Citrus Sinensis ID: 027311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MLRCCASRYLLKRNLGIATSLILTRHFTSNCKQTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHHccccccccccEEcccccccHHHHHHHcccccccccccccccEEcEEcccccEEEEccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEEEEccccccEEHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcEEEEEEEcccccccccccHHHHHHHHHHccccEcccccEEEcccccccHHHHHHHHcccccccccEEEccEEEEEcccccEEEEccccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MLRCCASRYLLKRNLGIATSLILTRhftsnckqtllrpsksnpislvsrpcffasrsdhtmasqsktsvhdfsvkdakgqdvdlsiykGKLLLIVNVASqcgltnsnytELSQLYDKYKNQGLeilafpcnqfgaqepgdneqIQEFACTRfkaefpifdkvdvngdnaaPLYKHLksskgglfgdsiKWNFSKFlvdkegnvveryapttsplSIEVVLECLCC
Flexible Loop (DISEMBL)
MLRCCASRYLLKRNLGIATSLILTRHFTSNCKQtllrpsksnpislVSRPCFFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERyapttsplsieVVLECLCC
Low Complexity Region (SEG)
MLRCCASRYLLKRNLGIATSLILTRHFTSNCKQTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC
Disordered region (IsUnstruct)
**RCCASRYLLKRNLGIATSLILTRHFTSNCKQTLLR******ISLVSRPCFF*************************GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC*
Disordered Region (DISOPRED)
*************NL**************************NPISLVSRPCF***************SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC
Disordered Region (DISEMBL)
MLRCCASRYLLKRNLGIATSLILTRHFTSNCKQTLLRPSKSNPISLVSRPCFFASR**************DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC
Disordered Region (DISPRO)
MLRCCASRYLLKRNLGIATSLILT********QTLLRPS*SNPISLVSRPCFFA**********SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRCCASRYLLKRNLGIATSLILTRHFTSNCKQTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q06652	167	Probable phospholipid hyd	no	no	0.697	0.940	0.993	5e-89
O48646	232	Probable phospholipid hyd	yes	no	0.724	0.702	0.810	3e-76
Q9LEF0	170	Probable phospholipid hyd	N/A	no	0.697	0.923	0.818	4e-74
P30708	169	Probable phospholipid hyd	N/A	no	0.697	0.928	0.805	9e-73
Q9FXS3	169	Probable phospholipid hyd	N/A	no	0.697	0.928	0.798	1e-72
O24031	169	Probable phospholipid hyd	N/A	no	0.697	0.928	0.779	1e-71
O49069	170	Probable phospholipid hyd	N/A	no	0.697	0.923	0.8	1e-71
O23814	171	Probable phospholipid hyd	N/A	no	0.697	0.918	0.787	2e-71
Q9SZ54	233	Putative glutathione pero	no	no	0.724	0.699	0.705	2e-65
O23968	180	Probable phospholipid hyd	N/A	no	0.711	0.888	0.731	6e-65

>sp|Q06652|GPX4_CITSI Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1

 Score =  327 bits (837), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 156/157 (99%), Positives = 157/157 (100%)

Query: 61  MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120
           MASQSKTSVHDF+VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN
Sbjct: 1   MASQSKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 60

Query: 121 QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 180
           QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK
Sbjct: 61  QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 120

Query: 181 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE
Sbjct: 121 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 157

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.
Citrus sinensis (taxid: 2711)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 2

>sp|O48646|GPX6_ARATH Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2

 Score =  285 bits (728), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 133/164 (81%), Positives = 151/164 (92%), Gaps = 1/164 (0%)

Query: 55  SRSDHTMASQSK-TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113
           SRS+H+MA+ S+  S++DF+VKDAKG DVDLSIYKGK+LLIVNVASQCGLTNSNYTEL+Q
Sbjct: 58  SRSEHSMAASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQ 117

Query: 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLY 173
           LY+KYK  G EILAFPCNQFG QEPG NE+I +FACTRFKAE+PIFDKVDVNGD AAP+Y
Sbjct: 118 LYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVY 177

Query: 174 KHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           K LKSSKGGLFGD IKWNF+KFLVDK+GNVV+R+APTTSPLSIE
Sbjct: 178 KFLKSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIE 221

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9LEF0|GPX4_MESCR Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1

 Score =  277 bits (709), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 131/160 (81%), Positives = 146/160 (91%), Gaps = 3/160 (1%)

Query: 61  MASQSK---TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDK 117
           MASQS     S+HDF VKDA+G DVDLSIYKGK+LLIVNVASQCGLTNSNY EL++LY++
Sbjct: 1   MASQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQ 60

Query: 118 YKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK 177
           YK++GLEILAFPCNQFG QEPGDNEQI EFACTRFKAEFPIFDKVDVNG NAAP+YK+LK
Sbjct: 61  YKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLK 120

Query: 178 SSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           SSKGGLFGD IKWNF+KFLVD++G VV+RYAPTTSP SIE
Sbjct: 121 SSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIE 160

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P30708|GPX4_NICSY Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1

 Score =  273 bits (697), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 144/159 (90%), Gaps = 2/159 (1%)

Query: 61  MASQSKT--SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118
           MASQS    S++DF+VKDAKG DVDLSIYKGK+L+IVNVASQCGLTNSNYT+L+++Y KY
Sbjct: 1   MASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKY 60

Query: 119 KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS 178
           K+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKS
Sbjct: 61  KDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKS 120

Query: 179 SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           SKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+E
Sbjct: 121 SKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASME 159

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Nicotiana sylvestris (taxid: 4096)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9FXS3|GPX4_TOBAC Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1

 Score =  272 bits (696), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 144/159 (90%), Gaps = 2/159 (1%)

Query: 61  MASQSKT--SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118
           MASQS    S++DF+VKDAKG DVDLSIYKGK+L+IVNVASQCGLTNSNYT+++++Y KY
Sbjct: 1   MASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKY 60

Query: 119 KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS 178
           K+QGLEILAFPCNQFG QEPG  E+IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LKS
Sbjct: 61  KDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKS 120

Query: 179 SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           SKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+E
Sbjct: 121 SKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASME 159

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24031|GPX4_SOLLC Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1

 Score =  269 bits (687), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 145/159 (91%), Gaps = 2/159 (1%)

Query: 61  MASQSKT--SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118
           MA+Q+    SV+DF+VKDAKG+DVDLSIYKGK+L+IVNVASQCGLTNSNYT++++LY KY
Sbjct: 1   MATQTSNPQSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKY 60

Query: 119 KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS 178
           K+QGLEILAFPCNQFG QEPG+ E IQ+  CTRFKAE+PIFDKVDVNGDNAAPLY+ LKS
Sbjct: 61  KDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKS 120

Query: 179 SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           SKGG FGD IKWNFSKFL+DKEG+VV+RY+PTTSP S+E
Sbjct: 121 SKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASME 159

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O49069|GPX4_GOSHI Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1

 Score =  269 bits (687), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/160 (80%), Positives = 143/160 (89%), Gaps = 3/160 (1%)

Query: 61  MASQSKT--SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118
           MASQS    S++DF+VKDAKG DVDLSIYKGK+L+IVNVASQCGLTNSNYT+L+++Y KY
Sbjct: 1   MASQSSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKY 60

Query: 119 KNQGLEILAFPCNQFGAQEPGD-NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK 177
           K+QGLEILAFPCNQFG QEPG   E IQ   CTRFKAE+PIFDKVDVNGDNAAPLYK LK
Sbjct: 61  KDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLK 120

Query: 178 SSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           SSKGG FGDSIKWNFSKFLVDKEGNVV+RY+PTT+P S+E
Sbjct: 121 SSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASME 160

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Gossypium hirsutum (taxid: 3635)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O23814|GPX4_SPIOL Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1

 Score =  268 bits (686), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/160 (78%), Positives = 143/160 (89%), Gaps = 3/160 (1%)

Query: 61  MASQSKT---SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDK 117
           MAS S     SVH+F V+DA+G DVDLSIYKGK+LLIVNVASQCGLTNSNYTE+++LY+K
Sbjct: 1   MASDSSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEK 60

Query: 118 YKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK 177
           Y+  GLEILAFPCNQFG QEPG NE++ EFACTRFKAE+PIFDKVDVNG NAAP+YK LK
Sbjct: 61  YRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLK 120

Query: 178 SSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           SSKGGLFGD +KWNF+KFLVDK+GNVV+RYAPTTSP SIE
Sbjct: 121 SSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIE 160

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9SZ54|GPX7_ARATH Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=3 SV=2

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/163 (70%), Positives = 133/163 (81%)

Query: 63  SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG 122
           + ++ SVHDF+VKD  G DV L  +KGK LLIVNVAS+CGLT+SNY+ELSQLY+KYKNQG
Sbjct: 70  AAAEKSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYEKYKNQG 129

Query: 123 LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG 182
            EILAFPCNQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+YK LKS+ GG
Sbjct: 130 FEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGG 189

Query: 183 LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC 225
             GD IKWNF KFLVDK+G VVERY PTTSP  IE  ++ L  
Sbjct: 190 FLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIEKDIQKLLA 232

May constitute a glutathione peroxidase-like protective system against oxidative stresses.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|O23968|GPX4_HELAN Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1

 Score =  246 bits (629), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 131/160 (81%)

Query: 58  DHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDK 117
           D  +      + + FS KD KGQDV+LS YKGK+LLIVNVASQCG TNSNY EL+ LY K
Sbjct: 11  DDVLQQPPMPADNAFSDKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQK 70

Query: 118 YKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK 177
           YK+QG EILAFPCNQFG QEPG NE+IQ FACTRFKAE+P+F KV+VNG  A PLYK LK
Sbjct: 71  YKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLK 130

Query: 178 SSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           SSKGG  GDSIKWNF+KFLVD+EG VV+RYAPTTSPLSIE
Sbjct: 131 SSKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTTSPLSIE 170

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Helianthus annuus (taxid: 4232)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
34786892	167	phospholipid hydroperoxide glutathione p	0.697	0.940	1.0	1e-87
544437	167	RecName: Full=Probable phospholipid hydr	0.697	0.940	0.993	3e-87
224071850	251	glutathione peroxidase [Populus trichoca	0.937	0.840	0.695	6e-82
118485257	238	unknown [Populus trichocarpa]	0.937	0.886	0.695	1e-81
356528228	225	PREDICTED: probable phospholipid hydrope	0.955	0.955	0.701	1e-81
449452336	241	PREDICTED: probable phospholipid hydrope	0.977	0.912	0.676	5e-81
37930463	236	glutathione peroxidase 1 [Lotus japonicu	0.862	0.822	0.761	9e-81
255628131	225	unknown [Glycine max]	0.991	0.991	0.682	1e-80
205364142	168	glutathione peroxidase [Litchi chinensis	0.697	0.934	0.911	7e-79
188485746	168	glutathione peroxidase [Dimocarpus longa	0.697	0.934	0.886	5e-77

>gi|34786892|emb|CAE46896.1| phospholipid hydroperoxide glutathione peroxidase [Citrus sinensis]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 61  MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120
           MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN
Sbjct: 1   MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 60

Query: 121 QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 180
           QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK
Sbjct: 61  QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 120

Query: 181 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE
Sbjct: 121 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 157

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|544437|sp|Q06652.1|GPX4_CITSI RecName: Full=Probable phospholipid hydroperoxide glutathione peroxidase; Short=PHGPx; AltName: Full=Salt-associated protein gi|296358|emb|CAA47018.1| CIT-SAP [Citrus sinensis] gi|119367482|gb|ABL67656.1| putative phospholipid hydroperoxide glutathione peroxidase [Citrus hybrid cultivar]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/157 (99%), Positives = 157/157 (100%)

Query: 61  MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120
           MASQSKTSVHDF+VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN
Sbjct: 1   MASQSKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 60

Query: 121 QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 180
           QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK
Sbjct: 61  QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 120

Query: 181 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE
Sbjct: 121 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 157

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071850|ref|XP_002303583.1| glutathione peroxidase [Populus trichocarpa] gi|222841015|gb|EEE78562.1| glutathione peroxidase [Populus trichocarpa]

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 183/223 (82%), Gaps = 12/223 (5%)

Query: 7   SRYLLKRNLGIAT---SLILTRHFTSNCKQTLLRPSKSNPISL--------VSRPCFFAS 55
           SR L ++ L  A+   S +L++  + N KQTLL    ++P+SL        VSR    + 
Sbjct: 19  SRILSQKYLNFASLSASFLLSKQSSFNSKQTLLPSLHNSPVSLYSQSIKAGVSRRLLGSV 78

Query: 56  RSDHTMASQSK-TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQL 114
           R +H+MASQS   S HDF+VKDAKG DVDLSIYKGK+LLIVNVASQCGLT+SNYTEL+QL
Sbjct: 79  RFNHSMASQSSPQSAHDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTDSNYTELTQL 138

Query: 115 YDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYK 174
           Y KYK+QGLEILAFPCNQFG+QEPG +E+I EFACTRFKAE+PIFDKV+VNG+NAAP+YK
Sbjct: 139 YAKYKDQGLEILAFPCNQFGSQEPGSSEEIVEFACTRFKAEYPIFDKVEVNGNNAAPIYK 198

Query: 175 HLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           +LKSSKGGLFGD+IKWNFSKFLVDKEG VV+RYAPTTSPLSIE
Sbjct: 199 YLKSSKGGLFGDNIKWNFSKFLVDKEGKVVDRYAPTTSPLSIE 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485257|gb|ABK94488.1| unknown [Populus trichocarpa]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 183/223 (82%), Gaps = 12/223 (5%)

Query: 7   SRYLLKRNLGIAT---SLILTRHFTSNCKQTLLRPSKSNPISL--------VSRPCFFAS 55
           SR L ++ L  A+   S +L++  + N KQTLL    ++P+SL        VSR    + 
Sbjct: 6   SRILSQKYLNFASLSASFLLSKQSSFNSKQTLLPSLHNSPVSLYSQSIKAGVSRRLLGSV 65

Query: 56  RSDHTMASQSK-TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQL 114
           R +H+MASQS   S HDF+VKDAKG DVDLSIYKGK+LLIVNVASQCGLT+SNYTEL+QL
Sbjct: 66  RFNHSMASQSSPQSAHDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTDSNYTELTQL 125

Query: 115 YDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYK 174
           Y KYK+QGLEILAFPCNQFG+QEPG +E+I EFACTRFKAE+PIFDKV+VNG+NAAP+YK
Sbjct: 126 YAKYKDQGLEILAFPCNQFGSQEPGSSEEIVEFACTRFKAEYPIFDKVEVNGNNAAPIYK 185

Query: 175 HLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           +LKSSKGGLFGD+IKWNFSKFLVDKEG VV+RYAPTTSPLSIE
Sbjct: 186 YLKSSKGGLFGDNIKWNFSKFLVDKEGKVVDRYAPTTSPLSIE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528228|ref|XP_003532707.1| PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Glycine max]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 153/218 (70%), Positives = 172/218 (78%), Gaps = 3/218 (1%)

Query: 1   MLRCCASRYLLKRNLGIATSLILTR-HFTSNCKQTLLRPSKSNPISLVSRPCFFASRSDH 59
           ML   A+R    R+  I  S   +   F SN  +TL RP      S    P  F+ R+DH
Sbjct: 1   MLSISATRIFFLRSTTIRLSSSSSSLQFFSNPNRTLFRPFLHT--SFKPLPSSFSFRTDH 58

Query: 60  TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
           TMA+ +  SVHDF+VKDAKG D++L  YKGK+L+IVNVASQCGLTNSNYTELSQLY+KYK
Sbjct: 59  TMATSNAKSVHDFTVKDAKGNDINLGDYKGKVLIIVNVASQCGLTNSNYTELSQLYEKYK 118

Query: 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS 179
            +GLEILAFPCNQFGAQEPG NEQIQEF CTRFKAEFP+FDKVDVNGD AAPLYK+LKSS
Sbjct: 119 QKGLEILAFPCNQFGAQEPGSNEQIQEFVCTRFKAEFPVFDKVDVNGDKAAPLYKYLKSS 178

Query: 180 KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           KGGL GD IKWNF+KFLVDKEGNVV+RYAPTTSPLSIE
Sbjct: 179 KGGLLGDGIKWNFAKFLVDKEGNVVDRYAPTTSPLSIE 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452336|ref|XP_004143915.1| PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial-like [Cucumis sativus] gi|449495824|ref|XP_004159955.1| PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial-like [Cucumis sativus]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 159/235 (67%), Positives = 183/235 (77%), Gaps = 15/235 (6%)

Query: 4   CCAS-RYLLKRNLGIAT------SLILTRHFTSNCKQTLLRPSKSNPISLVSRP------ 50
           C +S R LL RNL  +       SL+    F  + KQ LL  ++ + ++    P      
Sbjct: 3   CSSSIRSLLTRNLFFSVRSLSSSSLLSNTRFNHDSKQILLHITQFSSLTRFVSPINSRSS 62

Query: 51  --CFFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNY 108
               F +R DHTMA+ SKTSVHDF+VKDAKG+DVDLS YKGK+LLIVNVASQCGLTNSNY
Sbjct: 63  LIASFFTRFDHTMATPSKTSVHDFTVKDAKGKDVDLSAYKGKVLLIVNVASQCGLTNSNY 122

Query: 109 TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168
           TELSQLY+KYK  G EILAFPCNQFG+QEPG NE+I +FACTRFKAE+PIFDKVDVNG+N
Sbjct: 123 TELSQLYEKYKGHGFEILAFPCNQFGSQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNN 182

Query: 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           AAPLYK LKSSKGGLFGD+IKWNFSKFLVDK+GNVV+RYAPTTSPLSIE  L+ L
Sbjct: 183 AAPLYKFLKSSKGGLFGDAIKWNFSKFLVDKDGNVVDRYAPTTSPLSIEKDLKKL 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37930463|gb|AAP69867.1| glutathione peroxidase 1 [Lotus japonicus]

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 150/197 (76%), Positives = 168/197 (85%), Gaps = 3/197 (1%)

Query: 21  LILTRHFTSNCKQTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVHDFSVKDAKGQ 80
           + L+R + S+   T   P KS  +S  + P  F  R DHTMA+   TSV+DF+VKDA+G 
Sbjct: 34  ITLSRSYHSSLLTTTSFPIKS-LVSTSTTPFSFTLRPDHTMAA--PTSVYDFTVKDARGN 90

Query: 81  DVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD 140
           DV+L  YKGK+LLIVNVASQCGLTNSNYTELSQLY+KYK++GLEIL FPCNQFGAQEPGD
Sbjct: 91  DVNLGDYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKSKGLEILGFPCNQFGAQEPGD 150

Query: 141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE 200
           NEQIQEF CTRFKAEFP+FDKVDVNGD+AAPLYK+LKSSKGGLFGD IKWNFSKFLVDKE
Sbjct: 151 NEQIQEFVCTRFKAEFPVFDKVDVNGDSAAPLYKYLKSSKGGLFGDKIKWNFSKFLVDKE 210

Query: 201 GNVVERYAPTTSPLSIE 217
           GNVVERYAPTTSPLSIE
Sbjct: 211 GNVVERYAPTTSPLSIE 227

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255628131|gb|ACU14410.1| unknown [Glycine max]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/227 (68%), Positives = 175/227 (77%), Gaps = 4/227 (1%)

Query: 1   MLRCCASRYLLKRNLGIATSLILTR-HFTSNCKQTLLRPSKSNPISLVSRPCFFASRSDH 59
           ML   A+R    R+  I  S   +   F SN  +TL RP      S    P  F+ R+DH
Sbjct: 1   MLSISATRIFFLRSTTIRLSSSSSSLQFFSNPNRTLFRPFLHT--SFKPLPSSFSFRTDH 58

Query: 60  TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
           TMA+ +  SVHDF+VKDAKG D++L  YKGK+L+IVNVASQCGLTNSNYTELSQLY+KYK
Sbjct: 59  TMATSNAKSVHDFTVKDAKGNDINLGDYKGKVLIIVNVASQCGLTNSNYTELSQLYEKYK 118

Query: 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS 179
            + LEILAFPCNQFGAQEPG NEQIQEF CTRFKAEFP+FDKVDVNGD AAPLYK+LKSS
Sbjct: 119 QKDLEILAFPCNQFGAQEPGSNEQIQEFVCTRFKAEFPVFDKVDVNGDKAAPLYKYLKSS 178

Query: 180 KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL-ECLCC 225
           KGGL GD IKWNF+KFLVDKEGNVV+RYAPTTSPLSIE  L E + C
Sbjct: 179 KGGLLGDGIKWNFAKFLVDKEGNVVDRYAPTTSPLSIEKGLAEVVGC 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|205364142|gb|ACI04528.1| glutathione peroxidase [Litchi chinensis] gi|217416912|gb|ACK44111.1| glutathione peroxidase [Litchi chinensis]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 144/158 (91%), Positives = 152/158 (96%), Gaps = 1/158 (0%)

Query: 61  MASQSKT-SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
           MASQSKT SV+DF+VKDA+G DVDLS YKGK+LLIVNVASQCGLTNSNYTELSQLY+KYK
Sbjct: 1   MASQSKTGSVYDFTVKDARGNDVDLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYK 60

Query: 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS 179
           NQGLEILAFPCNQFG QEPG+NEQI E ACTRFKAEFPIFDKV+VNGDNAAPLYKHLKSS
Sbjct: 61  NQGLEILAFPCNQFGGQEPGNNEQILETACTRFKAEFPIFDKVEVNGDNAAPLYKHLKSS 120

Query: 180 KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           KGGLFGDSIKWNFSKFLVDKEGNVV+RYAPTTSPLSIE
Sbjct: 121 KGGLFGDSIKWNFSKFLVDKEGNVVDRYAPTTSPLSIE 158

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188485746|gb|ABY65357.3| glutathione peroxidase [Dimocarpus longan] gi|188491673|gb|ACD44940.1| glutathione peroxidase [Dimocarpus longan]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 140/158 (88%), Positives = 152/158 (96%), Gaps = 1/158 (0%)

Query: 61  MASQSKT-SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
           MASQSKT SV+DF+VKDA+G DVDLS YKGK+LLIVNVASQCGLTNSNYTEL+QLY+KYK
Sbjct: 1   MASQSKTGSVYDFTVKDARGNDVDLSSYKGKVLLIVNVASQCGLTNSNYTELNQLYEKYK 60

Query: 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS 179
           +QGLEILAFPCNQFG QEPG+NEQI E ACTRFKAEFPIFDKV+VNGDNAAPLYKHLKSS
Sbjct: 61  SQGLEILAFPCNQFGGQEPGNNEQILETACTRFKAEFPIFDKVEVNGDNAAPLYKHLKSS 120

Query: 180 KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           KGGLFG+SIKWNFSKFLVDKEGN+V+RYAPTTSPLSIE
Sbjct: 121 KGGLFGESIKWNFSKFLVDKEGNIVDRYAPTTSPLSIE 158

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2139712	232	GPX6 "glutathione peroxidase 6	0.964	0.935	0.656	1.3e-70
TAIR|locus:2116782	233	GPX7 "glutathione peroxidase 7	0.711	0.686	0.726	3.1e-60
TAIR|locus:2040179	236	GPX1 "glutathione peroxidase 1	0.786	0.75	0.651	1.2e-58
TAIR|locus:2031331	167	GPX8 "AT1G63460" [Arabidopsis	0.697	0.940	0.662	2.2e-57
TAIR|locus:2058233	206	GPX3 "glutathione peroxidase 3	0.715	0.781	0.670	3.6e-57
TAIR|locus:2065928	169	GPX2 "glutathione peroxidase 2	0.697	0.928	0.687	5.9e-57
TAIR|locus:2099252	173	GPX5 "glutathione peroxidase 5	0.711	0.924	0.618	1.1e-53
TAIR|locus:2039346	170	GPX4 "glutathione peroxidase 4	0.693	0.917	0.621	8.3e-51
WB|WBGene00009165	163	gpx-1 [Caenorhabditis elegans	0.671	0.926	0.589	5.4e-47
WB|WBGene00011045	163	gpx-2 [Caenorhabditis elegans	0.684	0.944	0.577	1.8e-46

TAIR|locus:2139712 GPX6 "glutathione peroxidase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 145/221 (65%), Positives = 173/221 (78%)

Query:     1 MLRCCASRYLLKRNLGIATSLILTRHFTSNCKQTLLRP--SKSNPISL-VSRPCFFASRS 57
             MLR       ++R   +  SL  +   +S+ +    +P  +    ISL +S      SRS
Sbjct:     1 MLRSSIRLLYIRRTSPLLRSLSSSSSSSSSKRFDSAKPLFNSHRIISLPISTTGAKLSRS 60

Query:    58 DHTMASQSKT-SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYD 116
             +H+MA+ S+  S++DF+VKDAKG DVDLSIYKGK+LLIVNVASQCGLTNSNYTEL+QLY+
Sbjct:    61 EHSMAASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYE 120

Query:   117 KYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHL 176
             KYK  G EILAFPCNQFG QEPG NE+I +FACTRFKAE+PIFDKVDVNGD AAP+YK L
Sbjct:   121 KYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFL 180

Query:   177 KSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
             KSSKGGLFGD IKWNF+KFLVDK+GNVV+R+APTTSPLSIE
Sbjct:   181 KSSKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIE 221

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2116782 GPX7 "glutathione peroxidase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 117/161 (72%), Positives = 132/161 (81%)

Query:    57 SDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYD 116
             S +  A+  K SVHDF+VKD  G DV L  +KGK LLIVNVAS+CGLT+SNY+ELSQLY+
Sbjct:    65 SVYARAAAEK-SVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYE 123

Query:   117 KYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHL 176
             KYKNQG EILAFPCNQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+YK L
Sbjct:   124 KYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFL 183

Query:   177 KSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
             KS+ GG  GD IKWNF KFLVDK+G VVERY PTTSP  IE
Sbjct:   184 KSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIE 224

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2040179 GPX1 "glutathione peroxidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 118/181 (65%), Positives = 141/181 (77%)

Query:    41 SNPISLVS--RPCF-FASRSDHTMA-SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVN 96
             SN  SL S   P F F SR     A + ++ +VHDF+VKD  G+DV L+ +KGK++LIVN
Sbjct:    47 SNGFSLKSPINPGFLFKSRPFTVQARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVN 106

Query:    97 VASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF 156
             VAS+CGLT+SNY+ELS LY+KYK QG EILAFPCNQFG QEPG N +I++FACTRFKAEF
Sbjct:   107 VASRCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEF 166

Query:   157 PIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSI 216
             PIFDKVDVNG + AP+Y+ LKS+ GG  G  IKWNF KFL+DK+G VVERY PTTSP  I
Sbjct:   167 PIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQI 226

Query:   217 E 217
             E
Sbjct:   227 E 227

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2031331 GPX8 "AT1G63460" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 104/157 (66%), Positives = 136/157 (86%)

Query:    61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120
             MA++   SV++ S++DAKG ++ LS YK K+LLIVNVAS+CG+TNSNYTEL++LY++YK+
Sbjct:     1 MATKEPESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKD 60

Query:   121 QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 180
             +GLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+K++VNG+NA+PLYK LK  K
Sbjct:    61 KGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGK 120

Query:   181 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
              G+FGD I+WNF+KFLVDK G  V+RY PTTSPL++E
Sbjct:   121 WGIFGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLE 157

GO:0004602 "glutathione peroxidase activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0004601 "peroxidase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2058233 GPX3 "glutathione peroxidase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 108/161 (67%), Positives = 130/161 (80%)

Query:    57 SDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYD 116
             S  +   QS TS+++ SVKD +G+DV LS + GK+LLIVNVAS+CGLT+ NY E++ LY 
Sbjct:    36 SSPSTVEQSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYA 95

Query:   117 KYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHL 176
             KYK QG EILAFPCNQFG+QEPG N +I+E  C  FKAEFPIFDK++VNG N  PLY  L
Sbjct:    96 KYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFL 155

Query:   177 KSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
             K  KGGLFGD+IKWNF+KFLVD++GNVV+RYAPTTSPL IE
Sbjct:   156 KEQKGGLFGDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIE 196

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0042631 "cellular response to water deprivation" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2065928 GPX2 "glutathione peroxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 108/157 (68%), Positives = 129/157 (82%)

Query:    61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120
             MA +S  S++DF+VKD  G DV L  YKGK LL+VNVAS+CGLT++NY EL+ LY+KYK 
Sbjct:     1 MADESPKSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKE 60

Query:   121 QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 180
             QGLEILAFPCNQF  QEPG+NE+IQ+  CTRFKAEFPIFDKVDVNG N APLYK+LK+ K
Sbjct:    61 QGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEK 120

Query:   181 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
             GGL  D+IKWNF+KFLV  +G V++RY+P TSPL  E
Sbjct:   121 GGLLIDAIKWNFTKFLVSPDGKVLQRYSPRTSPLQFE 157

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=NAS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2099252 GPX5 "glutathione peroxidase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 99/160 (61%), Positives = 129/160 (80%)

Query:    62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
             +S S+ S+H F+VKD+ G++VDLS+Y+GK+LL+VNVAS+CG T SNYT+L++LY KYK+Q
Sbjct:     7 SSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQ 66

Query:   122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
             G  +LAFPCNQF +QEPG +E+  +FACTRFKAE+P+F KV VNG NAAP+YK LKS K 
Sbjct:    67 GFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKP 126

Query:   182 GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221
                G  IKWNF+KFLV K+G V++RY  T SPLSI+  +E
Sbjct:   127 SFLGSRIKWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIE 166

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2039346 GPX4 "glutathione peroxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 97/156 (62%), Positives = 124/156 (79%)

Query:    62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
             AS  + SVH F+VKD+ G+D+++SIY+GK+LLIVNVAS+CG T +NYT+L++LY KYK+Q
Sbjct:     5 ASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQ 64

Query:   122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
               EILAFPCNQF  QEPG +++  EFAC RFKAE+P+F KV VNG NAAP+YK LK+SK 
Sbjct:    65 DFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKP 124

Query:   182 GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
                G  IKWNF+KFLV K+G V++RY    +PLSIE
Sbjct:   125 TFLGSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIE 160

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=NAS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

WB|WBGene00009165 gpx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 89/151 (58%), Positives = 113/151 (74%)

Query:    67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
             +SV+DF+VK+A G DV LS YKGK+L+IVNVASQCGLTN NYT+L +L D YK  GLE+L
Sbjct:     2 SSVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVL 61

Query:   127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD 186
             AFPCNQF  QEP     IQ F   +FK E  +F K+DVNGD  +PL+K LK+ KGG   D
Sbjct:    62 AFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFD 121

Query:   187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
             +IKWNF+KFLV ++G +++R+ PTT P  +E
Sbjct:   122 AIKWNFTKFLVGRDGKIIKRFGPTTDPKDME 152

GO:0055114 "oxidation-reduction process" evidence=IEA;IMP

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004602 "glutathione peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0090087 "regulation of peptide transport" evidence=IMP

GO:0047066 "phospholipid-hydroperoxide glutathione peroxidase activity" evidence=IMP

WB|WBGene00011045 gpx-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 89/154 (57%), Positives = 114/154 (74%)

Query:    68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
             SVH  +VK+A+G+D  LS Y+GK+L+IVNVASQCGLTNSNY +  +L D YK  GLE+LA
Sbjct:     3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLA 62

Query:   128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
             FPCNQFG QEP     I  F   +FK E  +F K+DVNGDN APLYK LK  KGG   D+
Sbjct:    63 FPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDA 122

Query:   188 IKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221
             IKWNF+KFLV ++G+V++R++PTT P  ++  +E
Sbjct:   123 IKWNFTKFLVGRDGHVIKRFSPTTEPKDMKKDIE 156

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004602 "glutathione peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z9N7	BSAA_BACHD	1, ., -, ., -, ., -	0.5320	0.6888	0.9872	yes	no
P38143	GPX2_YEAST	1, ., 1, 1, ., 1, ., 9	0.5189	0.6933	0.9629	yes	no
O23814	GPX4_SPIOL	1, ., 1, 1, ., 1, ., 1, 2	0.7875	0.6977	0.9181	N/A	no
O70325	GPX41_MOUSE	1, ., 1, 1, ., 1, ., 1, 2	0.5029	0.7288	0.8324	yes	no
Q9N2J2	GPX4_BOVIN	1, ., 1, 1, ., 1, ., 1, 2	0.5146	0.7288	0.8324	yes	no
Q9FXS3	GPX4_TOBAC	1, ., 1, 1, ., 1, ., 1, 2	0.7987	0.6977	0.9289	N/A	no
Q9LEF0	GPX4_MESCR	1, ., 1, 1, ., 1, ., 1, 2	0.8187	0.6977	0.9235	N/A	no
O23968	GPX4_HELAN	1, ., 1, 1, ., 1, ., 1, 2	0.7312	0.7111	0.8888	N/A	no
O24031	GPX4_SOLLC	1, ., 1, 1, ., 1, ., 1, 2	0.7798	0.6977	0.9289	N/A	no
Q06652	GPX4_CITSI	1, ., 1, 1, ., 1, ., 1, 2	0.9936	0.6977	0.9401	no	no
P36968	GPX4_PIG	1, ., 1, 1, ., 1, ., 1, 2	0.5029	0.7288	0.8324	yes	no
P30708	GPX4_NICSY	1, ., 1, 1, ., 1, ., 1, 2	0.8050	0.6977	0.9289	N/A	no
O48646	GPX6_ARATH	1, ., 1, 1, ., 1, ., 1, 2	0.8109	0.7244	0.7025	yes	no
O02621	GPX1_CAEEL	1, ., 1, 1, ., 1, ., 9	0.5894	0.6711	0.9263	yes	no
O49069	GPX4_GOSHI	1, ., 1, 1, ., 1, ., 1, 2	0.8	0.6977	0.9235	N/A	no
Q32QL6	GPX4_CALJA	1, ., 1, 1, ., 1, ., 1, 2	0.5279	0.7022	0.8020	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.11.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
PLN02412	167	PLN02412, PLN02412, probable glutathione peroxidas	1e-92
PLN02399	236	PLN02399, PLN02399, phospholipid hydroperoxide glu	2e-91
cd00340	152	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxid	2e-91
COG0386	162	COG0386, BtuE, Glutathione peroxidase [Posttransla	1e-83
pfam00255	108	pfam00255, GSHPx, Glutathione peroxidase	7e-61
PTZ00256	183	PTZ00256, PTZ00256, glutathione peroxidase; Provis	3e-57
PRK10606	183	PRK10606, btuE, putative glutathione peroxidase; P	1e-54
PTZ00056	199	PTZ00056, PTZ00056, glutathione peroxidase; Provis	8e-46
TIGR02540	153	TIGR02540, gpx7, putative glutathione peroxidase G	2e-43
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	2e-09
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	2e-06
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	5e-05
pfam08534	142	pfam08534, Redoxin, Redoxin	1e-04

>gnl|CDD|166053 PLN02412, PLN02412, probable glutathione peroxidase

 Score =  268 bits (687), Expect = 1e-92
 Identities = 117/157 (74%), Positives = 134/157 (85%)

Query: 61  MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN 120
           MA +S  S++DF+VKD  G DV L+ YKGK+LLIVNVAS+CGLT+SNY EL+ LY+KYK 
Sbjct: 1   MAEESPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE 60

Query: 121 QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK 180
           QG EILAFPCNQF  QEPG NE+IQ+  CTRFKAEFPIFDKVDVNG N APLYK+LK+ K
Sbjct: 61  QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEK 120

Query: 181 GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           GGLFGD+IKWNF+KFLV KEG VV+RYAPTTSPL IE
Sbjct: 121 GGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIE 157

Length = 167

>gnl|CDD|178021 PLN02399, PLN02399, phospholipid hydroperoxide glutathione peroxidase

 Score =  267 bits (685), Expect = 2e-91
 Identities = 124/207 (59%), Positives = 148/207 (71%), Gaps = 13/207 (6%)

Query: 11  LKRNLGIATSLILTRHFTSNCKQTLLRPSKSNPISLVSRPCFFASRSDHTMASQSKTSVH 70
           LK + GI+ S  L+  F+       L+   S      SR     +R+       ++ SVH
Sbjct: 34  LKSSTGISKSAFLSNGFS-------LKSPNSPGFLSKSRSFGVYARA------ATEKSVH 80

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130
           DF+VKD  G+DV LS +KGK+LLIVNVAS+CGLT+SNY+ELS LY+KYK QG EILAFPC
Sbjct: 81  DFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140

Query: 131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKW 190
           NQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+Y+ LKS+ GG  GD IKW
Sbjct: 141 NQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKW 200

Query: 191 NFSKFLVDKEGNVVERYAPTTSPLSIE 217
           NF KFLVDK G VVERY PTTSP  IE
Sbjct: 201 NFEKFLVDKNGKVVERYPPTTSPFQIE 227

Length = 236

>gnl|CDD|238207 cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

 Score =  264 bits (678), Expect = 2e-91
 Identities = 92/150 (61%), Positives = 114/150 (76%), Gaps = 1/150 (0%)

Query: 68  SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
           S++DFSVKD  G+ V LS YKGK+LLIVNVAS+CG T   Y  L  LY+KYK++GL +L 
Sbjct: 1   SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCGFT-PQYEGLEALYEKYKDRGLVVLG 59

Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
           FPCNQFG QEPG NE+I+EF  T +   FP+F K+DVNG+NA PLYK+LK    GL G  
Sbjct: 60  FPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKD 119

Query: 188 IKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           IKWNF+KFLVD++G VV+R+APTT P  +E
Sbjct: 120 IKWNFTKFLVDRDGEVVKRFAPTTDPEELE 149

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. Length = 152

>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

 Score =  245 bits (628), Expect = 1e-83
 Identities = 91/158 (57%), Positives = 114/158 (72%), Gaps = 2/158 (1%)

Query: 67  TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
            S++DFSVKD  G+ V LS YKGK+LLIVN AS+CG T   Y  L  LY KYK++G E+L
Sbjct: 3   MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFT-PQYEGLEALYKKYKDKGFEVL 61

Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG-LFG 185
            FPCNQFG QEPG +E+I +F    +   FP+F K+DVNG NA PLYK+LK  K G L G
Sbjct: 62  GFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGG 121

Query: 186 DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
             IKWNF+KFLVD++GNVV+R++P T P  IE+ +E L
Sbjct: 122 KDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKL 159

Length = 162

>gnl|CDD|201117 pfam00255, GSHPx, Glutathione peroxidase

 Score =  185 bits (473), Expect = 7e-61
 Identities = 66/109 (60%), Positives = 83/109 (76%), Gaps = 1/109 (0%)

Query: 69  VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128
           ++DFS KD  G+ V L  Y+GK+LLIVNVAS+CGLT   YTEL++L ++YK++GL IL F
Sbjct: 1   IYDFSAKDINGEPVPLDQYRGKVLLIVNVASKCGLTP-QYTELNELQERYKDRGLVILGF 59

Query: 129 PCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK 177
           PCNQFG QEPG NE+I+ F    +   FPIF K+DVNG+NA PLYK LK
Sbjct: 60  PCNQFGKQEPGSNEEIKYFRPGGYGVTFPIFSKIDVNGENAHPLYKFLK 108

Length = 108

>gnl|CDD|173495 PTZ00256, PTZ00256, glutathione peroxidase; Provisional

 Score =  179 bits (455), Expect = 3e-57
 Identities = 72/164 (43%), Positives = 108/164 (65%), Gaps = 6/164 (3%)

Query: 66  KTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLE 124
             S  +F   D  GQ V LS +KG K +++VNVA +CGLT+ +YT+L +LY +YK+QGLE
Sbjct: 17  TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLE 76

Query: 125 ILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF 184
           ILAFPCNQF  QEP D  +I+E+   +F  +FP+F K++VNG+N   +YK+L+ +     
Sbjct: 77  ILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQ 136

Query: 185 GDS-----IKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
            ++     I WNF+KFL+D +G VV+ ++P  +P  +   +E L
Sbjct: 137 NNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKL 180

Length = 183

>gnl|CDD|182585 PRK10606, btuE, putative glutathione peroxidase; Provisional

 Score =  172 bits (437), Expect = 1e-54
 Identities = 65/167 (38%), Positives = 92/167 (55%), Gaps = 21/167 (12%)

Query: 67  TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
            S+    V    G+   L  Y G +LLIVNVAS+CGLT   Y +L  +   + +QG  +L
Sbjct: 3   DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLT-PQYEQLENIQKAWADQGFVVL 61

Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHL---------- 176
            FPCNQF  QEPG +E+I+ +  T +   FP+F K++VNG+   PLY+ L          
Sbjct: 62  GFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAP 121

Query: 177 --------KSSKG--GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP 213
                     SKG   L+ D I WNF KFLV ++G V++R++P  +P
Sbjct: 122 EESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTP 168

Length = 183

>gnl|CDD|240248 PTZ00056, PTZ00056, glutathione peroxidase; Provisional

 Score =  150 bits (381), Expect = 8e-46
 Identities = 64/172 (37%), Positives = 105/172 (61%), Gaps = 10/172 (5%)

Query: 52  FFASRSDHTMASQS-KTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTE 110
           FF      T++    + S++D++VK  +G  V +S  K K+L+I N AS+CGLT  +  +
Sbjct: 4   FFKKI---TVSKDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQ 60

Query: 111 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAA 170
           +++L+  +   GLEILAFP +QF  QE  + + I++F   + K ++  F+ ++VNG+N  
Sbjct: 61  MNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFN-DKNKIKYNFFEPIEVNGENTH 119

Query: 171 PLYKHLKSSKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
            L+K LK++   +  +     +I WNF KFLV+K GNVV  ++P T PL +E
Sbjct: 120 ELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELE 171

Length = 199

>gnl|CDD|131592 TIGR02540, gpx7, putative glutathione peroxidase Gpx7

 Score =  143 bits (361), Expect = 2e-43
 Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 4/149 (2%)

Query: 68  SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
             + F VKDA+G+ V L  Y+GK+ L+VNVAS+CG T+ NY  L +L+ +       +LA
Sbjct: 1   DFYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLA 60

Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
           FPCNQFG  EP  +++I+ FA   +   FP+F K+ + G  A P ++ L  S        
Sbjct: 61  FPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSS----KKE 116

Query: 188 IKWNFSKFLVDKEGNVVERYAPTTSPLSI 216
            +WNF K+LV+ EG VV+ + P      I
Sbjct: 117 PRWNFWKYLVNPEGQVVKFWRPEEPVEEI 145

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. Length = 153

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 25/139 (17%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
           DFS+ D  G+ V LS  KGK++L VN  AS C    +   EL  L  +YK+ G+E++   
Sbjct: 1   DFSLPDLDGKPVSLSDLKGKVVL-VNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGV- 58

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
                  +  D   ++ F   ++   FP+   +D +G+  A  Y        G+ G    
Sbjct: 59  -----NVDDDDPAAVKAFL-KKYGITFPVL--LDPDGE-LAKAY--------GVRG---- 97

Query: 190 WNFSKFLVDKEGNVVERYA 208
              + FL+D++G +  R+ 
Sbjct: 98  LPTT-FLIDRDGRIRARHV 115

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 20/137 (14%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFP 129
           DF + D  G++V LS YKGK +++         +  +    L+ LY+++K  G+E+L   
Sbjct: 7   DFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGVEVLGVS 66

