_pred             cccccCCC----ceEccceecCCcccCCCcccccc
Confidence            67999987    89999999999999999999975

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.32  E-value=7.6e-05  Score=75.16  Aligned_cols=32  Identities=25%  Similarity=0.491  Sum_probs=30.0

Q ss_pred             CceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           42 EVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        42 ~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      +.|+|.+| .||+..|+|||..||.|+|||.+|
T Consensus       121 ~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~~C  152 (913)
T 3t5o_A          121 NKFRCDSG-RCIARKLECNGENDCGDNSDERDC  152 (913)
T ss_dssp             SEEECTTS-CEEEGGGSSSSSCCSSSSGGGTTC
T ss_pred             cccccCCC-ceEccceecCCcccCCCccccccC
Confidence            68999998 799999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-06
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	7e-04
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	0.001
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	0.001
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	0.002
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	0.002
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	0.003
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	0.004
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	0.004

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 3e-06
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 73  GTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPN 121
           G+ +C + +F C +     + I      D   DC D SDE  +   C N
Sbjct: 1   GSHSCSSTQFKCNS----GRCIPEHWTCDGDNDCGDYSDETHA--NCTN 43

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 34.1 bits (78), Expect = 7e-04
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 77  CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 112
           C    F CG   +  + I    V D   DC +  DE
Sbjct: 2   CEKRTFQCGG--NEQECISDLLVCDGHKDCHNAHDE 35

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 77  CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 112
           C  G+F C N     + I      D   DC D SDE
Sbjct: 6   CQPGEFACAN----SRCIQERWKCDGDNDCLDNSDE 37

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 77  CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 112
           C   +  C      P+ I      D   DC DGSDE
Sbjct: 3   CDEHESECRG--DVPECIHDLLFCDGEKDCRDGSDE 36

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 77  CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114
           C   +  CG    + Q I  S   D   DC  G DE +
Sbjct: 1   CRIHEISCGA--HSTQCIPVSWRCDGENDCDSGEDEEN 36

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 75  SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114
           + C   +F C +       I  SR  DR  DC D SDE  
Sbjct: 1   ATCRPDEFQCSD----GNCIHGSRQCDREYDCKDMSDEVG 36

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 32.6 bits (74), Expect = 0.003
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 76  ACPAGKFYCGN-VGSTPQFIFSSRVNDRICDCCDGSDEYD 114
           +CP G+F C    G+  +      + D   DC DG DE+ 
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 40

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 32.1 bits (73), Expect = 0.004
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 77  CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSI 117
           C   +  CG     PQ I    V D   DC +G DE D ++
Sbjct: 3   CDEHEHQCGG--DDPQCISKLFVCDGHNDCRNGEDEKDCTL 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (73), Expect = 0.004
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 74  TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114
           +  C +G F CG      + I      D   DC +GSDE  
Sbjct: 2   SVTCKSGDFSCGG--RVNRCIPQFWRCDGQVDCDNGSDEQG 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.09
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.09
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.06
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.05
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.03
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.03
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.03
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.02
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.02
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.01
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.01
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.0
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.0
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	98.99
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	98.99
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	98.99
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	98.98
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.97
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	98.95
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.94
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.93
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.92
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.9
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	98.9
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.89
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	98.89
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	98.89
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.87
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.83
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	98.78

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.3e-11  Score=79.70  Aligned_cols=35  Identities=37%  Similarity=0.589  Sum_probs=32.6

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|+.++|+|.+|    .||+.+|+|||..||.|||||.+
T Consensus         2 tC~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb1           2 TCSQAEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS   36 (39)
T ss_dssp             CCCTTEEECTTS----CEEEGGGTTSSSCCSTTCTTTTT
T ss_pred             cCCCCCEEcCCC----CEEcchhcCcCcCcCcCCchhcC
Confidence            488999999988    79999999999999999999973

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.5e-11  Score=78.45  Aligned_cols=35  Identities=40%  Similarity=0.638  Sum_probs=32.9

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|.|.++    .||+.+++|||..||.|||||.+
T Consensus         2 sC~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1f8za_           2 TCRPDEFQCSDG----NCIHGSRQCDREYDCKDMSDEVG   36 (39)
T ss_dssp             CCCTTEEECSSS----CEEETTTSSSCCCCSTTSGGGSS
T ss_pred             CCCCCceEeCCC----CeEChhhcCCCCCcCCCCchhcc
Confidence            599999999998    79999999999999999999973

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.3e-11  Score=77.71  Aligned_cols=34  Identities=38%  Similarity=0.748  Sum_probs=31.2