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
            +          E  ++FA  +    FP+    D +G+  A  Y  L   +G     +++
Sbjct: 67  VD--------SPESHKKFA-EKLGLPFPLL--SDPDGE-VAKAYGVLNEEEGL----ALR 110

Query: 190 WNFSKFLVDKEGNVVER 206
              + F++D +G +   
Sbjct: 111 ---TTFVIDPDGKIRYI 124

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 34/157 (21%)

Query: 52  FFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTEL 111
           FFA   D       K +  +F + D +G+ ++L   KGK + +    + C         +
Sbjct: 28  FFA---DKEKVQVGKEAP-NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYM 83

Query: 112 SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI-FDKVD--VNGDN 168
           ++LY KYK +G+EI+A         E      ++ F   R+   FP+  DK    ++   
Sbjct: 84  NELYPKYKEKGVEIIA-----VNVDET--ELAVKNFV-NRYGLTFPVAIDKGRQVIDAYG 135

Query: 169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE 205
             PL                    + FL+DK+G VV+
Sbjct: 136 VGPLP-------------------TTFLIDKDGKVVK 153

Length = 173

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 22/140 (15%)

Query: 71  DFSVKDA--KGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILA 127
           DF++ D    G+ V LS +KGK +++       C   ++ +  L +L   YK +G++++A
Sbjct: 7   DFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVA 66

Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
                        N     F    F A+  +  K  V  D      K       GL  D+
Sbjct: 67  V------------NASNDPFFVMNFWAKEGL--KYPVLADRDGAFTKAY-----GLTEDA 107

Query: 188 IKWNFSKFLVDKEGNVVERY 207
                  FL+D++G VV   
Sbjct: 108 GLRTPRYFLIDEDGKVVYLE 127

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	100.0
PLN02412	167	probable glutathione peroxidase	100.0
PTZ00056	199	glutathione peroxidase; Provisional	100.0
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.98
PTZ00256	183	glutathione peroxidase; Provisional	99.98
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.97
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.97
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	99.96
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.95
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.95
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	99.95
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.94
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.94
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.94
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.94
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.94
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.94
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.93
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.93
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.93
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.93
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.93
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.93
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.92
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.92
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.92
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.92
PRK13190	202	putative peroxiredoxin; Provisional	99.92
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.91
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.91
PRK13599	215	putative peroxiredoxin; Provisional	99.91
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.91
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.9
PRK13191	215	putative peroxiredoxin; Provisional	99.9
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.9
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.9
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.9
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.9
PRK15000	200	peroxidase; Provisional	99.89
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.89
PRK13189	222	peroxiredoxin; Provisional	99.89
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.89
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.89
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.89
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.89
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.87
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.87
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.87
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.84
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.84
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.83
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.82
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.81
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.81
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	99.76
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.75
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.69
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	99.68
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.67
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.64
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	99.63
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.62
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.6
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.6
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.59
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.59
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.58
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.55
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.55
PRK09381	109	trxA thioredoxin; Provisional	99.52
PHA02278	103	thioredoxin-like protein	99.51
PRK10996	139	thioredoxin 2; Provisional	99.5
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.49
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.48
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.48
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.45
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.43
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.43
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.43
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.42
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.42
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	99.41
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.41
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.41
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.39
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.39
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.38
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.38
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.37
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.36
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.34
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.33
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	99.33
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.33
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.32
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.32
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.31
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.31
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.28
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.28
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.28
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.27
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.26
PTZ00051	98	thioredoxin; Provisional	99.26
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.24
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.24
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.22
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.2
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.17
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.16
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.15
PTZ00102	477	disulphide isomerase; Provisional	99.12
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.12
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.08
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.06
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.04
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.02
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.02
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.97
PLN02309	457	5'-adenylylsulfate reductase	98.97
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.96
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	98.96
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.95
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.95
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.92
PTZ00102	477	disulphide isomerase; Provisional	98.88
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	98.84
PF13728	215	TraF: F plasmid transfer operon protein	98.83
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.81
PTZ00062	204	glutaredoxin; Provisional	98.81
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.8
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.76
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.66
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.64
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.64
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.56
PHA02125	75	thioredoxin-like protein	98.55
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.5
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	98.49
smart00594	122	UAS UAS domain.	98.48
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	98.46
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.43
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	98.36
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.35
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.3
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.3
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.17
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	98.17
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	98.08
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.08
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.02
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	97.99
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	97.99
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.95
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	97.88
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.87
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.78
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	97.73
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	97.58
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.52
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.42
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.37
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.34
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.3
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	97.22
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.17
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	97.12
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	97.1
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	97.05
KOG4277	468	consensus Uncharacterized conserved protein, conta	96.91
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.87
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	96.86
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.77
PRK11200	85	grxA glutaredoxin 1; Provisional	96.23
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.1
COG3054	184	Predicted transcriptional regulator [General funct	96.06
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	96.02
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	95.81
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	95.64
KOG4498	197	consensus Uncharacterized conserved protein [Funct	95.57
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.56
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.46
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	95.29
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	94.88
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	94.71
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	94.67
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	94.65
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	94.56
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	94.48
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	94.3
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	94.28
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	93.98
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	93.92
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	93.72
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.59
PHA03050	108	glutaredoxin; Provisional	93.51
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	93.26
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.23
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	92.83
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	92.52
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	92.37
PRK10329	81	glutaredoxin-like protein; Provisional	92.27
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	92.24
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	91.15
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	90.89
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	90.69
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	90.44
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	90.32
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	90.06
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	89.99
PRK10638	83	glutaredoxin 3; Provisional	88.77
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	88.61
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	88.46
COG1331	667	Highly conserved protein containing a thioredoxin	88.3
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	88.17
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	87.7
KOG4614	287	consensus Inner membrane protein required for asse	86.93
KOG1672	211	consensus ATP binding protein [Posttranslational m	86.44
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	86.26
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	86.07
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	85.22
PRK10824	115	glutaredoxin-4; Provisional	85.14
cd02979	167	PHOX_C FAD-dependent Phenol hydoxylase (PHOX) fami	84.37
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	82.92
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	82.43
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	82.14

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=100.00  E-value=4.1e-34  Score=226.36  Aligned_cols=163  Identities=69%  Similarity=1.172  Sum_probs=143.1

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ...|+.+|+|+++|.+|+.+++++++||++||+||++||++|..++|.|++++++|+++|++||+|+.|+++..++++.+
T Consensus        73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~  152 (236)
T PLN02399         73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  152 (236)
T ss_pred             hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999877667777889


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                      ++++|+.++++++||++.+.|..+....+.|+++....++..|..+.+.|++||||++|+|++++.|..+++++++.|++
T Consensus       153 ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~  232 (236)
T PLN02399        153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK  232 (236)
T ss_pred             HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence            99999866889999998666666766777787764443443343577889999999999999999999999999999999


Q ss_pred             hhC
Q 027311          223 LCC  225 (225)
Q Consensus       223 ll~  225 (225)
                      +|+
T Consensus       233 lL~  235 (236)
T PLN02399        233 LLA  235 (236)
T ss_pred             Hhc
Confidence            985

>PLN02412 probable glutathione peroxidase

Probab=100.00  E-value=7.4e-34  Score=216.01  Aligned_cols=161  Identities=72%  Similarity=1.159  Sum_probs=142.1

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI  144 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~  144 (225)
                      ..+.+|+|++++.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|++|++|+.|.+...++++.+++
T Consensus         5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~   84 (167)
T PLN02412          5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI   84 (167)
T ss_pred             cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999987665666678888


Q ss_pred             HHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      +++..++++++||++.+.|.++......|+++....++..+.++.+.|++||||++|+|++++.|..++++++..|+++|
T Consensus        85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l  164 (167)
T PLN02412         85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL  164 (167)
T ss_pred             HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            77765889999999976677776777788877665555555568889999999999999999999999999999999988


Q ss_pred             C
Q 027311          225 C  225 (225)
Q Consensus       225 ~  225 (225)
                      +
T Consensus       165 ~  165 (167)
T PLN02412        165 G  165 (167)
T ss_pred             h
Confidence            5

>PTZ00056 glutathione peroxidase; Provisional

Probab=100.00  E-value=3.6e-33  Score=217.52  Aligned_cols=161  Identities=39%  Similarity=0.695  Sum_probs=138.6

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      ..+..+|+|+++|.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|++||+|++|++..++.++.++
T Consensus        14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~   93 (199)
T PTZ00056         14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKD   93 (199)
T ss_pred             hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999998877777788999


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCC---C--CccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF---G--DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~--~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~  218 (225)
                      +++|+ ++++++||++.+.+.++.....+++++.......+   +  .++.+.|++||||++|+|++++.|..+++++++
T Consensus        94 ~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~  172 (199)
T PTZ00056         94 IRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEK  172 (199)
T ss_pred             HHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHH
Confidence            99999 78999999997776777777777766653222111   1  134555689999999999999999999999999


Q ss_pred             HHHhhhC
Q 027311          219 VLECLCC  225 (225)
Q Consensus       219 ~l~~ll~  225 (225)
                      .|+++|+
T Consensus       173 ~I~~ll~  179 (199)
T PTZ00056        173 KIAELLG  179 (199)
T ss_pred             HHHHHHH
Confidence            9999874

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.98  E-value=1.1e-31  Score=201.29  Aligned_cols=150  Identities=60%  Similarity=1.063  Sum_probs=121.3

Q ss_pred             ecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        69 ~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      +|+|+++|++|+.+++++++||++||+||++||| |+.++|.|++++++|+++|+++++|+.|.++..++++.+++++|+
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~   80 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC   80 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence            6899999999999999999999999999999999 999999999999999988999999998865555566789999999


Q ss_pred             HhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      .++++++||++.+.|..+......|+.+....++..++.+.+.|++||||++|+|++++.|..+++++++.
T Consensus        81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340          81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence            44479999998655555554455565433322222122445556999999999999999999988877654

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.98  E-value=2.5e-31  Score=205.09  Aligned_cols=162  Identities=42%  Similarity=0.733  Sum_probs=135.3

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ..+..+|+|+++|.+|+.+++++++||++ |+.+|++|||+|+.++|.|++++++|+++|+.|++|++|.+...++++.+
T Consensus        15 ~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~   94 (183)
T PTZ00256         15 PPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP   94 (183)
T ss_pred             CCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence            45678999999999999999999999964 55679999999999999999999999999999999998865555656778


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCC--CCCccccce---eEEEECCCCcEEEEcCCCCChhhHH
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL--FGDSIKWNF---SKFLVDKEGNVVERYAPTTSPLSIE  217 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~P---~~~lid~~G~I~~~~~g~~~~~~l~  217 (225)
                      ++.+|+.++++++||++.+.|.++....++|+++....+..  ..+++.++|   ++||||++|+|++++.|..++++++
T Consensus        95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~  174 (183)
T PTZ00256         95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMI  174 (183)
T ss_pred             HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHH
Confidence            89999866889999999777777777677887766543211  112566788   4699999999999999999999999


Q ss_pred             HHHHhhhC
Q 027311          218 VVLECLCC  225 (225)
Q Consensus       218 ~~l~~ll~  225 (225)
                      +.|+++|+
T Consensus       175 ~~I~~ll~  182 (183)
T PTZ00256        175 QDIEKLLN  182 (183)
T ss_pred             HHHHHHhc
Confidence            99999885

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.97  E-value=6.5e-31  Score=201.23  Aligned_cols=157  Identities=39%  Similarity=0.784  Sum_probs=142.0

Q ss_pred             ceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311           67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE  146 (225)
Q Consensus        67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~  146 (225)
                      ..+++|++.+++|+.++|++++||++||+||||||+.|. +++.|++++++|+++|++|++|+.++++.+++++.+++++
T Consensus         3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~   81 (183)
T PRK10606          3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT   81 (183)
T ss_pred             CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence            368999999999999999999999999999999999995 7999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcceeeeecCCCCCchhhhhhccccCCC--------------------CCCCccccceeEEEECCCCcEEEE
Q 027311          147 FACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG--------------------LFGDSIKWNFSKFLVDKEGNVVER  206 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~v~~~P~~~lid~~G~I~~~  206 (225)
                      |+.++++++||++.+.|..|...+.+|++++...+.                    ..+..|.|..+.||||++|+++.+
T Consensus        82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r  161 (183)
T PRK10606         82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR  161 (183)
T ss_pred             HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence            995579999999999999999999999999865431                    011268899999999999999999


Q ss_pred             cCCCCChhh--HHHHHHhhh
Q 027311          207 YAPTTSPLS--IEVVLECLC  224 (225)
Q Consensus       207 ~~g~~~~~~--l~~~l~~ll  224 (225)
                      +.+...+.+  +++.|+++|
T Consensus       162 ~~~~~~p~~~~i~~~i~~~l  181 (183)
T PRK10606        162 FSPDMTPEDPIVMESIKLAL  181 (183)
T ss_pred             ECCCCCCCHHHHHHHHHHHh
Confidence            999988877  999999887

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.97  E-value=1.8e-30  Score=195.00  Aligned_cols=148  Identities=39%  Similarity=0.714  Sum_probs=124.2

Q ss_pred             ecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        69 ~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      +.+|++.|++|+.+++++++||++||+||++|||+|..++|.|++++++|+++|+.|++|+.+.++..++++.+.+++|+
T Consensus         2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~   81 (153)
T TIGR02540         2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA   81 (153)
T ss_pred             cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999998766666667889999999


Q ss_pred             HhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCcccccee----EEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFS----KFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~----~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      +++++++||++.+.+..+......|++...        .....|+    +||||++|+|++++.|..+++++++.|++++
T Consensus        82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~--------~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~  153 (153)
T TIGR02540        82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVD--------SSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV  153 (153)
T ss_pred             HHhcCCCCCccceEecCCCCCCcHHHHHHh--------cCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence            445899999987654444444444544321        1123566    9999999999999999999999999999875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.4e-28  Score=175.96  Aligned_cols=158  Identities=58%  Similarity=1.014  Sum_probs=149.3

Q ss_pred             ceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311           67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE  146 (225)
Q Consensus        67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~  146 (225)
                      ..+.+|++++.+|++++|++++||++||.-.||.|+.-. +...|+.++++|+++|++|+++..+.+.+++|.+.+++++
T Consensus         3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~   81 (162)
T COG0386           3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK   81 (162)
T ss_pred             cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence            356899999999999999999999999999999999877 8899999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCcceeeeecCCCCCchhhhhhccccCCC-CCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          147 FACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG-LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      |+...|+.+||++..++..|.+.+.+|+++....++ ..+..|.|..+.||||++|+|+.|+.+...|++++..|+++|+
T Consensus        82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~  161 (162)
T COG0386          82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA  161 (162)
T ss_pred             HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence            999999999999999999999999999999987755 4556999999999999999999999999999999999999984

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.95  E-value=3.2e-28  Score=181.31  Aligned_cols=124  Identities=28%  Similarity=0.498  Sum_probs=104.9

Q ss_pred             CCCceecCeEEeC--CCCCeecCCccCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKD--AKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        64 ~~g~~~p~f~l~~--~~G~~~~l~~~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ++|+.+|+|++++  .+|+.+++++++||++||+||++ |||+|+.++|.+++++++|+++++.+++|+.+.        
T Consensus         1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~--------   72 (146)
T PF08534_consen    1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD--------   72 (146)
T ss_dssp             STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS--------
T ss_pred             CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC--------
Confidence            5899999999966  99999999999999999999999 999999999999999999999999999999883        


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc---------cceeEEEECCCCcEEEEcCCCC
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK---------WNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~P~~~lid~~G~I~~~~~g~~  211 (225)
                      ...+.+|+ ++++.+|+++  .|.+ ....+.|             ++.         ++|+++|||++|+|++++.|..
T Consensus        73 ~~~~~~~~-~~~~~~~~~~--~D~~-~~~~~~~-------------~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~  135 (146)
T PF08534_consen   73 DPPVREFL-KKYGINFPVL--SDPD-GALAKAL-------------GVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD  135 (146)
T ss_dssp             SHHHHHHH-HHTTTTSEEE--EETT-SHHHHHT-------------TCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred             CHHHHHHH-HhhCCCceEE--echH-HHHHHHh-------------CCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence            33488888 7789999998  4433 3333334             444         7999999999999999999977


Q ss_pred             C
Q 027311          212 S  212 (225)
Q Consensus       212 ~  212 (225)
                      +
T Consensus       136 ~  136 (146)
T PF08534_consen  136 P  136 (146)
T ss_dssp             T
T ss_pred             C
Confidence            6

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.95  E-value=1.3e-27  Score=184.76  Aligned_cols=135  Identities=19%  Similarity=0.225  Sum_probs=112.7

Q ss_pred             cCCCceecCeEEeCCCC--CeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKG--QDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G--~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+|+++|+|++.+++|  +.++++++ +||+++|+||++||++|+.++|.++++++    ++++|++|+.|+       
T Consensus        39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~-------  107 (185)
T PRK15412         39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKD-------  107 (185)
T ss_pred             hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------
Confidence            36799999999999984  67777765 89999999999999999999999988864    469999999874       


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      +.+++++|+ ++++.+|+.+. .|..+.. ...|             ++.++|++|+||++|+|++++.|..+.+++++.
T Consensus       108 ~~~~~~~~~-~~~~~~~~~~~-~D~~~~~-~~~~-------------gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~  171 (185)
T PRK15412        108 DRQKAISWL-KELGNPYALSL-FDGDGML-GLDL-------------GVYGAPETFLIDGNGIIRYRHAGDLNPRVWESE  171 (185)
T ss_pred             CHHHHHHHH-HHcCCCCceEE-EcCCccH-HHhc-------------CCCcCCeEEEECCCceEEEEEecCCCHHHHHHH
Confidence            678888998 78899998531 3444332 2233             888899999999999999999999999999999


Q ss_pred             HHhhh
Q 027311          220 LECLC  224 (225)
Q Consensus       220 l~~ll  224 (225)
                      |+.++
T Consensus       172 i~~~~  176 (185)
T PRK15412        172 IKPLW  176 (185)
T ss_pred             HHHHH
Confidence            98876

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.3e-27  Score=170.64  Aligned_cols=162  Identities=67%  Similarity=1.110  Sum_probs=154.9

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      .....+.+|+.+|.+|+.++|+.|+||++||.-.||.|+.-...-.+|++++++|+++|++|++...+.++.+||.+.++
T Consensus         9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E   88 (171)
T KOG1651|consen    9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE   88 (171)
T ss_pred             hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence            34567899999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      +..++..+++..||++..+|..|+..+.+|++++...++..|..|.|..+.||||++|.++.|+.+..++.+++..|++|
T Consensus        89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l  168 (171)
T KOG1651|consen   89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL  168 (171)
T ss_pred             HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence            99999899999999999999999999999999999999888889999999999999999999999999999999999999


Q ss_pred             hC
Q 027311          224 CC  225 (225)
Q Consensus       224 l~  225 (225)
                      |+
T Consensus       169 L~  170 (171)
T KOG1651|consen  169 LA  170 (171)
T ss_pred             hc
Confidence            85

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.6e-26  Score=169.26  Aligned_cols=148  Identities=19%  Similarity=0.332  Sum_probs=119.0

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      .+.+|+++|+|++.+++|+.++|++++||+|||+|| ..++|.|..|+..+++.++++++.|.+|+|||.|        +
T Consensus         3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s   74 (157)
T COG1225           3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S   74 (157)
T ss_pred             cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence            357999999999999999999999999999999998 8899999999999999999999999999999998        8


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCC-ccccceeEEEECCCCcEEEEcCCCCCh---hhH
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-SIKWNFSKFLVDKEGNVVERYAPTTSP---LSI  216 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~P~~~lid~~G~I~~~~~g~~~~---~~l  216 (225)
                      .+..++|+ ++++++|++++  |.++. ..+.|+.......  +|. -.-..+++||||++|+|++.+......   +++
T Consensus        75 ~~~~~~F~-~k~~L~f~LLS--D~~~~-v~~~ygv~~~k~~--~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~v  148 (157)
T COG1225          75 PKSHKKFA-EKHGLTFPLLS--DEDGE-VAEAYGVWGEKKM--YGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEV  148 (157)
T ss_pred             HHHHHHHH-HHhCCCceeeE--CCcHH-HHHHhCccccccc--CccccccccceEEEECCCCeEEEEecCCCCcccHHHH
Confidence            99999999 89999999995  44333 5566765543221  111 122357999999999999998544333   455


Q ss_pred             HHHHHhh
Q 027311          217 EVVLECL  223 (225)
Q Consensus       217 ~~~l~~l  223 (225)
                      .+.|+++
T Consensus       149 l~~l~~l  155 (157)
T COG1225         149 LAALKKL  155 (157)
T ss_pred             HHHHHHh
Confidence            5555554

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.94  E-value=1e-26  Score=168.18  Aligned_cols=123  Identities=25%  Similarity=0.491  Sum_probs=103.8

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      +|+++|+|++++.+|+.+++++++||++||.||++ |||.|..+++.|++++++++++|+++++|+.|        +.++
T Consensus         1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~   72 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE   72 (124)
T ss_dssp             TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred             CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence            69999999999999999999999999999999988 99999999999999999999999999999998        7788


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEE
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER  206 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~  206 (225)
                      ++++. ++++.+||++.  |.. ....+.|+.....       ....+|++||||++|+|+++
T Consensus        73 ~~~~~-~~~~~~~~~~~--D~~-~~~~~~~~~~~~~-------~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   73 IKQFL-EEYGLPFPVLS--DPD-GELAKAFGIEDEK-------DTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHHHH-HHHTCSSEEEE--ETT-SHHHHHTTCEETT-------TSEESEEEEEEETTSBEEEE
T ss_pred             hhhhh-hhhcccccccc--Ccc-hHHHHHcCCcccc-------CCceEeEEEEECCCCEEEeC
Confidence            89988 77789999984  433 3334444221110       12278999999999999975

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.94  E-value=5.3e-26  Score=170.82  Aligned_cols=147  Identities=18%  Similarity=0.255  Sum_probs=113.9

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ..+|+.+|+|++++.+|+.+++++++||++||+||++ |||.|..+++.+++++++++++|+++++|+.|        +.
T Consensus         4 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~~   75 (154)
T PRK09437          4 LKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------KP   75 (154)
T ss_pred             CCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CH
Confidence            4689999999999999999999999999999999976 78899999999999999999999999999987        67


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +++++|+ ++++.+|+++.  |..+. ..+.|+..........++. ...|++||||++|+|++.+.|....+.+.+.++
T Consensus        76 ~~~~~~~-~~~~~~~~~l~--D~~~~-~~~~~gv~~~~~~~~~~~~-~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~  150 (154)
T PRK09437         76 EKLSRFA-EKELLNFTLLS--DEDHQ-VAEQFGVWGEKKFMGKTYD-GIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD  150 (154)
T ss_pred             HHHHHHH-HHhCCCCeEEE--CCCch-HHHHhCCCccccccccccc-CcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence            8999998 77899999884  44433 3344533211100000000 013788999999999999998776666555554


Q ss_pred             h
Q 027311          222 C  222 (225)
Q Consensus       222 ~  222 (225)
                      .
T Consensus       151 ~  151 (154)
T PRK09437        151 Y  151 (154)
T ss_pred             H
Confidence            4

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.94  E-value=8.7e-26  Score=171.73  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=109.7

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccC-CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~tw-C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ...+|+.+|+|++.+.+|+.+++++++||++||+||++| ||+|..+++.|+++++++.  +++|++||.|        +
T Consensus        17 ~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~   86 (167)
T PRK00522         17 LPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------L   86 (167)
T ss_pred             CCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------C
Confidence            346899999999999999999999999999999999999 9999999999999999983  7999999988        6


Q ss_pred             HHHHHHHHHhhcCCC-cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC--CChhhHH
Q 027311          141 NEQIQEFACTRFKAE-FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT--TSPLSIE  217 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~--~~~~~l~  217 (225)
                      ....++|+ +++++. ++++  .|..+....+.|+...... ...  ++ ..|++||||++|+|++.+.+.  ....+++
T Consensus        87 ~~~~~~f~-~~~~~~~~~~l--sD~~~~~~~~~~gv~~~~~-~~~--g~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~  159 (167)
T PRK00522         87 PFAQKRFC-GAEGLENVITL--SDFRDHSFGKAYGVAIAEG-PLK--GL-LARAVFVLDENNKVVYSELVPEITNEPDYD  159 (167)
T ss_pred             HHHHHHHH-HhCCCCCceEe--ecCCccHHHHHhCCeeccc-ccC--Cc-eeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence            67788888 777887 6777  4534434455564321110 000  11 245999999999999998543  3334555


Q ss_pred             HHHHhh
Q 027311          218 VVLECL  223 (225)
Q Consensus       218 ~~l~~l  223 (225)
                      +.|+.|
T Consensus       160 ~~l~~l  165 (167)
T PRK00522        160 AALAAL  165 (167)
T ss_pred             HHHHHh
Confidence            555544

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.94  E-value=1e-25  Score=172.34  Aligned_cols=138  Identities=25%  Similarity=0.439  Sum_probs=122.1

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ...+|+.+|+|++.+.+|+.+++++++||+++|+||++||++|+.+++.++++++++++.++++++|+.|+       +.
T Consensus        34 ~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~~  106 (173)
T PRK03147         34 KVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------TE  106 (173)
T ss_pred             ccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------CH
Confidence            45789999999999999999999999999999999999999999999999999999998889999999985       77


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +++.+|. ++++.+|+++  .|..+. ..+.|             ++.++|++|+||++|+|+..+.|..+.+++.+.++
T Consensus       107 ~~~~~~~-~~~~~~~~~~--~d~~~~-~~~~~-------------~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~  169 (173)
T PRK03147        107 LAVKNFV-NRYGLTFPVA--IDKGRQ-VIDAY-------------GVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLE  169 (173)
T ss_pred             HHHHHHH-HHhCCCceEE--ECCcch-HHHHc-------------CCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence            8899998 8889999987  444433 33334             78889999999999999999999999999998887


Q ss_pred             hh
Q 027311          222 CL  223 (225)
Q Consensus       222 ~l  223 (225)
                      ++
T Consensus       170 ~~  171 (173)
T PRK03147        170 KI  171 (173)
T ss_pred             Hh
Confidence            65

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.94  E-value=6.2e-26  Score=167.63  Aligned_cols=138  Identities=23%  Similarity=0.396  Sum_probs=111.6

Q ss_pred             ceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHH
Q 027311           67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~  145 (225)
                      +.+|+|+++|.+|+.+++++++||++||+|| ++|||.|..+++.+++++++++++++++++|++|        +.++++
T Consensus         1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~   72 (140)
T cd03017           1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA   72 (140)
T ss_pred             CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence            3689999999999999999999999999999 5899999999999999999999889999999987        678899


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                      +|+ ++++.+|+++.  |.++. ..+.|+......+   + .....|++||||++|+|++.+.|....+.+.+.+
T Consensus        73 ~~~-~~~~~~~~~l~--D~~~~-~~~~~gv~~~~~~---~-~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017          73 KFA-EKYGLPFPLLS--DPDGK-LAKAYGVWGEKKK---K-YMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             HHH-HHhCCCceEEE--CCccH-HHHHhCCcccccc---c-cCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence            998 77899999884  44433 3344432211110   0 1122499999999999999999988777777665

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.93  E-value=8.9e-26  Score=172.75  Aligned_cols=135  Identities=18%  Similarity=0.193  Sum_probs=110.7

Q ss_pred             cCCCceecCeEEeCCCCC--eecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQ--DVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~--~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+|.++|+|++++.+|+  .++++++ +||+++|+||++||++|+.++|.++++++    +++++++|+.++       
T Consensus        34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~-------  102 (173)
T TIGR00385        34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYKD-------  102 (173)
T ss_pred             hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------
Confidence            468999999999999997  4554565 79999999999999999999999988764    469999999864       


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      +.++..+|+ ++++.+|+.+. .|..+. ..+.|             ++.++|++|+||++|+|++++.|..+.+++++.
T Consensus       103 ~~~~~~~~~-~~~~~~f~~v~-~D~~~~-~~~~~-------------~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~  166 (173)
T TIGR00385       103 QSQNALKFL-KELGNPYQAIL-IDPNGK-LGLDL-------------GVYGAPETFLVDGNGVILYRHAGPLNNEVWTEG  166 (173)
T ss_pred             ChHHHHHHH-HHcCCCCceEE-ECCCCc-hHHhc-------------CCeeCCeEEEEcCCceEEEEEeccCCHHHHHHH
Confidence            567777888 77888888431 354443 33333             778899999999999999999999999999999


Q ss_pred             HHhhh
Q 027311          220 LECLC  224 (225)
Q Consensus       220 l~~ll  224 (225)
                      |++++
T Consensus       167 l~~~~  171 (173)
T TIGR00385       167 FLPAM  171 (173)
T ss_pred             HHHHh
Confidence            98876

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.93  E-value=1.5e-25  Score=171.32  Aligned_cols=143  Identities=23%  Similarity=0.398  Sum_probs=118.3

Q ss_pred             CceecCeEEeCCCCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHH
Q 027311           66 KTSVHDFSVKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI  144 (225)
Q Consensus        66 g~~~p~f~l~~~~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~  144 (225)
                      |+.+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|++++++++++++++++|++|.....+.++.+++
T Consensus         1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~   80 (171)
T cd02969           1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM   80 (171)
T ss_pred             CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence            6789999999999999999998 999999999999999999999999999999998889999999985333333578999


Q ss_pred             HHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC---------CCCChhh
Q 027311          145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA---------PTTSPLS  215 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~---------g~~~~~~  215 (225)
                      ++++ ++++.+|+++.  |.++. ..+.|             ++..+|++||||++|+|+++..         +..+..+
T Consensus        81 ~~~~-~~~~~~~~~l~--D~~~~-~~~~~-------------~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~  143 (171)
T cd02969          81 KAKA-KEHGYPFPYLL--DETQE-VAKAY-------------GAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD  143 (171)
T ss_pred             HHHH-HHCCCCceEEE--CCchH-HHHHc-------------CCCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence            9999 78899999984  44432 33333             7778899999999999998742         1234567


Q ss_pred             HHHHHHhhhC
Q 027311          216 IEVVLECLCC  225 (225)
Q Consensus       216 l~~~l~~ll~  225 (225)
                      +.+.|+++|+
T Consensus       144 ~~~~i~~~l~  153 (171)
T cd02969         144 LRAALDALLA  153 (171)
T ss_pred             HHHHHHHHHc
Confidence            9999988873

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.93  E-value=1e-25  Score=163.90  Aligned_cols=123  Identities=18%  Similarity=0.202  Sum_probs=103.1

Q ss_pred             eecCeEEeCCCC--CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHH
Q 027311           68 SVHDFSVKDAKG--QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        68 ~~p~f~l~~~~G--~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~  145 (225)
                      ++|+|++.+++|  +.+++++++||++||+||++||++|+.++|.++++.+++   ++++++|+.++       +.+.++
T Consensus         2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~-------~~~~~~   71 (127)
T cd03010           2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKD-------NPENAL   71 (127)
T ss_pred             CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCC-------CHHHHH
Confidence            679999999999  889999999999999999999999999999999998775   39999999874       788999


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhH
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSI  216 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l  216 (225)
                      +|+ ++++..|+.+. .|..+. ..+.|             ++.++|++|+||++|+|++++.|..+.+.+
T Consensus        72 ~~~-~~~~~~~~~~~-~D~~~~-~~~~~-------------~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          72 AWL-ARHGNPYAAVG-FDPDGR-VGIDL-------------GVYGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             HHH-HhcCCCCceEE-ECCcch-HHHhc-------------CCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence            998 77888887431 343332 33334             788899999999999999999998876643

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.93  E-value=5.7e-25  Score=163.18  Aligned_cols=136  Identities=14%  Similarity=0.174  Sum_probs=105.3

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccC-CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~tw-C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      +|+.+|+|++.+.+|+.+++++++||++||+||++| ||+|+.+++.|++++++++  |+.+++||+|        +.+.
T Consensus         2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~   71 (143)
T cd03014           2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA   71 (143)
T ss_pred             CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence            689999999999999999999999999999999998 6999999999999999984  6999999987        6677


Q ss_pred             HHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--ChhhHHHHH
Q 027311          144 IQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--SPLSIEVVL  220 (225)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--~~~~l~~~l  220 (225)
                      +++|. ++++. .++++.  |.......+.|+......      ++ ..|++||||++|+|++.+.|..  ...++++.|
T Consensus        72 ~~~~~-~~~~~~~~~~l~--D~~~~~~~~~~gv~~~~~------~~-~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~  141 (143)
T cd03014          72 QKRWC-GAEGVDNVTTLS--DFRDHSFGKAYGVLIKDL------GL-LARAVFVIDENGKVIYVELVPEITDEPDYEAAL  141 (143)
T ss_pred             HHHHH-HhcCCCCceEee--cCcccHHHHHhCCeeccC------Cc-cceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence            78887 66675 788874  433233444553321110      11 2689999999999999988643  233555544

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.93  E-value=7.4e-25  Score=167.71  Aligned_cols=141  Identities=20%  Similarity=0.248  Sum_probs=106.5

Q ss_pred             CCceecCeEEeCCCC----CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           65 SKTSVHDFSVKDAKG----QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G----~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      +|+.+|+|++.+.+|    +.++|++++||++||+|| ++||++|..+++.|++++++|+++|+.+++||+|        
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d--------   72 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD--------   72 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence            589999999999988    789999999999999999 8999999999999999999999999999999987        


Q ss_pred             CHHHHHHHHHhh------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--
Q 027311          140 DNEQIQEFACTR------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--  211 (225)
Q Consensus       140 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--  211 (225)
                      +.+...+|....      .+.+|+++  .|..+. ..+.|+......      + ..+|++||||++|+|++++.+..  
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~-~~~~~gv~~~~~------~-~~~p~~~lID~~G~I~~~~~~~~~~  142 (173)
T cd03015          73 SHFSHLAWRNTPRKEGGLGKINFPLL--ADPKKK-ISRDYGVLDEEE------G-VALRGTFIIDPEGIIRHITVNDLPV  142 (173)
T ss_pred             CHHHHHHHHHhhhhhCCccCcceeEE--ECCchh-HHHHhCCccccC------C-ceeeEEEEECCCCeEEEEEecCCCC
Confidence            444555554221      45788888  454443 333453211100      0 14689999999999999996543  


Q ss_pred             --ChhhHHHHHHhh
Q 027311          212 --SPLSIEVVLECL  223 (225)
Q Consensus       212 --~~~~l~~~l~~l  223 (225)
                        +.+++.+.|+++
T Consensus       143 ~~~~~~il~~l~~~  156 (173)
T cd03015         143 GRSVDETLRVLDAL  156 (173)
T ss_pred             CCCHHHHHHHHHHh
Confidence              234566666544

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.93  E-value=4.5e-25  Score=164.73  Aligned_cols=130  Identities=18%  Similarity=0.343  Sum_probs=104.9

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCC-CEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~g-k~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      .+|+.+|+|++.+.+|+.+++++++| |++||.|| ++||+.|..+++.|++++++++++++++++|+.|        +.
T Consensus         2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~   73 (149)
T cd03018           2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP   73 (149)
T ss_pred             CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence            57999999999999999999999999 99998888 9999999999999999999999889999999987        67


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCC-CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVN-GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                      +.+++|+ ++++.+||++.  |.. .......|+......      + ...|++||||++|+|++++.|..
T Consensus        74 ~~~~~~~-~~~~~~~~~~~--D~~~~~~~~~~~g~~~~~~------~-~~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018          74 FSLRAWA-EENGLTFPLLS--DFWPHGEVAKAYGVFDEDL------G-VAERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             HHHHHHH-HhcCCCceEec--CCCchhHHHHHhCCccccC------C-CccceEEEECCCCEEEEEEecCC
Confidence            7888998 77899999884  432 022233342211000      1 12458999999999999998865

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.92  E-value=1.4e-24  Score=168.25  Aligned_cols=132  Identities=14%  Similarity=0.206  Sum_probs=104.5

Q ss_pred             ccCCCceecCeEEeCCCCCeecCC--ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLS--IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~--~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      +..+|+.+|+|+++|.+|+.++++  +++||+++|+||++|||+|+.++|.++++++++   ++.+++|+.|        
T Consensus        45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~--------  113 (189)
T TIGR02661        45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG--------  113 (189)
T ss_pred             CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------
Confidence            357999999999999999999995  579999999999999999999999999988653   4778888854        


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      +.+++++|+ ++++++++.+.   .+ ....+.|             ++..+|++|+||++|+|+++.. ....+++++.
T Consensus       114 ~~~~~~~~~-~~~~~~~~~~~---~~-~~i~~~y-------------~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~l  174 (189)
T TIGR02661       114 TPAEHRRFL-KDHELGGERYV---VS-AEIGMAF-------------QVGKIPYGVLLDQDGKIRAKGL-TNTREHLESL  174 (189)
T ss_pred             CHHHHHHHH-HhcCCCcceee---ch-hHHHHhc-------------cCCccceEEEECCCCeEEEccC-CCCHHHHHHH
Confidence            678889998 77888877542   22 2233333             7888999999999999998743 2345567666


Q ss_pred             HHhh
Q 027311          220 LECL  223 (225)
Q Consensus       220 l~~l  223 (225)
                      ++.+
T Consensus       175 l~~l  178 (189)
T TIGR02661       175 LEAD  178 (189)
T ss_pred             HHHH
Confidence            6654

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.92  E-value=5.9e-25  Score=159.73  Aligned_cols=113  Identities=20%  Similarity=0.307  Sum_probs=95.3

Q ss_pred             CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 027311           79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI  158 (225)
Q Consensus        79 G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (225)
                      |+.+++++++||++||+||++||++|+.++|.|++++++++++++.+++|+.+++.  .+++.+++++|+ ++++++||+
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~--~~~~~~~~~~~~-~~~~~~~p~   89 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA--FERDLANVKSAV-LRYGITYPV   89 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc--cccCHHHHHHHH-HHcCCCCCE
Confidence            57899999999999999999999999999999999999999889999999875422  224788999998 788999998


Q ss_pred             eeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          159 FDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       159 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                      +.  |.++. ....|             ++.++|++||||++|+|++++.|.
T Consensus        90 ~~--D~~~~-~~~~~-------------~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          90 AN--DNDYA-TWRAY-------------GNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             EE--CCchH-HHHHh-------------CCCcCCeEEEECCCCcEEEEEecC
Confidence            83  44332 22233             788899999999999999999884

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.92  E-value=3.7e-25  Score=163.08  Aligned_cols=107  Identities=11%  Similarity=0.159  Sum_probs=85.1

Q ss_pred             CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-------CeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 027311           80 QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-------GLEILAFPCNQFGAQEPGDNEQIQEFACTRF  152 (225)
Q Consensus        80 ~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-------~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~  152 (225)
                      +.+++++++||+++|+|||||||+|+.++|.|++++++++++       ++++|+||.|.       +.+++++|+ ++.
T Consensus        16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~-~~~   87 (146)
T cd03008          16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFL-KDM   87 (146)
T ss_pred             ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHH-HHC
Confidence            456788999999999999999999999999999999988653       69999999885       667788998 777


Q ss_pred             CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311          153 KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY  207 (225)
Q Consensus       153 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~  207 (225)
                      +++|+.+...+..+......|             ++.++|++||||++|+|+++.
T Consensus        88 ~~~~~~~p~~~~~~~~l~~~y-------------~v~~iPt~vlId~~G~Vv~~~  129 (146)
T cd03008          88 PKKWLFLPFEDEFRRELEAQF-------------SVEELPTVVVLKPDGDVLAAN  129 (146)
T ss_pred             CCCceeecccchHHHHHHHHc-------------CCCCCCEEEEECCCCcEEeeC
Confidence            877755421222112233333             888999999999999999873

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>TIGR03137 AhpC peroxiredoxin

Probab=99.92  E-value=1.3e-24  Score=168.22  Aligned_cols=140  Identities=16%  Similarity=0.213  Sum_probs=104.8

Q ss_pred             CCCceecCeEEeC-CCCC--eecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKD-AKGQ--DVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~l~~-~~G~--~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      .+|+.+|+|++.+ .+|+  .+++++++||++||+|| ++||++|..+++.|++++++++++|++|++||+|        
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D--------   74 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD--------   74 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence            5799999999998 5776  68888999999999999 9999999999999999999999889999999998        


Q ss_pred             CHHHHHHHHHh---hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----C
Q 027311          140 DNEQIQEFACT---RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----S  212 (225)
Q Consensus       140 ~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~  212 (225)
                      +.+..++|...   ..+++||++.  |.++ ...+.|+......      + .+.|++||||++|+|++.+.+..    +
T Consensus        75 ~~~~~~~~~~~~~~~~~l~fplls--D~~~-~~a~~~gv~~~~~------g-~~~p~tfiID~~G~I~~~~~~~~~~~~~  144 (187)
T TIGR03137        75 THFVHKAWHDTSEAIGKITYPMLG--DPTG-VLTRNFGVLIEEA------G-LADRGTFVIDPEGVIQAVEITDNGIGRD  144 (187)
T ss_pred             CHHHHHHHHhhhhhccCcceeEEE--CCcc-HHHHHhCCcccCC------C-ceeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence            55666666522   1367888884  4433 3444453321100      1 14699999999999999876433    3


Q ss_pred             hhhHHHHHH
Q 027311          213 PLSIEVVLE  221 (225)
Q Consensus       213 ~~~l~~~l~  221 (225)
                      .+++.+.|+
T Consensus       145 ~~~ll~~l~  153 (187)
T TIGR03137       145 ASELLRKIK  153 (187)
T ss_pred             HHHHHHHHH
Confidence            344544443

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.92  E-value=2.5e-24  Score=168.38  Aligned_cols=142  Identities=22%  Similarity=0.353  Sum_probs=108.1

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      .+|+.+|+|++.+.+| .+++++++||++|| +||++|||+|..|++.|++++++++++|+++++||+|        +.+
T Consensus         3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~~   73 (202)
T PRK13190          3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SIY   73 (202)
T ss_pred             CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence            6899999999999988 69999999998776 6899999999999999999999999999999999998        555


Q ss_pred             HHHHHHH---hhcC--CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc----CCCCCh
Q 027311          143 QIQEFAC---TRFK--AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY----APTTSP  213 (225)
Q Consensus       143 ~~~~~~~---~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~----~g~~~~  213 (225)
                      ...+|+.   ++++  ++||++.  |.++. ..+.|+.+....      + ..+|++||||++|+|++..    .+..+.
T Consensus        74 ~~~~w~~~~~~~~g~~~~fPll~--D~~~~-ia~~ygv~~~~~------g-~~~p~~fiId~~G~I~~~~~~~~~~gr~~  143 (202)
T PRK13190         74 SHIAWLRDIEERFGIKIPFPVIA--DIDKE-LAREYNLIDENS------G-ATVRGVFIIDPNQIVRWMIYYPAETGRNI  143 (202)
T ss_pred             HHHHHHHhHHHhcCCCceEEEEE--CCChH-HHHHcCCccccC------C-cEEeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence            5555542   3455  5799884  54443 344554322111      1 2479999999999999876    223356


Q ss_pred             hhHHHHHHhhh
Q 027311          214 LSIEVVLECLC  224 (225)
Q Consensus       214 ~~l~~~l~~ll  224 (225)
                      +++.+.|+++.
T Consensus       144 ~ellr~l~~l~  154 (202)
T PRK13190        144 DEIIRITKALQ  154 (202)
T ss_pred             HHHHHHHHHhh
Confidence            67777777653

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.91  E-value=4.3e-24  Score=185.65  Aligned_cols=139  Identities=19%  Similarity=0.203  Sum_probs=112.8

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ...++.+|+|++.|.+|+.++++  +||++||+|||+||++|+.++|.|++++++++.+++.||+|+++....  .++.+
T Consensus        32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~--e~~~~  107 (521)
T PRK14018         32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLH--EKKDG  107 (521)
T ss_pred             ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccc--cccHH
Confidence            46778999999999999999998  799999999999999999999999999999987789999999864221  22566


Q ss_pred             HHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          143 QIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       143 ~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +++++. +..+. .+|++  .|..+. ..+.|             ++.++|+++|||++|+|+.+..|..+.+++++.|+
T Consensus       108 ~~~~~~-~~~~y~~~pV~--~D~~~~-lak~f-------------gV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        108 DFQKWY-AGLDYPKLPVL--TDNGGT-LAQSL-------------NISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHHHHH-HhCCCccccee--ccccHH-HHHHc-------------CCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence            777777 44333 45666  343332 22233             88999999999999999999999999999988887


Q ss_pred             h
Q 027311          222 C  222 (225)
Q Consensus       222 ~  222 (225)
                      .
T Consensus       171 ~  171 (521)
T PRK14018        171 N  171 (521)
T ss_pred             H
Confidence            3

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.91  E-value=9.5e-24  Score=150.55  Aligned_cols=110  Identities=14%  Similarity=0.239  Sum_probs=92.1

Q ss_pred             cCeEEeCCCCCeecCCccC-CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           70 HDFSVKDAKGQDVDLSIYK-GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        70 p~f~l~~~~G~~~~l~~~~-gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      |+|++++.+|+.+++++++ ||++||+||++||++|+.++|.++++++++++ ++.+++++ |.       +.++..+++
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~~-------~~~~~~~~~   71 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-DG-------EKAEHQRFL   71 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-CC-------CHHHHHHHH
Confidence            7899999999999999997 99999999999999999999999999998865 48888876 42       678888888


Q ss_pred             HhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311          149 CTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY  207 (225)
Q Consensus       149 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~  207 (225)
                       +++++ .+|.+.  +   ....+.|             ++.++|++||||++|+|+++.
T Consensus        72 -~~~~~~~~p~~~--~---~~~~~~~-------------~~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          72 -KKHGLEAFPYVL--S---AELGMAY-------------QVSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             -HHhCCCCCcEEe--c---HHHHhhc-------------CCCCcCeEEEECCCCeEEecc
Confidence             77787 488762  2   1233334             788899999999999998764

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.91  E-value=1.4e-23  Score=165.11  Aligned_cols=143  Identities=16%  Similarity=0.202  Sum_probs=108.7

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      .+|+.+|+|++.+++|+...+++++||++ |++||++|||+|..|++.+++++++|+++|+++++||+|        +..
T Consensus         3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~   74 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF   74 (215)
T ss_pred             CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence            58999999999999999888899999985 578999999999999999999999999999999999998        444


Q ss_pred             HHH---HHHHh--hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----Ch
Q 027311          143 QIQ---EFACT--RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----SP  213 (225)
Q Consensus       143 ~~~---~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~~  213 (225)
                      ...   +++++  ..+++||++.  |.++. ..+.|+.+....      +....|++||||++|+|++.+....    +.
T Consensus        75 ~~~~w~~~i~~~~~~~i~fPil~--D~~~~-va~~yg~~~~~~------~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~  145 (215)
T PRK13599         75 SHIKWVEWIKDNTNIAIPFPVIA--DDLGK-VSNQLGMIHPGK------GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNV  145 (215)
T ss_pred             HHHHHHHhHHHhcCCCCceeEEE--CCCch-HHHHcCCCccCC------CCceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence            444   44422  3478899984  54443 445565432211      2235799999999999999864222    34


Q ss_pred             hhHHHHHHhh
Q 027311          214 LSIEVVLECL  223 (225)
Q Consensus       214 ~~l~~~l~~l  223 (225)
                      +++.+.|++|
T Consensus       146 ~eilr~l~~l  155 (215)
T PRK13599        146 DEILRALKAL  155 (215)
T ss_pred             HHHHHHHHHh
Confidence            5666666654

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.91  E-value=5.5e-24  Score=157.57  Aligned_cols=137  Identities=19%  Similarity=0.262  Sum_probs=104.5

Q ss_pred             eecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCC-ChHhHHHHHHHHHHHhcCC---eEEEEEecCCCCCCCCCCHHH
Q 027311           68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKNQG---LEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        68 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~-C~~~~~~l~~l~~~~~~~~---~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      .+|+|++.+.+|+.+++++++||++||.||++||+. |..+++.++++++++++++   +++++|+.|.    ..++.+.
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~   76 (142)
T cd02968           1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV   76 (142)
T ss_pred             CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence            379999999999999999999999999999999996 9999999999999998764   9999999973    3357788


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccC-CCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-GGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                      +++|+ ++++.+|+++.+.+.......+.|+...... .+..++++.+.|.+||||++|+|++++.+
T Consensus        77 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~  142 (142)
T cd02968          77 LKAYA-KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG  142 (142)
T ss_pred             HHHHH-HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence            99998 7778899988432211122333343222111 11112245667899999999999998754

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.90  E-value=3.3e-23  Score=159.54  Aligned_cols=142  Identities=10%  Similarity=0.210  Sum_probs=109.4

Q ss_pred             CCCceecCeEEeCC-CC--CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDA-KG--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~l~~~-~G--~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      .+|+++|+|+.... +|  .+++|++++||++||+|| ++|||+|..|++.+++++++++++|+++++||.|        
T Consensus         3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D--------   74 (187)
T PRK10382          3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD--------   74 (187)
T ss_pred             ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC--------
Confidence            68999999998874 34  567888999999999999 9999999999999999999999999999999998        


Q ss_pred             CHHHHHHHHHhh---cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----C
Q 027311          140 DNEQIQEFACTR---FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----S  212 (225)
Q Consensus       140 ~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~  212 (225)
                      +....++|..+.   .+++||+++  |.+ ....+.|+.+....      ++ ..|++||||++|+|++.+....    +
T Consensus        75 ~~~~~~a~~~~~~~~~~l~fplls--D~~-~~ia~~ygv~~~~~------g~-~~r~tfIID~~G~I~~~~~~~~~~~~~  144 (187)
T PRK10382         75 THFTHKAWHSSSETIAKIKYAMIG--DPT-GALTRNFDNMREDE------GL-ADRATFVVDPQGIIQAIEVTAEGIGRD  144 (187)
T ss_pred             CHHHHHHHHHhhccccCCceeEEE--cCc-hHHHHHcCCCcccC------Cc-eeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence            778888887332   478999994  443 44555665432110      11 2499999999999999865432    4


Q ss_pred             hhhHHHHHHhh
Q 027311          213 PLSIEVVLECL  223 (225)
Q Consensus       213 ~~~l~~~l~~l  223 (225)
                      .+++.+.|+++
T Consensus       145 ~~eil~~l~al  155 (187)
T PRK10382        145 ASDLLRKIKAA  155 (187)
T ss_pred             HHHHHHHHHhh
Confidence            45666666554

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.90  E-value=6.9e-23  Score=161.34  Aligned_cols=143  Identities=17%  Similarity=0.290  Sum_probs=105.7

Q ss_pred             cCCCceecCeEEeCCCCCeecC-CccCCCEEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDL-SIYKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l-~~~~gk~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      +.+|+.+|+|++.+.+|+ +.+ ++++||++|| +||++||++|..|++.|++++++|+++|++|++||+|        +
T Consensus         7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s   77 (215)
T PRK13191          7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------S   77 (215)
T ss_pred             ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------C
Confidence            468999999999999997 555 5589997776 7889999999999999999999999999999999998        4


Q ss_pred             HHHHHHH---HHh--hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----
Q 027311          141 NEQIQEF---ACT--RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----  211 (225)
Q Consensus       141 ~~~~~~~---~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----  211 (225)
                      ....++|   ..+  ..+++||+++  |.++. ..+.|+.+....      .....|++||||++|+|++...+..    
T Consensus        78 ~~~h~aw~~~~~~~~~~~i~fPlls--D~~~~-ia~~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr  148 (215)
T PRK13191         78 NISHIEWVMWIEKNLKVEVPFPIIA--DPMGN-VAKRLGMIHAES------STATVRAVFIVDDKGTVRLILYYPMEIGR  148 (215)
T ss_pred             HHHHHHHHhhHHHhcCCCCceEEEE--CCchH-HHHHcCCccccc------CCceeEEEEEECCCCEEEEEEecCCCCCC
Confidence            5544444   422  2468899984  54433 444565432211      1234799999999999999865433    


Q ss_pred             ChhhHHHHHHhh
Q 027311          212 SPLSIEVVLECL  223 (225)
Q Consensus       212 ~~~~l~~~l~~l  223 (225)
                      +.+++.+.|+++
T Consensus       149 ~~~eilr~l~al  160 (215)
T PRK13191        149 NIDEILRAIRAL  160 (215)
T ss_pred             CHHHHHHHHHHh
Confidence            345666666554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.90  E-value=2e-23  Score=196.74  Aligned_cols=143  Identities=17%  Similarity=0.205  Sum_probs=120.2

Q ss_pred             cCCCceecCeEEeC--CCCCeecC-CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKD--AKGQDVDL-SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~l~~--~~G~~~~l-~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ...|+.+|+|...+  .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|+++++.|++|+.+.++  +++
T Consensus       391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D--~~~  468 (1057)
T PLN02919        391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFD--NEK  468 (1057)
T ss_pred             cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccc--ccc
Confidence            46799999999876  68999998 58999999999999999999999999999999999889999999865332  223


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      +.+++++++ ++++++||++  .|..+. ....|             ++.++|+++|||++|+|++++.|....+++++.
T Consensus       469 ~~~~~~~~~-~~~~i~~pvv--~D~~~~-~~~~~-------------~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~  531 (1057)
T PLN02919        469 DLEAIRNAV-LRYNISHPVV--NDGDMY-LWREL-------------GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDL  531 (1057)
T ss_pred             cHHHHHHHH-HHhCCCccEE--ECCchH-HHHhc-------------CCCccceEEEECCCCeEEEEEecccCHHHHHHH
Confidence            567888888 7889999988  343332 22222             889999999999999999999999888899998


Q ss_pred             HHhhh
Q 027311          220 LECLC  224 (225)
Q Consensus       220 l~~ll  224 (225)
                      |++++
T Consensus       532 l~~~l  536 (1057)
T PLN02919        532 VEAAL  536 (1057)
T ss_pred             HHHHH
Confidence            88765

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.90  E-value=4.5e-23  Score=161.52  Aligned_cols=142  Identities=15%  Similarity=0.240  Sum_probs=104.6

Q ss_pred             CCceecCeEEeCCCCCeecCCccCC-CEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKG-KLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~g-k~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      +|+.+|+|++.+.+| .+++++++| |++ |++||++|||.|..+++.|++++++++++|+++++||+|        +.+
T Consensus         1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~   71 (203)
T cd03016           1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE   71 (203)
T ss_pred             CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence            488999999999998 489999998 765 457889999999999999999999999999999999998        555


Q ss_pred             HHHHHHHh-----hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----Ch
Q 027311          143 QIQEFACT-----RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----SP  213 (225)
Q Consensus       143 ~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~~  213 (225)
                      ..++|..+     +.+++||++.  |.++ ...+.|+......    + .-...|++||||++|+|++.+.+..    +.
T Consensus        72 ~~~~~~~~i~~~~~~~~~fpil~--D~~~-~ia~~yg~~~~~~----~-~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~  143 (203)
T cd03016          72 SHIKWIEDIEEYTGVEIPFPIIA--DPDR-EVAKLLGMIDPDA----G-STLTVRAVFIIDPDKKIRLILYYPATTGRNF  143 (203)
T ss_pred             HHHHHHhhHHHhcCCCCceeEEE--CchH-HHHHHcCCccccC----C-CCceeeEEEEECCCCeEEEEEecCCCCCCCH
Confidence            55555411     1688999984  4443 2344454332110    0 1123578999999999999876543    34


Q ss_pred             hhHHHHHHhh
Q 027311          214 LSIEVVLECL  223 (225)
Q Consensus       214 ~~l~~~l~~l  223 (225)
                      +++.+.|+++
T Consensus       144 ~ell~~l~~l  153 (203)
T cd03016         144 DEILRVVDAL  153 (203)
T ss_pred             HHHHHHHHHH
Confidence            5666666654

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.90  E-value=6.6e-24  Score=161.69  Aligned_cols=136  Identities=18%  Similarity=0.202  Sum_probs=101.9

Q ss_pred             cccccCCCceecCeEEeCC-----CC-----CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEE---
Q 027311           59 HTMASQSKTSVHDFSVKDA-----KG-----QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI---  125 (225)
Q Consensus        59 ~~~~~~~g~~~p~f~l~~~-----~G-----~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~i---  125 (225)
                      .+.....|+++|..++.+-     +|     +.++.++++||+.||+|||+||++|+.+.|.|.++    +++|+.+   
T Consensus        19 ~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y   94 (184)
T TIGR01626        19 WAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKY   94 (184)
T ss_pred             hhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccc
Confidence            3345678889998877764     44     45667788999999999999999999999999999    3456888   


Q ss_pred             ---EEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc---eeeeecCCCCCchhhhhhccccCCCCCCCccccceeE-EEEC
Q 027311          126 ---LAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP---IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSK-FLVD  198 (225)
Q Consensus       126 ---v~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~-~lid  198 (225)
                         ++||.|+   ...+...-++.|+ ++.+..||   ++  .|..+. ....|             ++.++|++ ||||
T Consensus        95 ~~t~~IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vl--lD~~g~-v~~~~-------------gv~~~P~T~fVID  154 (184)
T TIGR01626        95 QTTTIINADD---AIVGTGMFVKSSA-KKGKKENPWSQVV--LDDKGA-VKNAW-------------QLNSEDSAIIVLD  154 (184)
T ss_pred             cceEEEECcc---chhhHHHHHHHHH-HHhcccCCcceEE--ECCcch-HHHhc-------------CCCCCCceEEEEC
Confidence               9999885   1111223355555 66677888   55  454443 23333             88999888 8999


Q ss_pred             CCCcEEEEcCCCCChhhHHH
Q 027311          199 KEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       199 ~~G~I~~~~~g~~~~~~l~~  218 (225)
                      ++|+|++++.|..+.+++++
T Consensus       155 k~GkVv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       155 KTGKVKFVKEGALSDSDIQT  174 (184)
T ss_pred             CCCcEEEEEeCCCCHHHHHH
Confidence            99999999999988876655

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.90  E-value=6.8e-23  Score=151.26  Aligned_cols=129  Identities=19%  Similarity=0.339  Sum_probs=103.4

Q ss_pred             eecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311           68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE  146 (225)
Q Consensus        68 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~  146 (225)
                      .+|+|++.|.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.++.+++|+.|        +.+.+++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~   72 (140)
T cd02971           1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA   72 (140)
T ss_pred             CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence            379999999999999999999999999999 7899999999999999999998888999999987        6778888


Q ss_pred             HHHhhc-CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC
Q 027311          147 FACTRF-KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS  212 (225)
Q Consensus       147 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~  212 (225)
                      |. +++ +.+|+++.  |..+ ...+.|+.......   + +....|++||||++|+|++++.|...
T Consensus        73 ~~-~~~~~~~~~~l~--D~~~-~~~~~~g~~~~~~~---~-~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971          73 WA-EKEGGLNFPLLS--DPDG-EFAKAYGVLIEKSA---G-GGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             HH-hcccCCCceEEE--CCCh-HHHHHcCCcccccc---c-cCceeEEEEEECCCCcEEEEEecCCC
Confidence            88 666 88999884  4443 23333432211100   1 12346899999999999999998765

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK15000 peroxidase; Provisional

Probab=99.89  E-value=8.6e-23  Score=159.24  Aligned_cols=142  Identities=13%  Similarity=0.221  Sum_probs=104.0

Q ss_pred             CCCceecCeEEeCCCC--C---eecCCcc-CCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKG--Q---DVDLSIY-KGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ  136 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G--~---~~~l~~~-~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~  136 (225)
                      .+|+.+|+|++.+..|  +   .++++++ +||++||+||++ ||++|..|++.|++++++|+++|++|++||+|     
T Consensus         3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D-----   77 (200)
T PRK15000          3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD-----   77 (200)
T ss_pred             cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            4799999999998744  4   3466666 899999999984 99999999999999999999999999999998     


Q ss_pred             CCCCHHHHHHHH---HhhcC---CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          137 EPGDNEQIQEFA---CTRFK---AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       137 ~~~~~~~~~~~~---~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                         +....++|.   .++.+   ++||+++  |.++. ..+.|+......      ++ ++|++||||++|+|++.+.+.
T Consensus        78 ---~~~~~~~w~~~~~~~~g~~~i~fplls--D~~~~-ia~~ygv~~~~~------g~-~~r~tfiID~~G~I~~~~~~~  144 (200)
T PRK15000         78 ---SEFVHNAWRNTPVDKGGIGPVKYAMVA--DVKRE-IQKAYGIEHPDE------GV-ALRGSFLIDANGIVRHQVVND  144 (200)
T ss_pred             ---CHHHHHHHHhhHHHhCCccccCceEEE--CCCcH-HHHHcCCccCCC------Cc-EEeEEEEECCCCEEEEEEecC
Confidence               555555553   12333   5899984  54433 444554322111      11 579999999999999987765


Q ss_pred             CC----hhhHHHHHHhh
Q 027311          211 TS----PLSIEVVLECL  223 (225)
Q Consensus       211 ~~----~~~l~~~l~~l  223 (225)
                      ..    .+++.+.|+++
T Consensus       145 ~~~gr~~~eilr~l~al  161 (200)
T PRK15000        145 LPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            43    34555555543

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.89  E-value=1.4e-22  Score=162.64  Aligned_cols=145  Identities=16%  Similarity=0.182  Sum_probs=108.2

Q ss_pred             ccccCCCceecCeEEeC-CCCC--eecCCcc-CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCC
Q 027311           60 TMASQSKTSVHDFSVKD-AKGQ--DVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFG  134 (225)
Q Consensus        60 ~~~~~~g~~~p~f~l~~-~~G~--~~~l~~~-~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~  134 (225)
                      .....+|+.+|+|++.+ .+|+  .++++++ +||++|++|| ++|||+|..|++.+++++++++++|++|++||+|   
T Consensus        65 ~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D---  141 (261)
T PTZ00137         65 VTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD---  141 (261)
T ss_pred             cccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC---
Confidence            34458999999999988 4664  6899998 8998888877 8999999999999999999999999999999998   


Q ss_pred             CCCCCCHHHHHHHHHh------hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311          135 AQEPGDNEQIQEFACT------RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~  208 (225)
                           +....++|...      ..+++||++.  |.+ ....+.|+.+...       + ...|++||||++|+|++.+.
T Consensus       142 -----s~~~h~aw~~~~~~~~g~~~l~fPlLs--D~~-~~iakayGv~~~~-------g-~a~R~tFIID~dG~I~~~~~  205 (261)
T PTZ00137        142 -----SPFSHKAWKELDVRQGGVSPLKFPLFS--DIS-REVSKSFGLLRDE-------G-FSHRASVLVDKAGVVKHVAV  205 (261)
T ss_pred             -----CHHHHHHHHhhhhhhccccCcceEEEE--cCC-hHHHHHcCCCCcC-------C-ceecEEEEECCCCEEEEEEE
Confidence                 55555555421      2578899994  443 3344555432110       1 24799999999999999874


Q ss_pred             CCC----ChhhHHHHHHhh
Q 027311          209 PTT----SPLSIEVVLECL  223 (225)
Q Consensus       209 g~~----~~~~l~~~l~~l  223 (225)
                      ...    +.+++.+.|+.+
T Consensus       206 ~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        206 YDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             eCCCCCCCHHHHHHHHHHh
Confidence            322    445666666554

>PRK13189 peroxiredoxin; Provisional

Probab=99.89  E-value=1.8e-22  Score=159.76  Aligned_cols=143  Identities=18%  Similarity=0.309  Sum_probs=105.9

Q ss_pred             cCCCceecCeEEeCCCCCeecCCc-cCCCEEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSI-YKGKLLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~-~~gk~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      +.+|+.+|+|++.+.+|+ +++++ ++||+++| +||++|||+|..|++.|++++++|+++|++|++||+|        +
T Consensus         9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~   79 (222)
T PRK13189          9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------Q   79 (222)
T ss_pred             ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------C
Confidence            468999999999999985 77877 49996654 7789999999999999999999999999999999998        5


Q ss_pred             HHHHHHHHH---hh--cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----
Q 027311          141 NEQIQEFAC---TR--FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----  211 (225)
Q Consensus       141 ~~~~~~~~~---~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----  211 (225)
                      .....+|..   ++  .+++||++.  |.++ ...+.|+.+....      +-...|++||||++|+|++...+..    
T Consensus        80 ~~~h~aw~~~~~~~~g~~i~fPlls--D~~~-~ia~~ygv~~~~~------~~~~~r~tfIID~~G~Ir~~~~~~~~~gr  150 (222)
T PRK13189         80 VFSHIKWVEWIKEKLGVEIEFPIIA--DDRG-EIAKKLGMISPGK------GTNTVRAVFIIDPKGIIRAILYYPQEVGR  150 (222)
T ss_pred             HHHHHHHHHhHHHhcCcCcceeEEE--cCcc-HHHHHhCCCcccc------CCCceeEEEEECCCCeEEEEEecCCCCCC
Confidence            555555542   22  257899884  4443 3444564432111      1115799999999999998865433    


Q ss_pred             ChhhHHHHHHhh
Q 027311          212 SPLSIEVVLECL  223 (225)
Q Consensus       212 ~~~~l~~~l~~l  223 (225)
                      +.+++.+.|+++
T Consensus       151 ~~~eilr~l~al  162 (222)
T PRK13189        151 NMDEILRLVKAL  162 (222)
T ss_pred             CHHHHHHHHHHh
Confidence            345676666654

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.89  E-value=6.5e-23  Score=152.83  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=97.3

Q ss_pred             eecCeEEeCCCCCeecCCccC-CCEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHH
Q 027311           68 SVHDFSVKDAKGQDVDLSIYK-GKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        68 ~~p~f~l~~~~G~~~~l~~~~-gk~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~  145 (225)
                      .+|+|+++|.+|+.++++++. +|++ |++||++|||+|+.+++.|++++++++++|+++++|+.|        +.+...
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~   72 (149)
T cd02970           1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE   72 (149)
T ss_pred             CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence            379999999999999999974 4555 555569999999999999999999999889999999987        456666


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhccccC----------------CCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK----------------GGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                      +|. ++++.+||++.  |.++. ..+.|+......                .+..+.....+|++||||++|+|++.+.|
T Consensus        73 ~~~-~~~~~~~p~~~--D~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970          73 AFD-KGKFLPFPVYA--DPDRK-LYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             HHH-HhcCCCCeEEE--CCchh-HHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence            777 78899999984  54433 233333221110                00011134468999999999999999876

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.89  E-value=1.1e-22  Score=154.08  Aligned_cols=120  Identities=16%  Similarity=0.250  Sum_probs=95.4

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      .+....|+|++.  +|+.+++++++    ||+||++|||+|++++|.|++++++|   +++|++|++|.       +   
T Consensus        50 ~~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~---  110 (181)
T PRK13728         50 TEKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------Q---  110 (181)
T ss_pred             cCCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------C---
Confidence            345567788874  99999999997    77799999999999999999999998   49999999884       1   


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCc--cccceeEEEECCCCcEEE-EcCCCCChhhHHHHH
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS--IKWNFSKFLVDKEGNVVE-RYAPTTSPLSIEVVL  220 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~P~~~lid~~G~I~~-~~~g~~~~~~l~~~l  220 (225)
                              ....||++  .|.........|             +  +.++|++||||++|+++. .+.|..+.+++++.|
T Consensus       111 --------~~~~fPv~--~dd~~~~~~~~~-------------g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I  167 (181)
T PRK13728        111 --------GDTAFPEA--LPAPPDVMQTFF-------------PNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARM  167 (181)
T ss_pred             --------CCCCCceE--ecCchhHHHHHh-------------CCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHH
Confidence                    12588887  332222233333             4  268999999999999974 799999999999999


Q ss_pred             HhhhC
Q 027311          221 ECLCC  225 (225)
Q Consensus       221 ~~ll~  225 (225)
                      +.+++
T Consensus       168 ~~ll~  172 (181)
T PRK13728        168 DTVLQ  172 (181)
T ss_pred             HHHHh
Confidence            98874

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.89  E-value=2e-22  Score=145.66  Aligned_cols=121  Identities=20%  Similarity=0.323  Sum_probs=103.1

Q ss_pred             cCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311           70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC  149 (225)
Q Consensus        70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~  149 (225)
                      |+|++++.+|+.+++++++||+++|+||++||++|+.++|.+++++++     +.+++|++|.      ++.+++.+++ 
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~-   68 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFM-   68 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHH-
Confidence            789999999999999999999999999999999999999999999876     6688888773      2678899998 


Q ss_pred             hhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          150 TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      ++++++|+++.  |.++. ..+.|             ++.++|+++|+|++| |++++.|..+++.+.+.
T Consensus        69 ~~~~~~~~~~~--d~~~~-~~~~~-------------~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~  121 (123)
T cd03011          69 QKKGYGFPVIN--DPDGV-ISARW-------------GVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             HHcCCCccEEE--CCCcH-HHHhC-------------CCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence            78889999873  43332 33333             888999999999999 99999999999888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.89  E-value=4.8e-23  Score=150.87  Aligned_cols=111  Identities=19%  Similarity=0.261  Sum_probs=86.4

Q ss_pred             CCC-CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           77 AKG-QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        77 ~~G-~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      ++| +++++++++||++||+||++||++|+.++|.+++++++++++  ++++++|++|.       +.+++.+|+ ++++
T Consensus         4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~-~~~~   75 (132)
T cd02964           4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYF-SEMP   75 (132)
T ss_pred             ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHH-hcCC
Confidence            344 499999999999999999999999999999999999999875  79999999985       678888898 6666


Q ss_pred             CCcceeeeecCC-CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          154 AEFPIFDKVDVN-GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       154 ~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                       .|..+...+.. .....+.|             ++.++|+++|||++|+|+++...
T Consensus        76 -~~~~~~~~d~~~~~~~~~~~-------------~v~~iPt~~lid~~G~iv~~~~~  118 (132)
T cd02964          76 -PWLAVPFEDEELRELLEKQF-------------KVEGIPTLVVLKPDGDVVTTNAR  118 (132)
T ss_pred             -CeEeeccCcHHHHHHHHHHc-------------CCCCCCEEEEECCCCCEEchhHH
Confidence             54443211100 11122223             88899999999999999977544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.87  E-value=1.7e-21  Score=137.94  Aligned_cols=116  Identities=29%  Similarity=0.537  Sum_probs=99.4

Q ss_pred             CeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 027311           71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACT  150 (225)
Q Consensus        71 ~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~  150 (225)
                      +|++.+.+|+.+++++++||+++|.||++||+.|...++.+.++++++++.++.+++|++|.    .  +.+++++++ +
T Consensus         1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~----~--~~~~~~~~~-~   73 (116)
T cd02966           1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD----D--DPAAVKAFL-K   73 (116)
T ss_pred             CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC----C--CHHHHHHHH-H
Confidence            57889999999999999999999999999999999999999999999987789999999984    0  389999999 7


Q ss_pred             hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          151 RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       151 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                      +++.+++++.  |.. ....+.|             ++.++|+++|+|++|++++++.|
T Consensus        74 ~~~~~~~~~~--~~~-~~~~~~~-------------~~~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          74 KYGITFPVLL--DPD-GELAKAY-------------GVRGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             HcCCCcceEE--cCc-chHHHhc-------------CcCccceEEEECCCCcEEEEecC
Confidence            7788888873  432 3334444             77789999999999999998765

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.87  E-value=1.1e-21  Score=153.21  Aligned_cols=131  Identities=15%  Similarity=0.225  Sum_probs=99.6

Q ss_pred             cCCCceecCeEEeC----CCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           63 SQSKTSVHDFSVKD----AKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        63 ~~~g~~~p~f~l~~----~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      ..+|+++|+|++.+    .+|+.++|++++||++||+|| ++||++|..+++.|++++++|+++|++|++||+|      
T Consensus         6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------   79 (199)
T PTZ00253          6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------   79 (199)
T ss_pred             cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC------
Confidence            46899999999765    466899999999999999999 5799999999999999999999999999999998      


Q ss_pred             CCCHHHHHHHHHh-h-----cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          138 PGDNEQIQEFACT-R-----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       138 ~~~~~~~~~~~~~-~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                        +.....+|... +     .+++||++.  |.+ ....+.|+.+....      ++ .+|++||||++|+|++...+..
T Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~fpll~--D~~-~~ia~~ygv~~~~~------g~-~~r~~fiID~~G~i~~~~~~~~  147 (199)
T PTZ00253         80 --SEYAHLQWTLQERKKGGLGTMAIPMLA--DKT-KSIARSYGVLEEEQ------GV-AYRGLFIIDPKGMLRQITVNDM  147 (199)
T ss_pred             --CHHHHHHHHhChHhhCCccccccceEE--CcH-hHHHHHcCCcccCC------Cc-eEEEEEEECCCCEEEEEEecCC
Confidence              44444444311 1     147899984  443 33445564432211      11 3689999999999999876644

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.87  E-value=2.3e-22  Score=147.00  Aligned_cols=112  Identities=21%  Similarity=0.307  Sum_probs=86.0

Q ss_pred             EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311           74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTR  151 (225)
Q Consensus        74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~  151 (225)
                      +.+.+|+.+++++++||++||+||++||++|+.++|.+++++++++++  +++|++|++|.       +.+++++++ ++
T Consensus         3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~-~~   74 (131)
T cd03009           3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYF-SK   74 (131)
T ss_pred             ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHH-Hc
Confidence            568899999999999999999999999999999999999999999865  69999999985       667788877 43


Q ss_pred             cCCCcceeeeecCC-CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311          152 FKAEFPIFDKVDVN-GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       152 ~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~  208 (225)
                      .+  +..+...+.+ .....+.|             ++.++|+++|||++|+|+.+..
T Consensus        75 ~~--~~~~~~~~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~  117 (131)
T cd03009          75 MP--WLAVPFSDRERRSRLNRTF-------------KIEGIPTLIILDADGEVVTTDA  117 (131)
T ss_pred             CC--eeEcccCCHHHHHHHHHHc-------------CCCCCCEEEEECCCCCEEcccH
Confidence            32  2211101100 01122222             8888999999999999997744

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.84  E-value=1.3e-20  Score=143.98  Aligned_cols=140  Identities=19%  Similarity=0.298  Sum_probs=107.3

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~  141 (225)
                      .....|+|+++|++|+.+++++++||++||+|..|.|| .|...+..|.+++++++++  .++++.||+|    ++.|++
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp  103 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP  103 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence            55678899999999999999999999999999999999 9999999999999998864  6999999999    788999


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhcccc---CCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                      +.+++|+ ++++.++..+...........+.|+.....   .....++.+.|...+|||||+|+|+..+.+
T Consensus       104 ~~L~~Y~-~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~  173 (174)
T PF02630_consen  104 EVLKKYA-KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL  173 (174)
T ss_dssp             HHHHHHH-HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred             HHHHHHH-HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence            9999999 788888887754332222233333322211   112223478888999999999999988754

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.84  E-value=6.3e-21  Score=131.61  Aligned_cols=94  Identities=26%  Similarity=0.375  Sum_probs=72.6

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHh-cCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ||+++|+||++||++|+.++|.|.+++++|+ +.++++|+|+.|.       +.+++++++ ++.+.++..+.  ... .
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~-~~~~~~~~~~~--~~~-~   69 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFL-KKNNFPWYNVP--FDD-D   69 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHH-HTCTTSSEEEE--TTT-H
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHH-HhcCCCceEEe--eCc-c
Confidence            8999999999999999999999999999999 5569999999985       788999998 66666666552  111 1


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcE
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV  203 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I  203 (225)
                      ....+.+.+          ++.++|+++|+|++|+|
T Consensus        70 ~~~~l~~~~----------~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   70 NNSELLKKY----------GINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             HHHHHHHHT----------T-TSSSEEEEEETTSBE
T ss_pred             hHHHHHHHC----------CCCcCCEEEEECCCCCC
Confidence            122222222          89999999999999987

...

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.83  E-value=5.8e-20  Score=137.92  Aligned_cols=133  Identities=17%  Similarity=0.246  Sum_probs=102.9

Q ss_pred             CCceecCeEEeCCC---CCeecCCc-cCCCEEEEEEc-ccCCCCChHh-HHHHHHHHHHHhcCCe-EEEEEecCCCCCCC
Q 027311           65 SKTSVHDFSVKDAK---GQDVDLSI-YKGKLLLIVNV-ASQCGLTNSN-YTELSQLYDKYKNQGL-EILAFPCNQFGAQE  137 (225)
Q Consensus        65 ~g~~~p~f~l~~~~---G~~~~l~~-~~gk~vlv~F~-~twC~~C~~~-~~~l~~l~~~~~~~~~-~iv~Is~d~~~~~~  137 (225)
                      +|+.+|+|++.+.+   |+.++|++ ++||++||.|+ +.|||.|..| ++.+++.++++++.|+ .|++||.|      
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------   74 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------   74 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence            58999999999986   99999999 68887666655 8899999999 9999999999999999 69999998      


Q ss_pred             CCCHHHHHHHHHhhcCC--CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC
Q 027311          138 PGDNEQIQEFACTRFKA--EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS  212 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~  212 (225)
                        +....++|+ ++++.  +||+++  |.+ ....+.|+.+.....  .+.+......+|||| +|+|++.+.....
T Consensus        75 --~~~~~~~~~-~~~~~~~~f~lLs--D~~-~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~~  142 (155)
T cd03013          75 --DPFVMKAWG-KALGAKDKIRFLA--DGN-GEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEEDP  142 (155)
T ss_pred             --CHHHHHHHH-HhhCCCCcEEEEE--CCC-HHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecCC
Confidence              788888898 77776  899985  443 345556665433210  111112356889999 6999998765443

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.82  E-value=2.5e-19  Score=140.17  Aligned_cols=150  Identities=20%  Similarity=0.297  Sum_probs=119.1

Q ss_pred             CeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHh---cCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311           71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYK---NQGLEILAFPCNQFGAQEPGDNEQIQE  146 (225)
Q Consensus        71 ~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~---~~~~~iv~Is~d~~~~~~~~~~~~~~~  146 (225)
                      +|+++|++|+.+++.+++||+++|+|..|.|| .|..++..|.+++++..   ...++++.||+|    +++|+++.+++
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~  124 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK  124 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence            89999999999999999999999999999999 99999999999999988   335999999999    79999999999


Q ss_pred             HHHh-hcCCCcceeeeecCCCCCchhhhhhccc--cCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          147 FACT-RFKAEFPIFDKVDVNGDNAAPLYKHLKS--SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       147 ~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      |+ + .+...|..+.......+...+.|+....  ...+..++.+.|...+|+||++|+++..+.+..+++++.+.|+++
T Consensus       125 Y~-~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l  203 (207)
T COG1999         125 YA-ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL  203 (207)
T ss_pred             Hh-cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence            98 4 3444455553222222333344444431  111113468899999999999999999988888899999999998


Q ss_pred             hC
Q 027311          224 CC  225 (225)
Q Consensus       224 l~  225 (225)
                      ++
T Consensus       204 ~~  205 (207)
T COG1999         204 LK  205 (207)
T ss_pred             hh
Confidence            74

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=5.5e-19  Score=133.22  Aligned_cols=143  Identities=19%  Similarity=0.330  Sum_probs=112.4

Q ss_pred             cCCCceecCeEEeCC-CCC---eecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDA-KGQ---DVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~-~G~---~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      ..+|+++|+|+.... .|.   +++++++.|||+|+.|| +...+.|..|+..+++.+++|+++|++|++||+|      
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------   76 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------   76 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence            368999999999998 774   99999999999999999 8899999999999999999999999999999999      


Q ss_pred             CCCHHHHHHHHHh---hcC---CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          138 PGDNEQIQEFACT---RFK---AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       138 ~~~~~~~~~~~~~---~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                        +.....+|...   ..+   ++||++.  |.++. ..+.|+.+..+.      ++ ..-.+|||||+|+|++......
T Consensus        77 --s~fsH~aW~~~~~~~~gi~~i~~Pmia--D~~~~-vs~~ygvl~~~~------g~-a~R~~FIIDp~g~ir~~~v~~~  144 (194)
T COG0450          77 --SVFSHKAWKATIREAGGIGKIKFPMIA--DPKGE-IARAYGVLHPEE------GL-ALRGTFIIDPDGVIRHILVNPL  144 (194)
T ss_pred             --cHHHHHHHHhcHHhcCCccceecceEE--cCchh-HHHHcCCcccCC------Cc-ceeEEEEECCCCeEEEEEEecC
Confidence              67777777533   455   6899984  54444 456677665432      22 3457899999999998855433


Q ss_pred             ----ChhhHHHHHHhh
Q 027311          212 ----SPLSIEVVLECL  223 (225)
Q Consensus       212 ----~~~~l~~~l~~l  223 (225)
                          +.+++...|++|
T Consensus       145 ~iGRn~dEilR~idAl  160 (194)
T COG0450         145 TIGRNVDEILRVIDAL  160 (194)
T ss_pred             CCCcCHHHHHHHHHHH
Confidence                345666666654

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.81  E-value=1.7e-19  Score=134.51  Aligned_cols=109  Identities=15%  Similarity=0.238  Sum_probs=78.3

Q ss_pred             CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 027311           79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI  158 (225)
Q Consensus        79 G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (225)
                      |+.++++++    .||+||++||++|++++|.|+++++++   ++.|++|++|+       ..  .     +    .||.
T Consensus        44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~-----~----~fp~   98 (153)
T TIGR02738        44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L-----T----GFPD   98 (153)
T ss_pred             chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c-----c----cccc
Confidence            666666554    499999999999999999999999988   38899999874       11  0     1    3443


Q ss_pred             eeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHHHHhhh
Q 027311          159 FDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       159 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      .  .+.+.......|..          +++.++|++||||++|++ +.++.|..+.+++++.|+++|
T Consensus        99 ~--~~~~~~~~~~~~~~----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738        99 P--LPATPEVMQTFFPN----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             c--cCCchHHHHHHhcc----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence            3  22222111122210          156789999999999886 457889999999999998875

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=99.76  E-value=7.5e-18  Score=117.51  Aligned_cols=106  Identities=64%  Similarity=1.129  Sum_probs=98.2

Q ss_pred             cCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311           70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC  149 (225)
Q Consensus        70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~  149 (225)
                      .+|++.|.+|+.++|++++||++||.-.||.|+.-. ....|++++++|+++|++|+++..++++.+|+++.+++++++.
T Consensus         2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~   80 (108)
T PF00255_consen    2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK   80 (108)
T ss_dssp             GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred             cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence            589999999999999999999999999999999888 9999999999999999999999999999999999999999997


Q ss_pred             hhcCCCcceeeeecCCCCCchhhhhhc
Q 027311          150 TRFKAEFPIFDKVDVNGDNAAPLYKHL  176 (225)
Q Consensus       150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~  176 (225)
                      .+++.+||++...+..|...+.+|+++
T Consensus        81 ~~~~~~F~vf~ki~VnG~~ahPly~~L  107 (108)
T PF00255_consen   81 EKFGVTFPVFEKIDVNGPDAHPLYKYL  107 (108)
T ss_dssp             HCHT-SSEEBS-BBSSSTTB-HHHHHH
T ss_pred             hccCCcccceEEEEecCCCCcHHHHHh
Confidence            778999999999999999999999876

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.75  E-value=4.5e-18  Score=125.82  Aligned_cols=107  Identities=15%  Similarity=0.198  Sum_probs=84.8

Q ss_pred             EeCCCCCeecCCc--cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311           74 VKDAKGQDVDLSI--YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR  151 (225)
Q Consensus        74 l~~~~G~~~~l~~--~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~  151 (225)
                      +.+++++...+++  .+||++||+||++||++|+.++|.+.+++++++++ +.++.|++|.       +  ...+.+   
T Consensus         3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~---   69 (142)
T cd02950           3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEI---   69 (142)
T ss_pred             hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHH---
Confidence            3455555555554  37999999999999999999999999999999765 8899998873       1  111111   


Q ss_pred             cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                         ..|             +|.++|+++++|++|+++.+..|..+.+++++.|+++++
T Consensus        70 -------------------~~~-------------~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          70 -------------------DRY-------------RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             -------------------HHc-------------CCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence                               112             788899999999999999999999988999999998863

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.69  E-value=1.6e-16  Score=116.37  Aligned_cols=115  Identities=17%  Similarity=0.255  Sum_probs=95.3

Q ss_pred             eEEeCCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           72 FSVKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        72 f~l~~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      ..+...+|..+..+ .++||+|.++|-|.|||+|+...|.|.++|++.++.  .++||.||.|.       +.+++.+|.
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------~~~~~~~y~   87 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------DEESLDEYM   87 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------CHHHHHHHH
Confidence            56788889888888 479999999999999999999999999999999865  49999999997       888999998


Q ss_pred             HhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311          149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY  207 (225)
Q Consensus       149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~  207 (225)
                       .+++.+|..+...|...+.....|             .+.++|+..+++++|+++...
T Consensus        88 -~~~~~~W~~iPf~d~~~~~l~~ky-------------~v~~iP~l~i~~~dG~~v~~d  132 (157)
T KOG2501|consen   88 -LEHHGDWLAIPFGDDLIQKLSEKY-------------EVKGIPALVILKPDGTVVTED  132 (157)
T ss_pred             -HhcCCCeEEecCCCHHHHHHHHhc-------------ccCcCceeEEecCCCCEehHh
Confidence             777888887743333333344444             899999999999999988664

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=99.68  E-value=2.6e-16  Score=122.76  Aligned_cols=148  Identities=18%  Similarity=0.238  Sum_probs=110.9

Q ss_pred             cCeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcC-C--eEEEEEecCCCCCCCCCCHHHHH
Q 027311           70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ-G--LEILAFPCNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~-~--~~iv~Is~d~~~~~~~~~~~~~~  145 (225)
                      -+|+|.|.+|+.++-.+++|||+|++|-.|+|| .|..|+..|.++.++..++ +  +..|.|++|    +++|+.+.++
T Consensus       120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~  195 (280)
T KOG2792|consen  120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA  195 (280)
T ss_pred             CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence            579999999999999999999999999999999 9999999999999988755 2  447899999    7999999999