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+| +||+.+|+|||+.||.|||||.+|
T Consensus         4 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d2fcwb1           4 SQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASC   37 (39)
T ss_dssp             CTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTH
T ss_pred             CCCCEEcCCC-CEEcchhcCcCcCcCcCCchhcCC
Confidence            4689999988 799999999999999999999874

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.8e-11  Score=77.40  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+| +||+..|+|||..||.|||||.+|
T Consensus         3 ~~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~~C   36 (37)
T d1ajja_           3 SAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCCceEcCCC-CEECchhcCCCCCcCCCCchhhcc
Confidence            3579999998 799999999999999999999875

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.3e-11  Score=76.93  Aligned_cols=34  Identities=32%  Similarity=0.567  Sum_probs=31.5

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+| +||+.+|+|||..||.|||||.+|
T Consensus         4 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d1f8za_           4 RPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGC   37 (39)
T ss_dssp             CTTEEECSSS-CEEETTTSSSCCCCSTTSGGGSSS
T ss_pred             CCCceEeCCC-CeEChhhcCCCCCcCCCCchhccC
Confidence            5789999998 799999999999999999999874

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.7e-11  Score=78.19  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             CCCceecCCC-CceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+| .+|||..|+|||+.||+|||||.+|
T Consensus         2 ~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d1v9u5_           2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC   37 (39)
T ss_dssp             CTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSC
T ss_pred             CCCceECCCCCCCeeechhcCcCcccCCCCchhccC
Confidence            3679999976 3799999999999999999999874

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.4e-11  Score=77.18  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=30.8

Q ss_pred             CCCceecCCC-CceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.++ .+|||.+|+|||..||.|||||.+|
T Consensus         6 ~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           6 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             CSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             CCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            4789999754 3799999999999999999999874

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.1e-11  Score=76.81  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      |++++|+|.++.  .+||+.+|+|||+.||.|||||.+
T Consensus         1 C~~~~f~C~~g~--~~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1v9u5_           1 CRIHEISCGAHS--TQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTTSCCCSSSS--SCCCCGGGSSSSSCCSTTSGGGSS
T ss_pred             CCCCceECCCCC--CCeeechhcCcCcccCCCCchhcc
Confidence            778999998762  369999999999999999999984

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=9.7e-11  Score=76.59  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=31.9

Q ss_pred             CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      ..+++|+|.++.+||+.+|+|||..||+|||||.+|
T Consensus         4 C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C   39 (42)
T d1cr8a_           4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC   39 (42)
T ss_dssp             SSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred             CCCCceEcCCCCEEccchhcCCCcCcCCCcchhccC
Confidence            356899997656899999999999999999999874

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.4e-11  Score=77.46  Aligned_cols=35  Identities=34%  Similarity=0.583  Sum_probs=33.1

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|+|.|+    +||+.+++|||+.||.|||||.+
T Consensus         7 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   41 (44)
T d1f5ya1           7 RCERNEFQCQDG----KCISYKWVCDGSAECQDGSDESQ   41 (44)
T ss_dssp             CCCSSSEECSSS----CEECTTTTTSSSCSSSSSGGGTT
T ss_pred             ccCCCCeEcCCC----CeEChhHcCCCcCcCCCCCcCCC
Confidence            599999999998    79999999999999999999985

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.9e-11  Score=75.84  Aligned_cols=35  Identities=40%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|+|.++    .||+.+++|||+.||.|||||.+
T Consensus         1 PC~~~~f~C~~g----~Ci~~~~~CDg~~DC~dgsDE~~   35 (37)
T d1ajja_           1 PCSAFEFHCLSG----ECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCCTTCEECTTS----CEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCCceEcCCC----CEECchhcCCCCCcCCCCchhhc
Confidence            388999999988    79999999999999999999974

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8.2e-11  Score=78.03  Aligned_cols=36  Identities=36%  Similarity=0.579  Sum_probs=33.4

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS  115 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~~  115 (225)
                      .|+.++|+|.|+    .||+.+++|||+.||.|||||...
T Consensus         5 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           5 QCQPGEFACANS----RCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             BTTBTCEEETTT----EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCCCCeEcCCC----CeEChhhhCcCcCcCCCCCCCCcC
Confidence            589999999998    899999999999999999999853

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=76.71  Aligned_cols=35  Identities=29%  Similarity=0.632  Sum_probs=31.8