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhcccc-CCC-CCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS-KGG-LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                      +|+ ++++...--+...-..-..+.+.|+..-+. +.+ ...|=|.+.=..|||||+|..+..+.-.-+++++.+.|.+
T Consensus       196 eY~-~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~  273 (280)
T KOG2792|consen  196 EYV-SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILK  273 (280)
T ss_pred             HHH-HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHH
Confidence            999 776654433322111112233344432222 222 2235677777889999999999777666677777776654

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.67  E-value=4.8e-16  Score=108.83  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +.+||++||+||++||++|+.++|.++++.+++  .++.++.|+.|.       + ....+++ ++              
T Consensus        12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~-------~-~~~~~l~-~~--------------   66 (103)
T cd02985          12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE-------N-DSTMELC-RR--------------   66 (103)
T ss_pred             HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC-------C-hHHHHHH-HH--------------
Confidence            346999999999999999999999999999999  348999999873       2 2222332 21              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                             |             +|.++|+++++ ++|+++.++.|.. ++++.+.+.+
T Consensus        67 -------~-------------~V~~~Pt~~~~-~~G~~v~~~~G~~-~~~l~~~~~~  101 (103)
T cd02985          67 -------E-------------KIIEVPHFLFY-KDGEKIHEEEGIG-PDELIGDVLY  101 (103)
T ss_pred             -------c-------------CCCcCCEEEEE-eCCeEEEEEeCCC-HHHHHHHHHh
Confidence                   2             77889996666 9999999999944 6677776643

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.4e-15  Score=110.50  Aligned_cols=90  Identities=16%  Similarity=0.217  Sum_probs=76.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++||+|+|||+||++|+...|.|+++..+|.++ +.+..|++|+       ..+-.     .                 
T Consensus        60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~ela-----~-----------------  109 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HPELA-----E-----------------  109 (150)
T ss_pred             cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------ccchH-----h-----------------
Confidence            4679999999999999999999999999999776 9999999884       11111     1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          -|             +|.++|+++++ ++|..+.+..|..+.+.+.+.|+++++
T Consensus       110 ----~Y-------------~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  110 ----DY-------------EISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             ----hc-------------ceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence                13             78889998888 889999999999999999999999874

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=3.5e-15  Score=109.04  Aligned_cols=144  Identities=20%  Similarity=0.341  Sum_probs=106.1

Q ss_pred             ccccCCCceecCeEEeCCCCCeecCCccCCC-EEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           60 TMASQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        60 ~~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      ...+..|+.+|||+|.|.+|+.++|.++.|+ +||++|| +...|.|.++...+++-|++++..+.+|+++|.|      
T Consensus        60 s~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D------  133 (211)
T KOG0855|consen   60 SLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD------  133 (211)
T ss_pred             ceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC------
Confidence            3467899999999999999999999999776 7888777 6788999999999999999999989999999998      


Q ss_pred             CCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChh-hH
Q 027311          138 PGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL-SI  216 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~-~l  216 (225)
                        +....++|. .+++++|.+++  |+.++ ....++..+..-++..      .-..||.|+.|...-.+....+|+ .+
T Consensus       134 --~s~sqKaF~-sKqnlPYhLLS--Dpk~e-~ik~lGa~k~p~gg~~------~Rsh~if~kg~~k~~ik~~~isPevsv  201 (211)
T KOG0855|consen  134 --DSASQKAFA-SKQNLPYHLLS--DPKNE-VIKDLGAPKDPFGGLP------GRSHYIFDKGGVKQLIKNNQISPEVSV  201 (211)
T ss_pred             --chHHHHHhh-hhccCCeeeec--Ccchh-HHHHhCCCCCCCCCcc------cceEEEEecCCeEEEEEecccCccccH
Confidence              667778887 88899999984  44443 3333322221112222      226688888876665555555554 34


Q ss_pred             HHHHH
Q 027311          217 EVVLE  221 (225)
Q Consensus       217 ~~~l~  221 (225)
                      .+.++
T Consensus       202 d~a~k  206 (211)
T KOG0855|consen  202 DEALK  206 (211)
T ss_pred             HHHHH
Confidence            44443

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.62  E-value=3.5e-15  Score=105.85  Aligned_cols=91  Identities=11%  Similarity=0.020  Sum_probs=74.7

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      ..+|++++|.||++||++|+...|.+.++.+++++.++.+..|++|.        ...+   + ++              
T Consensus        21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~~l---~-~~--------------   74 (111)
T cd02963          21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ERRL---A-RK--------------   74 (111)
T ss_pred             ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cHHH---H-HH--------------
Confidence            34689999999999999999999999999999987678899888762        1111   1 11              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                             |             +|.++|+++++ ++|+++.+..|..+.+++.+.|++|
T Consensus        75 -------~-------------~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          75 -------L-------------GAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             -------c-------------CCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence                   2             78889999999 5999999999988888999888765

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.60  E-value=8.1e-15  Score=106.14  Aligned_cols=104  Identities=15%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             CC-CEEEEEEcccCCCCChHhHHHHH---HHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           88 KG-KLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        88 ~g-k~vlv~F~~twC~~C~~~~~~l~---~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      +| |+++|.||++||++|+...+.+.   ++.+.+++ ++.++.|++|.       +. ....|         +..   .
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~~---------~~~---~   70 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTDF---------DGE---A   70 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeecc---------CCC---C
Confidence            57 99999999999999999999885   56666664 58899998873       11 11111         100   0


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      .........|             ++.++|+++++|++ |+++.+..|..+.+++.+.|+.+++
T Consensus        71 ~~~~~l~~~~-------------~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          71 LSEKELARKY-------------RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             ccHHHHHHHc-------------CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            0111122222             88899999999999 8999999999999999999988763

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.60  E-value=9.5e-15  Score=102.03  Aligned_cols=87  Identities=13%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .|++++|+||++||++|+..+|.++++++++++..+.++.++.|        ..+.    + ++                
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~~~----~-~~----------------   66 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TIDT----L-KR----------------   66 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CHHH----H-HH----------------
Confidence            58899999999999999999999999999998666788888765        1111    1 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                           |             ++.++|+++++ ++|+++.+..|. +++.+.+.|++|
T Consensus        67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~  102 (102)
T cd02948          67 -----Y-------------RGKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL  102 (102)
T ss_pred             -----c-------------CCCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence                 2             77888986655 799999999885 678888888764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>TIGR02740 TraF-like TraF-like protein

Probab=99.59  E-value=3e-15  Score=121.83  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=82.4

Q ss_pred             CCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311           78 KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP  157 (225)
Q Consensus        78 ~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (225)
                      .++...+++++|+++||+||++||++|+.++|.|++++++|+   +.|++|++|.       ...           ..||
T Consensus       155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~-------~~~-----------~~fp  213 (271)
T TIGR02740       155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDG-------GPL-----------PGFP  213 (271)
T ss_pred             HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCC-------Ccc-----------ccCC
Confidence            344577888999999999999999999999999999999984   8999999984       110           1244


Q ss_pred             eeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhh
Q 027311          158 IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       158 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ..   +.+.. ....|             +|.++|++||+|++ |++.....|..+.++|.+.|..+.
T Consensus       214 ~~---~~d~~-la~~~-------------gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a  264 (271)
T TIGR02740       214 NA---RPDAG-QAQQL-------------KIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAA  264 (271)
T ss_pred             cc---cCCHH-HHHHc-------------CCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            43   22211 22222             89999999999995 566566778889999988887653

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.59  E-value=5.8e-15  Score=102.71  Aligned_cols=86  Identities=15%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      ++++||+++|.||++||++|+.++|.++++.+++++  +.++.|..+.       ....                     
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~-------~~~~---------------------   63 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESS-------IKPS---------------------   63 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCC-------CCHH---------------------
Confidence            357899999999999999999999999999999964  7777775431       0010                     


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                          ....|             ++.++||++++++ | .+.++.|..+.+++.+.
T Consensus        64 ----l~~~~-------------~V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~f   99 (100)
T cd02999          64 ----LLSRY-------------GVVGFPTILLFNS-T-PRVRYNGTRTLDSLAAF   99 (100)
T ss_pred             ----HHHhc-------------CCeecCEEEEEcC-C-ceeEecCCCCHHHHHhh
Confidence                11112             7888999999975 5 67889998877776654

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.58  E-value=1.6e-14  Score=99.55  Aligned_cols=86  Identities=15%  Similarity=0.270  Sum_probs=69.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +|++++|+||++||++|+...|.++++.+.+++. +.++.|+.|.        ..++   + ++                
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~~~l---~-~~----------------   61 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA--------QPQI---A-QQ----------------   61 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC--------CHHH---H-HH----------------
Confidence            5889999999999999999999999999999764 8888888763        1111   1 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                           |             ++.++|++++++ +|+++.++.|..+.+++...|+
T Consensus        62 -----~-------------~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          62 -----F-------------GVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             -----c-------------CCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHhC
Confidence                 2             777889999996 8999999999888888877653

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.55  E-value=2.8e-14  Score=99.97  Aligned_cols=91  Identities=13%  Similarity=0.125  Sum_probs=71.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      +||+++|.||++||++|+...+.+   .++.+.+++ ++.++.|+++.       +.....+++ ++             
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~-------------   67 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KR-------------   67 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HH-------------
Confidence            589999999999999999998887   578888876 69999998763       222222222 11             


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECC-CCcEEEEcCCCCChhhHHHHHH
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                              |             ++.++|+++++++ +|+++.++.|..+.+++.+.|+
T Consensus        68 --------~-------------~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          68 --------F-------------GVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             --------c-------------CCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence                    2             7788999999999 9999999999999888887763

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.55  E-value=2.3e-14  Score=100.92  Aligned_cols=79  Identities=9%  Similarity=-0.034  Sum_probs=64.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++++||+|||+||++|+...|.+.++.+++++. +.++.|++|.       . .++.    ++                
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------~-~~la----~~----------------   63 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------V-PDFN----KM----------------   63 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------C-HHHH----HH----------------
Confidence            4679999999999999999999999999999765 7899999883       2 2221    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL  214 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~  214 (225)
                           |             +|.++||++++ ++|+++.+..|..+..
T Consensus        64 -----~-------------~V~~iPTf~~f-k~G~~v~~~~G~~~~~   91 (114)
T cd02954          64 -----Y-------------ELYDPPTVMFF-FRNKHMKIDLGTGNNN   91 (114)
T ss_pred             -----c-------------CCCCCCEEEEE-ECCEEEEEEcCCCCCc
Confidence                 2             78889998888 7999999998876554

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.52  E-value=9.5e-14  Score=98.02  Aligned_cols=90  Identities=20%  Similarity=0.237  Sum_probs=73.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++++|.||++||++|+...|.++++.+++++. +.+..|+.|.       . ..+   . +                 
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~-~~~---~-~-----------------   69 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------N-PGT---A-P-----------------   69 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------C-hhH---H-H-----------------
Confidence            3779999999999999999999999999999865 8899998763       1 111   0 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.+..|..+.++++..|+..|.
T Consensus        70 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~  109 (109)
T PRK09381         70 ----KY-------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  109 (109)
T ss_pred             ----hC-------------CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence                12             67778998888 799999999999889999999987663

>PHA02278 thioredoxin-like protein

Probab=99.51  E-value=1e-13  Score=96.63  Aligned_cols=87  Identities=16%  Similarity=0.256  Sum_probs=65.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +++++||+|||+||++|+...|.+.++.+++..+ +.++.|++|..    +.+..++.    +                 
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~~----~~d~~~l~----~-----------------   66 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDAE----DVDREKAV----K-----------------   66 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCcc----ccccHHHH----H-----------------
Confidence            5789999999999999999999999998886443 67888888730    00011111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~  218 (225)
                          .|             +|.++||.+++ ++|+++.+..|..+.+++.+
T Consensus        67 ----~~-------------~I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~   99 (103)
T PHA02278         67 ----LF-------------DIMSTPVLIGY-KDGQLVKKYEDQVTPMQLQE   99 (103)
T ss_pred             ----HC-------------CCccccEEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence                12             78889998777 78999999999877766554

>PRK10996 thioredoxin 2; Provisional

Probab=99.50  E-value=8.6e-14  Score=102.58  Aligned_cols=89  Identities=12%  Similarity=0.173  Sum_probs=72.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|+||++||++|+...+.+.++++++.+. +.++.|+.|.        ..++   + ++                
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~--------~~~l---~-~~----------------  101 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTEA--------EREL---S-AR----------------  101 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCCC--------CHHH---H-Hh----------------
Confidence            5899999999999999999999999999998764 8888887652        1111   1 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           |             +|.++|+++++ ++|+++.++.|..+.+++++.|++++
T Consensus       102 -----~-------------~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        102 -----F-------------RIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             -----c-------------CCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence                 2             77788998777 58999999999999999999998874

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.49  E-value=1.2e-13  Score=96.13  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=70.8

Q ss_pred             CCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 027311           77 AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF  156 (225)
Q Consensus        77 ~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (225)
                      ++++.++..-.++++++|.||++||++|+...|.++++.+++++. +.+..|+.|.       . ..   .+ ++     
T Consensus         6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~-~~---~~-~~-----   67 (101)
T cd03003           6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------D-RM---LC-RS-----   67 (101)
T ss_pred             cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------c-HH---HH-HH-----
Confidence            334444333345789999999999999999999999999999865 8899998873       1 11   11 11     


Q ss_pred             ceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311          157 PIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       157 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~  218 (225)
                                      |             ++.++|+.+++ ++|+.+.++.|..+.+.+.+
T Consensus        68 ----------------~-------------~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~   99 (101)
T cd03003          68 ----------------Q-------------GVNSYPSLYVF-PSGMNPEKYYGDRSKESLVK   99 (101)
T ss_pred             ----------------c-------------CCCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence                            1             67778998888 78998888999887776654

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.48  E-value=3.4e-13  Score=93.83  Aligned_cols=86  Identities=15%  Similarity=0.222  Sum_probs=66.2

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+|+ ++|.||++||++|+...|.++++.++++..++.+..|+.|.       .. .+   + +                
T Consensus        15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~-~~---~-~----------------   65 (101)
T cd02994          15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EP-GL---S-G----------------   65 (101)
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CH-hH---H-H----------------
Confidence            3666 57999999999999999999999998876568888887663       11 11   1 1                


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                           .|             ++.++|+++++ ++|++ .++.|..+.+++.+.|+
T Consensus        66 -----~~-------------~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          66 -----RF-------------FVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE  100 (101)
T ss_pred             -----Hc-------------CCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence                 12             77888998887 88986 68888888888877765

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.9e-13  Score=109.57  Aligned_cols=89  Identities=15%  Similarity=0.298  Sum_probs=76.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +-+||||+||++||++|+..+|.|.++..+|+.+ +.+..|++|.       . ..+.                      
T Consensus        42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------~-p~vA----------------------   90 (304)
T COG3118          42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------E-PMVA----------------------   90 (304)
T ss_pred             cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------c-hhHH----------------------
Confidence            4569999999999999999999999999999987 9999999983       1 1111                      


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                         ..|             +|.++|++|++ ++|+-+.-+.|..+.+++++.|++++
T Consensus        91 ---aqf-------------giqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~  130 (304)
T COG3118          91 ---AQF-------------GVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVL  130 (304)
T ss_pred             ---HHh-------------CcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhc
Confidence               112             89999999999 99999999999998889999999875

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.45  E-value=9.4e-14  Score=98.45  Aligned_cols=106  Identities=16%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHH---HHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLY---DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~---~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      +||++++.||.+|||+|+...+.+.+..   ..+++ ++.++.++++.       +......+. +..+...+..     
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~-----   69 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVL-DFDGQKNVRL-----   69 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHH-SHTCHSSCHH-----
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------ccccccccc-ccccchhhhH-----
Confidence            5899999999999999998888887544   34433 48899898873       333333333 2222211111     


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                      ......+.|             ++.++|+++++|++|+++.+..|..+++++.+.|
T Consensus        70 ~~~~l~~~~-------------~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   70 SNKELAQRY-------------GVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             HHHHHHHHT-------------T--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             HHHHHHHHc-------------CCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            001122222             8999999999999999999999999998887754

...

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.43  E-value=9.9e-13  Score=91.98  Aligned_cols=85  Identities=16%  Similarity=0.161  Sum_probs=66.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++++|.||++||++|+...|.++++.+++++. +.+..|+.|.        ..++   + ++                
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~--------~~~~---~-~~----------------   68 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQK--------YESL---C-QQ----------------   68 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCc--------hHHH---H-HH----------------
Confidence            4679999999999999999999999999999654 8888888762        2221   1 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC-hhhHHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS-PLSIEVV  219 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~-~~~l~~~  219 (225)
                           |             +|.++|+.+++++.|+.+.++.|..+ .+++.+.
T Consensus        69 -----~-------------~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~  103 (104)
T cd03004          69 -----A-------------NIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF  103 (104)
T ss_pred             -----c-------------CCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence                 1             77788999999777688899999775 6666543

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.43  E-value=4.4e-13  Score=93.22  Aligned_cols=82  Identities=21%  Similarity=0.342  Sum_probs=63.7

Q ss_pred             EEEEEEcccCCCCChHhHHHHHHHHHHHhc--CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~--~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++|.||++||++|+...|.++++++++++  .++.++.|..+.        ...+   + +                  
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--------~~~~---~-~------------------   67 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--------HREL---C-S------------------   67 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--------Chhh---H-h------------------
Confidence            599999999999999999999999999976  358888887652        1111   1 1                  


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                         .|             ++.++|+++++ ++|+.+.++.|..+.+++.+.
T Consensus        68 ---~~-------------~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~  101 (102)
T cd03005          68 ---EF-------------QVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF  101 (102)
T ss_pred             ---hc-------------CCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence               12             67778999999 789988899998887766654

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.43  E-value=1.1e-12  Score=91.94  Aligned_cols=88  Identities=13%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      ++++++|.||++||++|+...|.++++++++++.+  +.+..++.+.        ...   .                  
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~~~---~------------------   64 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------YSS---I------------------   64 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------CHh---H------------------
Confidence            46799999999999999999999999999997543  6666666541        011   1                  


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                          .+.|             ++.++|+.++++ +| ...++.|..+.+++.+.+++.
T Consensus        65 ----~~~~-------------~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          65 ----ASEF-------------GVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             ----Hhhc-------------CCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence                1112             788899999994 45 446788888888888887764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.42  E-value=1.5e-12  Score=90.00  Aligned_cols=85  Identities=14%  Similarity=0.280  Sum_probs=67.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|++++.||++||+.|+...+.++++.+++++ ++.++.|+.|.       . .++   . ++                
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~-------~-~~l---~-~~----------------   62 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE-------D-QEI---A-EA----------------   62 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC-------C-HHH---H-HH----------------
Confidence            578999999999999999999999999999875 48888888763       1 211   1 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                           +             ++.++|+++++ ++|+++.+..|..+.+++.+.|
T Consensus        63 -----~-------------~v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          63 -----A-------------GIMGTPTVQFF-KDKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             -----C-------------CCeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence                 1             67778999999 5799999999988887777665

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.42  E-value=1.7e-12  Score=94.98  Aligned_cols=90  Identities=10%  Similarity=0.030  Sum_probs=69.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++|||+|||+||++|+...|.|.++.+++++. +.|+-|++|+        ..++.    ++                
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~~dla----~~----------------   72 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------VPDFN----TM----------------   72 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------CHHHH----HH----------------
Confidence            5789999999999999999999999999999776 8889999883        22222    22                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCc-EEEEcCC--------CCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN-VVERYAP--------TTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~-I~~~~~g--------~~~~~~l~~~l~~ll  224 (225)
                           |             +|.+.|+++++=++|+ .+.+..|        ..+.+++.+.++.++
T Consensus        73 -----y-------------~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~  120 (142)
T PLN00410         73 -----Y-------------ELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY  120 (142)
T ss_pred             -----c-------------CccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence                 2             5555667775558888 8888888        456677877777654

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=3.9e-12  Score=93.97  Aligned_cols=127  Identities=17%  Similarity=0.240  Sum_probs=95.7

Q ss_pred             CCCceecCeEEeCC-CC--CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDA-KG--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~l~~~-~G--~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      .+..++|+|+-+.. +|  +.++|++|+||+|++.|+ ..+.-+|..|.-.+.+.++++++.|.+|+++|+|        
T Consensus         5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D--------   76 (196)
T KOG0852|consen    5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD--------   76 (196)
T ss_pred             ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------
Confidence            34556688866553 44  689999999999999999 4566699999999999999999999999999999        


Q ss_pred             CHHHHHHHH---HhhcCC---CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311          140 DNEQIQEFA---CTRFKA---EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       140 ~~~~~~~~~---~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~  208 (225)
                      +.....+|+   .++.|+   ++|+++  |.... ..+-|+.+....|-.       .-..||||++|.++..-.
T Consensus        77 S~fshlAW~ntprk~gGlg~~~iPlls--D~~~~-IsrdyGvL~~~~G~~-------lRglfIId~~gi~R~it~  141 (196)
T KOG0852|consen   77 SVFSHLAWINTPRKQGGLGPLNIPLLS--DLNHE-ISRDYGVLKEDEGIA-------LRGLFIIDPDGILRQITI  141 (196)
T ss_pred             chhhhhhHhcCchhhCCcCccccceee--ccchh-hHHhcCceecCCCcc-------eeeeEEEccccceEEeee
Confidence            777778885   233344   489884  44433 445677776654322       236699999999988543

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.41  E-value=4e-12  Score=91.47  Aligned_cols=98  Identities=14%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .|+.++|+|+++|||+|+...|.|.++.++.   ++.+..|++|.....+..+.+++.++. +++++..           
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~-----------   86 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPT-----------   86 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-HHcCCcc-----------
Confidence            4778999999999999999999999999882   367888888742211222333555655 3322211           


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-CChhhHHHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-TSPLSIEVVL  220 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-~~~~~l~~~l  220 (225)
                                         ++.++|+++++ ++|+.+.+..|. .+.++|++.+
T Consensus        87 -------------------~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        87 -------------------SFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             -------------------cCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence                               56778998888 889999999884 4466666544

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.41  E-value=1.5e-12  Score=92.29  Aligned_cols=85  Identities=13%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++++||.|||+||++|+...|.+.++.+++++. +.+..|+.|.       + ..+.   .++                
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~-------~-~~l~---~~~----------------   79 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW-------P-QGKC---RKQ----------------   79 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC-------C-hHHH---HHh----------------
Confidence            5789999999999999999999999999999765 8889998773       1 1111   011                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                           |             +|.++||..+. ++|+...++.|..+.+.+...
T Consensus        80 -----~-------------~I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~  112 (113)
T cd03006          80 -----K-------------HFFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF  112 (113)
T ss_pred             -----c-------------CCcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence                 2             67778998888 789888888898888777653

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.39  E-value=1.8e-12  Score=90.00  Aligned_cols=89  Identities=13%  Similarity=0.115  Sum_probs=70.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      +|++++|.||++||+.|+...+.++++.+.++.. ++.+..+..|.        ..+   .. +                
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~---~~-~----------------   63 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------EKD---LA-S----------------   63 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------hHH---HH-H----------------
Confidence            6899999999999999999999999999999765 37777776542        111   11 1                


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                           .|             ++.++|+.+++++++. +..+.|..+.++++..|++.
T Consensus        64 -----~~-------------~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        64 -----RF-------------GVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             -----hC-------------CCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence                 12             7778899999998887 67888888888898888764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.39  E-value=2e-12  Score=91.34  Aligned_cols=87  Identities=15%  Similarity=0.222  Sum_probs=66.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.+.++.+++++.++.+..|..|.       +...   ++                   
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~~~---~~-------------------   70 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQRE---FA-------------------   70 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cchh---hH-------------------
Confidence            588999999999999999999999999999997679999998762       1111   11                   


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-CChhhHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-TSPLSIEV  218 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-~~~~~l~~  218 (225)
                        .+.|             ++.++|++++++++|+....|.|. .+.+.+..
T Consensus        71 --~~~~-------------~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~  107 (109)
T cd02993          71 --KEEL-------------QLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLM  107 (109)
T ss_pred             --Hhhc-------------CCCcCCEEEEEcCCCCCceeccCCCCCHHHHHh
Confidence              0112             677789999999888777788874 45665544

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.38  E-value=2.1e-12  Score=90.98  Aligned_cols=88  Identities=16%  Similarity=0.203  Sum_probs=67.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .|++++|.||++||++|+...|.++++.+++++. +.++.|+.|.       +  +..+.+ +                 
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~-------~--~~~~~~-~-----------------   68 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE-------D--KNKPLC-G-----------------   68 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc-------c--ccHHHH-H-----------------
Confidence            4789999999999999999999999999999754 8889898763       0  001111 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCC----cEEEEcCCCCChhhHHHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG----NVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G----~I~~~~~g~~~~~~l~~~l  220 (225)
                          .|             ++.++|+++++++.|    .+...+.|..+.+++.+.|
T Consensus        69 ----~~-------------~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          69 ----KY-------------GVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             ----Hc-------------CCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence                12             778899999998886    3566788877777777665

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=7.4e-12  Score=90.50  Aligned_cols=128  Identities=18%  Similarity=0.196  Sum_probs=97.2

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+++|+++|+|++.+.+.+.++++++.||..++..+ +-..|.|-.+...+++...++.+  +.++.||.|        
T Consensus        16 ~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------   85 (158)
T COG2077          16 NEPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------   85 (158)
T ss_pred             CCCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------
Confidence            3468999999999999999999999999997777655 66999999999999999988865  899999998        


Q ss_pred             CHHHHHHHHHhhcCCCc-ceeeeecCCCCCchhhhhhccccC--CCCCCCccccceeEEEECCCCcEEEEc
Q 027311          140 DNEQIQEFACTRFKAEF-PIFDKVDVNGDNAAPLYKHLKSSK--GGLFGDSIKWNFSKFLVDKEGNVVERY  207 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~P~~~lid~~G~I~~~~  207 (225)
                      .+-...+|+ ..+|+.- ..+  .|.......+.|+....+-  .++..+      +.|++|.+|+|.+..
T Consensus        86 LPFAq~RfC-~aeGi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~gLlAR------aV~V~De~g~V~y~e  147 (158)
T COG2077          86 LPFAQKRFC-GAEGIENVITL--SDFRDRAFGENYGVLINEGPLAGLLAR------AVFVLDENGKVTYSE  147 (158)
T ss_pred             ChhHHhhhh-hhcCcccceEh--hhhhhhhhhHhhCEEeccccccCeeee------EEEEEcCCCcEEEEE
Confidence            788889999 6667764 333  3333333444454433322  133333      669999999999873

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3.9e-12  Score=88.90  Aligned_cols=86  Identities=19%  Similarity=0.295  Sum_probs=69.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|.+||+|+|+||++|+...|.+.++..+|.+  +.++.|++|        .   +...+ ++                
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~-~~----------------   69 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVA-KE----------------   69 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHH-Hh----------------
Confidence            469999999999999999999999999999987  999999987        2   33333 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                           |             ++..+||.+++ ++|+.+.+..|.. ++++++.+.+.
T Consensus        70 -----~-------------~V~~~PTf~f~-k~g~~~~~~vGa~-~~~l~~~i~~~  105 (106)
T KOG0907|consen   70 -----F-------------NVKAMPTFVFY-KGGEEVDEVVGAN-KAELEKKIAKH  105 (106)
T ss_pred             -----c-------------CceEeeEEEEE-ECCEEEEEEecCC-HHHHHHHHHhc
Confidence                 1             78889998888 9999999999865 44777777653

>TIGR01068 thioredoxin thioredoxin

Probab=99.36  E-value=6.2e-12  Score=86.96  Aligned_cols=88  Identities=19%  Similarity=0.300  Sum_probs=71.1

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++++|.||++||+.|+...+.++++.++++++ +.++.|..|.       + ..+   . ++                 
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~-------~-~~~---~-~~-----------------   63 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVDE-------N-PDI---A-AK-----------------   63 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECCC-------C-HHH---H-HH-----------------
Confidence            579999999999999999999999999988754 8999998763       1 111   1 11                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          |             ++.++|+.+++ ++|+++.+..|..+.+++...|++.+
T Consensus        64 ----~-------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        64 ----Y-------------GIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             ----c-------------CCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence                1             67778999999 78999999889888888999888754

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.34  E-value=1.3e-12  Score=93.42  Aligned_cols=47  Identities=11%  Similarity=0.130  Sum_probs=36.6

Q ss_pred             CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+..+||+++|+||++||++|+...|.+.+..+.... +..++.|.+|
T Consensus        14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd   60 (117)
T cd02959          14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE   60 (117)
T ss_pred             HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence            3445789999999999999999999999997765543 2456666665

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.33  E-value=1.5e-11  Score=87.82  Aligned_cols=88  Identities=14%  Similarity=0.178  Sum_probs=70.4

Q ss_pred             CCEEEEEEcccCCCC--Ch--HhHHHHHHHHHHH-hcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           89 GKLLLIVNVASQCGL--TN--SNYTELSQLYDKY-KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        89 gk~vlv~F~~twC~~--C~--~~~~~l~~l~~~~-~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      ..++|++||++||++  |+  ...|.+.++.+++ ++.++.+..|++|.       . .++.    ++            
T Consensus        27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------~-~~La----~~------------   82 (120)
T cd03065          27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------D-AKVA----KK------------   82 (120)
T ss_pred             CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------C-HHHH----HH------------
Confidence            459999999999988  99  7778888888887 23359999999883       2 2222    11            


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                               |             +|.++||.+++ ++|+++. +.|..+.+.+.+.|++|+
T Consensus        83 ---------~-------------~I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          83 ---------L-------------GLDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ---------c-------------CCccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence                     2             88889999888 7899987 899999999999999886

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3.5e-11  Score=88.99  Aligned_cols=148  Identities=16%  Similarity=0.268  Sum_probs=103.7

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCC-EEEEE-EcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIV-NVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~-F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      +..|+.+|+|+..+..|+ +.+.||.|. |.|++ -.+...|+|..|+..+..++.||.++|+..+++|+|        +
T Consensus         6 l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d--------~   76 (224)
T KOG0854|consen    6 LRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD--------D   76 (224)
T ss_pred             ccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh--------h
Confidence            468999999999888886 899998765 65553 348899999999999999999999999999999999        4


Q ss_pred             HHHHHHHHH------hhc--CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC--
Q 027311          141 NEQIQEFAC------TRF--KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT--  210 (225)
Q Consensus       141 ~~~~~~~~~------~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~--  210 (225)
                      .+..+.|++      +..  ..+||++.  |. ..+..-.+.++.....+..|-+ ...-..|+||++.+|+-...-.  
T Consensus        77 vesH~~Wi~DIks~~~~~~~~~~yPIIa--D~-~rela~~l~MlD~~e~~~~~~~-~T~Ravfvi~pdkKirLs~lYP~t  152 (224)
T KOG0854|consen   77 VESHKDWIKDIKSYAKVKNHSVPYPIIA--DP-NRELAFLLNMLDPEEKKNIGDG-KTVRAVFVIDPDKKIRLSFLYPST  152 (224)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCeec--CC-chhhhhhhcccCHhHcCCCCCC-ceEEEEEEECCCceEEEEEEcccc
Confidence            444444431      222  37888873  33 3444555666655432222212 1234779999999998764322  


Q ss_pred             --CChhhHHHHHHhh
Q 027311          211 --TSPLSIEVVLECL  223 (225)
Q Consensus       211 --~~~~~l~~~l~~l  223 (225)
                        -+.+++...|+.|
T Consensus       153 tGRN~dEiLRvidsL  167 (224)
T KOG0854|consen  153 TGRNFDEILRVIDSL  167 (224)
T ss_pred             cCcCHHHHHHHHHHH
Confidence              2345677777665

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.33  E-value=5.7e-12  Score=88.78  Aligned_cols=85  Identities=19%  Similarity=0.244  Sum_probs=63.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-----CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-----GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-----~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .+++++|.||++||++|+...|.++++.+++++.     .+.+..|+.|.       . .++   + ++           
T Consensus        17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-------~-~~l---~-~~-----------   73 (108)
T cd02996          17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-------E-SDI---A-DR-----------   73 (108)
T ss_pred             cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-------C-HHH---H-Hh-----------
Confidence            4689999999999999999999999999887532     37777787763       1 111   1 11           


Q ss_pred             cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHH
Q 027311          163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVV  219 (225)
Q Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~  219 (225)
                                |             ++.++|++++. ++|++ ...+.|..+.+++.+.
T Consensus        74 ----------~-------------~v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~f  107 (108)
T cd02996          74 ----------Y-------------RINKYPTLKLF-RNGMMMKREYRGQRSVEALAEF  107 (108)
T ss_pred             ----------C-------------CCCcCCEEEEE-eCCcCcceecCCCCCHHHHHhh
Confidence                      2             77888999888 78884 4677787777766654

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.32  E-value=1.3e-11  Score=85.69  Aligned_cols=87  Identities=20%  Similarity=0.343  Sum_probs=72.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++++||.||++||++|+...|.+.++.+++++ ++.++.|..+.       . ..   .+ ++                
T Consensus        16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~-~~---l~-~~----------------   66 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N-KE---LC-KK----------------   66 (103)
T ss_dssp             TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S-HH---HH-HH----------------
T ss_pred             cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c-ch---hh-hc----------------
Confidence            368999999999999999999999999999987 69999998763       2 11   11 21                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                           |             ++.++|+.+++ ++|+...++.|..+.++|.+.|++
T Consensus        67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   67 -----Y-------------GVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             -----T-------------TCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred             -----c-------------CCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence                 2             77888998888 778888899999999999998875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.32  E-value=4.7e-12  Score=88.25  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=63.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      ++++++|.||++||++|+...|.++++.+++++. .+.++.|..+.      +....   .. +                
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~~~~~---~~-~----------------   69 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK------PEHDA---LK-E----------------   69 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC------CccHH---HH-H----------------
Confidence            5779999999999999999999999999998743 36666676542      00111   11 1                


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                           .|             ++.++|+.++. ++|+++.++.|..+.+++.+.
T Consensus        70 -----~~-------------~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~  103 (104)
T cd02997          70 -----EY-------------NVKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF  103 (104)
T ss_pred             -----hC-------------CCccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence                 11             77778986655 689999999998887776554

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.31  E-value=1.1e-11  Score=97.83  Aligned_cols=89  Identities=13%  Similarity=0.108  Sum_probs=69.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++++|.||++||++|+...|.++++.+++++. +.+..|..+.        ..+   .. +                 
T Consensus        51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~--------~~~---l~-~-----------------  100 (224)
T PTZ00443         51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR--------ALN---LA-K-----------------  100 (224)
T ss_pred             CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc--------cHH---HH-H-----------------
Confidence            3579999999999999999999999999999864 7777665542        111   11 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             +|.++|++++++ +|+++.+..|..+.+++.+.+.+.+
T Consensus       101 ----~~-------------~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~  139 (224)
T PTZ00443        101 ----RF-------------AIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDF  139 (224)
T ss_pred             ----Hc-------------CCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence                12             788899999997 7999888888888888888877653

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.31  E-value=1.3e-11  Score=91.91  Aligned_cols=81  Identities=16%  Similarity=0.070  Sum_probs=62.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++++++|+||++||++|+...|.++++.+++++.+++++.|++|.       .. ++.    +++++.-           
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-------~~-~la----~~~~V~~-----------  102 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-------FP-NVA----EKFRVST-----------  102 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-------CH-HHH----HHcCcee-----------
Confidence            467999999999999999999999999999986679999999884       22 222    2222110           


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                          .|             ++.++||+++. ++|+.+.+..|
T Consensus       103 ----~~-------------~v~~~PT~ilf-~~Gk~v~r~~G  126 (152)
T cd02962         103 ----SP-------------LSKQLPTIILF-QGGKEVARRPY  126 (152)
T ss_pred             ----cC-------------CcCCCCEEEEE-ECCEEEEEEec
Confidence                01             56678998888 68999999886

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.28  E-value=1.8e-11  Score=85.80  Aligned_cols=43  Identities=12%  Similarity=0.015  Sum_probs=39.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+|+|||.|+++||++|+..-|.+.++.+++++. +.++.|.+|
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD   55 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD   55 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence            5899999999999999999999999999999755 888888877

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.28  E-value=1.6e-11  Score=109.91  Aligned_cols=97  Identities=14%  Similarity=0.102  Sum_probs=73.7

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK  161 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
                      +..+||+++|+||++||++|+...+..   .+++++++  ++.++.|++++       +.++..+.+ ++          
T Consensus       470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~----------  529 (571)
T PRK00293        470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KH----------  529 (571)
T ss_pred             HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HH----------
Confidence            445699999999999999999877764   56777774  48888888763       222223332 21          


Q ss_pred             ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE--EEcCCCCChhhHHHHHHhhhC
Q 027311          162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV--ERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~--~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                 |             ++.++|+++++|++|+++  .++.|..+.+++.+.|+++.+
T Consensus       530 -----------~-------------~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~~  571 (571)
T PRK00293        530 -----------Y-------------NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP  571 (571)
T ss_pred             -----------c-------------CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhcC
Confidence                       2             777889999999999984  688899999999999998754

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.28  E-value=2.9e-11  Score=83.27  Aligned_cols=83  Identities=13%  Similarity=0.180  Sum_probs=61.6

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++++|.||++||++|+...+.|+++.+++. .++.++.|..+.       . .+   .. ++                 
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~~~-------~-~~---~~-~~-----------------   63 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEAEE-------L-PE---IS-EK-----------------   63 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEcccc-------C-HH---HH-Hh-----------------
Confidence            6899999999999999999999999999973 348888776441       1 11   11 11                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                          |             ++.++|+++++ ++|+++.+..|.. ++++.+.|
T Consensus        64 ----~-------------~i~~~Pt~~~~-~~g~~~~~~~g~~-~~~l~~~~   96 (97)
T cd02984          64 ----F-------------EITAVPTFVFF-RNGTIVDRVSGAD-PKELAKKV   96 (97)
T ss_pred             ----c-------------CCccccEEEEE-ECCEEEEEEeCCC-HHHHHHhh
Confidence                2             67778998888 5899999988853 45555544

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.27  E-value=4.5e-11  Score=83.77  Aligned_cols=82  Identities=10%  Similarity=0.108  Sum_probs=67.0

Q ss_pred             CCCEEEEEEcccC--CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQ--CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~tw--C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      .|.++||.||++|  ||.|....|.+.++.++|+++ +.++.|++|+       .. ++.    .+              
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~-~la----~~--------------   78 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ-ALA----AR--------------   78 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH-HHH----HH--------------
Confidence            5679999999997  999999999999999999876 8888898874       22 222    11              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE  217 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~  217 (225)
                             |             +|.++||.+++ ++|+++.+..|..+.+++.
T Consensus        79 -------f-------------~V~sIPTli~f-kdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          79 -------F-------------GVLRTPALLFF-RDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             -------c-------------CCCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence                   2             88889998888 7899999999988777664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.26  E-value=2.3e-11  Score=84.82  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+++++|.||++||++|+...+.+.++.++++. .++.++.|+.+.       ...   ..+ +                
T Consensus        17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~~~---~~~-~----------------   69 (105)
T cd02998          17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------ANK---DLA-K----------------   69 (105)
T ss_pred             CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------cch---hhH-H----------------
Confidence            367999999999999999999999999999973 358888887652       011   111 1                


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                           .|             ++.++|+++++++.|+....+.|..+.+++.+.
T Consensus        70 -----~~-------------~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~  104 (105)
T cd02998          70 -----KY-------------GVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF  104 (105)
T ss_pred             -----hC-------------CCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence                 12             677889999999887777788887777776654

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PTZ00051 thioredoxin; Provisional

Probab=99.26  E-value=3.8e-11  Score=82.92  Aligned_cols=80  Identities=14%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++++|.||++||++|+...+.+.++.+++.  ++.++.|+.+.        ...   .+ ++                
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~--------~~~---~~-~~----------------   66 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE--------LSE---VA-EK----------------   66 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc--------hHH---HH-HH----------------
Confidence            47899999999999999999999999999875  37788787552        111   11 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE  217 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~  217 (225)
                           |             ++.++|+++++ ++|+++.++.|. ..+++.
T Consensus        67 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         67 -----E-------------NITSMPTFKVF-KNGSVVDTLLGA-NDEALK   96 (98)
T ss_pred             -----C-------------CCceeeEEEEE-eCCeEEEEEeCC-CHHHhh
Confidence                 2             77778996655 899999999985 344443

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.24  E-value=1.7e-11  Score=84.42  Aligned_cols=86  Identities=16%  Similarity=0.228  Sum_probs=66.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHh-cCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      ++++++|.||++||+.|+...+.++++.+.++ +.++.++.|+.+.        ..   +.. ++               
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~---~~~-~~---------------   66 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--------NN---DLC-SE---------------   66 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--------hH---HHH-Hh---------------
Confidence            46699999999999999999999999999995 4458888887651        11   111 11               


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                            |             ++.++|++++++++|....++.|..+.+++.+.
T Consensus        67 ------~-------------~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~  100 (101)
T cd02961          67 ------Y-------------GVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF  100 (101)
T ss_pred             ------C-------------CCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence                  2             777789999999887888888887777666553

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.24  E-value=1e-10  Score=83.14  Aligned_cols=88  Identities=13%  Similarity=0.245  Sum_probs=66.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +++.++|+||++||++|+...+.++++.+++ + .+.+..|..|.       . .++.    +                 
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~-------~-~~l~----~-----------------   69 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDE-------D-KEKA----E-----------------   69 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCc-------C-HHHH----H-----------------
Confidence            3567889999999999999999999999887 3 38888888763       1 1111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCC---CcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE---GNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~---G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|++++.+..   |.+  ++.|..+..++.+.|+.++|
T Consensus        70 ----~~-------------~v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          70 ----KY-------------GVERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             ----Hc-------------CCCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHh
Confidence                12             78888998888653   333  56677778899999999875

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.22  E-value=9.8e-11  Score=81.45  Aligned_cols=85  Identities=13%  Similarity=0.146  Sum_probs=64.0

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++++|.||++||++|+...|.+.++.++++.. +.+..+..|.        ..++.    ++                 
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~~--------~~~~~----~~-----------------   67 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADV--------HQSLA----QQ-----------------   67 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECcc--------hHHHH----HH-----------------
Confidence            567999999999999999999999999998764 8888887652        12111    11                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                          |             ++.++|+++++++.......+.|..+.+++.+.+
T Consensus        68 ----~-------------~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          68 ----Y-------------GVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             ----C-------------CCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence                1             7777899999976545566787877777776543

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.20  E-value=2.3e-10  Score=76.27  Aligned_cols=81  Identities=7%  Similarity=0.128  Sum_probs=61.0

Q ss_pred             EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchh
Q 027311           92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAP  171 (225)
Q Consensus        92 vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  171 (225)
                      .|..||++||++|+...+.++++.++++.. +.++.|+.+.       ..+..     ++                    
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~~~-----~~--------------------   48 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQKA-----ME--------------------   48 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHHHH-----HH--------------------
Confidence            456799999999999999999999998754 8888887653       22111     11                    


Q ss_pred             hhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          172 LYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                       |             ++.++|+.++   +|++  ++.|..+.+++.+.|+++|
T Consensus        49 -~-------------~v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~   82 (82)
T TIGR00411        49 -Y-------------GIMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL   82 (82)
T ss_pred             -c-------------CCccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence             2             7778899765   5664  5667778899999998765

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.17  E-value=1.2e-10  Score=81.01  Aligned_cols=56  Identities=20%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             CCCCCeecCCc-cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecC
Q 027311           76 DAKGQDVDLSI-YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCN  131 (225)
Q Consensus        76 ~~~G~~~~l~~-~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d  131 (225)
                      +++|+.+.-.- -.|++++|.||++||++|+...|.+.++.+++++ ..+.+..|+.+
T Consensus         4 ~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~   61 (104)
T cd02995           4 VVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT   61 (104)
T ss_pred             EEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence            44455443221 2368999999999999999999999999999976 35788877765

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.16  E-value=4.1e-10  Score=81.05  Aligned_cols=86  Identities=6%  Similarity=-0.062  Sum_probs=56.3

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHH-H--HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTE-L--SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~-l--~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .-+||+|+|+|+++||+.|+..-+. +  .++.+.+.+ ++.+|-|..+.       .++..+.+. +.           
T Consensus        12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~-------~~~~~~~~~-~~-----------   71 (124)
T cd02955          12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREE-------RPDVDKIYM-NA-----------   71 (124)
T ss_pred             HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCc-------CcHHHHHHH-HH-----------
Confidence            3468999999999999999977653 2  256665543 47777776552       222212221 10           


Q ss_pred             cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                            ....|             ++.++|+++++|++|++++...+.
T Consensus        72 ------~~~~~-------------~~~G~Pt~vfl~~~G~~~~~~~~~  100 (124)
T cd02955          72 ------AQAMT-------------GQGGWPLNVFLTPDLKPFFGGTYF  100 (124)
T ss_pred             ------HHHhc-------------CCCCCCEEEEECCCCCEEeeeeec
Confidence                  01112             677889999999999999876543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.15  E-value=2e-10  Score=81.55  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=57.0

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++++|.||++||++|+...|.++++.+++++  +.++.|+.+.        .    ..+ ++                 
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~--------~----~l~-~~-----------------   71 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEK--------A----FLV-NY-----------------   71 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchh--------h----HHH-Hh-----------------
Confidence            58999999999999999999999999999863  7888887652        1    221 21                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                          |             ++.++|+.+++ ++|+++.+..|.
T Consensus        72 ----~-------------~i~~~Pt~~~f-~~G~~v~~~~G~   95 (113)
T cd02957          72 ----L-------------DIKVLPTLLVY-KNGELIDNIVGF   95 (113)
T ss_pred             ----c-------------CCCcCCEEEEE-ECCEEEEEEecH
Confidence                2             77788987777 789999998773

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PTZ00102 disulphide isomerase; Provisional

Probab=99.12  E-value=1.8e-10  Score=101.38  Aligned_cols=105  Identities=16%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             EeCCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311           74 VKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTR  151 (225)
Q Consensus        74 l~~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~  151 (225)
                      ++.+.|+.+.-. .-.||+++|.||++||++|+...|.++++.+++++. .+.+..|+.|.        .+.        
T Consensus       359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------~~~--------  422 (477)
T PTZ00102        359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------NET--------  422 (477)
T ss_pred             eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC--------Ccc--------
Confidence            555566655533 235899999999999999999999999999998764 36677676552        000        


Q ss_pred             cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                       ....|             +++++|+.++++++|++..++.|..+.+.+.+.|++..
T Consensus       423 -----------------~~~~~-------------~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  465 (477)
T PTZ00102        423 -----------------PLEEF-------------SWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHA  465 (477)
T ss_pred             -----------------chhcC-------------CCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcC
Confidence                             00011             67788999999998887678899889999999888754

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.12  E-value=4.5e-10  Score=79.79  Aligned_cols=74  Identities=14%  Similarity=0.069  Sum_probs=58.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++++++|.||++||++|+...|.+.++.+++++  +.++.|.+|.        ..++.    ++                
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~--------~~~l~----~~----------------   70 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEK--------APFLV----EK----------------   70 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEccc--------CHHHH----HH----------------
Confidence            467999999999999999999999999999864  8888888763        12111    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                           |             ++.++|+.+++ ++|+.+.+..|.
T Consensus        71 -----~-------------~v~~vPt~l~f-k~G~~v~~~~g~   94 (113)
T cd02989          71 -----L-------------NIKVLPTVILF-KNGKTVDRIVGF   94 (113)
T ss_pred             -----C-------------CCccCCEEEEE-ECCEEEEEEECc
Confidence                 2             77788998877 789999887654

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.08  E-value=1.4e-09  Score=73.28  Aligned_cols=83  Identities=17%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++++|.||++||+.|....+.++++.++  ..++.++.|+.+.       . .++   . ++                 
T Consensus        10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------~-~~~---~-~~-----------------   58 (93)
T cd02947          10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------N-PEL---A-EE-----------------   58 (93)
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------C-hhH---H-Hh-----------------
Confidence            37999999999999999999999999988  3458999888762       1 111   1 11                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                          |             ++.++|+++++ ++|+++..+.|..+.+++.+.|
T Consensus        59 ----~-------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          59 ----Y-------------GVRSIPTFLFF-KNGKEVDRVVGADPKEELEEFL   92 (93)
T ss_pred             ----c-------------CcccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence                1             66778998888 5688888888877767776655

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.06  E-value=1.1e-09  Score=83.61  Aligned_cols=72  Identities=7%  Similarity=0.078  Sum_probs=56.8

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++|||+||++||++|+...|.|.++.++|..  +.++-|++|.        .    ..+ .+                 
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~--------~----~l~-~~-----------------  130 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASA--------T----GAS-DE-----------------  130 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccc--------h----hhH-Hh-----------------
Confidence            45999999999999999999999999999863  8899888652        1    111 11                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                          |             ++.++|+++++ ++|+++.+..|.
T Consensus       131 ----f-------------~v~~vPTllly-k~G~~v~~~vG~  154 (175)
T cd02987         131 ----F-------------DTDALPALLVY-KGGELIGNFVRV  154 (175)
T ss_pred             ----C-------------CCCCCCEEEEE-ECCEEEEEEech
Confidence                2             67778998887 789999887653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.04  E-value=1.2e-09  Score=94.66  Aligned_cols=92  Identities=16%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +++++||+||++||++|+...|.++++.+++++.++.++.|++|.       +...   .+.++                
T Consensus       370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~-------~~~~---~~~~~----------------  423 (463)
T TIGR00424       370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG-------DQKE---FAKQE----------------  423 (463)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC-------CccH---HHHHH----------------
Confidence            688999999999999999999999999999987778999998873       1111   11011                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC-CCCChhhHHHHHHhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA-PTTSPLSIEVVLECL  223 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~-g~~~~~~l~~~l~~l  223 (225)
                           |             +|.++|+++++.+.+.-...|. |..+.+.|...|+.|
T Consensus       424 -----~-------------~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~  462 (463)
T TIGR00424       424 -----L-------------QLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL  462 (463)
T ss_pred             -----c-------------CCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence                 2             6777899888855443223454 467788888888765

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.02  E-value=1.8e-09  Score=83.67  Aligned_cols=81  Identities=16%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++|||+||++||++|+...+.|+++.++|..  +.++.|.++.           .   . .+                 
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~-----------~---~-~~-----------------  147 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQ-----------C---I-PN-----------------  147 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHH-----------h---H-hh-----------------
Confidence            46999999999999999999999999999963  8898887541           0   1 11                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-------CChhhHHHHHH
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-------TSPLSIEVVLE  221 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-------~~~~~l~~~l~  221 (225)
                          |             ++.++|+++++ ++|+++.+..|.       ++.++++..|.
T Consensus       148 ----~-------------~i~~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~  189 (192)
T cd02988         148 ----Y-------------PDKNLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLLV  189 (192)
T ss_pred             ----C-------------CCCCCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence                2             67778997777 899999998773       34455665554

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.02  E-value=1.1e-09  Score=78.09  Aligned_cols=44  Identities=11%  Similarity=0.099  Sum_probs=39.9

Q ss_pred             CCCEEEEEEcc-------cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           88 KGKLLLIVNVA-------SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        88 ~gk~vlv~F~~-------twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      +|++++|.|||       +||++|+...|.++++.++++++ +.++.|.+|+
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~-v~fv~Vdvd~   70 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED-CVFIYCDVGD   70 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC-CEEEEEEcCC
Confidence            58999999999       99999999999999999999744 8999999873

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.97  E-value=5e-09  Score=82.23  Aligned_cols=145  Identities=15%  Similarity=0.204  Sum_probs=103.0

Q ss_pred             cccccCCCceecCeEEeCCCCCe-ecCCccC--CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC---
Q 027311           59 HTMASQSKTSVHDFSVKDAKGQD-VDLSIYK--GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ---  132 (225)
Q Consensus        59 ~~~~~~~g~~~p~f~l~~~~G~~-~~l~~~~--gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~---  132 (225)
                      .......|..+||..+.+.+|+. .++-|+.  ++|+||+|.+-.||+=+..+..++++.++|.+. +.++.|-+.+   
T Consensus        69 l~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp  147 (237)
T PF00837_consen   69 LFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP  147 (237)
T ss_pred             cccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence            34456899999999999999998 9999984  689999999889999999999999999999975 5555554432   


Q ss_pred             ----------CCCCCCCCHHH---HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccce-eEEEEC
Q 027311          133 ----------FGAQEPGDNEQ---IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNF-SKFLVD  198 (225)
Q Consensus       133 ----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P-~~~lid  198 (225)
                                +..+.+.+.++   ..+.+ .++....|++  .|.........|+.               .| ..||| 
T Consensus       148 sDgW~~~~~~~~i~qh~sledR~~aA~~l-~~~~~~~pi~--vD~mdN~~~~~YgA---------------~PeRlyIi-  208 (237)
T PF00837_consen  148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLL-KEEFPQCPIV--VDTMDNNFNKAYGA---------------LPERLYII-  208 (237)
T ss_pred             CCCccCCCCceeecCCCCHHHHHHHHHHH-HhhCCCCCEE--EEccCCHHHHHhCC---------------CcceEEEE-
Confidence                      12223333332   22223 2334678877  56665666666633               34 55777 


Q ss_pred             CCCcEEEEcCCC---CChhhHHHHHHhh
Q 027311          199 KEGNVVERYAPT---TSPLSIEVVLECL  223 (225)
Q Consensus       199 ~~G~I~~~~~g~---~~~~~l~~~l~~l  223 (225)
                      ++|+|++.....   -.++++++.|++.
T Consensus       209 ~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~  236 (237)
T PF00837_consen  209 QDGKVVYKGGPGPFGYSPEELREWLEKY  236 (237)
T ss_pred             ECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence            699999875432   2567899998874

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PLN02309 5'-adenylylsulfate reductase

Probab=98.97  E-value=4.1e-09  Score=91.33  Aligned_cols=92  Identities=18%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||++||.||++||++|+...|.+.++.++++..++.+..|+.|.       ...   ..+.++                
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~~~---~la~~~----------------  417 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------DQK---EFAKQE----------------  417 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------cch---HHHHhh----------------
Confidence            688999999999999999999999999999987789999998762       111   111011                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC-CCCChhhHHHHHHhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA-PTTSPLSIEVVLECL  223 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~-g~~~~~~l~~~l~~l  223 (225)
                           |             +|.++||++++.+...-...|. +.-+.+.|...|++|
T Consensus       418 -----~-------------~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        418 -----L-------------QLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             -----C-------------CCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence                 1             7778899999855443333454 456778888888775

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.96  E-value=4.2e-09  Score=69.33  Aligned_cols=36  Identities=8%  Similarity=0.063  Sum_probs=30.5

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP  129 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is  129 (225)
                      .|.||++|||+|....|.++++.++++.+ +.++-|.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~   37 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT   37 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence            37899999999999999999999998755 7776553

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=98.96  E-value=4.3e-09  Score=74.85  Aligned_cols=43  Identities=19%  Similarity=0.225  Sum_probs=36.1

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCN  131 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d  131 (225)
                      +++++|.||++||++|+...|.++++.+++++.  .+.+..|+.+
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~   63 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA   63 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence            479999999999999999999999999998753  2667667653

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.95  E-value=2.2e-09  Score=93.90  Aligned_cols=90  Identities=17%  Similarity=0.272  Sum_probs=69.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      ++++++|.||++||++|+...|.+.++.+.+.+.+  +.++.|..+.       . .++   + ++              
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~-~~l---~-~~--------------   70 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E-KDL---A-QK--------------   70 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c-HHH---H-Hh--------------
Confidence            57899999999999999999999999999887665  7788787652       1 111   1 11              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHHHHhhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~l~~ll  224 (225)
                             |             ++.++|+.+++ ++|+. +..+.|..+.+.+.+.+.+++
T Consensus        71 -------~-------------~i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~  109 (462)
T TIGR01130        71 -------Y-------------GVSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS  109 (462)
T ss_pred             -------C-------------CCccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence                   2             77778988887 56776 678888888888888887764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.95  E-value=1.8e-08  Score=71.57  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=67.7

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHH-H--HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTE-L--SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK  161 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~-l--~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
                      +.-++|+++|+|+++||+.|...... +  .++.+.+.+ ++..+.+.++        + .+..+++ .           
T Consensus        13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~-----------   70 (114)
T cd02958          13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-Q-----------   70 (114)
T ss_pred             HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-H-----------
Confidence            33468999999999999999976543 2  245555543 3666655543        1 1122222 1           


Q ss_pred             ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECC-CCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                .|             ++.++|+.+++|+ +|+++.+..|..+++++.+.|++..
T Consensus        71 ----------~~-------------~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          71 ----------SY-------------KVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             ----------Hh-------------CccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence                      12             5667899999999 8999999999999999999988764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.92  E-value=6.9e-09  Score=72.12  Aligned_cols=89  Identities=15%  Similarity=0.140  Sum_probs=64.7

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      |+++++.|+++||++|....+.+.++.++++++ +.++.|+.|.           ..+.+ +.+                
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~-----------~~~~~-~~~----------------   62 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD-----------FGRHL-EYF----------------   62 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh-----------hHHHH-HHc----------------
Confidence            789999999999999999999999999999866 8888887652           11222 221                


Q ss_pred             chhhhhhccccCCCCCCCccc--cceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhh
Q 027311          169 AAPLYKHLKSSKGGLFGDSIK--WNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~--~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                        ++.  ++|+.++++.. |.......+..+.+.+.+.|+.++
T Consensus        63 ------------------~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~~  103 (103)
T cd02982          63 ------------------GLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL  103 (103)
T ss_pred             ------------------CCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhhC
Confidence                              444  57888888763 544334444457888888887653

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PTZ00102 disulphide isomerase; Provisional

Probab=98.88  E-value=6.3e-09  Score=91.65  Aligned_cols=89  Identities=13%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +++.++|.||++||++|+...|.+.++.+++++.  ++.+..|..+.        ..++   + ++              
T Consensus        48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~--------~~~l---~-~~--------------  101 (477)
T PTZ00102         48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE--------EMEL---A-QE--------------  101 (477)
T ss_pred             cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC--------CHHH---H-Hh--------------
Confidence            5789999999999999999999999999888654  36677666542        1111   1 11              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                             |             ++.++|+.++++..+ .+ .+.|..+.+.+.+.+++++
T Consensus       102 -------~-------------~i~~~Pt~~~~~~g~-~~-~y~g~~~~~~l~~~l~~~~  138 (477)
T PTZ00102        102 -------F-------------GVRGYPTIKFFNKGN-PV-NYSGGRTADGIVSWIKKLT  138 (477)
T ss_pred             -------c-------------CCCcccEEEEEECCc-eE-EecCCCCHHHHHHHHHHhh
Confidence                   2             777889999997654 44 7888888889999888765

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.8e-08  Score=78.99  Aligned_cols=90  Identities=19%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      |+.-.||.++|+|.|+||++|+...|.+.++..+|++  ..++-|.+|           +.+.-+ .             
T Consensus        16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd-----------~c~~ta-a-------------   68 (288)
T KOG0908|consen   16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD-----------ECRGTA-A-------------   68 (288)
T ss_pred             hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH-----------Hhhchh-h-------------
Confidence            4444689999999999999999999999999999954  788888765           222111 0             


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                                           +++|.+.||.++. ++|+-+.+..|. ++.-|++.+++.
T Consensus        69 ---------------------~~gV~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~  105 (288)
T KOG0908|consen   69 ---------------------TNGVNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKY  105 (288)
T ss_pred             ---------------------hcCcccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHH
Confidence                                 1288889996666 889988888874 344577776654

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.83  E-value=1.2e-08  Score=80.45  Aligned_cols=100  Identities=21%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             cCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311           83 DLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus        83 ~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .+.+..+++-|+.|+.+.|+.|....|.|+.+.++|   |+.|+.||+|.                  ..-..||..   
T Consensus       114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG------------------~~~~~fp~~---  169 (215)
T PF13728_consen  114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDG------------------RPIPSFPNP---  169 (215)
T ss_pred             HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCC------------------CCCcCCCCC---
Confidence            355667889999999999999999999999999998   49999999983                  101122222   


Q ss_pred             cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCC-cEEEEcCCCCChhhHHHHH
Q 027311          163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-NVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G-~I~~~~~g~~~~~~l~~~l  220 (225)
                      ..+.. ..+.+             ++..+|++|||++++ ++.-...|..+.++|.+.|
T Consensus       170 ~~~~g-~~~~l-------------~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  170 RPDPG-QAKRL-------------GVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             CCCHH-HHHHc-------------CCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence            11111 11112             788899999999988 6656677888888887754

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.81  E-value=1.8e-08  Score=80.91  Aligned_cols=103  Identities=8%  Similarity=0.095  Sum_probs=76.3

Q ss_pred             CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      +.++.+++-|++|+.+.|+.|....|.++.+.++|+   +.++.||+|.                  .....||..   .
T Consensus       145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG------------------~~~p~fp~~---~  200 (256)
T TIGR02739       145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDG------------------TLIPGLPNS---R  200 (256)
T ss_pred             HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCC------------------CCCCCCCCc---c
Confidence            455567899999999999999999999999999985   9999999983                  111123332   1


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhh
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      .+.....+ +             ++..+|++|||+++ +++.-...|.++.++|.+.|..++
T Consensus       201 ~d~gqa~~-l-------------~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       201 SDSGQAQH-L-------------GVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             CChHHHHh-c-------------CCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence            11111111 1             78889999999999 666566788999999988887654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PTZ00062 glutaredoxin; Provisional

Probab=98.81  E-value=3e-08  Score=77.25  Aligned_cols=76  Identities=7%  Similarity=-0.022  Sum_probs=60.5

Q ss_pred             CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCc
Q 027311           90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNA  169 (225)
Q Consensus        90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  169 (225)
                      ..+|++||++|||+|+...+.|.++.++|++  +.++.|+.|                                      
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d--------------------------------------   57 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA--------------------------------------   57 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc--------------------------------------
Confidence            4678999999999999999999999999964  777777411                                      


Q ss_pred             hhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          170 APLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                         |             +|.++|+.+++ ++|+++.+..|.. +.++...+++.
T Consensus        58 ---~-------------~V~~vPtfv~~-~~g~~i~r~~G~~-~~~~~~~~~~~   93 (204)
T PTZ00062         58 ---D-------------ANNEYGVFEFY-QNSQLINSLEGCN-TSTLVSFIRGW   93 (204)
T ss_pred             ---c-------------CcccceEEEEE-ECCEEEeeeeCCC-HHHHHHHHHHH
Confidence               2             78889998888 7999999988754 55666666543

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.80  E-value=3.2e-08  Score=78.24  Aligned_cols=91  Identities=14%  Similarity=0.261  Sum_probs=63.8

Q ss_pred             cCCCEEEEEEcc---cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           87 YKGKLLLIVNVA---SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        87 ~~gk~vlv~F~~---twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      .++...++.|.+   +||++|+...|.+.++.+++.+  +++..+.+|.      +...++   + +             
T Consensus        17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~------~~~~~l---~-~-------------   71 (215)
T TIGR02187        17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT------PEDKEE---A-E-------------   71 (215)
T ss_pred             cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC------cccHHH---H-H-------------
Confidence            344455656777   9999999999999999999853  5555565552      011111   1 1             


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE-EEcCCCCChhhHHHHHHhhh
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV-ERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~-~~~~g~~~~~~l~~~l~~ll  224 (225)
                              .|             +|.++|+.++++ +|+.+ .++.|..+.+++.+.|+.++
T Consensus        72 --------~~-------------~V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~  111 (215)
T TIGR02187        72 --------KY-------------GVERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIV  111 (215)
T ss_pred             --------Hc-------------CCCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHH
Confidence                    12             788899988885 57776 48889888888888888775

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.76  E-value=3.2e-08  Score=79.11  Aligned_cols=103  Identities=12%  Similarity=0.099  Sum_probs=76.2

Q ss_pred             CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      +.++.+++-|++|+.+.||.|....|.++.+.++|+   +.|+.||+|.                  .....||..   .
T Consensus       138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG------------------~~~p~fp~~---~  193 (248)
T PRK13703        138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDG------------------VINPLLPDS---R  193 (248)
T ss_pred             HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCC------------------CCCCCCCCC---c
Confidence            455567899999999999999999999999999985   8999999983                  111123322   1


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCC-cEEEEcCCCCChhhHHHHHHhhh
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-NVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G-~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      .+.....+ +             ++..+|++|||+++. ++.-...|..+.++|.+.|..+.
T Consensus       194 ~d~gqa~~-l-------------~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        194 TDQGQAQR-L-------------GVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             cChhHHHh-c-------------CCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence            11111111 1             788899999999996 66667888999999988887653

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.66  E-value=1.3e-07  Score=82.73  Aligned_cols=88  Identities=15%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-C-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-Q-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      .++.++|.||++||++|+...|.++++.+++++ . ++.++.|+.+.       +          .      .       
T Consensus       363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-------n----------~------~-------  412 (462)
T TIGR01130       363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-------N----------D------V-------  412 (462)
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-------C----------c------c-------
Confidence            478999999999999999999999999999987 2 58888887652       0          0      0       


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHHHHhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~l~~l  223 (225)
                          .. +             ++.++|+.++.++.++. ...+.|..+.+.+.+.|++.
T Consensus       413 ----~~-~-------------~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  453 (462)
T TIGR01130       413 ----PP-F-------------EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH  453 (462)
T ss_pred             ----CC-C-------------CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence                00 1             67778999999766652 35677777888888888764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.64  E-value=1.9e-07  Score=67.39  Aligned_cols=77  Identities=9%  Similarity=0.144  Sum_probs=49.5

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHH---HHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~---~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      -+||+++|+|++.||++|+..-..+-   ++.+...+ ++.+|-+..|.       + +       ..  .        .
T Consensus        21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~-------t-d-------~~--~--------~   74 (130)
T cd02960          21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHET-------T-D-------KN--L--------S   74 (130)
T ss_pred             HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEecc-------C-C-------CC--c--------C
Confidence            36999999999999999998776542   34444433 35444444331       0 0       00  0        0


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                      ..                     + .++|+++++|++|+++.+..|..
T Consensus        75 ~~---------------------g-~~vPtivFld~~g~vi~~i~Gy~  100 (130)
T cd02960          75 PD---------------------G-QYVPRIMFVDPSLTVRADITGRY  100 (130)
T ss_pred             cc---------------------C-cccCeEEEECCCCCCcccccccc
Confidence            00                     2 24799999999999998877754

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.64  E-value=2.4e-07  Score=73.25  Aligned_cols=83  Identities=7%  Similarity=0.016  Sum_probs=56.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++.++|+.||++||++|....+.++++..++.  .+.+.-|..|.       ..+ +.    ++                
T Consensus       132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~-------~~~-~~----~~----------------  181 (215)
T TIGR02187       132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANE-------NPD-LA----EK----------------  181 (215)
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCC-------CHH-HH----HH----------------
Confidence            44456666999999999988888888887743  37776666552       111 11    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                           |             ++.++|++++ +++|+.   +.|..+.+++.+.|.+
T Consensus       182 -----~-------------~V~~vPtl~i-~~~~~~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       182 -----Y-------------GVMSVPKIVI-NKGVEE---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             -----h-------------CCccCCEEEE-ecCCEE---EECCCCHHHHHHHHHh
Confidence                 2             7788899665 466763   6677777788877764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.56  E-value=6.2e-07  Score=60.74  Aligned_cols=45  Identities=11%  Similarity=0.028  Sum_probs=37.1

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .++++.+-+..|+++||++|....+.++++.+++.  ++.+..+..|
T Consensus         8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~   52 (89)
T cd03026           8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA   52 (89)
T ss_pred             HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH
Confidence            45677788888999999999999999999998775  3777777655

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PHA02125 thioredoxin-like protein

Probab=98.55  E-value=4.9e-07  Score=59.22  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=19.2

Q ss_pred             EEEEcccCCCCChHhHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQL  114 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l  114 (225)
                      ++.|+++||++|+...|.|+++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~   23 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANV   23 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHH
Confidence            6889999999999988888654

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.50  E-value=1.1e-06  Score=56.00  Aligned_cols=38  Identities=8%  Similarity=0.063  Sum_probs=30.9

Q ss_pred             EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        92 vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      -+..|+++|||+|....+.++++.+++.  ++.+..+++|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~   39 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA   39 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence            3667999999999999999999977643  4888888766

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=98.49  E-value=1.1e-05  Score=59.55  Aligned_cols=143  Identities=18%  Similarity=0.226  Sum_probs=88.7

Q ss_pred             CCCceecCeEEeCC-----CCC-----eecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHH-HhcCCeEEEEE-ecC
Q 027311           64 QSKTSVHDFSVKDA-----KGQ-----DVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDK-YKNQGLEILAF-PCN  131 (225)
Q Consensus        64 ~~g~~~p~f~l~~~-----~G~-----~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~-~~~~~~~iv~I-s~d  131 (225)
                      ..|+++|...+.|-     +|.     .++.+.+.||+.+|...|-.-..--...|-+..+.+. ++....+..+| ++|
T Consensus         2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d   81 (160)
T PF09695_consen    2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD   81 (160)
T ss_pred             cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence            46778888777663     444     4455667899999988876544444455666666665 66555766664 565


Q ss_pred             CCCCCCCCCHHHHHHHHHhhcCCCcceeee-ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          132 QFGAQEPGDNEQIQEFACTRFKAEFPIFDK-VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                      +.   -..+.-=++..+ ++..-.||+-.. .|.+|. .+..|+.-..            .-.++++|++|+|++...|.
T Consensus        82 DA---i~gt~~fVrss~-e~~kk~~p~s~~vlD~~G~-~~~aW~L~~~------------~SaiiVlDK~G~V~F~k~G~  144 (160)
T PF09695_consen   82 DA---IWGTGGFVRSSA-EDSKKEFPWSQFVLDSNGV-VRKAWQLQEE------------SSAIIVLDKQGKVQFVKEGA  144 (160)
T ss_pred             cc---cccchHHHHHHH-HHhhhhCCCcEEEEcCCCc-eeccccCCCC------------CceEEEEcCCccEEEEECCC
Confidence            31   111344444444 333444554322 566664 3434422111            12568999999999999999


Q ss_pred             CChhhHHHHHHhh
Q 027311          211 TSPLSIEVVLECL  223 (225)
Q Consensus       211 ~~~~~l~~~l~~l  223 (225)
                      .+++++.+.|.-+
T Consensus       145 Ls~~Ev~qVi~Ll  157 (160)
T PF09695_consen  145 LSPAEVQQVIALL  157 (160)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999998887643

>smart00594 UAS UAS domain

Probab=98.48  E-value=1.6e-06  Score=62.38  Aligned_cols=89  Identities=12%  Similarity=0.106  Sum_probs=61.6

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      -+||.++|+|++.||+.|.......   .++.+.+.+ ++.++.+.++.        .+. .+.+ +             
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~--------~eg-~~l~-~-------------   80 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDT--------SEG-QRVS-Q-------------   80 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCC--------hhH-HHHH-H-------------
Confidence            3689999999999999999766542   234444443 46666665542        121 2222 1             


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCC-----cEEEEcCCCCChhhHHHHH
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG-----NVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G-----~I~~~~~g~~~~~~l~~~l  220 (225)
                              .|             ++.+.|+.+++|++|     .++.+..|..+++++...|
T Consensus        81 --------~~-------------~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       81 --------FY-------------KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             --------hc-------------CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence                    12             667789999999998     5778888999988887765

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.4e-06  Score=62.08  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=88.3

Q ss_pred             cCCCceecCeEEeCCCC-------CeecCCc-cCCCEEEE-EEcccCCCCChH-hHHHHHHHHHHHhcCCe-EEEEEecC
Q 027311           63 SQSKTSVHDFSVKDAKG-------QDVDLSI-YKGKLLLI-VNVASQCGLTNS-NYTELSQLYDKYKNQGL-EILAFPCN  131 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G-------~~~~l~~-~~gk~vlv-~F~~twC~~C~~-~~~~l~~l~~~~~~~~~-~iv~Is~d  131 (225)
                      ..+|+++|..++++.-+       ..++..+ ++||.|+| ...+...|.|.. .+|...+++++++.+|+ .|+.||++
T Consensus         3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN   82 (165)
T COG0678           3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN   82 (165)
T ss_pred             cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence            47899999988877633       2344445 57886555 466889999997 99999999999999997 57888887


Q ss_pred             CCCCCCCCCHHHHHHHHHhhcCCC--cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          132 QFGAQEPGDNEQIQEFACTRFKAE--FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                              +.-.+.+|. +..+..  ..++  .|.+++..+. .+.+-..  ...|.++++.-...|| +||.|...+..
T Consensus        83 --------D~FVm~AWa-k~~g~~~~I~fi--~Dg~geFTk~-~Gm~~d~--~~~g~G~RS~RYsmvV-~nGvV~~~~iE  147 (165)
T COG0678          83 --------DAFVMNAWA-KSQGGEGNIKFI--PDGNGEFTKA-MGMLVDK--SDLGFGVRSWRYSMVV-ENGVVEKLFIE  147 (165)
T ss_pred             --------cHHHHHHHH-HhcCCCccEEEe--cCCCchhhhh-cCceeec--ccCCcceeeeeEEEEE-eCCeEEEEEec
Confidence                    678888888 444444  3333  4544443332 2221111  1222367777777788 88999877654

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.43  E-value=1.5e-07  Score=68.29  Aligned_cols=81  Identities=16%  Similarity=0.256  Sum_probs=47.5

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      +....+..++.|..+|||-|...+|.|.++.+..++  +.+=-|+.|           +-.+.. ++             
T Consensus        37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-----------~~~el~-~~-------------   89 (129)
T PF14595_consen   37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-----------ENKELM-DQ-------------   89 (129)
T ss_dssp             HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-----------HHHHHT-TT-------------
T ss_pred             HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-----------CChhHH-HH-------------
Confidence            344566888889999999999999999999998753  444444433           222221 11             


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                              |..          .+..++|+++++|.+|+.+.++.++
T Consensus        90 --------~lt----------~g~~~IP~~I~~d~~~~~lg~wger  117 (129)
T PF14595_consen   90 --------YLT----------NGGRSIPTFIFLDKDGKELGRWGER  117 (129)
T ss_dssp             --------TTT-----------SS--SSEEEEE-TT--EEEEEESS
T ss_pred             --------HHh----------CCCeecCEEEEEcCCCCEeEEEcCC
Confidence                    000          0677799999999999999998775

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.2e-06  Score=76.12  Aligned_cols=88  Identities=15%  Similarity=0.238  Sum_probs=65.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      ....++|.|||+||.+|++..|++.+....++..  .+.+.-|...          ++ ...+ .+              
T Consensus        41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat----------~~-~~~~-~~--------------   94 (493)
T KOG0190|consen   41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT----------EE-SDLA-SK--------------   94 (493)
T ss_pred             cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc----------hh-hhhH-hh--------------
Confidence            4568999999999999999999999999999887  3555555322          11 2222 22              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                             |             +|+++||+-|. ++|+....|.|.-..+.+..++++
T Consensus        95 -------y-------------~v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~k  130 (493)
T KOG0190|consen   95 -------Y-------------EVRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKK  130 (493)
T ss_pred             -------h-------------cCCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHh
Confidence                   2             78888986666 899986778887778888887765

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.35  E-value=1.5e-06  Score=57.83  Aligned_cols=43  Identities=14%  Similarity=0.222  Sum_probs=33.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +||+++|+|+++||+.|+..-..+   .++.+.+.+ ++..+.|..+
T Consensus        16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~   61 (82)
T PF13899_consen   16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD   61 (82)
T ss_dssp             HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence            689999999999999999877766   345554553 4888888765

...

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.30  E-value=1.6e-06  Score=76.20  Aligned_cols=95  Identities=15%  Similarity=0.059  Sum_probs=71.0

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHH-HHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTE-LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~-l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      -++|+|+|+|+|.||-.|+..-+. +.+-+...+-.+++.+-+.+..       ++.+..+.+ ++              
T Consensus       472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-------~~p~~~~lL-k~--------------  529 (569)
T COG4232         472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-------NDPAITALL-KR--------------  529 (569)
T ss_pred             CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-------CCHHHHHHH-HH--------------
Confidence            356799999999999999965543 3456666665668888777653       445555555 32              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                             |             ++-+.|++++++++|.-.-...|..+.+.+++.|++.
T Consensus       530 -------~-------------~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         530 -------L-------------GVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             -------c-------------CCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence                   1             6667899999999998877788888999999998764

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.30  E-value=1.2e-06  Score=61.02  Aligned_cols=49  Identities=27%  Similarity=0.371  Sum_probs=41.5

Q ss_pred             ecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        82 ~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ...+..+++++++.||++||++|+..+|.+.++.+++.. .+.++.++..
T Consensus        25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            344444589999999999999999999999999999986 4888888864

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.17  E-value=8.9e-06  Score=50.03  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=32.5

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      ++.||++||+.|....+.++++  ++...++.++.++.+.
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~   38 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE   38 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence            4779999999999999999998  4555679999999874

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=98.17  E-value=2.9e-05  Score=60.87  Aligned_cols=117  Identities=14%  Similarity=0.272  Sum_probs=77.1

Q ss_pred             ceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC---eEEEEEecCCCCCCCCCCHHH
Q 027311           67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG---LEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~---~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      +..|.|++-+    .....+.+|+++||.+-..+|..|...+..|..|..++.+.|   +.++.|+--.       ...+
T Consensus         8 ~~~p~W~i~~----~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~-------~~s~   76 (238)
T PF04592_consen    8 KPPPPWKIGG----QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG-------EHSR   76 (238)
T ss_pred             CCCCCceECC----chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC-------cchh
Confidence            4567777644    345677789999999998899999999999999999998776   6677776321       2223


Q ss_pred             HH-HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          144 IQ-EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       144 ~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                      .. ..++.+....+|++.. +..   ...+|..+...+.           -++|+|+-|++.+...-
T Consensus        77 ~~~~~l~~r~~~~ipVyqq-~~~---q~dvW~~L~G~kd-----------D~~iyDRCGrL~~~i~~  128 (238)
T PF04592_consen   77 LKYWELKRRVSEHIPVYQQ-DEN---QPDVWELLNGSKD-----------DFLIYDRCGRLTYHIPL  128 (238)
T ss_pred             HHHHHHHHhCCCCCceecC-Ccc---ccCHHHHhCCCcC-----------cEEEEeccCcEEEEecC
Confidence            32 2333444556888631 111   2234544433221           33899999999877543

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=98.08  E-value=4.9e-05  Score=61.30  Aligned_cols=133  Identities=15%  Similarity=0.205  Sum_probs=77.8

Q ss_pred             CCCceecCeEEeCCCCCeecCCc-cCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHh-cC--CeEEEEEecCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSI-YKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYK-NQ--GLEILAFPCNQFGAQEP  138 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~-~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~-~~--~~~iv~Is~d~~~~~~~  138 (225)
                      ....-.|+|..++++|+.+++.+ ++||+.||..+.+ |-..|....-.  ...++|. ..  .++++-|++-+      
T Consensus        96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e------  167 (252)
T PF05176_consen   96 DKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIE------  167 (252)
T ss_pred             HhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecch------
Confidence            34567899999999999999888 6999888766544 53344433322  2333332 22  59999999742      


Q ss_pred             CCHHHHHHHHHhhc------------CCCcceeeeecCC--CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE
Q 027311          139 GDNEQIQEFACTRF------------KAEFPIFDKVDVN--GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV  204 (225)
Q Consensus       139 ~~~~~~~~~~~~~~------------~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~  204 (225)
                         .-++.++..-.            ...|-+   .+..  ....++..+.           .-.-+..+||||++|+|+
T Consensus       168 ---~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~---~~~~~~~~~iRe~Lgi-----------~N~~~GYvyLVD~~grIR  230 (252)
T PF05176_consen  168 ---NWLKSWLVKLFMGSLRKSIPEERHDRYFI---VYRGQLSDDIREALGI-----------NNSYVGYVYLVDPNGRIR  230 (252)
T ss_pred             ---HHHHHHHHHHHhhhhhccCCHHHCceEEE---EeCCcccHHHHHHhCC-----------CCCCcCeEEEECCCCeEE
Confidence               23333331110            111111   1111  1111211111           111235789999999999


Q ss_pred             EEcCCCCChhhHHHHHH
Q 027311          205 ERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       205 ~~~~g~~~~~~l~~~l~  221 (225)
                      +...|..++++++...+
T Consensus       231 WagsG~At~~E~~~L~k  247 (252)
T PF05176_consen  231 WAGSGPATPEELESLWK  247 (252)
T ss_pred             eCccCCCCHHHHHHHHH
Confidence            99999999988776554

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.08  E-value=4.2e-05  Score=54.20  Aligned_cols=43  Identities=12%  Similarity=0.040  Sum_probs=31.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQ  132 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~  132 (225)
                      +.+.+||.|+|+| |.|.. .|+.+++..++...  .+.+.-|..|+
T Consensus        17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d   61 (116)
T cd03007          17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKD   61 (116)
T ss_pred             cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccc
Confidence            5678999999966 66665 58888888888543  36666676653

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.02  E-value=5.7e-05  Score=48.45  Aligned_cols=33  Identities=12%  Similarity=0.207  Sum_probs=24.9

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      +..|+++||++|+...+.|++       .++.+..++++.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~   34 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEK   34 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence            456889999999987766654       357787787763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4.1e-05  Score=65.83  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=36.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+++.+|.||++||++|.+..|.+.++...+++. +.+..|..+
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~   88 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD   88 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch
Confidence            3679999999999999999999999999999873 666666543

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00014  Score=53.28  Aligned_cols=136  Identities=17%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             ccCCCceecC--eE-EeCC----CCCeecCCcc-CCCEEEEE-EcccCCCC-ChHhHHHHHHHHHHHhcCCe-EEEEEec
Q 027311           62 ASQSKTSVHD--FS-VKDA----KGQDVDLSIY-KGKLLLIV-NVASQCGL-TNSNYTELSQLYDKYKNQGL-EILAFPC  130 (225)
Q Consensus        62 ~~~~g~~~p~--f~-l~~~----~G~~~~l~~~-~gk~vlv~-F~~twC~~-C~~~~~~l~~l~~~~~~~~~-~iv~Is~  130 (225)
                      ...+|+.+|+  .+ +.+.    .|.+++++++ +||.++|+ ..+...|. |...+|.+.+-.++++.+|+ +|+.||+
T Consensus         8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV   87 (171)
T KOG0541|consen    8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV   87 (171)
T ss_pred             cccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence            3478999998  33 2221    2337888884 89766663 55778887 67899999999999999997 5788888


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                      |        ++-.++.|. +.++.+-.+-...|..+...+ .++...... +..+ ++++--...++ .||++.+.....
T Consensus        88 n--------DpFv~~aW~-k~~g~~~~V~f~aD~~g~ftk-~lgleld~~-d~~~-g~RS~R~a~vv-engkV~~~nvE~  154 (171)
T KOG0541|consen   88 N--------DPFVMKAWA-KSLGANDHVKFVADPAGEFTK-SLGLELDLS-DKLL-GVRSRRYALVV-ENGKVTVVNVEE  154 (171)
T ss_pred             C--------cHHHHHHHH-hhcCccceEEEEecCCCceee-eccceeeec-cccC-ccccccEEEEE-eCCeEEEEEecc
Confidence            8        778888887 666664333222455554332 222211111 1111 33333344455 789988876543

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.95  E-value=9.6e-05  Score=52.56  Aligned_cols=92  Identities=11%  Similarity=0.058  Sum_probs=64.4

Q ss_pred             ccCCCEEEEEEccc----CCCCChHhH--HHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 027311           86 IYKGKLLLIVNVAS----QCGLTNSNY--TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF  159 (225)
Q Consensus        86 ~~~gk~vlv~F~~t----wC~~C~~~~--~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (225)
                      .-++|.++|+++++    ||..|+..+  +.+.++.+    .++.+++.++..        .+. .+.+ .         
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~--------~eg-~~la-~---------   70 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAK--------PEG-YRVS-Q---------   70 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCC--------hHH-HHHH-H---------
Confidence            34689999999988    777887555  34444443    347777776652        221 1111 1         


Q ss_pred             eeecCCCCCchhhhhhccccCCCCCCCccccceeEEEE---CCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          160 DKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLV---DKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~li---d~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                  .+             ++.++|+..++   +.+++++.+..|..+++++...|+.+.+
T Consensus        71 ------------~l-------------~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~  114 (116)
T cd02991          71 ------------AL-------------RERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD  114 (116)
T ss_pred             ------------Hh-------------CCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence                        11             66778999999   7778889999999999999999988753

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=4.8e-05  Score=66.33  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=37.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEec
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPC  130 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~  130 (225)
                      .+|-|||.|+|+||++|++..|.+++|.+.|++. ++.|.-+..
T Consensus       383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa  426 (493)
T KOG0190|consen  383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA  426 (493)
T ss_pred             cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc
Confidence            5889999999999999999999999999999976 566666643

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.87  E-value=0.0002  Score=51.88  Aligned_cols=87  Identities=10%  Similarity=0.084  Sum_probs=64.9

Q ss_pred             EEEEEEcc--cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           91 LLLIVNVA--SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        91 ~vlv~F~~--twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      ..+|.|-+  .-+|-+....--|.++.++|.+..+.+..|++|.        ..++.    .+                 
T Consensus        36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~~~LA----~~-----------------   86 (132)
T PRK11509         36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------SEAIG----DR-----------------   86 (132)
T ss_pred             cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------CHHHH----HH-----------------
Confidence            45554542  2455666677788899999974448899898873        22222    11                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          |             +|.++|+.+++ ++|+++.+..|..+.+++.+.|++++
T Consensus        87 ----f-------------gV~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L  124 (132)
T PRK11509         87 ----F-------------GVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_pred             ----c-------------CCccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence                2             88889998888 99999999999999999999999886

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.00041  Score=51.02  Aligned_cols=103  Identities=16%  Similarity=0.235  Sum_probs=67.3

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      -.||+.++-|-...|+.|-..-..+   .++++-+... +.++.+....       + +.+.          |..   .+
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~-------s-kpv~----------f~~---g~   97 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY-------S-KPVL----------FKV---GD   97 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc-------C-cceE----------eec---Cc
Confidence            4689999999999999998655544   3566666543 7777776532       0 0000          000   00


Q ss_pred             C-CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          164 V-NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       164 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      . ..-...++++.+          +++++|+.++.|++|+-+....|.++++++...++
T Consensus        98 kee~~s~~ELa~kf----------~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143          98 KEEKMSTEELAQKF----------AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             eeeeecHHHHHHHh----------ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            0 001111222222          89999999999999999999999999998766554

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=97.73  E-value=0.00012  Score=59.56  Aligned_cols=91  Identities=12%  Similarity=0.135  Sum_probs=60.1

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      ...|+|+|+|+||+.++...|.+.+..+.++++.  -++|--.+|-      +.    ...++.+               
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc------d~----e~~ia~k---------------   67 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC------DK----EDDIADK---------------   67 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc------ch----hhHHhhh---------------
Confidence            5689999999999999999999998777665441  2233333331      01    1112122               


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEE-EcCCCCChhhHHHHHHhhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE-RYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~-~~~g~~~~~~l~~~l~~ll  224 (225)
                            |             .|.-+||.=|+ .+|.+.. .|.|.-+.+.+.+.|++.+
T Consensus        68 ------y-------------~I~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~  106 (375)
T KOG0912|consen   68 ------Y-------------HINKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQL  106 (375)
T ss_pred             ------h-------------ccccCceeeee-eccchhhhhhccchhHHHHHHHHHHHh
Confidence                  2             55556776666 7888877 4778777788888887755

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=97.58  E-value=0.0018  Score=50.29  Aligned_cols=87  Identities=15%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             CceecCeEEeCCCCCeecCCc-cCCC--EEEEEEc-----ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           66 KTSVHDFSVKDAKGQDVDLSI-YKGK--LLLIVNV-----ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        66 g~~~p~f~l~~~~G~~~~l~~-~~gk--~vlv~F~-----~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      +..-.+..+...+|+ ++|.| |.|+  -+|..|.     ...|+.|...+-.+.....-+..+++.++.||-.      
T Consensus        43 v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra------  115 (211)
T PF05988_consen   43 VEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA------  115 (211)
T ss_pred             ccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC------
Confidence            334445777777887 99999 5776  3444454     4589999999999987777888888999999965      


Q ss_pred             CCCHHHHHHHHHhhcCCCcceeeee
Q 027311          138 PGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                        ..+++..|. ++.|-.+|+++..
T Consensus       116 --P~~~i~afk-~rmGW~~pw~Ss~  137 (211)
T PF05988_consen  116 --PLEKIEAFK-RRMGWTFPWYSSY  137 (211)
T ss_pred             --CHHHHHHHH-HhcCCCceEEEcC
Confidence              789999998 7778889998643

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.52  E-value=0.00042  Score=45.29  Aligned_cols=30  Identities=13%  Similarity=0.189  Sum_probs=22.6

Q ss_pred             cccCCCCChHhHHHHHHHHHHHhcCCeEEEE
Q 027311           97 VASQCGLTNSNYTELSQLYDKYKNQGLEILA  127 (225)
Q Consensus        97 ~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~  127 (225)
                      ++++|+.|......++++..+++ ..++++-
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~   35 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEELG-IEVEIID   35 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEE
Confidence            57789999988889988888874 2244443

...