Q ss_pred             CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      ..+++|+|.+| +|||.+|+|||..||.|||||.++
T Consensus         8 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~c   42 (44)
T d1f5ya1           8 CERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQE   42 (44)
T ss_dssp             CCSSSEECSSS-CEECTTTTTSSSCSSSSSGGGTTS
T ss_pred             cCCCCeEcCCC-CeEChhHcCCCcCcCCCCCcCCCC
Confidence            35689999998 799999999999999999999874

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.6e-11  Score=76.41  Aligned_cols=35  Identities=34%  Similarity=0.564  Sum_probs=32.6

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|+|.+|    .||+..|+|||+.||.|||||..
T Consensus         2 tC~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           2 TCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             HCCTTEEECTTS----CEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             ccCCCceEcCCC----CeEChhhcCCCCCCCCCCCcCCC
Confidence            488999999998    79999999999999999999974

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.1e-11  Score=77.53  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=33.5

Q ss_pred             CCCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           75 SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        75 ~~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      ..|++++|+|.++    .||+.+++|||+.||.|||||.+
T Consensus         3 ~~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   38 (44)
T d1j8ea_           3 HSCSSTQFKCNSG----RCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSSCTTEEECTTS----CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             ccCCCCcEEcCCC----CEEChhhcCcCcccCCCCCcCCC
Confidence            3699999999998    79999999999999999999985

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-10  Score=76.05  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=32.3

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|+|.++.  ..||+.+|+|||+.||.|||||.+
T Consensus         4 ~C~~~~f~C~~~~--~~CI~~~~~CDg~~DC~DgsDE~~   40 (41)
T d1f5ya2           4 TCKSGDFSCGGRV--NRCIPQFWRCDGQVDCDNGSDEQG   40 (41)
T ss_dssp             TCCSSCEECCSSC--CCEECGGGTTCSCCCSSSCTTTTT
T ss_pred             ccCCCceECCCCC--CCCccchhcCCCcCcCcCcccccC
Confidence            5999999997541  279999999999999999999974

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.4e-10  Score=75.77  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|+|.+++   +||+.+|+|||..||.|||||.+
T Consensus         3 ~C~~~~f~C~~~~---~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d1cr8a_           3 GCHTDEFQCRLDG---LCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             CSSTTCEECTTTC---CEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCCCCceEcCCCC---EEccchhcCCCcCcCCCcchhcc
Confidence            5999999997653   89999999999999999999974

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.97  E-value=1.1e-10  Score=76.38  Aligned_cols=36  Identities=33%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~  113 (225)
                      .|++++|+|.++.  +.||+.+|+|||+.||.|||||.
T Consensus         2 ~C~~~~f~C~~~~--~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           2 HCDEHESECRGDV--PECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCCTTEEECSSSS--CCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCeeECCCCC--CCEechhhcCCCCccCCCCCcCC
Confidence            3889999998641  27999999999999999999995

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.5e-10  Score=75.62  Aligned_cols=37  Identities=22%  Similarity=0.459  Sum_probs=32.7

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACP   78 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c~~C~   78 (225)
                      .+++|+|.+| +||+.+++|||..||.|||||..+ .|.
T Consensus         7 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~~-~C~   43 (45)
T d1d2la_           7 QPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA-LCH   43 (45)
T ss_dssp             TBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT-TCC
T ss_pred             CCCCeEcCCC-CeEChhhhCcCcCcCCCCCCCCcC-cCc
Confidence            4679999998 799999999999999999999874 453

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.94  E-value=2.4e-10  Score=74.48  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=31.4

Q ss_pred             CCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        77 C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      |++++|+|.+.  .+.||+.+|+|||+.||.|||||..
T Consensus         2 C~~~~f~C~~~--~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           2 CEKRTFQCGGN--EQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SCTTEEECCSS--SCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCCeeECCCc--CCCeechHHcCCCCccCCCCCcccc
Confidence            88999999753  1279999999999999999999963

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.3e-10  Score=75.58  Aligned_cols=33  Identities=33%  Similarity=0.559  Sum_probs=30.6

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~   73 (225)
                      .|++|+|.+| +||+..|+|||..||+|||||..
T Consensus         8 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           8 GPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             STTEEECTTS-CEEESTTTTCSSCCCSSCSSSCT
T ss_pred             CCCeEECCCC-CeEchhhcCCCCCCCCCCCccCc
Confidence            3789999998 69999999999999999999974

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.8e-10  Score=74.51  Aligned_cols=35  Identities=34%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             CCC-CCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACP-AGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~-~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|. +++|.|.+|    .||+..|+|||+.||.|||||..
T Consensus         5 ~C~~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           5 LCEGPNKFKCHSG----ECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             SCCSTTEEECTTS----CEEESTTTTCSSCCCSSCSSSCT
T ss_pred             cCCCCCeEECCCC----CeEchhhcCCCCCCCCCCCccCc
Confidence            465 689999998    79999999999999999999974