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.42  E-value=0.00053  Score=55.49  Aligned_cols=126  Identities=10%  Similarity=0.149  Sum_probs=63.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhh--------cCCCccee
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR--------FKAEFPIF  159 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  159 (225)
                      .+|.+|+.|.-..||+|++...++.++.+. +  ++++.-+.+--   -.+++......-+..+        +...+..-
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~---l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~  189 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGI---IKPDSPGKAAAILAAKDPAKALQEYEASGGKL  189 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccc---cCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence            577889999999999999999998887654 2  24444333211   1222333222221111        00111000


Q ss_pred             eeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          160 DKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                       ...............+.....-....|++++|++|+.|.+|.+. ...|..++++|++.|.
T Consensus       190 -~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~-~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        190 -GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ-QVVGLPDPAQLAEIMG  249 (251)
T ss_pred             -CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE-EecCCCCHHHHHHHhC
Confidence             00000000000000000000000001899999999999999763 4567777888887764

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.37  E-value=0.00044  Score=45.71  Aligned_cols=46  Identities=20%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      |+.|+++|||+|....+.|.++.  ... .+.++-|+.+.       +.+++.+++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~-------~~~~~~~~l   46 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLS-------NGSEIQDYL   46 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCC-------ChHHHHHHH
Confidence            46688999999999998888876  222 26777776542       445555554

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.34  E-value=0.0024  Score=47.87  Aligned_cols=87  Identities=7%  Similarity=0.010  Sum_probs=43.1

Q ss_pred             cCCccCCCEEEEEEcccCCCCChHhHH-HHH--HHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 027311           83 DLSIYKGKLLLIVNVASQCGLTNSNYT-ELS--QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIF  159 (225)
Q Consensus        83 ~l~~~~gk~vlv~F~~twC~~C~~~~~-~l~--~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (225)
                      ..+.-.+|+++|++.++||..|..+.. .++  ++.+.+.+. +.-|-|..+        ...++......-        
T Consensus        31 ~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-FI~VkvDre--------e~Pdid~~y~~~--------   93 (163)
T PF03190_consen   31 EKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-FIPVKVDRE--------ERPDIDKIYMNA--------   93 (163)
T ss_dssp             HHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH--EEEEEETT--------T-HHHHHHHHHH--------
T ss_pred             HHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-EEEEEeccc--------cCccHHHHHHHH--------
Confidence            334446899999999999999996654 222  344444332 444444433        333343332110        


Q ss_pred             eeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311          160 DKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~  208 (225)
                               .+.+.             +..+.|++++++|+|+..+...
T Consensus        94 ---------~~~~~-------------~~gGwPl~vfltPdg~p~~~~t  120 (163)
T PF03190_consen   94 ---------VQAMS-------------GSGGWPLTVFLTPDGKPFFGGT  120 (163)
T ss_dssp             ---------HHHHH-------------S---SSEEEEE-TTS-EEEEES
T ss_pred             ---------HHHhc-------------CCCCCCceEEECCCCCeeeeee
Confidence                     01111             4456899999999999987633

; PDB: 3IRA_A.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.30  E-value=0.0045  Score=49.52  Aligned_cols=38  Identities=13%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP  129 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is  129 (225)
                      .||.+|+.|.-..||+|++..+++.++.+    .+++|..+.
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~  143 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLA  143 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEe
Confidence            57899999999999999998888877643    456665543

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.22  E-value=0.00028  Score=62.01  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=35.1

Q ss_pred             CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecC
Q 027311           90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCN  131 (225)
Q Consensus        90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d  131 (225)
                      |.-+|.|+++||+.|+...|.++++.+...+-.  +.|.+|..-
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA  101 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA  101 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc
Confidence            478899999999999999999999999887553  667777654

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.17  E-value=0.0013  Score=46.85  Aligned_cols=43  Identities=14%  Similarity=0.202  Sum_probs=32.1

Q ss_pred             CCCEEEEEEccc-------CCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVAS-------QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~t-------wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .|++++|.|.++       |||.|....|.+++......+ +..+|-+.+-
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG   67 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG   67 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence            567888888854       999999999999998888544 5888878764

; PDB: 1V9W_A 1WOU_A.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=97.12  E-value=0.0084  Score=42.71  Aligned_cols=107  Identities=15%  Similarity=0.250  Sum_probs=63.2

Q ss_pred             CCccCCC--EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311           84 LSIYKGK--LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK  161 (225)
Q Consensus        84 l~~~~gk--~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
                      |+++++|  ++||+-....-+.-...+..|++-...+.++.+.++.|.-+......    .                   
T Consensus         3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~----~-------------------   59 (118)
T PF13778_consen    3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG----K-------------------   59 (118)
T ss_pred             hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc----C-------------------
Confidence            5566655  44442223344456677788888777888888888888533211000    0                   


Q ss_pred             ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                       .........+...+...         ....+.+||++||.+..++....+.+++-..|+++
T Consensus        60 -~~~~~~~~~lr~~l~~~---------~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M  111 (118)
T PF13778_consen   60 -PLSPEDIQALRKRLRIP---------PGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM  111 (118)
T ss_pred             -cCCHHHHHHHHHHhCCC---------CCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence             00011111222222111         11247799999999999999999999999988864

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=97.10  E-value=0.0067  Score=42.82  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhcccc-----------
Q 027311          111 LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS-----------  179 (225)
Q Consensus       111 l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----------  179 (225)
                      |.+...++.+.|++++.|...        +.+.+++|+ +..+.+++++.  |++.    .+|+.+.-.           
T Consensus         2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~--D~~~----~lY~~lg~~~~~~~~~~~~~   66 (115)
T PF13911_consen    2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYV--DPER----KLYKALGLKRGLKWSLLPPA   66 (115)
T ss_pred             hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEE--eCcH----HHHHHhCCccccccCCCchH
Confidence            566778888889999999976        666699998 67788999774  4331    222221111           


Q ss_pred             -----------------CCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          180 -----------------KGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       180 -----------------~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                                       .++.........+.+||+|++|+|++.+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~  113 (115)
T PF13911_consen   67 LWSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD  113 (115)
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence                             111202255667899999999999998754

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.0026  Score=54.75  Aligned_cols=42  Identities=19%  Similarity=0.183  Sum_probs=35.2

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEec
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPC  130 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~  130 (225)
                      ....+|.|+++||++|+..+|.+.++...++. .++.+..+..
T Consensus       162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~  204 (383)
T KOG0191|consen  162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA  204 (383)
T ss_pred             CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence            35788889999999999999999999999874 5577777754

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=96.91  E-value=0.0016  Score=53.03  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=29.5

Q ss_pred             CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeE
Q 027311           90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLE  124 (225)
Q Consensus        90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~  124 (225)
                      ...+|+|+|+||.+|++.-|...+.--++++-|.-
T Consensus        44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~P   78 (468)
T KOG4277|consen   44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLP   78 (468)
T ss_pred             CeEEEEeechhhhhcccccchhHHhCcchhhcCCc
Confidence            37889999999999999999999888777765543

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.87  E-value=0.014  Score=45.37  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHH
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQ  113 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~  113 (225)
                      .+++.++.|....||+|++..+.+.+
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh
Confidence            47899999999999999999988877

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=96.86  E-value=0.0038  Score=40.34  Aligned_cols=32  Identities=19%  Similarity=0.229  Sum_probs=22.7

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +..||++|||+|+...+.|.++       ++.+-.+++|
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~   33 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE   33 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence            5679999999999877776554       3444456665

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.77  E-value=0.0056  Score=46.39  Aligned_cols=42  Identities=17%  Similarity=0.145  Sum_probs=35.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      .+++.|+.|+.-.||+|...-+.+.++.++++++ +.+.-+.+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~-v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD-VKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC-ceEEEcCC
Confidence            5789999999999999999999999999998543 66655544

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=96.23  E-value=0.016  Score=38.49  Aligned_cols=37  Identities=5%  Similarity=0.064  Sum_probs=30.1

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |..|..+|||.|......|+++..++  .++.+.-|+++
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~   39 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH   39 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence            55688999999999999999999775  35777777766

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.01  Score=41.73  Aligned_cols=43  Identities=9%  Similarity=0.181  Sum_probs=34.7

Q ss_pred             CCCEEEEEEcc--------cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVA--------SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~--------twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +|+-+++.|.+        ||||.|.+..|.+.+..+....+ +.+|-+-+-
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~-~~~v~v~VG   74 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED-VHFVHVYVG   74 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc-eEEEEEEec
Confidence            67778888874        59999999999999988866554 888887664

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=96.06  E-value=0.014  Score=42.84  Aligned_cols=146  Identities=18%  Similarity=0.232  Sum_probs=79.1

Q ss_pred             cccccCCCceecCeEEeC-----CCCCeec-----CCccCCCEEEEEEcccCCCCChHhHHHHHHHHH-HHhcCCeEEEE
Q 027311           59 HTMASQSKTSVHDFSVKD-----AKGQDVD-----LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYD-KYKNQGLEILA  127 (225)
Q Consensus        59 ~~~~~~~g~~~p~f~l~~-----~~G~~~~-----l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~-~~~~~~~~iv~  127 (225)
                      .....+.|+++|...+.+     ++|+.++     .+++-||+-||.-.|.....--...+-++.+.. +|.....+--.
T Consensus        19 ~AHnlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTT   98 (184)
T COG3054          19 SAHNLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTT   98 (184)
T ss_pred             HHhhcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeE
Confidence            334456778888776654     3555544     455679999998777554433333344443332 22222222222


Q ss_pred             -EecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee-ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEE
Q 027311          128 -FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK-VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE  205 (225)
Q Consensus       128 -Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~  205 (225)
                       |+.|+.   -+.+..-++.-+ ++..-.||+-.. .|..| ..+..|+. .+..           -.+++.|++|++.+
T Consensus        99 IiN~DDA---i~GtgmFVkssa-e~~Kke~pwSq~vlD~~g-vak~AWqL-~e~~-----------SaivVlDk~G~Vkf  161 (184)
T COG3054          99 IINTDDA---IPGTGMFVKSSA-ESNKKEYPWSQFVLDSNG-VAKNAWQL-KEES-----------SAVVVLDKDGRVKF  161 (184)
T ss_pred             EeccCCc---cccccceeecch-hhccccCCceeeEEccch-hhhhhhcc-cccc-----------ceEEEEcCCCcEEE
Confidence             566641   112333333333 444556675443 34444 33334422 1111           25689999999999


Q ss_pred             EcCCCCChhhHHHHHH
Q 027311          206 RYAPTTSPLSIEVVLE  221 (225)
Q Consensus       206 ~~~g~~~~~~l~~~l~  221 (225)
                      ...|..+..++.+.|.
T Consensus       162 vkeGaLt~aevQ~Vi~  177 (184)
T COG3054         162 VKEGALTQAEVQQVID  177 (184)
T ss_pred             EecCCccHHHHHHHHH
Confidence            9999988877666554

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=96.02  E-value=0.011  Score=43.35  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP  129 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is  129 (225)
                      .++++|+.|+..+||+|....+.+.++..++++-.+.+..++
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p   45 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFP   45 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence            378999999999999999999999998888764234444343

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.81  E-value=0.055  Score=42.26  Aligned_cols=83  Identities=14%  Similarity=0.260  Sum_probs=60.4

Q ss_pred             CeEEeCCCCCeecCCcc-CCC--EEEEEEc-c----cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           71 DFSVKDAKGQDVDLSIY-KGK--LLLIVNV-A----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        71 ~f~l~~~~G~~~~l~~~-~gk--~vlv~F~-~----twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      +..+.+.+| ..+|+++ .||  .+|..|. +    -.||.|...+-.+.-...-+...++.++.||--        ..+
T Consensus        54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl~  124 (247)
T COG4312          54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PLE  124 (247)
T ss_pred             eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cHH
Confidence            344555666 5788884 676  3333343 3    369999998888887777777778999999854        678


Q ss_pred             HHHHHHHhhcCCCcceeeeec
Q 027311          143 QIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      ++..+- ++.|-.||+++..+
T Consensus       125 ~l~~~k-~rmGW~f~w~Ss~~  144 (247)
T COG4312         125 ELVAYK-RRMGWQFPWVSSTD  144 (247)
T ss_pred             HHHHHH-HhcCCcceeEeccC
Confidence            888887 77788899986544

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=95.64  E-value=0.091  Score=42.87  Aligned_cols=42  Identities=12%  Similarity=0.110  Sum_probs=34.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++.+|||.||-+.++.|...-..|..++.+|..  ++++.|...
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~  186 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS  186 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence            355899999999999999999999999999986  899998753

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>KOG4498 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.21  Score=38.19  Aligned_cols=55  Identities=20%  Similarity=0.334  Sum_probs=45.7

Q ss_pred             eCCCCCeecCCcc-C-CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311           75 KDAKGQDVDLSIY-K-GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP  129 (225)
Q Consensus        75 ~~~~G~~~~l~~~-~-gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is  129 (225)
                      .+..|+.+...++ + ++.+|....-..|-.|+++...|.++..-+...|+..++|-
T Consensus        35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg   91 (197)
T KOG4498|consen   35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG   91 (197)
T ss_pred             hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence            5778999999996 3 44555555688999999999999999888888899999886

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.56  E-value=0.095  Score=47.42  Aligned_cols=39  Identities=10%  Similarity=0.106  Sum_probs=28.3

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP  129 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is  129 (225)
                      ++..+-.|..++||.|+.....++++..+.+  ++..-.|.
T Consensus       476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~  514 (555)
T TIGR03143       476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMID  514 (555)
T ss_pred             CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence            4444556679999999988888888888865  35544443

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.46  E-value=0.07  Score=33.58  Aligned_cols=32  Identities=13%  Similarity=0.274  Sum_probs=22.0

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++.|.++||+.|......|.+       .++.+..+.+|
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~   33 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD   33 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence            455788999999976555544       34666666665

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.29  E-value=0.05  Score=35.49  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=23.9

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|..+|||.|......|+++..     .+.++-|..+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~   35 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH   35 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence            455778999999977777776544     2566666654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.027  Score=44.09  Aligned_cols=42  Identities=19%  Similarity=0.240  Sum_probs=34.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +++.+++.||+.||.+|......+..+.+..  .+++++.+..+
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~   57 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE   57 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence            7889999999999999997777777777666  45888888765

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=94.71  E-value=0.081  Score=39.23  Aligned_cols=47  Identities=17%  Similarity=0.197  Sum_probs=36.9

Q ss_pred             CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHH--hcCCeEEEEEecC
Q 027311           84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY--KNQGLEILAFPCN  131 (225)
Q Consensus        84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~--~~~~~~iv~Is~d  131 (225)
                      +-+-.++++|+.|+.-.||+|....+.+.++.+++  .+ .+.++..++.
T Consensus         7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~   55 (162)
T PF13462_consen    7 IGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVP   55 (162)
T ss_dssp             ES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESS
T ss_pred             ecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcc
Confidence            44445789999999999999999999999999998  33 3887777653

...

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=94.67  E-value=0.062  Score=35.74  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=28.9

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |..|+...||.|....+.+.++.....+ ++++.-..+.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~   38 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP   38 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence            3568889999999999999998855544 4776666554

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=94.65  E-value=0.12  Score=31.63  Aligned_cols=32  Identities=13%  Similarity=0.249  Sum_probs=22.5

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|..+|||.|......|       .+.|+.+-.+.++
T Consensus         1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~   32 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD   32 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred             cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence            4568889999999766655       3344666667766

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=94.56  E-value=0.2  Score=34.78  Aligned_cols=75  Identities=17%  Similarity=0.348  Sum_probs=48.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ..++++|+=-+|.||.....+.++++..++..++ +.+..+.+-        ....+...+++++++             
T Consensus        18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V-------------   75 (105)
T PF11009_consen   18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGV-------------   75 (105)
T ss_dssp             --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--------------
T ss_pred             ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCC-------------
Confidence            3678888777999999999999999999988765 666666553        345555555444322             


Q ss_pred             CchhhhhhccccCCCCCCCcccc-ceeEEEECCCCcEEEE
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKW-NFSKFLVDKEGNVVER  206 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~-~P~~~lid~~G~I~~~  206 (225)
                                           .+ .|..+|| ++|++++-
T Consensus        76 ---------------------~HeSPQ~ili-~~g~~v~~   93 (105)
T PF11009_consen   76 ---------------------KHESPQVILI-KNGKVVWH   93 (105)
T ss_dssp             ------------------------SSEEEEE-ETTEEEEE
T ss_pred             ---------------------CcCCCcEEEE-ECCEEEEE
Confidence                                 22 3888888 88999875

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=94.48  E-value=0.21  Score=31.93  Aligned_cols=33  Identities=9%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      +..|..+|||.|......|++       .++.+-.+.++.
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~   34 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDG   34 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence            345778999999976666654       346666666663

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=94.30  E-value=0.14  Score=34.11  Aligned_cols=37  Identities=8%  Similarity=0.024  Sum_probs=25.7

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|..+|||.|......|+++..++.  ++.+.-++++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~   38 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH   38 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence            345778899999988888887765542  3555555554

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=94.28  E-value=0.39  Score=34.76  Aligned_cols=91  Identities=12%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             CEEEEEEccc--CCC-CCh-HhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           90 KLLLIVNVAS--QCG-LTN-SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        90 k~vlv~F~~t--wC~-~C~-~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +..+|.|..+  .|. -+. .....++++.++|+++.+.++.+..+.        ...+.    +.+++           
T Consensus        21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~~~----~~fgl-----------   77 (130)
T cd02983          21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLDLE----EALNI-----------   77 (130)
T ss_pred             CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHHHH----HHcCC-----------
Confidence            4666666532  344 344 335778888889988777887777652        11222    21111           


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEE-cCCCCChhhHHHHHHhhhC
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER-YAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~-~~g~~~~~~l~~~l~~ll~  225 (225)
                                           .-...|+.++++.++. ++. +.|..+.+.+.+.++..++
T Consensus        78 ---------------------~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~  116 (130)
T cd02983          78 ---------------------GGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY  116 (130)
T ss_pred             ---------------------CccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence                                 0013588899998876 666 6788888999998888763

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.98  E-value=0.21  Score=31.11  Aligned_cols=32  Identities=19%  Similarity=0.167  Sum_probs=22.3

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|..+|||.|......|++..       +.+.-++++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~   33 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDIL   33 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECC
Confidence            44578899999997777766543       555556655

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=93.92  E-value=0.19  Score=32.58  Aligned_cols=20  Identities=15%  Similarity=0.184  Sum_probs=15.5

Q ss_pred             EEEcccCCCCChHhHHHHHH
Q 027311           94 IVNVASQCGLTNSNYTELSQ  113 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~  113 (225)
                      ..|+.+|||.|......|++
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~   21 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSS   21 (79)
T ss_pred             EEEecCCChhHHHHHHHHHH
Confidence            45778999999977766654

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.72  E-value=0.083  Score=41.33  Aligned_cols=44  Identities=20%  Similarity=0.050  Sum_probs=37.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +.+.-+|.|++.|.|-|+...|-+.++-.+|...++.+=.|.+.
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG  186 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG  186 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence            44588999999999999999999999999998877776666544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.59  E-value=0.51  Score=41.21  Aligned_cols=66  Identities=6%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             CceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           66 KTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        66 g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      +..+-...+.-.+|+.+++.+++|..-+|-.-++- ..|...+...+...+++.++||-||-|..+.
T Consensus       273 ee~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~  338 (453)
T PLN03098        273 DETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE  338 (453)
T ss_pred             hhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence            34455555555578899999999986555444443 5788888999999999999999999998774

>PHA03050 glutaredoxin; Provisional

Probab=93.51  E-value=0.12  Score=36.08  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=16.9

Q ss_pred             EEEEcccCCCCChHhHHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQLY  115 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~  115 (225)
                      |+.|..+|||+|......|++..
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~   37 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFS   37 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcC
Confidence            44588999999997666665543

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=93.26  E-value=0.52  Score=30.02  Aligned_cols=31  Identities=13%  Similarity=0.157  Sum_probs=21.5

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +.|..+|||.|......|++       .|+.+-.+.++
T Consensus         4 ~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~   34 (73)
T cd03027           4 TIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID   34 (73)
T ss_pred             EEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence            34667999999977766664       34556666665

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.23  E-value=0.72  Score=41.37  Aligned_cols=65  Identities=9%  Similarity=0.080  Sum_probs=42.1

Q ss_pred             ccCCCceecCe--EEeCCCCCeecCCc--------cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEE
Q 027311           62 ASQSKTSVHDF--SVKDAKGQDVDLSI--------YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF  128 (225)
Q Consensus        62 ~~~~g~~~p~f--~l~~~~G~~~~l~~--------~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~I  128 (225)
                      +...|...-.|  .+.+..|....|++        ..++.-+-.|....||+|+.....++++..+.+  ++..-.|
T Consensus        79 g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i  153 (517)
T PRK15317         79 GIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMI  153 (517)
T ss_pred             ecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence            34455555554  33445555555554        234455777889999999998899988888755  3665555

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=92.83  E-value=0.38  Score=31.34  Aligned_cols=35  Identities=14%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +.-|+.|..+|||.|.+....|++       .|+.+..++++
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~   41 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG   41 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence            344556889999999977776653       34655566665

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=92.52  E-value=0.19  Score=39.32  Aligned_cols=43  Identities=7%  Similarity=0.063  Sum_probs=33.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .|++.|+.|+.-.||+|...-+.+   .++.+.++++ +.++-+.+.
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~-v~~~~~~~~   81 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG-TKMTKYHVE   81 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC-CeEEEeccc
Confidence            478889999999999999877765   7788887654 676666553

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=92.37  E-value=0.11  Score=41.03  Aligned_cols=40  Identities=15%  Similarity=0.186  Sum_probs=28.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEE
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF  128 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~I  128 (225)
                      .|-+ ++.|.++|||.|..-.+++.++..--.+.++.+--|
T Consensus        39 ~gew-mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~V   78 (248)
T KOG0913|consen   39 TGEW-MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKV   78 (248)
T ss_pred             chHH-HHHhcCCCCccccchHHHHhccCCccCCCceeEEEE
Confidence            4544 456999999999998888888776555555444433

>PRK10329 glutaredoxin-like protein; Provisional

Probab=92.27  E-value=0.59  Score=30.75  Aligned_cols=32  Identities=6%  Similarity=0.295  Sum_probs=22.7

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +.-|..+|||.|......|.       ++|+.+-.+.++
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~   34 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVD   34 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECC
Confidence            34577899999997666553       356777777776

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=92.24  E-value=0.92  Score=41.11  Aligned_cols=37  Identities=19%  Similarity=0.203  Sum_probs=24.7

Q ss_pred             ccccceeEEEECCCCc---EEEEcCCCCChhhHHHHHHhhhC
Q 027311          187 SIKWNFSKFLVDKEGN---VVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       187 ~v~~~P~~~lid~~G~---I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      ++...|++.|.|.+|+   |+  |.|.....++...|..|++
T Consensus       416 ~v~~~P~~~i~~~~~~~~~i~--f~g~P~G~Ef~s~i~~i~~  455 (555)
T TIGR03143       416 KITKLPTVALLDDDGNYTGLK--FHGVPSGHELNSFILALYN  455 (555)
T ss_pred             CCCcCCEEEEEeCCCcccceE--EEecCccHhHHHHHHHHHH
Confidence            5666788888876653   54  4455556677777777653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=91.15  E-value=1.7  Score=39.04  Aligned_cols=65  Identities=12%  Similarity=0.121  Sum_probs=41.2

Q ss_pred             ccCCCceecCe--EEeCCCCCeecCCc--------cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEE
Q 027311           62 ASQSKTSVHDF--SVKDAKGQDVDLSI--------YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF  128 (225)
Q Consensus        62 ~~~~g~~~p~f--~l~~~~G~~~~l~~--------~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~I  128 (225)
                      +...|.....|  .+.+..|....|++        ..++.-+-.|....||+|+.....++++..+.+  ++..-.|
T Consensus        80 g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i  154 (515)
T TIGR03140        80 GIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMI  154 (515)
T ss_pred             ecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEE
Confidence            34445554444  33445555555544        234556777889999999988888888888765  3554444

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=90.89  E-value=0.72  Score=29.33  Aligned_cols=31  Identities=13%  Similarity=0.233  Sum_probs=22.0

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ..|..++||.|......|++       .|+.+-.+.++
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~   32 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID   32 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence            34668899999977777753       45666666665

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=90.69  E-value=0.72  Score=31.58  Aligned_cols=21  Identities=14%  Similarity=0.197  Sum_probs=14.7

Q ss_pred             EEEEcccCCCCChHhHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQ  113 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~  113 (225)
                      |+.|..+|||.|.+.-..|++
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~   30 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLT   30 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHH
Confidence            334788999999966554443

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=90.44  E-value=1.9  Score=32.43  Aligned_cols=42  Identities=19%  Similarity=0.239  Sum_probs=26.1

Q ss_pred             CCE-EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           89 GKL-LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        89 gk~-vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +++ +++.|..............++++.++++++ +.++.+..+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~  136 (184)
T PF13848_consen   94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD  136 (184)
T ss_dssp             SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT
T ss_pred             CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH
Confidence            445 555554444445566667777788777765 677766544

...

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=90.32  E-value=1.9  Score=37.21  Aligned_cols=38  Identities=13%  Similarity=0.054  Sum_probs=34.3

Q ss_pred             ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      -+..+|..|+|+..|+-+.+..|....++|...|++.+
T Consensus        74 p~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~  111 (506)
T KOG2507|consen   74 PYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW  111 (506)
T ss_pred             ccccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence            67778999999999999999999999999999988753

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=90.06  E-value=2  Score=29.26  Aligned_cols=36  Identities=14%  Similarity=0.196  Sum_probs=21.5

Q ss_pred             CCEEEEEEc----ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           89 GKLLLIVNV----ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        89 gk~vlv~F~----~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+.|+|+-.    .+|||+|...-..|++.       |+.+..+.++
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~   50 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVL   50 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECC
Confidence            445666443    27999999666665553       3444455554

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=89.99  E-value=1.1  Score=28.31  Aligned_cols=32  Identities=13%  Similarity=0.283  Sum_probs=21.5

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++-|..+|||.|.+....|++       .|+.+..++++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~   34 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG   34 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence            344678999999987666653       34555556655

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK10638 glutaredoxin 3; Provisional

Probab=88.77  E-value=2.1  Score=27.96  Aligned_cols=31  Identities=13%  Similarity=0.343  Sum_probs=20.4

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ..|..+|||.|......|++       .|+.+-.+.+|
T Consensus         5 ~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~   35 (83)
T PRK10638          5 EIYTKATCPFCHRAKALLNS-------KGVSFQEIPID   35 (83)
T ss_pred             EEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence            34667899999977666664       23555556665

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=88.61  E-value=2.5  Score=28.24  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=16.9

Q ss_pred             CCCEEEEEEcc----cCCCCChHhHHHHHHH
Q 027311           88 KGKLLLIVNVA----SQCGLTNSNYTELSQL  114 (225)
Q Consensus        88 ~gk~vlv~F~~----twC~~C~~~~~~l~~l  114 (225)
                      ++++|+|+--.    +|||.|......|++.
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~   36 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL   36 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence            45566664322    5999999766665554

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=88.46  E-value=1.5  Score=28.79  Aligned_cols=31  Identities=10%  Similarity=0.229  Sum_probs=20.8

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +.|--++||.|.+.-..|.       .+|+.+.-|.++
T Consensus         4 ~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~   34 (80)
T COG0695           4 TIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVD   34 (80)
T ss_pred             EEEECCCCchHHHHHHHHH-------HcCCCcEEEEec
Confidence            4466789999997766666       345655555555

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=88.30  E-value=5.4  Score=36.69  Aligned_cols=23  Identities=17%  Similarity=0.095  Sum_probs=19.9

Q ss_pred             cCCCEEEEEEcccCCCCChHhHH
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYT  109 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~  109 (225)
                      -++||++|...++||-.|.-+..
T Consensus        41 ~edkPIflSIGys~CHWChVM~~   63 (667)
T COG1331          41 EEDKPILLSIGYSTCHWCHVMAH   63 (667)
T ss_pred             HhCCCEEEEeccccccchHHHhh
Confidence            36899999999999999996654

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.17  E-value=1.7  Score=28.10  Aligned_cols=42  Identities=10%  Similarity=0.103  Sum_probs=29.1

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC  149 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~  149 (225)
                      +-|++..||-|......|+++.-.     ...|-|..         +...+++|++
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt~---------Sm~NlKrFl~   46 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEITE---------SMANLKRFLH   46 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcCCC-----ceeeehhh---------hhhhHHHHHh
Confidence            448899999999877777665432     44444432         6788898873

>KOG3414 consensus Component of the U4/U6

Probab=87.70  E-value=2.2  Score=30.55  Aligned_cols=42  Identities=14%  Similarity=-0.035  Sum_probs=32.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      ..|.+||-|.-.|-|.|...=..|.++.+...+- .+|.-+.+
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdi   63 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDI   63 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEec
Confidence            4589999999999999999889999999888653 33443433

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]

Probab=86.93  E-value=1.1  Score=35.51  Aligned_cols=29  Identities=28%  Similarity=0.357  Sum_probs=24.7

Q ss_pred             eEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          193 SKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       193 ~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      .++|||+.|+|++...|..+++++++.+.
T Consensus       250 yV~L~D~s~kIRW~g~G~aTp~Eve~L~~  278 (287)
T KOG4614|consen  250 YVLLLDKSGKIRWQGFGTATPEEVEQLLS  278 (287)
T ss_pred             EEEEEccCceEEEeecCCCCHHHHHHHHH
Confidence            56899999999999999999987776554

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=86.44  E-value=3.9  Score=31.59  Aligned_cols=74  Identities=15%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +..-||+.||-..-..|+..-.+|..+.+.+-+  .+++-|+..                       +-|++        
T Consensus        83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae-----------------------~~PFl--------  129 (211)
T KOG1672|consen   83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAE-----------------------KAPFL--------  129 (211)
T ss_pred             cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecc-----------------------cCcee--------
Confidence            456899999988878999999999999988754  788888742                       12333        


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                       ..++              +|..+|+..++ ++|..+.+.+|.
T Consensus       130 -v~kL--------------~IkVLP~v~l~-k~g~~~D~iVGF  156 (211)
T KOG1672|consen  130 -VTKL--------------NIKVLPTVALF-KNGKTVDYVVGF  156 (211)
T ss_pred             -eeee--------------eeeEeeeEEEE-EcCEEEEEEeeH
Confidence             1111              77778998888 889998888764

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.26  E-value=2  Score=34.28  Aligned_cols=53  Identities=17%  Similarity=0.187  Sum_probs=39.4

Q ss_pred             EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEE
Q 027311           74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL  126 (225)
Q Consensus        74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv  126 (225)
                      ....+|.....-+..++++++.|..--||+|.+.++.+.+.+...++..+.+.
T Consensus        69 ~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~  121 (244)
T COG1651          69 YLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLR  121 (244)
T ss_pred             eecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEE
Confidence            33445555555555668999999999999999999999998877776544333

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=86.07  E-value=5.1  Score=28.02  Aligned_cols=32  Identities=13%  Similarity=-0.040  Sum_probs=21.8

Q ss_pred             ceeEEEECCCCcEEEEcCCCC-ChhhHHHHHHhh
Q 027311          191 NFSKFLVDKEGNVVERYAPTT-SPLSIEVVLECL  223 (225)
Q Consensus       191 ~P~~~lid~~G~I~~~~~g~~-~~~~l~~~l~~l  223 (225)
                      .|...+++.++ -.+...+.. +.+.|.+.++..
T Consensus        78 ~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          78 KPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            57878888766 344455566 777888777654

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=85.22  E-value=2  Score=30.31  Aligned_cols=50  Identities=12%  Similarity=0.198  Sum_probs=33.7

Q ss_pred             EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 027311           95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF  156 (225)
Q Consensus        95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (225)
                      .|+.++|+.|+.....|++       .|+.+..+++.    .++.+.+++.+++ +..+..+
T Consensus         3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~~   52 (117)
T TIGR01617         3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDGI   52 (117)
T ss_pred             EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCCH
Confidence            4668899999987776665       34555556654    2445778888887 5555444

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>PRK10824 glutaredoxin-4; Provisional

Probab=85.14  E-value=3.6  Score=29.09  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=17.2

Q ss_pred             CCEEEEEEcc----cCCCCChHhHHHHHHH
Q 027311           89 GKLLLIVNVA----SQCGLTNSNYTELSQL  114 (225)
Q Consensus        89 gk~vlv~F~~----twC~~C~~~~~~l~~l  114 (225)
                      .++|||+--.    +|||+|.+....|+++
T Consensus        14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~   43 (115)
T PRK10824         14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC   43 (115)
T ss_pred             cCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence            4566664333    4999999776666554

>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum

Probab=84.37  E-value=15  Score=27.62  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             CceecCeEEeCC-CCCeecCCcc---CCCEEEEEEcccCCCCChHhHHHHHHHHHHH
Q 027311           66 KTSVHDFSVKDA-KGQDVDLSIY---KGKLLLIVNVASQCGLTNSNYTELSQLYDKY  118 (225)
Q Consensus        66 g~~~p~f~l~~~-~G~~~~l~~~---~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~  118 (225)
                      |.-+|++.++.. +|+++.|.+.   .|++-|+.|-..--  +......+.++.+.+
T Consensus         1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~--~~~~~~~l~~~~~~L   55 (167)
T cd02979           1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIA--PAQQKSRLTQLCDAL   55 (167)
T ss_pred             CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCC--chhHHHHHHHHHHHH
Confidence            556788877775 8888888773   69999998865432  233334444444443

PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=82.92  E-value=12  Score=26.13  Aligned_cols=34  Identities=6%  Similarity=-0.159  Sum_probs=22.8

Q ss_pred             ceeEEEECCCCcEEEE-cCCCCChhhHHHHHHhhh
Q 027311          191 NFSKFLVDKEGNVVER-YAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       191 ~P~~~lid~~G~I~~~-~~g~~~~~~l~~~l~~ll  224 (225)
                      .|...+++-++.-.+. ..+..+++.+++.++..+
T Consensus        74 ~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~  108 (111)
T cd03072          74 LPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH  108 (111)
T ss_pred             CCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence            4777777776533344 445667788888888765

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=82.43  E-value=3.3  Score=28.43  Aligned_cols=48  Identities=17%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      ..|..++|+.|+.....|++       .|+.+-.+++.    ..+.+.+++.++. ...+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~   49 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLG   49 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcC
Confidence            34668899999977655554       33444444443    2344778888887 4444

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=82.14  E-value=3.1  Score=29.00  Aligned_cols=48  Identities=15%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 027311           95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA  154 (225)
Q Consensus        95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  154 (225)
                      .|..++|+.|++....|++       .|+.+-.+.+.    ..+.+.+++.+++ +..+.
T Consensus         3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~   50 (111)
T cd03036           3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGL   50 (111)
T ss_pred             EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence            3668899999977766655       34555555544    2344778888887 44443

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
2p5q_A	170	Crystal Structure Of The Poplar Glutathione Peroxid		4e-68
2vup_A	190	Crystal Structure Of A Type Ii Tryparedoxin-Dependa		1e-44
3e0u_A	166	Crystal Structure Of T. Cruzi Gpx1 Length = 166		2e-44
3dwv_A	187	Glutathione Peroxidase-Type Tryparedoxin Peroxidase		4e-44
2rm5_A	167	Glutathione Peroxidase-Type Tryparedoxin Peroxidase		1e-43
2obi_A	183	Crystal Structure Of The Selenocysteine To Cysteine		4e-43
2gs3_A	185	Crystal Structure Of The Selenocysteine To Glycine		3e-41
2wgr_A	169	Combining Crystallography And Molecular Dynamics: T		4e-41
2v1m_A	169	Crystal Structure Of Schistosoma Mansoni Glutathion		5e-41
3cmi_A	171	Crystal Structure Of Glutathione-Dependent Phosphol		1e-39
2p31_A	181	Crystal Structure Of Human Glutathione Peroxidase 7		1e-28
3kij_A	180	Crystal Structure Of The Human Pdi-Peroxidase Lengt		1e-28
3cyn_A	189	The Structure Of Human Gpx8 Length = 189		1e-28
2f8a_A	208	Crystal Structure Of The Selenocysteine To Glycine		2e-22
1gp1_A	198	The Refined Structure Of The Selenoenzyme Glutathio		3e-21
2i3y_A	215	Crystal Structure Of Human Glutathione Peroxidase 5		3e-20
2he3_A	208	Crystal Structure Of The Selenocysteine To Cysteine		3e-20
2r37_A	207	Crystal Structure Of Human Glutathione Peroxidase 3		5e-19

>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form Length = 170

Iteration: 1
 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 140/158 (88%)
Query: 60  TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
           T  S++  SVHDF+VKDAK  DVDLSI+KGK+LLIVNVAS+CG+TNSNY E++QLY+KYK
Sbjct: 3   TQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYK 62
Query: 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS 179
           +QGLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIFDK+DVNG+NA+PLY+ LK  
Sbjct: 63  DQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLG 122
Query: 180 KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           K G+FGD I+WNF+KFLV+K+G VV+RY PTTSPLS+E
Sbjct: 123 KWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLE 160

>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant Peroxidase From Trypanosoma Brucei Length = 190

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/163 (51%), Positives = 114/163 (69%), Gaps = 3/163 (1%)
Query: 56  RSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLY 115
           R    M++ S  S+ DF V DA  +  +L  +KG  LLI NVAS+CG T   Y   + LY
Sbjct: 17  RGGSHMSAAS--SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLY 74
Query: 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKH 175
           +KYK+QG  +LAFPCNQFG QEPG+ E+I+EF CT+FKAEFPI  K++VNG+NA PLY++
Sbjct: 75  NKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEY 134
Query: 176 LKSSKGGLF-GDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           +K +K G+    +IKWNF+ FL+D++G  VER++P  S   IE
Sbjct: 135 MKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIE 177

>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1 Length = 166

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 68  SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
           S+++F V  A G+  DLS +KG  LLI NVAS+CG T   Y   + LY+KYK QG  +LA
Sbjct: 4   SIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVLA 63
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-D 186
           FPCNQF  QEPG   +++EFACTRFKA+FPI  K+DVNG  A PLY+ +K++  GLFG  
Sbjct: 64  FPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLFGTK 123
Query: 187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           +IKWNF+ FL+D+ G  VER++P  S   IE
Sbjct: 124 AIKWNFTSFLIDRHGVPVERFSPGASVEDIE 154

>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase, Oxidized Form Length = 187

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 114/165 (69%), Gaps = 5/165 (3%)
Query: 54  ASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113
           +SR   + AS    S+ DF V DA  +  +L  +KG  LLI NVAS+CG T   Y   + 
Sbjct: 15  SSRKKMSAAS----SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATT 70
Query: 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLY 173
           LY+KYK+QG  +LAFP NQFG QEPG+ E+I+EF CT+FKAEFPI  K++VNG+NA PLY
Sbjct: 71  LYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLY 130
Query: 174 KHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           +++K +K G+    +IKWNF+ FL+D++G  VER++P  S   IE
Sbjct: 131 EYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIE 175

>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase, Oxidized Form Length = 167

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Query: 67  TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
           +S+ DF V DA  +  +L  +KG  LLI NVAS+CG T   Y   + LY+KYK+QG  +L
Sbjct: 4   SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVL 63
Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG- 185
           AFP NQFG QEPG+ E+I+EF CT+FKAEFPI  K++VNG+NA PLY+++K +K G+   
Sbjct: 64  AFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILAT 123
Query: 186 DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
            +IKWNF+ FL+D++G  VER++P  S   IE
Sbjct: 124 KAIKWNFTSFLIDRDGVPVERFSPGASVKDIE 155

>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant Of Human Phospholipid Hydroperoxide Glutathione Peroxidase (Gpx4) Length = 183

Iteration: 1
 Score =  171 bits (432), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 54  ASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113
           ASR D   A     S+H+FS KD  G  V+L  Y+G + ++ NVASQCG T  NYT+L  
Sbjct: 16  ASRDDWRCAR----SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVD 71
Query: 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLY 173
           L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+
Sbjct: 72  LHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLW 130
Query: 174 KHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IE
Sbjct: 131 KWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 176

>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant Of Human Glutathione Peroxidase 4(Gpx4) Length = 185

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/152 (53%), Positives = 107/152 (70%), Gaps = 3/152 (1%)
Query: 68  SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
           S+H+FS KD  G  V+L  Y+G + ++ NVASQ G T  NYT+L  L+ +Y   GL ILA
Sbjct: 28  SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILA 87
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFG 185
           FPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G
Sbjct: 88  FPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 146
Query: 186 DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
           ++IKWNF+KFL+DK G VV+RY P   PL IE
Sbjct: 147 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 178

>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case Of Schistosoma Mansoni Phospholipid Glutathione Peroxidase Length = 169

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Query: 62  ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
           + +S  S+++F+VKD  G DV L  Y+G + LIVNVA + G T+ NY +L +++ +   +
Sbjct: 4   SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGK 63
Query: 122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
           GL ILAFPCNQFG QEP    +I++F   ++  +F +F K+ VNG +A  LYK LKS + 
Sbjct: 64  GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQH 123
Query: 182 GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV-VLECL 223
           G   ++IKWNFSKFLVD++G  V+RY+PTT+P  IE  ++E L
Sbjct: 124 GTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166

>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione Peroxidase Length = 169

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Query: 62  ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
           + +S  S+++F+VKD  G DV L  Y+G + LIVNVA + G T+ NY +L +++ +   +
Sbjct: 4   SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGK 63
Query: 122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
           GL ILAFPCNQFG QEP    +I++F   ++  +F +F K+ VNG +A  LYK LKS + 
Sbjct: 64  GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQH 123
Query: 182 GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV-VLECL 223
           G   ++IKWNFSKFLVD++G  V+RY+PTT+P  IE  ++E L
Sbjct: 124 GTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166

>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae Length = 171

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 76  DAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGA 135
           D KGQ       KGK++LIVNVAS+CG T   Y EL  LY +YK++G  I+ FPCNQFG 
Sbjct: 19  DKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKRYKDEGFTIIGFPCNQFGH 77
Query: 136 QEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSK 194
           QEPG +E+I +F    +   FPI  K+DVNG N  P+YK LKS K G+ G   IKWNF K
Sbjct: 78  QEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEK 137
Query: 195 FLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           FLVDK+G V ERY+  T P S+   +E L
Sbjct: 138 FLVDKKGKVYERYSSLTKPSSLSETIEEL 166

>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7 Length = 181

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 64  QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL 123
           Q +   +DF   + +G+ V L  Y+G + L+VNVAS+CG T+ +Y  L QL         
Sbjct: 24  QQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHF 83
Query: 124 EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL 183
            +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +    
Sbjct: 84  NVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS--- 140
Query: 184 FGDSIKWNFSKFLVDKEGNVVERYAPTTS 212
            G    WNF K+LV  +G VV  + PT S
Sbjct: 141 -GKEPTWNFWKYLVAPDGKVVGAWDPTVS 168

>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase Length = 180

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 68  SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
           S + F VKDAKG+ V L  YKGK+ L+VNVAS C LT+ NY  L +L+ ++      +LA
Sbjct: 17  SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
           FPCNQFG  EP  +++++ FA   +   FPIF K+ + G    P ++ L  S        
Sbjct: 77  FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 132
Query: 188 IKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219
            +WNF K+LV+ EG VV+ + P      IEV+
Sbjct: 133 PRWNFWKYLVNPEGQVVKFWRPEE---PIEVI 161

>pdb|3CYN|A Chain A, The Structure Of Human Gpx8 Length = 189

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 89/152 (58%), Gaps = 7/152 (4%)
Query: 68  SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
           S + F VKDAKG+ V L  YKGK+ L+VNVAS C LT+ NY  L +L+ ++      +LA
Sbjct: 26  SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
           FPCNQFG  EP  +++++ FA   +   FPIF K+ + G    P ++ L  S        
Sbjct: 86  FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 141
Query: 188 IKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV 219
            +WNF K+LV+ EG VV+ + P      IEV+
Sbjct: 142 PRWNFWKYLVNPEGQVVKFWRPEE---PIEVI 170

>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant Of Human Glutathione Peroxidase 1 Length = 208

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 94/185 (50%), Gaps = 25/185 (13%)
Query: 64  QSKTSVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG 122
           QS  SV+ FS +  A G+ V L   +GK+LLI NVAS  G T  +YT++++L  +   +G
Sbjct: 21  QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG 80
Query: 123 LEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLK 177
           L +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+
Sbjct: 81  LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 140
Query: 178 SSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEV 218
            +      D+                   + WNF KFLV  +G  + RY+     + IE 
Sbjct: 141 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 200
Query: 219 VLECL 223
            +E L
Sbjct: 201 DIEAL 205

>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione Peroxidase At 0.2-Nm Resolution Length = 198

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 29/183 (15%)
Query: 68  SVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
           +V+ FS +  A G+  +LS  +GK+LLI NVAS  G T  +YT+++ L  +   +GL +L
Sbjct: 11  TVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVVL 70
Query: 127 AFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKS- 178
            FPCNQFG QE   NE+I    C +       F+  F +F+K +VNG+ A PL+  L+  
Sbjct: 71  GFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREV 128
Query: 179 ------SKGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL 220
                     L  D             + WNF KFLV  +G  V RY+     + IE  +
Sbjct: 129 LPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDI 188
Query: 221 ECL 223
           E L
Sbjct: 189 ETL 191

>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5 Length = 215

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 22/165 (13%)
Query: 65  SKTSVHDF-SVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL 123
            K +++D+ ++   K + V    Y GK +L VNVA+ CGLT + Y EL+ L ++ K  GL
Sbjct: 31  EKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGL 89
Query: 124 EILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS 178
            +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK 
Sbjct: 90  VVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKH 149
Query: 179 S---KGGLFG------------DSIKWNFSKFLVDKEGNVVERYA 208
           S      + G              I+WNF KFLV  +G  V R++
Sbjct: 150 SCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWS 194

>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant Of Human Glutathionine Peroxidase 2 (Gpx2) Length = 208

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 25/174 (14%)
Query: 68  SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
           S +D S  +  G+ VD + ++G+ +LI NVAS CG T  ++T+L++L  ++  + L +L 
Sbjct: 27  SFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRFPRR-LVVLG 85
Query: 128 FPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG 182
           FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK     
Sbjct: 86  FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 145
Query: 183 LFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIE 217
            + D                    + WNF KFL+  EG    RY+ T   ++IE
Sbjct: 146 PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIE 199

>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3 (Selenocysteine To Glycine Mutant) Length = 207

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 22/166 (13%)
Query: 68  SVHDFSVKDAKGQD-VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
           +++++      G++ +    Y GK +L VNVAS  GLT   Y EL+ L ++    GL IL
Sbjct: 16  TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 127 AFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS-- 179
            FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S  
Sbjct: 75  GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 180 -KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTS 212
               L G S            I+WNF KFLV  +G  + R+   T+
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTT 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	1e-110
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	1e-109
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	1e-107
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	1e-107
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	1e-107
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	1e-105
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	1e-102
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	1e-101
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	1e-100
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	8e-96
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	7e-93
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	2e-90
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	7e-12
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	2e-11
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	3e-11
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	6e-11
2lrt_A	152	Uncharacterized protein; structural genomics, thio	6e-11
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	7e-11
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	7e-11
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	8e-11
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	1e-10
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	1e-10
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-10
3raz_A	151	Thioredoxin-related protein; structural genomics,	3e-10
4evm_A	138	Thioredoxin family protein; structural genomics, n	5e-10
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	6e-10
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	9e-10
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	2e-09
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	2e-09
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	3e-09
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	3e-09
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	6e-09
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	7e-09
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	1e-08
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	6e-08
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	8e-08
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	2e-07
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	3e-07
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	2e-06
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	7e-06
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	1e-05
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	6e-05
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	1e-04
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	6e-04

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Length = 170

 Score =  311 bits (800), Expect = e-110
 Identities = 115/164 (70%), Positives = 143/164 (87%)

Query: 60  TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK 119
           T  S++  SVHDF+VKDAK  DVDLSI+KGK+LLIVNVAS+CG+TNSNY E++QLY+KYK
Sbjct: 3   TQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYK 62

Query: 120 NQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS 179
           +QGLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIFDK+DVNG+NA+PLY+ LK  
Sbjct: 63  DQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLG 122

Query: 180 KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           K G+FGD I+WNF+KFLV+K+G VV+RY PTTSPLS+E  ++ L
Sbjct: 123 KWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQL 166

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Length = 169

 Score =  311 bits (798), Expect = e-109
 Identities = 79/165 (47%), Positives = 112/165 (67%), Gaps = 2/165 (1%)

Query: 61  MASQSK--TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118
           M+S  K   S+++F+VKD  G DV L  Y+G + LIVNVA +CG T+ NY +L +++ + 
Sbjct: 1   MSSSHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRL 60

Query: 119 KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS 178
             +GL ILAFPCNQFG QEP    +I++F   ++  +F +F K+ VNG +A  LYK LKS
Sbjct: 61  VGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKS 120

Query: 179 SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
            + G   ++IKWNFSKFLVD++G  V+RY+PTT+P  IE  +  L
Sbjct: 121 RQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidoreductase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Length = 187

 Score =  305 bits (784), Expect = e-107
 Identities = 83/173 (47%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 52  FFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTEL 111
              S         + +S+ DF V DA  +  +L  +KG  LLI NVAS+CG T   Y   
Sbjct: 9   HHGSLRSSRKKMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETA 68

Query: 112 SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAP 171
           + LY+KYK+QG  +LAFP NQFG QEPG+ E+I+EF CT+FKAEFPI  K++VNG+NA P
Sbjct: 69  TTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHP 128

Query: 172 LYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           LY+++K +K G+    +IKWNF+ FL+D++G  VER++P  S   IE  L  L
Sbjct: 129 LYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPL 181

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Length = 190

 Score =  305 bits (784), Expect = e-107
 Identities = 85/172 (49%), Positives = 116/172 (67%), Gaps = 3/172 (1%)

Query: 53  FASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELS 112
              R    M++   +S+ DF V DA  +  +L  +KG  LLI NVAS+CG T   Y   +
Sbjct: 14  LVPRGGSHMSAA--SSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETAT 71

Query: 113 QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPL 172
            LY+KYK+QG  +LAFPCNQFG QEPG+ E+I+EF CT+FKAEFPI  K++VNG+NA PL
Sbjct: 72  TLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPL 131

Query: 173 YKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           Y+++K +K G+    +IKWNF+ FL+D++G  VER++P  S   IE  L  L
Sbjct: 132 YEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPL 183

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Length = 183

 Score =  305 bits (783), Expect = e-107
 Identities = 81/177 (45%), Positives = 109/177 (61%), Gaps = 3/177 (1%)

Query: 49  RPCFFASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNY 108
                ++        +   S+H+FS KD  G  V+L  Y+G + ++ NVASQCG T  NY
Sbjct: 7   HHHHGSACCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNY 66

Query: 109 TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN 168
           T+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EF    +  +F +F K+ VNGD+
Sbjct: 67  TQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF-AAGYNVKFDMFSKICVNGDD 125

Query: 169 AAPLYKHLKSSK--GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           A PL+K +K      G+ G++IKWNF+KFL+DK G VV+RY P   PL IE  L   
Sbjct: 126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} Length = 185

 Score =  301 bits (772), Expect = e-105
 Identities = 80/172 (46%), Positives = 110/172 (63%), Gaps = 3/172 (1%)

Query: 54  ASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ 113
            + + +  + +   S+H+FS KD  G  V+L  Y+G + ++ NVASQ G T  NYT+L  
Sbjct: 14  GTENLYFQSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVD 73

Query: 114 LYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLY 173
           L+ +Y   GL ILAFPCNQFG QEPG NE+I+EF    +  +F +F K+ VNGD+A PL+
Sbjct: 74  LHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF-AAGYNVKFDMFSKICVNGDDAHPLW 132

Query: 174 KHLKSSK--GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           K +K      G+ G++IKWNF+KFL+DK G VV+RY P   PL IE  L   
Sbjct: 133 KWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB: 3cyn_A Length = 180

 Score =  293 bits (751), Expect = e-102
 Identities = 64/171 (37%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 55  SRSDHTMASQSK--TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELS 112
               H M        S + F VKDAKG+ V L  YKGK+ L+VNVAS C LT+ NY  L 
Sbjct: 2   HHHHHHMKFLKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLK 61

Query: 113 QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPL 172
           +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G    P 
Sbjct: 62  ELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPA 121

Query: 173 YKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           ++ L  S         +WNF K+LV+ EG VV+ + P      I   +  L
Sbjct: 122 FRFLVDSSKK----EPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL 168

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 181

 Score =  289 bits (742), Expect = e-101
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 4/171 (2%)

Query: 53  FASRSDHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELS 112
             + + +  + Q +   +DF   + +G+ V L  Y+G + L+VNVAS+CG T+ +Y  L 
Sbjct: 13  LGTENLYFQSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQ 72

Query: 113 QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPL 172
           QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P 
Sbjct: 73  QLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPA 132

Query: 173 YKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           +K+L  +     G    WNF K+LV  +G VV  + PT S   +   +  L
Sbjct: 133 FKYLAQTS----GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL 179

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Length = 171

 Score =  288 bits (739), Expect = e-100
 Identities = 79/162 (48%), Positives = 100/162 (61%), Gaps = 2/162 (1%)

Query: 63  SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG 122
               +  +  +  D KGQ       KGK++LIVNVAS+CG T   Y EL  LY +YK++G
Sbjct: 6   HHHMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKRYKDEG 64

Query: 123 LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG 182
             I+ FPCNQFG QEPG +E+I +F    +   FPI  K+DVNG N  P+YK LKS K G
Sbjct: 65  FTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSG 124

Query: 183 LFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           + G   IKWNF KFLVDK+G V ERY+  T P S+   +E L
Sbjct: 125 MLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEEL 166

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Length = 208

 Score =  277 bits (711), Expect = 8e-96
 Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 25/189 (13%)

Query: 60  TMASQSKTSVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118
            +  QS  SV+ FS +  A G+ V L   +GK+LLI NVAS  G T  +YT++++L  + 
Sbjct: 17  NLYFQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRL 76

Query: 119 KNQGLEILAFPCNQFGAQEPGDNEQIQEFAC-----TRFKAEFPIFDKVDVNGDNAAPLY 173
             +GL +L FPCNQFG QE   NE+I            F+  F +F+K +VNG  A PL+
Sbjct: 77  GPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLF 136

Query: 174 KHLKSSKGG-------------------LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL 214
             L+ +                      +  + + WNF KFLV  +G  + RY+     +
Sbjct: 137 AFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTI 196

Query: 215 SIEVVLECL 223
            IE  +E L
Sbjct: 197 DIEPDIEAL 205

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} Length = 215

 Score =  270 bits (692), Expect = 7e-93
 Identities = 61/198 (30%), Positives = 90/198 (45%), Gaps = 22/198 (11%)

Query: 47  VSRPCFFASRSDHTMASQSKTSVHDFSVKDA-KGQDVDLSIYKGKLLLIVNVASQCGLTN 105
           +     +            K +++D+      K + V    Y GK +L VNVA+ CGLT 
Sbjct: 13  LGTENLYFQSMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT- 71

Query: 106 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC-----TRFKAEFPIFD 160
           + Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I            F   F +F+
Sbjct: 72  AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFE 131

Query: 161 KVDVNGDNAAPLYKHLKSSKGGLFG---------------DSIKWNFSKFLVDKEGNVVE 205
           K DVNG+    ++  LK S                       I+WNF KFLV  +G  V 
Sbjct: 132 KGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVM 191

Query: 206 RYAPTTSPLSIEVVLECL 223
           R++   +  S++  +   
Sbjct: 192 RWSHRATVSSVKTDILAY 209

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Length = 207

 Score =  264 bits (676), Expect = 2e-90
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 22/189 (11%)

Query: 56  RSDHTMASQSKTSVHDFSVKDAKGQD-VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQL 114
           +S          +++++      G++ +    Y GK +L VNVAS  GLT   Y EL+ L
Sbjct: 4   KSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNAL 62

Query: 115 YDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC-----TRFKAEFPIFDKVDVNGDNA 169
            ++    GL IL FPCNQFG QEPG+N +I            F   F +F+K DVNG+  
Sbjct: 63  QEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKE 122

Query: 170 APLYKHLKSSKGGLFG---------------DSIKWNFSKFLVDKEGNVVERYAPTTSPL 214
              Y  LK+S                       I+WNF KFLV  +G  + R+   T+  
Sbjct: 123 QKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVS 182

Query: 215 SIEVVLECL 223
           ++++ +   
Sbjct: 183 NVKMDILSY 191

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 27/143 (18%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG---LTNSNYTELSQLYDKYKNQGLEILA 127
           DF+     G +  +S  K +  ++      C         + E+    +  +N  L +LA
Sbjct: 9   DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLA 68

Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN-AAPLYKHLKSSKGGLFGD 186
              ++       + E+    A       + +    +  GD     LY             
Sbjct: 69  IYPDE-------NREEWATKA-VYMPQGWIVG--WNKAGDIRTRQLYD------------ 106

Query: 187 SIKWNFSKFLVDKEGNVVERYAP 209
            I+   + +L+D    V+ +   
Sbjct: 107 -IRATPTIYLLDGRKRVILKDTS 128

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 25/152 (16%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
            FS  D  G+ V L+  KGK + I +V A+ CG        L +L +KY  + +  ++  
Sbjct: 12  SFSYPDINGKTVSLADLKGKYIYI-DVWATWCGPCRGELPALKELEEKYAGKDIHFVSLS 70

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
           C++       + +  +                V  +      L+     +    +   I 
Sbjct: 71  CDK-------NKKAWENM--------------VTKDQLKGIQLHMGTDRTFMDAYL--IN 107

Query: 190 WNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221
                 L+D++G ++       S         
Sbjct: 108 GIPRFILLDRDGKIISANMTRPSDPKTAEKFN 139

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 20/138 (14%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
             ++K A  +   + + K K  LI    AS C L  S   +  +     K     ++   
Sbjct: 20  MSTMKTADNRPASVYLKKDKPTLI-KFWASWCPLCLSELGQAEKWAQDAKFSSANLITV- 77

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
               G      + + Q++       + P+    D  G   A            +      
Sbjct: 78  -ASPGFLHEKKDGEFQKWYAGLNYPKLPVV--TDNGGT-IAQNL--------NISV---- 121

Query: 190 WNFSKFLVDKEGNVVERY 207
           +     L+ K+G+V    
Sbjct: 122 YPSW-ALIGKDGDVQRIV 138

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 57.4 bits (139), Expect = 6e-11
 Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 31/152 (20%)

Query: 63  SQSKTSV----HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG---LTNSNYTELSQLY 115
           S +K  +     +F+     G    L  +  +  L+      C               + 
Sbjct: 1   SNAKNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVIN 60

Query: 116 DKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD-NAAPLYK 174
                + L++L+   ++       + ++ ++     F  E+      D         LY 
Sbjct: 61  GFTAAKKLKVLSIYPDE-------ELDEWKKHR-NDFAKEWTNG--YDKELVIKNKNLYD 110

Query: 175 HLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER 206
                        ++   + +L+DK   V+ +
Sbjct: 111 -------------LRAIPTLYLLDKNKTVLLK 129

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 25/145 (17%)

Query: 64  QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL 123
             + S+ D  +KD KG    L+  KGK++LI        ++ ++   L +LY+KY +QG 
Sbjct: 10  IKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGF 69

Query: 124 EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP-IFDKVDVNGDNAAPLYKHLKSSKGG 182
           EI     +        D    +  A       +  + D           LY         
Sbjct: 70  EIYQISLDG-------DEHFWKTSA---DNLPWVCVRDANGAYSS-YISLYN-------- 110

Query: 183 LFGDSIKWNFSKFLVDKEGNVVERY 207
                +    S FLV++   +  R 
Sbjct: 111 -----VTNLPSVFLVNRNNELSARG 130

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 38/160 (23%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYT------ELSQLYDKYKNQGL 123
           +F ++D  G+ ++LS  KGK +  +N   + C               ++  Y  +K+QG+
Sbjct: 8   NFVLEDTNGKRIELSDLKGKGVF-LNFWGTWCE------PCKKEFPYMANQYKHFKSQGV 60

Query: 124 EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL 183
           EI+A    +           +  F    +   FP+   +D +       Y          
Sbjct: 61  EIVAVNVGE-------SKIAVHNFM-KSYGVNFPVV--LDTDRQ-VLDAYD--------- 100

Query: 184 FGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
               +    + FL++ EG VV+    T +   I   +  +
Sbjct: 101 ----VSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI 136

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 57.4 bits (139), Expect = 7e-11
 Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 27/151 (17%)

Query: 63  SQSKTSV----HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY 118
           S +   +     +  + D  G    L   + K  ++    SQCG       +L   + K 
Sbjct: 1   SNAPLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKN 60

Query: 119 KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN-AAPLYKHLK 177
           + +G+++ A    +        +E+  +F  ++    +      D          Y    
Sbjct: 61  RAKGIQVYAANIER-------KDEEWLKFIRSKKIGGWLNVR--DSKNHTDFKITYD--- 108

Query: 178 SSKGGLFGDSIKWNFSKFLVDKEGNVVERYA 208
                     I      +++DK   ++ +  
Sbjct: 109 ----------IYATPVLYVLDKNKVIIAKRI 129

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 57.3 bits (139), Expect = 8e-11
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 37/144 (25%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYT------ELSQLYDKYKNQGL 123
           DF++    G+ V LS  KG++++ VN  A+ C               + +L      +  
Sbjct: 10  DFTLNTLNGEVVKLSDLKGQVVI-VNFWATWCP------PCREEIPSMMRLNAAMAGKPF 62

Query: 124 EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL 183
            +L        + + G    ++EF   +     P+   +D +      LY        G 
Sbjct: 63  RMLCV------SIDEGGKVAVEEFF-RKTGFTLPVL--LDADKR-VGKLY--------GT 104

Query: 184 FGDSIKWNFSKFLVDKEGNVVERY 207
            G  +      F++D+ G ++++ 
Sbjct: 105 TG--VP---ETFVIDRHGVILKKV 123

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 25/138 (18%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
            FS+ D  G+ V  +  +GK+ L +N     C    S   ++ +  + YKN+  ++LA  
Sbjct: 10  AFSLPDLHGKTVSNADLQGKVTL-INFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAV- 67

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
                AQ     E ++++    +   F +    D +       +               +
Sbjct: 68  -----AQPIDPIESVRQYV-KDYGLPFTVM--YDADKA-VGQAFG-------------TQ 105

Query: 190 WNFSKFLVDKEGNVVERY 207
              +  L+ K+G +++ Y
Sbjct: 106 VYPTSVLIGKKGEILKTY 123

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 41/171 (23%)

Query: 62  ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYT------ELSQL 114
           A    T    FS     G+    +  KGK  + VN  A+ C              ++ Q+
Sbjct: 7   ADARPTPAPSFSGVTVDGKPFSSASLKGKAYI-VNFFATWCP------PCRSEIPDMVQV 59

Query: 115 YDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYK 174
              + ++G   +    N+           ++ +        +P+   +       A    
Sbjct: 60  QKTWASRGFTFVGIAVNE-------QLPNVKNYM-KTQGIIYPVM--MATPELIRA---- 105

Query: 175 HLKSSKGGLFGDSIKWNF----SKFLVDKEGNVVERYAPTTSPLSIEVVLE 221
                    F   I        + F++D  GNV        S    + +++
Sbjct: 106 ---------FNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVK 147

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 25/141 (17%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
             +  D KG  V L+ +KGK +L+ +   + C         L + Y+ +K++G  I    
Sbjct: 11  AITGIDLKGNSVSLNDFKGKYVLV-DFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVS 69

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFP-IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSI 188
            ++         E  ++      K+ +  +  + D   D     Y              I
Sbjct: 70  TDR-------REEDWKKAI-EEDKSYWNQVLLQKDDVKD-VLESYC-------------I 107

Query: 189 KWNFSKFLVDKEGNVVERYAP 209
                  LVD EG +V +   
Sbjct: 108 VGFPHIILVDPEGKIVAKELR 128

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 22/138 (15%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
           D            L   K  + + VN+ A+ CG        +S+ Y   K   ++++   
Sbjct: 6   DELAGWKDNTPQSLQSLKAPVRI-VNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGI- 63

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
                A +   ++ I  F   +    +PI       G N+    K         +G+++ 
Sbjct: 64  -----ALD--TSDNIGNFL-KQTPVSYPI---WRYTGANSRNFMK--------TYGNTVG 104

Query: 190 WNFSKFLVDKEGNVVERY 207
                 +   +    +  
Sbjct: 105 VLPFTVVEAPKCGYRQTI 122

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 35/159 (22%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYT-------ELSQLYDKYKNQG 122
           DF +    G+   LS YKGK + +    AS C               +  ++  +  +  
Sbjct: 4   DFELMGVDGKTYRLSDYKGKKVYL-KFWASWCS-------ICLASLPDTDEIAKEAGDDY 55

Query: 123 LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG 182
           + +        G +        + +         P+   VD +G      Y         
Sbjct: 56  VVLTV---VSPGHKGEQSEADFKNWYKGLDYKNLPVL--VDPSGK-LLETYG-------- 101

Query: 183 LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221
                ++   ++  +DKEG +V+ +       +I   L+
Sbjct: 102 -----VRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLK 135

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 23/138 (16%), Positives = 56/138 (40%), Gaps = 24/138 (17%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
            F +K  +G+D+ +   KG+  + ++   S C        +    YD + +  ++++   
Sbjct: 17  VFLMKTIEGEDISIP-NKGQKTI-LHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTV- 73

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
            N   +++  + + +++F     K  FPI   +D  G+     Y              I 
Sbjct: 74  -NLVNSEQ--NQQVVEDFI-KANKLTFPIV--LDSKGE-LMKEYH-------------II 113

Query: 190 WNFSKFLVDKEGNVVERY 207
              + FL++++G + +  
Sbjct: 114 TIPTSFLLNEKGEIEKTK 131

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 27/138 (19%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
           DF++    G  V LS   G ++  ++  AS CG    ++  ++Q+  KYK +G +++A  
Sbjct: 11  DFALPGKTGV-VKLSDKTGSVVY-LDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVN 68

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
            +              +F   +  AEF +    D  G     LY              +K
Sbjct: 69  LDA-------KTGDAMKFL-AQVPAEFTVA--FDPKGQ-TPRLYG-------------VK 104

Query: 190 WNFSKFLVDKEGNVVERY 207
              + FL+D+ G V+ ++
Sbjct: 105 GMPTSFLIDRNGKVLLQH 122

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 28/145 (19%)

Query: 71  DFSVKDAKGQDVDLS--IYKGKLLLIVNV-ASQCG--LTNSNYTELSQLYDKYK-NQGLE 124
            FS+ +AKG+ +  S   +K K LLI N  AS         + +EL ++Y KYK N+ + 
Sbjct: 13  FFSLPNAKGEKITRSSDAFKQKSLLI-NFWASWNDSISQKQSNSELREIYKKYKKNKYIG 71

Query: 125 ILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF 184
           +L    +        D +Q ++    R   ++             A  Y           
Sbjct: 72  MLGISLDV-------DKQQWKDAI-KRDTLDWEQVCDFGGLNSEVAKQYS---------- 113

Query: 185 GDSIKWNFSKFLVDKEGNVVERYAP 209
              I    +  L+  +G ++ +   
Sbjct: 114 ---IYKIPANILLSSDGKILAKNLR 135

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 30/143 (20%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCG-----LTNSNYTELSQLYDKYKNQGLE 124
           D + +DA G+   LS ++GK LL+ N+ A+ C      +       L +L  K      E
Sbjct: 42  DLAFEDADGKPKKLSDFRGKTLLV-NLWATWCVPCRKEMPA-----LDELQGKLSGPNFE 95

Query: 125 ILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF 184
           ++A         +  D E+ + F           F+      D  A +++ LK+      
Sbjct: 96  VVAI------NIDTRDPEKPKTFLKEANLTRLGYFN------DQKAKVFQDLKAIGR--- 140

Query: 185 GDSIKWNFSKFLVDKEGNVVERY 207
                   +  LVD +G  +   
Sbjct: 141 ---ALGMPTSVLVDPQGCEIATI 160

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 45/146 (30%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYT-------ELSQLYDKYKNQG 122
           +F +    G++  L+ Y+GK++L VN  AS C                + +L   +    
Sbjct: 23  NFKLPTLSGENKSLAQYRGKIVL-VNFWASWCP-------YCRDEMPSMDRLVKSFPKGD 74

Query: 123 LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG 182
           L +LA   N          ++  E    R    F      D  G      Y        G
Sbjct: 75  LVVLAV--NV--------EKRFPEKY-RRAPVSFNFL--SDATGQ-VQQRY--------G 112

Query: 183 LFGDSIKWNF-SKFLVDKEGNVVERY 207
                        F+VD++G + +R 
Sbjct: 113 ANR------LPDTFIVDRKGIIRQRV 132

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 28/162 (17%)

Query: 71  DFSVKD--AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYT-ELSQLYDKYKNQGLEILA 127
           +  ++       D+ L+  +GK+++I      C     +      ++   +    + +L 
Sbjct: 8   ELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLG 67

Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
                   +       ++ F    ++ +FP+   VD  GD A P                
Sbjct: 68  LHTVFEHHEA-MTPISLKAFL-HEYRIKFPVG--VDQPGDGAMP---------------R 108

Query: 188 IKWNF------SKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
               +      S  L+DK G++   +    S L +   +  L
Sbjct: 109 TMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATL 150

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 14/138 (10%), Positives = 38/138 (27%), Gaps = 25/138 (18%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130
                    +        G+  L+   A+    + +   +L+   +K+    + + +   
Sbjct: 15  RIEFLGNDAK-ASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISM 73

Query: 131 NQFGAQEPGDNEQIQEFACTRFKAEFPI--FDKVDVNGDNAAPLYKHLKSSKGGLFGDSI 188
                    + E I        K +      + +    +     Y              +
Sbjct: 74  --------DEKESIFTETVKIDKLDLSTQFHEGLGKESE-LYKKYD-------------L 111

Query: 189 KWNFSKFLVDKEGNVVER 206
           +  F  FL++ EG ++  
Sbjct: 112 RKGFKNFLINDEGVIIAA 129

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 53.8 bits (129), Expect = 7e-09
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 25/141 (17%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYT--ELSQLYDKYKNQGLEILA 127
              +     + +DL   +GK++L ++  A  C   N       +   Y  YK+ GL ++ 
Sbjct: 64  TGWLNTPGNKPIDLKSLRGKVVL-IDFWAYSCI--NCQRAIPHVVGWYQAYKDSGLAVIG 120

Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
               ++  ++      + + A       +PI   +D N       Y              
Sbjct: 121 VHTPEYAFEK--VPGNVAKGA-ANLGISYPIA--LDNNYA-TWTNY--------RNRY-- 164

Query: 188 IKWNFSKFLVDKEGNVVERYA 208
             W  +++L+D  G V     
Sbjct: 165 --WP-AEYLIDATGTVRHIKF 182

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 28/144 (19%)

Query: 71  DFSVKDAKGQDVDLSI--YKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKY-KNQGLEIL 126
            FS+ + KG+ +  S   ++ + LL+ N  AS C        EL +L  +Y KN+   +L
Sbjct: 13  YFSLPNEKGEKLSRSAERFRNRYLLL-NFWASWCDPQPEANAELKRLNKEYKKNKNFAML 71

Query: 127 AFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI-FDKVDVNGDNAAPLYKHLKSSKGGLFG 185
               +        D E  +     +    +    D   ++ +  A  Y            
Sbjct: 72  GISLDI-------DREAWETAI-KKDTLSWDQVCDFTGLSSE-TAKQYA----------- 111

Query: 186 DSIKWNFSKFLVDKEGNVVERYAP 209
             I    +  L+   G ++ R   
Sbjct: 112 --ILTLPTNILLSPTGKILARDIQ 133

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 49.4 bits (118), Expect = 6e-08
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 25/137 (18%)

Query: 79  GQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE 137
            + +     +GK++++      C    N    +  +++       ++++           
Sbjct: 20  HEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDV 79

Query: 138 PGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNF----- 192
               E ++ F    F  +FP+   VD+  +                   S    +     
Sbjct: 80  -MTPEALKVFI-DEFGIKFPVA--VDMPREGQRIP--------------STMKKYRLEGT 121

Query: 193 -SKFLVDKEGNVVERYA 208
            S  L D++G + +   
Sbjct: 122 PSIILADRKGRIRQVQF 138

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 30/155 (19%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
           DF + D KGQ V  +      ++     AS C        E   L+   +  G+      
Sbjct: 13  DFLLLDPKGQPVTPATVSKPAVI--VFWASWCT---VCKAEFPGLHRVAEETGVPFYV-- 65

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPI-FDKVDVNGDNAAPLYKHLKSSKGGLFGDSI 188
                 +     E + E+    +    P+     D   +  A  +         + G   
Sbjct: 66  ---ISREPRDTREVVLEYM-KTYPRFIPLLASDRDRPHE-VAARF--------KVLG--Q 110

Query: 189 KWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
            W    F+VD+EG VV  +A        E +L+ L
Sbjct: 111 PWT---FVVDREGKVVALFA---GRAGREALLDAL 139

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 38/151 (25%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCG-----LTNSNYTELSQLYDKYKNQGLE 124
            FS+    G+ + L+   G ++++    A+ C              L +L +KY+   + 
Sbjct: 19  SFSLTTIDGEVISLNNVGGDVVIL-WFMAAWCPSCVYMADL-----LDRLTEKYREISVI 72

Query: 125 ILAF---------PCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKH 175
            + F           N+ G   P   E  ++F    +     I   V  +G      +  
Sbjct: 73  AIDFWTAEALKALGLNKPGYPPPDTPEMFRKFI-ANYGDPSWIM--VMDDGS-LVEKFN- 127

Query: 176 LKSSKGGLFGDSIKWNFSKFLVDKEGNVVER 206
                       ++      ++DK  NV+  
Sbjct: 128 ------------VRSIDYIVIMDKSSNVLYA 146

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 34/145 (23%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYT------ELSQLYDKYKNQGL 123
           DF++    G+ V LS  +GK++++    AS CG              + +          
Sbjct: 15  DFTITLTDGKQVTLSSLRGKVVML-QFTASWCG------VCRKEMPFIEKDIWLKHKDNA 67

Query: 124 EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL 183
           +      ++         E++  FA       +P+   +D   D  A             
Sbjct: 68  DFALIGIDR-----DEPLEKVLAFA-KSTGVTYPLG--LDPGADIFA------------K 107

Query: 184 FGDSIKWNFSKFLVDKEGNVVERYA 208
           +           L+D+EG +V+   
Sbjct: 108 YALRDAGITRNVLIDREGKIVKLTR 132

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 24/141 (17%)

Query: 71  DFSVKDA--KGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILA 127
           + + + A   G+     +   K  L ++  +  C L      ++++  DKY++Q L ++A
Sbjct: 9   ELTGEKAWLNGEVTREQLIGEKPTL-IHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVA 66

Query: 128 FPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS 187
              +   +++  D  +I+E A        PIF  VD +                  F + 
Sbjct: 67  V--HMPRSEDDLDPGKIKETA-AEHDITQPIF--VDSDHALTD------------AFENE 109

Query: 188 IKWNFSKFLVDKEGNVVERYA 208
                + ++ DK G +    A
Sbjct: 110 -YVP-AYYVFDKTGQLRHFQA 128

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 30/146 (20%)

Query: 71  DFSVKD--AKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQG----- 122
           D        +G  ++LS ++ ++++ +N     C    S   +L  ++++ +  G     
Sbjct: 39  DIGGDSLMEEGTQINLSDFENQVVI-LNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTP 97

Query: 123 -LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
              +L               +  Q+F  T    ++P     D     AA L        G
Sbjct: 98  GGTVLGI------NVRDYSRDIAQDFV-TDNGLDYPSI--YDPPFMTAASL--------G 140

Query: 182 GLFGDSIKWNFSKFLVDKEGNVVERY 207
           G+    I    +  ++DK+      +
Sbjct: 141 GVPASVIP---TTIVLDKQHRPAAVF 163

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 20/137 (14%), Positives = 37/137 (27%), Gaps = 28/137 (20%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
            F+     G   D +  +GK  + +      C   N+    LSQ+        +  +   
Sbjct: 6   QFTATTLSGAPFDGASLQGKPAV-LWFWTPWCPFCNAEAPSLSQVAAANP--AVTFV--- 59

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
               G     D   +Q F  +++   F      D +G      Y              + 
Sbjct: 60  ----GIATRADVGAMQSFV-SKYNLNFTNL--NDADGV-IWARYN-------------VP 98

Query: 190 WNFSKFLVDKEGNVVER 206
           W  +      +G     
Sbjct: 99  WQPAFVFYRADGTSTFV 115

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKY-KNQGLEILA 127
             +   +K  +V L    GK + +    AS C         L++ Y+K+   +  E++ 
Sbjct: 10  GATNLLSKSGEVSLGSLVGKTVFL-YFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVL 67

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Length = 218

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 67  TSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEI 125
           T   DF + DA G    L+ +K    LL+  ++++C         L++    Y  QGL +
Sbjct: 36  TRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAV 95

Query: 126 LAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP 157
           +A   N   A      E++       +   FP
Sbjct: 96  VAINSNDAQAFPEETLERVGAEV-KAYGYGFP 126

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 23/140 (16%), Positives = 33/140 (23%), Gaps = 39/140 (27%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYT------ELSQLYDKYKNQGL 123
            FS K   G D       GK  + +   A  C       T       + Q+   +     
Sbjct: 7   QFSAKTLDGHDFHGESLLGKPAV-LWFWAPWCP------TCQGEAPVVGQVAASHPEVTF 59

Query: 124 EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL 183
                     G         +QEF        F      D +G      +          
Sbjct: 60  ---------VGVAGLDQVPAMQEFVNKYPVKTFTQL--ADTDGS-VWANFG--------- 98

Query: 184 FGDSIKWNFSKFLVDKEGNV 203
               +    +   VD  GNV
Sbjct: 99  ----VTQQPAYAFVDPHGNV 114

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 10/36 (27%)

Query: 187 SIKWNFSKFLVDKEGNVVERYAPTTSP-LSIEVVLE 221
           ++K    K     + ++ + YA  ++P L+I+  +E
Sbjct: 21  ALK----KL----QASL-KLYADDSAPALAIKATME 47

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY-KNQGLEILA 127
                     +V++    GKL+     AS C        +L + YDK+ +++  E++ 
Sbjct: 10  GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVF 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	100.0
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	100.0
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	100.0
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	100.0
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	100.0
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	100.0
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	100.0
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	100.0
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	100.0
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	100.0
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	100.0
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.98
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.97
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.97
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.97
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.97
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.97
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.97
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.97
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.97
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.97
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.97
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.97
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.96
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.96
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.96
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.96
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.96
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.96
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.96
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.96
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.96
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.96
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.96
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.96
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.96
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.96
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.96
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.96
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.96
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.96
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.96
3me7_A	170	Putative uncharacterized protein; electron transfe	99.96
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.96
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.96
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.96
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.96
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.96
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.95
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.95
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.95
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.95
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.95
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.95
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.95
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.95
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.95
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.95
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.95
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.95
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.95
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.95
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.95
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.95
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.95
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.95
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.95
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.95
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.95
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.95
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.95
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.95
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.95
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.95
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.94
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.94
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.94
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.94
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.94
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.94
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.9
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.94
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.94
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.94
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.94
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.94
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.94
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.94
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.93
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.93
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.93
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.93
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.92
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.92
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.92
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.92
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.92
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.85
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.91
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.91
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.9
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.9
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.87
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.84
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.83
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.78
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.77
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.77
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.74
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.74
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.7
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.69
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.66
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.65
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.65
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.64
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.64
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.64
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.64
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.64
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.64
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.63
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.63
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.63
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.63
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.62
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.62
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.62
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.62
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.61
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.61
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.61
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.61
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.61
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.61
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.6
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.6
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.6
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.6
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.6
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.6
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.59
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.59
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.59
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.59
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.59
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.59
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.58
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.58
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.58
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.58
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.58
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.57
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.57
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.57
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.57
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.57
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.56
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.33
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.55
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.55
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.55
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.54
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.54
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.54
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.54
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.54
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.54
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.54
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.54
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.53
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.52
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.52
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.52
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.51
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.51
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.51
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.51
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.5
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.5
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.5
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.5
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.49
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.49
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.2
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.46
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.45
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.45
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.42
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.41
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.4
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.4
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.4
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.39
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.35
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.33
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.33
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.32
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.27
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.26
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.26
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.26
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.25
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.25
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.25
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.24
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.23
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.23
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.19
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.17
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.17
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.17
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.17
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.15
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.15
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.12
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.1
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.1
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.07
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.0
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.99
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.98
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.96
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.93
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.92
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.9
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.83
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.83
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.78
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.75
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.67
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.66
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	98.65
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.63
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.6
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.55
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.53
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.51
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.5
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.45
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.45
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.45
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.4
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.35
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.12
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.12
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.06
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.04
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.96
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.9
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.85
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.83
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.79
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.79
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.76
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.71
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.59
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.55
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.51
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.49
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.46
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.38
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.37
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.06
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.97
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	96.94
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	96.92
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	96.85
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	96.81
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.77
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	96.75
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	96.12
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	96.11
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	95.82
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	95.82
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	95.5
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	95.31
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	95.06
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	94.18
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	94.11
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	93.98
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	93.03
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	92.97
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	92.81
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	92.56
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	91.81
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	91.76
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	91.72
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	91.68
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	91.25
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	91.21
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	90.99
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	90.67
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	88.73
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	88.37
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	87.53
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	87.1
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	86.95
3l78_A	120	Regulatory protein SPX; transcription, transcripti	85.55
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	84.8
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	83.69
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	83.11
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	82.43
3fz4_A	120	Putative arsenate reductase; APC61768, structural	81.61
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	80.93

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=221.09  Aligned_cols=163  Identities=50%  Similarity=0.869  Sum_probs=141.5