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.90  E-value=3.4e-10  Score=74.03  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=30.4

Q ss_pred             CCCCceecCCC-CceecCCCCCCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPG   73 (225)
Q Consensus        39 ~~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~   73 (225)
                      ..+++|+|.++ .+|||..|+|||..||+|||||..
T Consensus         3 C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d2gtlm2           3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP   38 (42)
T ss_dssp             CCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred             CCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence            45789999853 379999999999999999999953

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2e-10  Score=74.11  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             CCCceecCCCCceecCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (225)
Q Consensus        40 ~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~   73 (225)
                      .+++|+|.+| .|||..|+|||..||.|||||..
T Consensus         4 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           4 GPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             CTTEEECTTS-CEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             CCCceEcCCC-CeEChhhcCCCCCCCCCCCcCCC
Confidence            3679999998 69999999999999999999975

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.89  E-value=2.1e-10  Score=74.85  Aligned_cols=35  Identities=31%  Similarity=0.595  Sum_probs=30.2

Q ss_pred             CCCceecCCC----CceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDG----SKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dG----s~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|.+.    .+|||.+|+|||..||+|||||.+|
T Consensus         3 ~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~C   41 (42)
T d1k7ba_           3 PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   41 (42)
T ss_dssp             STTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhcc
Confidence            4679999753    2699999999999999999999874

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.89  E-value=1.3e-10  Score=75.54  Aligned_cols=35  Identities=20%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             CCCceecCCC-CceecCCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        40 ~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      .+++|+|..+ .+|||..|+|||..||+|||||.+|
T Consensus         4 ~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C   39 (41)
T d2gtlo2           4 DEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC   39 (41)
T ss_dssp             CTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred             CcCeeECCCCCCcEeechhccCCCCcCCCCchhccC
Confidence            4689999732 3799999999999999999999875

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.89  E-value=1.5e-10  Score=75.29  Aligned_cols=37  Identities=38%  Similarity=0.597  Sum_probs=32.0

Q ss_pred             CCCCCeeecCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      .|++++|+|.++  .++||+.+|+|||..||.|||||.+
T Consensus         2 ~C~~~~f~C~~~--~~~CI~~~~~CDg~~DC~dgsDE~~   38 (41)
T d2gtlo2           2 SCDEHEHQCGGD--DPQCISKLFVCDGHNDCRNGEDEKD   38 (41)
T ss_dssp             SSCTTEEECCSS--SCCEEEGGGTTSSSCCSSSCHHHHC
T ss_pred             CCCcCeeECCCC--CCcEeechhccCCCCcCCCCchhcc
Confidence            589999999642  1279999999999999999999974

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.87  E-value=3.6e-10  Score=73.70  Aligned_cols=39  Identities=31%  Similarity=0.623  Sum_probs=32.8

Q ss_pred             CCCCCeeecCCCC-CCcccccCCCccCCCCCCCCCCCCCC
Q 027304           76 ACPAGKFYCGNVG-STPQFIFSSRVNDRICDCCDGSDEYD  114 (225)
Q Consensus        76 ~C~~~~F~C~Ngg-~~~~CI~~s~VCDGv~DC~DGSDE~~  114 (225)
                      +|++++|.|.+.. ...+|||.+|+|||..||.|||||.+
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~   40 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   40 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhc
Confidence            4889999998652 12369999999999999999999974

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.83  E-value=1.1e-09  Score=71.15  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             CCCceecCCC-CceecCCCCCCCCCCCCCCCCCCC
Q 027304           40 SKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPG   73 (225)
Q Consensus        40 ~p~~F~C~dG-s~CIp~s~vCDG~~DC~DGSDE~~   73 (225)
                      .+++|+|.++ .+|||.+|+|||..||+|||||..
T Consensus         3 ~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           3 EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             CTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            4789999742 379999999999999999999975

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1e-09  Score=72.18  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=31.7

Q ss_pred             CCCCceecCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 027304           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (225)
Q Consensus        39 ~~p~~F~C~dGs~CIp~s~vCDG~~DC~DGSDE~~c   74 (225)
                      ..+++|+|.+| +|||..++|||..||.|||||.++
T Consensus         5 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           5 CSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SCTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CCCCcEEcCCC-CEEChhhcCcCcccCCCCCcCCCC
Confidence            35689999998 799999999999999999999874