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ....+|+++|+|+++|.+|+.+++++++||++||+||++|||+|+.++|.|++++++|+++++++++|++|.++.+++++
T Consensus        21 ~~~~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~  100 (185)
T 2gs3_A           21 QSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGS  100 (185)
T ss_dssp             GGGGGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSC
T ss_pred             hhccCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCC
Confidence            44678999999999999999999999999999999999999999999999999999999989999999999776677778


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCC--CCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG--GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~  218 (225)
                      .+++++|+ ++++++||++.+.|..+.....+|+.+....+  +..+..+.++|++||||++|+|++++.|..+++++++
T Consensus       101 ~~~~~~~~-~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  179 (185)
T 2gs3_A          101 NEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK  179 (185)
T ss_dssp             HHHHHHHH-HHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGG
T ss_pred             HHHHHHHH-HHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHH
Confidence            99999999 88999999986667777766667766544332  3333347788999999999999999999989999999


Q ss_pred             HHHhhh
Q 027311          219 VLECLC  224 (225)
Q Consensus       219 ~l~~ll  224 (225)
                      .|+++|
T Consensus       180 ~i~~lL  185 (185)
T 2gs3_A          180 DLPHYF  185 (185)
T ss_dssp             GHHHHC
T ss_pred             HHHHhC
Confidence            999875

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=100.00  E-value=2.2e-34  Score=217.55  Aligned_cols=162  Identities=48%  Similarity=0.846  Sum_probs=138.8

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      .++|+.+|+|++++.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++++++++|++|.++.+++++.+
T Consensus         5 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~   84 (169)
T 2v1m_A            5 HKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEA   84 (169)
T ss_dssp             --CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHH
T ss_pred             ccCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHH
Confidence            47899999999999999999999999999999999999999999999999999999998999999999977667778899


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                      ++++|+.++++++||++.+.|..+......|+++.....+..+..+.++|++||||++|+|++++.|..+++++.+.|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  164 (169)
T 2v1m_A           85 EIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIME  164 (169)
T ss_dssp             HHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHH
Confidence            99999337889999998655667666656676654433333332477889999999999999999999899999999999


Q ss_pred             hh
Q 027311          223 LC  224 (225)
Q Consensus       223 ll  224 (225)
                      +|
T Consensus       165 ll  166 (169)
T 2v1m_A          165 LL  166 (169)
T ss_dssp             HH
T ss_pred             Hh
Confidence            87

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=220.73  Aligned_cols=166  Identities=49%  Similarity=0.868  Sum_probs=142.0

Q ss_pred             CcccccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           58 DHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        58 ~~~~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      ......++|+.+|+|++++.+|+.+++++++||++||+||++||++|+.+++.|++++++|++++++|++|++|.++.++
T Consensus        16 ~~~~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e   95 (183)
T 2obi_A           16 ASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE   95 (183)
T ss_dssp             ---CCGGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred             hcccCCcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCC
Confidence            34455689999999999999999999999999999999999999999999999999999999989999999999777777


Q ss_pred             CCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCC--CCCCCccccceeEEEECCCCcEEEEcCCCCChhh
Q 027311          138 PGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG--GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLS  215 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~  215 (225)
                      +++.+++++|+ ++++++||++.+.|.++.....+|+.+.....  +..+..+.++|++||||++|+|++++.|..++++
T Consensus        96 ~~~~~~~~~~~-~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~  174 (183)
T 2obi_A           96 PGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLV  174 (183)
T ss_dssp             CSCHHHHHHHH-HTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHH
T ss_pred             CCCHHHHHHHH-HHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHH
Confidence            78999999999 88999999986557777666667766654332  3333357788999999999999999999988999


Q ss_pred             HHHHHHhhh
Q 027311          216 IEVVLECLC  224 (225)
Q Consensus       216 l~~~l~~ll  224 (225)
                      +++.|+++|
T Consensus       175 l~~~i~~lL  183 (183)
T 2obi_A          175 IEKDLPHYF  183 (183)
T ss_dssp             HHTTSGGGC
T ss_pred             HHHHHHHhC
Confidence            999988875

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=100.00  E-value=4.9e-34  Score=223.63  Aligned_cols=162  Identities=39%  Similarity=0.643  Sum_probs=138.5

Q ss_pred             CCCceecCeEEeCCC-CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           64 QSKTSVHDFSVKDAK-GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~-G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ..++.+|+|++++++ |+.+++++++||++||+||++|||+|+.++|.|++++++|++++++|++|++|+++.+++++.+
T Consensus        21 ~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~  100 (208)
T 2f8a_A           21 QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNE  100 (208)
T ss_dssp             -CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHH
T ss_pred             hhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHH
Confidence            567889999999999 9999999999999999999999999999999999999999998999999999977667778899


Q ss_pred             HHHHHHH-----hhcCCCcceeeeecCCCCCchhhhhhccccCCCC-------C------------CCccccceeEEEEC
Q 027311          143 QIQEFAC-----TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL-------F------------GDSIKWNFSKFLVD  198 (225)
Q Consensus       143 ~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-------~------------~~~v~~~P~~~lid  198 (225)
                      ++++|+.     .+++++||++.+.|..+.....+|.++....++.       .            +.++.++|++||||
T Consensus       101 ~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID  180 (208)
T 2f8a_A          101 EILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVG  180 (208)
T ss_dssp             HHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEEC
T ss_pred             HHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEc
Confidence            9999994     2899999999766777776656676654322110       0            12578889999999


Q ss_pred             CCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          199 KEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       199 ~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      ++|+|++++.|..+++++++.|+++|+
T Consensus       181 ~~G~i~~~~~g~~~~~~l~~~I~~ll~  207 (208)
T 2f8a_A          181 PDGVPLRRYSRRFQTIDIEPDIEALLS  207 (208)
T ss_dssp             TTSCEEEEECTTSCGGGGHHHHHHHHC
T ss_pred             CCCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence            999999999999999999999999874

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=100.00  E-value=9.1e-35  Score=224.11  Aligned_cols=162  Identities=48%  Similarity=0.801  Sum_probs=141.9

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      .+..+.++|+|+++|.+|+.+++++++||++||+||++||++|+.++|.|++++++|++++++|++|++|.++.+++++.
T Consensus        19 ~~~~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~   98 (187)
T 3dwv_A           19 KMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNE   98 (187)
T ss_dssp             -CTTCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBT
T ss_pred             hhcCCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999998777888899


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccce---eEEEECCCCcEEEEcCCCCChhhHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNF---SKFLVDKEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P---~~~lid~~G~I~~~~~g~~~~~~l~~  218 (225)
                      +++++|+.++++++||++.+.|..+.....+|.++....++..  ++..+|   ++||||++|+|++++.|..+++++++
T Consensus        99 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~--~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~  176 (187)
T 3dwv_A           99 EEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGIL--ATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEE  176 (187)
T ss_dssp             THHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSB--SSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHH
T ss_pred             HHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCcc--CCCccccceeEEEECCCCCEEEEECCCCCHHHHHH
Confidence            9999998446799999997778888877778877665443333  556677   99999999999999999999999999


Q ss_pred             HHHhhhC
Q 027311          219 VLECLCC  225 (225)
Q Consensus       219 ~l~~ll~  225 (225)
                      .|+++|+
T Consensus       177 ~i~~lL~  183 (187)
T 3dwv_A          177 KLIPLLG  183 (187)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            9999874

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=223.81  Aligned_cols=160  Identities=38%  Similarity=0.642  Sum_probs=138.2

Q ss_pred             CCCceecCeEEeCCC-CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           64 QSKTSVHDFSVKDAK-GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~-G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ..+..+|+|+++|++ |+.++|++++||++||+||||||++|+ ++|.|++++++|+++|++||+|++|+++.+++++.+
T Consensus        30 ~~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~  108 (215)
T 2i3y_A           30 DEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNK  108 (215)
T ss_dssp             CCCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHH
T ss_pred             cccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHH
Confidence            566789999999999 999999999999999999999999999 999999999999999999999999988778888999


Q ss_pred             HHHHHHHh------hcCCCcceeeeecCCCCCchhhhhhccccCCC---CC------------CCccccceeEEEECCCC
Q 027311          143 QIQEFACT------RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG---LF------------GDSIKWNFSKFLVDKEG  201 (225)
Q Consensus       143 ~~~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~------------~~~v~~~P~~~lid~~G  201 (225)
                      ++++|+ +      +++++||++.+.|..+.....+|+++....++   ..            +..+.+.|++||||++|
T Consensus       109 ~i~~f~-~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G  187 (215)
T 2i3y_A          109 EILPGL-KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDG  187 (215)
T ss_dssp             HHHHHH-HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTS
T ss_pred             HHHHHH-HhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCC
Confidence            999999 5      89999999977777777666677765432211   11            12466779999999999


Q ss_pred             cEEEEcCCCCChhhHHHHHHhhhC
Q 027311          202 NVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       202 ~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      +|++++.|..+++++++.|++||+
T Consensus       188 ~vv~~~~g~~~~~~l~~~I~~ll~  211 (215)
T 2i3y_A          188 IPVMRWSHRATVSSVKTDILAYLK  211 (215)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHGG
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHH
Confidence            999999998889999999999873

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=100.00  E-value=6.9e-34  Score=215.02  Aligned_cols=164  Identities=70%  Similarity=1.188  Sum_probs=135.1

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ..++|+.+|+|++++.+|+.+++++++||++||+||++||++|+.++|.|+++++++++++++|++|++|.++.+++++.
T Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~   84 (170)
T 2p5q_A            5 TSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTN   84 (170)
T ss_dssp             -----CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCH
T ss_pred             cCCCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCH
Confidence            34689999999999999999999999999999999999999999999999999999998899999999997777777899


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +++++|+.++++++||++.+.|.++.....+|+.+.....+..+.++.+.|++||||++|+|++++.|..+++++++.|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~  164 (170)
T 2p5q_A           85 DQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIK  164 (170)
T ss_dssp             HHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHH
Confidence            99999994378999999865677777666667654332211111244444499999999999999999999999999999


Q ss_pred             hhhC
Q 027311          222 CLCC  225 (225)
Q Consensus       222 ~ll~  225 (225)
                      ++|+
T Consensus       165 ~ll~  168 (170)
T 2p5q_A          165 QLLE  168 (170)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9874

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.8e-34  Score=218.07  Aligned_cols=156  Identities=37%  Similarity=0.629  Sum_probs=131.3

Q ss_pred             CcccccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           58 DHTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        58 ~~~~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      ......++|+++|+|++++.+|+.+++++++||++||+||++|||+|+.++|.|++++++|++++++|++|++|.++.++
T Consensus        18 ~~~~~~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e   97 (181)
T 2p31_A           18 LYFQSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQE   97 (181)
T ss_dssp             ---------CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred             cccCcCCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCC
Confidence            33455689999999999999999999999999999999999999999999999999999999989999999999776677


Q ss_pred             CCCHHHHHHHHHhh-cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccce-------eEEEECCCCcEEEEcCC
Q 027311          138 PGDNEQIQEFACTR-FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNF-------SKFLVDKEGNVVERYAP  209 (225)
Q Consensus       138 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P-------~~~lid~~G~I~~~~~g  209 (225)
                      +++.+++++|+ ++ ++++||++.+.|.++......|++           .+.++|       ++||||++|+|++++.|
T Consensus        98 ~~~~~~~~~~~-~~~~~~~~p~~~~~d~~g~~~~~~~~~-----------~~~~~P~~~~~~~~~~lid~~G~i~~~~~g  165 (181)
T 2p31_A           98 PDSNKEIESFA-RRTYSVSFPMFSKIAVTGTGAHPAFKY-----------LAQTSGKEPTWNFWKYLVAPDGKVVGAWDP  165 (181)
T ss_dssp             CSCHHHHHHHH-HHHHCCCSCBBCCCCCSSTTSCHHHHH-----------HHHHHSCCCCSTTCEEEECTTSCEEEEECT
T ss_pred             CCCHHHHHHHH-HhhcCCCceeEeecccCCccchhhhhh-----------hhhcCCCccccceeEEEEcCCCCEEEEeCC
Confidence            77899999999 55 899999986666666655555543           455567       99999999999999999


Q ss_pred             CCChhhHHHHHHhhhC
Q 027311          210 TTSPLSIEVVLECLCC  225 (225)
Q Consensus       210 ~~~~~~l~~~l~~ll~  225 (225)
                      ..+++++++.|+++|+
T Consensus       166 ~~~~~~l~~~i~~ll~  181 (181)
T 2p31_A          166 TVSVEEVRPQITALVR  181 (181)
T ss_dssp             TSCHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9899999999999885

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=219.42  Aligned_cols=159  Identities=36%  Similarity=0.612  Sum_probs=134.8

Q ss_pred             CCCceecCeEEeCCC-CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           64 QSKTSVHDFSVKDAK-GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~-G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      .....+|+|+++|++ |+.++|++++||++||+||+|||++| .++|.|++++++|+++|++||+|++|+++.+++++.+
T Consensus        12 ~~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~   90 (207)
T 2r37_A           12 GISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENS   90 (207)
T ss_dssp             ---CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHH
T ss_pred             cccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHH
Confidence            345689999999999 99999999999999999999999999 7999999999999999999999999987777888899


Q ss_pred             HHHHHHHh------hcCCCcceeeeecCCCCCchhhhhhccccCCC---CC------------CCccccceeEEEECCCC
Q 027311          143 QIQEFACT------RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG---LF------------GDSIKWNFSKFLVDKEG  201 (225)
Q Consensus       143 ~~~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~------------~~~v~~~P~~~lid~~G  201 (225)
                      ++++|+ +      +++++||++.+.|..+.....+|+++....++   ..            +..+.+.|++||||++|
T Consensus        91 ~i~~f~-~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G  169 (207)
T 2r37_A           91 EILPTL-KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG  169 (207)
T ss_dssp             HHHHHH-HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTS
T ss_pred             HHHHHH-HhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCC
Confidence            999999 6      89999999976676777666677765432211   11            12466779999999999


Q ss_pred             cEEEEcCCCCChhhHHHHHHhhh
Q 027311          202 NVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       202 ~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      +|++++.|..+++++++.|+++|
T Consensus       170 ~i~~~~~g~~~~~~l~~~I~~ll  192 (207)
T 2r37_A          170 IPIMRWHHRTTVSNVKMDILSYM  192 (207)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHH
Confidence            99999999888999999999887

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=100.00  E-value=2.5e-33  Score=214.69  Aligned_cols=153  Identities=39%  Similarity=0.681  Sum_probs=133.7

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ..+|..+|+|+++|.+|+.+++++++||++||+||++|||+|+.++|.|++++++|++++++|++|++|.++..++++.+
T Consensus        12 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~   91 (180)
T 3kij_A           12 KPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSK   91 (180)
T ss_dssp             CCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHH
T ss_pred             cCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999988878888999


Q ss_pred             HHHHHHHhh-cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCcccccee----EEEECCCCcEEEEcCCCCChhhHH
Q 027311          143 QIQEFACTR-FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFS----KFLVDKEGNVVERYAPTTSPLSIE  217 (225)
Q Consensus       143 ~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~----~~lid~~G~I~~~~~g~~~~~~l~  217 (225)
                      ++++|+ ++ ++++||++.+.|..+......|.++...        ..++|+    +||||++|+|++++.|..++++++
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--------~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~  162 (180)
T 3kij_A           92 EVESFA-RKNYGVTFPIFHKIKILGSEGEPAFRFLVDS--------SKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIR  162 (180)
T ss_dssp             HHHHHH-HHHHCCCSCBBCCCCCSSTTCCHHHHHHHHH--------HTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTH
T ss_pred             HHHHHH-HHhcCCCCceeeeeeccCccccHHHHHHHhc--------CCCCccccceEEEECCCCCEEEEECCCCCHHHHH
Confidence            999999 66 9999999876666666655566554321        223566    999999999999999999998888


Q ss_pred             HHHHhhh
Q 027311          218 VVLECLC  224 (225)
Q Consensus       218 ~~l~~ll  224 (225)
                      +.|+++|
T Consensus       163 ~~i~~lL  169 (180)
T 3kij_A          163 PDIAALV  169 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888776

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=100.00  E-value=2.1e-32  Score=211.34  Aligned_cols=158  Identities=49%  Similarity=0.831  Sum_probs=135.4

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ..+.|+.+|+|+++|.+|+.+++++++||++||+||++||++|+.+++.|++++++|++++++|++|++|.++.+++++.
T Consensus        21 ~~~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  100 (190)
T 2vup_A           21 HMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNE  100 (190)
T ss_dssp             ---CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCH
T ss_pred             cCCCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCH
Confidence            35789999999999999999999999999999999999999999999999999999999899999999997777778889


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccce------eEEEECCCCcEEEEcCCCCChhh
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNF------SKFLVDKEGNVVERYAPTTSPLS  215 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P------~~~lid~~G~I~~~~~g~~~~~~  215 (225)
                      +++++|+.++++++||++.+.|..+.....+|+.+....     +++.++|      ++||||++|+|++++.|..++++
T Consensus       101 ~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~-----~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~  175 (190)
T 2vup_A          101 EEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTK-----PGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKD  175 (190)
T ss_dssp             HHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHS-----CCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHH
T ss_pred             HHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhc-----CCcCCCccccccceEEEECCCCcEEEEECCCCCHHH
Confidence            999999845779999998666777776665666543322     1455556      99999999999999999999999


Q ss_pred             HHHHHHhhh
Q 027311          216 IEVVLECLC  224 (225)
Q Consensus       216 l~~~l~~ll  224 (225)
                      +.+.|+++|
T Consensus       176 l~~~i~~ll  184 (190)
T 2vup_A          176 IEKKLIPLL  184 (190)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999987

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4e-32  Score=206.15  Aligned_cols=155  Identities=46%  Similarity=0.790  Sum_probs=118.5

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI  144 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~  144 (225)
                      .+..+|+|+++|.+|+.+++++++||++||+||++||++|+ ++|.|++++++|++++++|++|++|.++.+++++.+++
T Consensus         8 ~~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~   86 (171)
T 3cmi_A            8 HMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEI   86 (171)
T ss_dssp             --CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC----------
T ss_pred             chhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHH
Confidence            46788999999999999999999999999999999999999 99999999999999899999999986666666788888


Q ss_pred             HHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccce------eEEEECCCCcEEEEcCCCCChhhHHH
Q 027311          145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNF------SKFLVDKEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P------~~~lid~~G~I~~~~~g~~~~~~l~~  218 (225)
                      ++|++++++++||++.+.|..+....+.|+.+....     +++.++|      ++||||++|+|++++.|..+++++++
T Consensus        87 ~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~-----~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~  161 (171)
T 3cmi_A           87 AQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQK-----SGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSE  161 (171)
T ss_dssp             --------CCCSCBBCCCBSSSTTBCHHHHHHHHHS-----CCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHH
T ss_pred             HHHHHhccCCCceEEeeccCCCccchHHHHHHHhcc-----CCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence            988746779999999666666666666665543221     2667778      99999999999999999889999999


Q ss_pred             HHHhhhC
Q 027311          219 VLECLCC  225 (225)
Q Consensus       219 ~l~~ll~  225 (225)
                      .|+++|+
T Consensus       162 ~i~~ll~  168 (171)
T 3cmi_A          162 TIEELLK  168 (171)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999874

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.97  E-value=2.3e-31  Score=198.89  Aligned_cols=144  Identities=17%  Similarity=0.281  Sum_probs=124.8

Q ss_pred             CCceecCeEEeCC--CCCeecCCccCCCEEEEEEcccCCCCChHh-HHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           65 SKTSVHDFSVKDA--KGQDVDLSIYKGKLLLIVNVASQCGLTNSN-YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        65 ~g~~~p~f~l~~~--~G~~~~l~~~~gk~vlv~F~~twC~~C~~~-~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      +|+++|+|++.+.  +|+.+++++++||++||+||++||++|+.+ +|.|++++++|+++++.+++|++| +...+.++.
T Consensus         2 ~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~-~~~~~~~~~   80 (158)
T 3eyt_A            2 NAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTV-FEHHEAMTP   80 (158)
T ss_dssp             CCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC-CSCGGGSCH
T ss_pred             CCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEec-ccccccCCH
Confidence            6899999999994  889999999999999999999999999997 999999999999888999999987 222234588


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCC----CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGD----NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE  217 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~  217 (225)
                      +.+++|+ ++++++||++.  |..+.    ...+.|             ++.++|++||||++|+|++++.|..+.++++
T Consensus        81 ~~~~~~~-~~~~~~~~~~~--d~~~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~  144 (158)
T 3eyt_A           81 ISLKAFL-HEYRIKFPVGV--DQPGDGAMPRTMAAY-------------QMRGTPSLLLIDKAGDLRAHHFGDVSELLLG  144 (158)
T ss_dssp             HHHHHHH-HHTTCCSCEEE--ECCCSSSSCHHHHHT-------------TCCSSSEEEEECTTSEEEEEEESCCCHHHHH
T ss_pred             HHHHHHH-HHcCCCceEEE--cCccchhhHHHHHHc-------------CCCCCCEEEEECCCCCEEEEEeCCCCHHHHH
Confidence            9999999 88999999884  44442    123333             8889999999999999999999999999999


Q ss_pred             HHHHhhhC
Q 027311          218 VVLECLCC  225 (225)
Q Consensus       218 ~~l~~ll~  225 (225)
                      +.|+++|+
T Consensus       145 ~~i~~ll~  152 (158)
T 3eyt_A          145 AEIATLLG  152 (158)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999874

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.97  E-value=1.9e-31  Score=196.46  Aligned_cols=136  Identities=13%  Similarity=0.213  Sum_probs=111.4

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ....+|+.+|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++++++++|++|.       +
T Consensus         5 ~~l~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~-------~   76 (143)
T 4fo5_A            5 EGVNPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDE-------K   76 (143)
T ss_dssp             BSSSTTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCS-------C
T ss_pred             cccCCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccC-------C
Confidence            34689999999999 999999999999999999999999999999999999999999998899999999985       6


Q ss_pred             HHHHHHHHHhhcCCCc-ceeeeecCCC--CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 027311          141 NEQIQEFACTRFKAEF-PIFDKVDVNG--DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE  217 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~  217 (225)
                      .+++++++ ++++++| +.+.  |..+  ....+.|             ++.++|++||||++|+|++++.+   .++++
T Consensus        77 ~~~~~~~~-~~~~~~~~~~~~--d~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~~---~~~l~  137 (143)
T 4fo5_A           77 ESIFTETV-KIDKLDLSTQFH--EGLGKESELYKKY-------------DLRKGFKNFLINDEGVIIAANVT---PEKLT  137 (143)
T ss_dssp             HHHHHHHH-HHHTCCGGGEEE--CTTGGGSHHHHHT-------------TGGGCCCEEEECTTSBEEEESCC---HHHHH
T ss_pred             HHHHHHHH-HHhCCCCceeee--cccccchHHHHHc-------------CCCCCCcEEEECCCCEEEEccCC---HHHHH
Confidence            78899998 7889999 6663  3332  2233333             88899999999999999999765   77888


Q ss_pred             HHHHhh
Q 027311          218 VVLECL  223 (225)
Q Consensus       218 ~~l~~l  223 (225)
                      +.|+++
T Consensus       138 ~~l~~i  143 (143)
T 4fo5_A          138 EILKAI  143 (143)
T ss_dssp             HHHTC-
T ss_pred             HHHHhC
Confidence            877654

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.97  E-value=1.6e-31  Score=200.46  Aligned_cols=148  Identities=21%  Similarity=0.273  Sum_probs=113.9

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      .+++|+++|+|+++|.+|+.++|++++||++||+|| ++|||+|+.++|.|++++++++++++++++||.|        +
T Consensus         3 ~l~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d--------~   74 (157)
T 4g2e_A            3 MVEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVD--------P   74 (157)
T ss_dssp             CCCTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESS--------C
T ss_pred             cCCCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeeccc--------c
Confidence            358999999999999999999999999999999999 9999999999999999999999999999999988        7


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC-----CCChhh
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP-----TTSPLS  215 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g-----~~~~~~  215 (225)
                      .+.+++|+ ++++++||++.  |.++. ..+.|+..... ++..+ .....|++||||++|+|++++.+     +.+.++
T Consensus        75 ~~~~~~~~-~~~~~~~p~l~--D~~~~-v~~~ygv~~~~-~~~~~-~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~e  148 (157)
T 4g2e_A           75 PFSNKAFK-EHNKLNFTILS--DYNRE-VVKKYNVAWEF-PALPG-YVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDE  148 (157)
T ss_dssp             HHHHHHHH-HHTTCCSEEEE--CTTSH-HHHHTTCEEEC-TTSTT-CEEECEEEEEECTTSBEEEEEEESSTTCCCCHHH
T ss_pred             hhHHHHHH-HHcCCcEEEEE--cCCcH-HHHHcCCcccc-ccCCC-cceeeeeEEEECCCCEEEEEEECCCCCCCCCHHH
Confidence            88899998 88899999984  54443 44455433221 11222 23457999999999999988654     334567


Q ss_pred             HHHHHHhh
Q 027311          216 IEVVLECL  223 (225)
Q Consensus       216 l~~~l~~l  223 (225)
                      +.+.|++|
T Consensus       149 il~~l~~L  156 (157)
T 4g2e_A          149 IEKVVKSL  156 (157)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            87777765

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1.3e-30  Score=193.51  Aligned_cols=138  Identities=24%  Similarity=0.301  Sum_probs=121.0

Q ss_pred             ccCCCceecCeEEeCCCCCeecCC--ccCCCEEEEEEcccCCCC--ChHhHHHHHHHHHHH-hcCCeEEEEEecCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLS--IYKGKLLLIVNVASQCGL--TNSNYTELSQLYDKY-KNQGLEILAFPCNQFGAQ  136 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~--~~~gk~vlv~F~~twC~~--C~~~~~~l~~l~~~~-~~~~~~iv~Is~d~~~~~  136 (225)
                      .+.+|+++|+|++++.+|+.++++  +++||++||+||++||++  |+.++|.|++++++| +++++++++|++|.    
T Consensus         4 ~l~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~----   79 (150)
T 3fw2_A            4 KSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDV----   79 (150)
T ss_dssp             TTSTTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCS----
T ss_pred             cccCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCC----
Confidence            457999999999999999999999  999999999999999999  999999999999999 88889999999985    


Q ss_pred             CCCCHHHHHHHHHhhcCCCcceeeeecCC--CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChh
Q 027311          137 EPGDNEQIQEFACTRFKAEFPIFDKVDVN--GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL  214 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~  214 (225)
                         +.+.+++|+ ++++++|+++.  |..  .....+.|             ++.++|++||||++|+|++++.   +.+
T Consensus        80 ---~~~~~~~~~-~~~~~~~~~~~--d~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~---~~~  137 (150)
T 3fw2_A           80 ---DKQQWKDAI-KRDTLDWEQVC--DFGGLNSEVAKQY-------------SIYKIPANILLSSDGKILAKNL---RGE  137 (150)
T ss_dssp             ---CHHHHHHHH-HHTTCCSEEEC--CSCGGGCHHHHHT-------------TCCSSSEEEEECTTSBEEEESC---CHH
T ss_pred             ---CHHHHHHHH-HHhCCCceEEE--cCcccchHHHHHc-------------CCCccCeEEEECCCCEEEEccC---CHH
Confidence               678999998 88899999984  432  22333333             8889999999999999999985   588


Q ss_pred             hHHHHHHhhhC
Q 027311          215 SIEVVLECLCC  225 (225)
Q Consensus       215 ~l~~~l~~ll~  225 (225)
                      ++++.|+++++
T Consensus       138 ~l~~~l~~ll~  148 (150)
T 3fw2_A          138 ELKKKIENIVE  148 (150)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            89999998873

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.97  E-value=8.3e-31  Score=196.11  Aligned_cols=150  Identities=12%  Similarity=0.240  Sum_probs=126.3

Q ss_pred             CCCceecCeEEeC-CCCCeecCCccCCCEEEEEEcccCCCCChHh-HHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           64 QSKTSVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSN-YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        64 ~~g~~~p~f~l~~-~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~-~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      -.|.++|+|++.+ .+|+.+++++++||++||+||++||++|+.+ +|.|++++++|+++++.+++|++| +...+.++.
T Consensus         4 ~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~-~~~~~~~~~   82 (160)
T 3lor_A            4 LDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSV-FEHHDVMTP   82 (160)
T ss_dssp             CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC-CSCGGGSCH
T ss_pred             cCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEecc-ccccccCCH
Confidence            3689999999999 8999999999999999999999999999996 999999999999889999999986 333334589


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +.+++|+ ++++++||++.+.+........+.+.+          ++.++|++||||++|+|++++.|..+.+++++.|+
T Consensus        83 ~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~----------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~  151 (160)
T 3lor_A           83 EALKVFI-DEFGIKFPVAVDMPREGQRIPSTMKKY----------RLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLG  151 (160)
T ss_dssp             HHHHHHH-HHTTCCSCEEEECCCTTCSSCHHHHHT----------TCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCCcEEECCccccchhhhHHHhc----------ccCccceEEEECCCCcEEEEecCcCCHHHHHHHHH
Confidence            9999999 889999998853332222211122221          88899999999999999999999999999999999


Q ss_pred             hhhC
Q 027311          222 CLCC  225 (225)
Q Consensus       222 ~ll~  225 (225)
                      ++|+
T Consensus       152 ~ll~  155 (160)
T 3lor_A          152 SLLS  155 (160)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9874

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.97  E-value=1.6e-30  Score=191.00  Aligned_cols=135  Identities=17%  Similarity=0.215  Sum_probs=116.6

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHH---HHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ---LYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~---l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ++|+++|+|++++.+|+.+++++++||++||+||++||++|+.++|.+.+   ++++++++++++++|++|.       +
T Consensus         2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~-------~   74 (142)
T 3ewl_A            2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDE-------N   74 (142)
T ss_dssp             CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSS-------C
T ss_pred             CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecC-------C
Confidence            58999999999999999999999999999999999999999999999998   9999998899999999985       7


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCc-hhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNA-APLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      .+.+++|+ ++++.+|+++  .|..+... .+.|             ++.++|++||||++|+|+++   ..+.+++++.
T Consensus        75 ~~~~~~~~-~~~~~~~~~~--~d~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~---~~~~~~l~~~  135 (142)
T 3ewl_A           75 REEWATKA-VYMPQGWIVG--WNKAGDIRTRQLY-------------DIRATPTIYLLDGRKRVILK---DTSMEQLIDY  135 (142)
T ss_dssp             HHHHHHHH-TTSCTTCEEE--ECTTCHHHHTTCS-------------CCCSSSEEEEECTTCBEEEC---SCCHHHHHHH
T ss_pred             HHHHHHHH-HHcCCCccee--eCCccchhhHHHc-------------CCCCCCeEEEECCCCCEEec---CCCHHHHHHH
Confidence            88899998 8899999988  45443321 1123             88999999999999999884   3568899999


Q ss_pred             HHhhh
Q 027311          220 LECLC  224 (225)
Q Consensus       220 l~~ll  224 (225)
                      |+++.
T Consensus       136 l~~~~  140 (142)
T 3ewl_A          136 LATQA  140 (142)
T ss_dssp             HHC--
T ss_pred             HHHHc
Confidence            98775

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.97  E-value=7.2e-30  Score=193.86  Aligned_cols=158  Identities=15%  Similarity=0.251  Sum_probs=122.3

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+|.++|+|+++|++|+.+++++++||++||+||+|||| +|..+++.|.+++++++++  ++++|+||+|    ++.|
T Consensus         6 ~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD----p~~D   81 (170)
T 4hde_A            6 KPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD----PDLD   81 (170)
T ss_dssp             SCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC----TTTC
T ss_pred             cCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC----cccc
Confidence            3578999999999999999999999999999999999998 8999999999999999765  4899999998    5778


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecC-CCCCchhhhhh-ccccCCCCCCCccccceeEEEECCCCcEEEEcCCC--CChhh
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDV-NGDNAAPLYKH-LKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT--TSPLS  215 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~-~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~--~~~~~  215 (225)
                      +++.+++|+ ++++.+++.+..... ..+.....+.. .........++.+.|.|++||||++|+|+.++.|.  .+.++
T Consensus        82 tp~~l~~y~-~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~  160 (170)
T 4hde_A           82 KPENLKAFI-QKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYED  160 (170)
T ss_dssp             CHHHHHHHH-TTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHH
T ss_pred             cHHHHHHHH-HHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHH
Confidence            999999999 888887765432211 11112222211 11111122234788899999999999999988764  34578


Q ss_pred             HHHHHHhhhC
Q 027311          216 IEVVLECLCC  225 (225)
Q Consensus       216 l~~~l~~ll~  225 (225)
                      +.+.|++|++
T Consensus       161 l~~~ik~Lle  170 (170)
T 4hde_A          161 IIRDMKRLAE  170 (170)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999874

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.97  E-value=4.3e-30  Score=188.92  Aligned_cols=133  Identities=16%  Similarity=0.178  Sum_probs=114.6

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHH---HHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ---LYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~---l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+|+++|+|++++.+|+.+++++++||++||+||++||++|+.++|.|++   ++++++++++++++|+.|.       
T Consensus         5 ~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~-------   77 (142)
T 3eur_A            5 NRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDE-------   77 (142)
T ss_dssp             TCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSS-------
T ss_pred             hcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCC-------
Confidence            478999999999999999999999999999999999999999999999999   9999998899999999985       


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCC-CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGD-NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~  218 (225)
                      +.+.+++++ ++++.+|+..  .|..+. .....|             ++.++|++||||++|+|+++..+   .+++++
T Consensus        78 ~~~~~~~~~-~~~~~~~~~~--~d~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~~---~~~l~~  138 (142)
T 3eur_A           78 ELDEWKKHR-NDFAKEWTNG--YDKELVIKNKNLY-------------DLRAIPTLYLLDKNKTVLLKDAT---LQKVEQ  138 (142)
T ss_dssp             CHHHHHHHG-GGSCTTSEEE--ECTTCHHHHTTCS-------------CCTTCSEEEEECTTCBEEEEEEC---HHHHHH
T ss_pred             CHHHHHHHH-Hhcccccccc--cCccchhhhhhhc-------------CCCcCCeEEEECCCCcEEecCCC---HHHHHH
Confidence            778888888 7888888876  443332 012222             88899999999999999999876   677877


Q ss_pred             HHH
Q 027311          219 VLE  221 (225)
Q Consensus       219 ~l~  221 (225)
                      .|+
T Consensus       139 ~l~  141 (142)
T 3eur_A          139 YLA  141 (142)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            775

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.97  E-value=6.7e-30  Score=190.01  Aligned_cols=139  Identities=19%  Similarity=0.214  Sum_probs=118.6

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ..+|+++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++++++|++|.       +.+
T Consensus         3 l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~-------~~~   75 (152)
T 2lrn_A            3 LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR-------REE   75 (152)
T ss_dssp             SCTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCS-------CHH
T ss_pred             ccCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccC-------CHH
Confidence            4789999999999999999999999999999999999999999999999999999998899999999985       778


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                      ++++++ ++++.+|+++.+.........+.|             ++.++|+++|||++|+|++++.   +.+++++.|++
T Consensus        76 ~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~  138 (152)
T 2lrn_A           76 DWKKAI-EEDKSYWNQVLLQKDDVKDVLESY-------------CIVGFPHIILVDPEGKIVAKEL---RGDDLYNTVEK  138 (152)
T ss_dssp             HHHHHH-HHHTCCSEEEEECHHHHHHHHHHT-------------TCCSSCEEEEECTTSEEEEECC---CTTHHHHHHHH
T ss_pred             HHHHHH-HHhCCCCeEEecccchhHHHHHHh-------------CCCcCCeEEEECCCCeEEEeeC---CHHHHHHHHHH
Confidence            899998 778999998843210012222233             8888999999999999999974   36789999988


Q ss_pred             hhC
Q 027311          223 LCC  225 (225)
Q Consensus       223 ll~  225 (225)
                      +++
T Consensus       139 l~~  141 (152)
T 2lrn_A          139 FVN  141 (152)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            863

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.97  E-value=1.1e-29  Score=192.74  Aligned_cols=157  Identities=18%  Similarity=0.315  Sum_probs=124.0

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQE  137 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~  137 (225)
                      ....+|+.+|+|++++.+|+.+++++++||++||+||++||+ +|+.+++.|+++++++++++  ++|++|++|.    +
T Consensus         5 ~~l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~----~   80 (174)
T 1xzo_A            5 IKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP----E   80 (174)
T ss_dssp             CCSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT----T
T ss_pred             CcCccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC----C
Confidence            345799999999999999999999999999999999999999 99999999999999999876  9999999982    4


Q ss_pred             CCCHHHHHHHHHhhcCCCc---ceeeeecCCCCCchhhhhh--cccc-CCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          138 PGDNEQIQEFACTRFKAEF---PIFDKVDVNGDNAAPLYKH--LKSS-KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~--~~~~-~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                      .++.+.+++|+ ++++++|   +++  .|.+... .+.|..  +... .....++++.++|++||||++|+|++++.|..
T Consensus        81 ~d~~~~~~~~~-~~~~~~~~~~~~l--~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~  156 (174)
T 1xzo_A           81 NDKPKQLKKFA-ANYPLSFDNWDFL--TGYSQSE-IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVE  156 (174)
T ss_dssp             TCCHHHHHHHH-TTSCCCGGGEEEE--BCSCHHH-HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSS
T ss_pred             CCCHHHHHHHH-HHcCCCCcceEEE--eCCCHHH-HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCC
Confidence            45889999998 8889999   554  2322221 122221  0000 00111236788999999999999999998876


Q ss_pred             --ChhhHHHHHHhhhC
Q 027311          212 --SPLSIEVVLECLCC  225 (225)
Q Consensus       212 --~~~~l~~~l~~ll~  225 (225)
                        +.+++.+.|++|++
T Consensus       157 ~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          157 NTPYDDIISDVKSAST  172 (174)
T ss_dssp             SCCHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence              46889999999874

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.97  E-value=2.2e-29  Score=185.63  Aligned_cols=138  Identities=21%  Similarity=0.267  Sum_probs=120.3

Q ss_pred             ccCCCceecCeEEeCCCCCeecCC--ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHH-hcCCeEEEEEecCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLS--IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY-KNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~--~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~-~~~~~~iv~Is~d~~~~~~~  138 (225)
                      ...+|+++|+|++.+.+|+.++++  +++||++||+||++||++|+.+++.++++++++ +++++.+++|++|.      
T Consensus         4 ~~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~------   77 (148)
T 3fkf_A            4 KVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDI------   77 (148)
T ss_dssp             -CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCS------
T ss_pred             cccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCC------
Confidence            457999999999999999999999  999999999999999999999999999999999 88889999999985      


Q ss_pred             CCHHHHHHHHHhhcCCCcceeeeecCC--CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhH
Q 027311          139 GDNEQIQEFACTRFKAEFPIFDKVDVN--GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSI  216 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l  216 (225)
                       +.+.+++++ ++++++|+++.  |..  .......|             ++.++|+++|+|++|+|++++.   +.+++
T Consensus        78 -~~~~~~~~~-~~~~~~~~~~~--d~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~---~~~~l  137 (148)
T 3fkf_A           78 -DREAWETAI-KKDTLSWDQVC--DFTGLSSETAKQY-------------AILTLPTNILLSPTGKILARDI---QGEAL  137 (148)
T ss_dssp             -CHHHHHHHH-HHTTCCSEEEC--CSCGGGCHHHHHT-------------TCCSSSEEEEECTTSBEEEESC---CHHHH
T ss_pred             -CHHHHHHHH-HHcCCCceEEE--ccCCcchHHHHhc-------------CCCCcCEEEEECCCCeEEEecC---CHHHH
Confidence             678999998 88899999884  332  22233333             8889999999999999999976   68899


Q ss_pred             HHHHHhhhC
Q 027311          217 EVVLECLCC  225 (225)
Q Consensus       217 ~~~l~~ll~  225 (225)
                      ++.|+++|+
T Consensus       138 ~~~l~~ll~  146 (148)
T 3fkf_A          138 TGKLKELLK  146 (148)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHc
Confidence            999999874

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.96  E-value=1.3e-29  Score=188.09  Aligned_cols=138  Identities=21%  Similarity=0.390  Sum_probs=122.5

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      ++|+.+|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.       +.+.
T Consensus         1 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~-------~~~~   73 (151)
T 2f9s_A            1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGE-------SKIA   73 (151)
T ss_dssp             -CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESC-------CHHH
T ss_pred             CCCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------CHHH
Confidence            368999999999999999999999999999999999999999999999999999998889999999985       6788


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      +++|+ ++++++|+++.  |.... ..+.|             ++.++|+++|||++|++++++.|..+.+++.+.|+++
T Consensus        74 ~~~~~-~~~~~~~~~~~--d~~~~-~~~~~-------------~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~l  136 (151)
T 2f9s_A           74 VHNFM-KSYGVNFPVVL--DTDRQ-VLDAY-------------DVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  136 (151)
T ss_dssp             HHHHH-HHHTCCSCEEE--ETTSH-HHHHT-------------TCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHH-HHcCCCceEEE--CCchH-HHHhc-------------CCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHH
Confidence            99998 78899999884  43322 33333             8889999999999999999999998999999999998


Q ss_pred             hC
Q 027311          224 CC  225 (225)
Q Consensus       224 l~  225 (225)
                      ++
T Consensus       137 l~  138 (151)
T 2f9s_A          137 KP  138 (151)
T ss_dssp             SC
T ss_pred             Hh
Confidence            74

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.96  E-value=9.2e-30  Score=200.69  Aligned_cols=148  Identities=20%  Similarity=0.286  Sum_probs=126.3

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCC-EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+++|+++|+|++++.+|+.+++++++|| ++||+||++||++|+.+++.|++++++|++++++|++|++|+....+++
T Consensus        30 ~~l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d  109 (218)
T 3u5r_E           30 NSITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEE  109 (218)
T ss_dssp             CCCCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGG
T ss_pred             CcCCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccC
Confidence            456899999999999999999999999999 5999999999999999999999999999999999999999864444446


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC---------CC
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA---------PT  210 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~---------g~  210 (225)
                      +.+.+++|+ ++++++||++.  |..+ ...+.|             ++.++|++||||++|+|+++..         +.
T Consensus       110 ~~~~~~~~~-~~~~~~~~~l~--D~~~-~~~~~~-------------~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~  172 (218)
T 3u5r_E          110 TLERVGAEV-KAYGYGFPYLK--DASQ-SVAKAY-------------GAACTPDFFLYDRERRLVYHGQFDDARPGNGKD  172 (218)
T ss_dssp             SHHHHHHHH-HHHTCCSCEEE--CTTC-HHHHHH-------------TCCEESEEEEECTTCBEEEEECSSSCCTTSCCC
T ss_pred             CHHHHHHHH-HHhCCCccEEE--CCcc-HHHHHc-------------CCCCCCeEEEECCCCcEEEeccccccccccccc
Confidence            999999999 78899999984  4333 344445             8888999999999999998743         23


Q ss_pred             CChhhHHHHHHhhhC
Q 027311          211 TSPLSIEVVLECLCC  225 (225)
Q Consensus       211 ~~~~~l~~~l~~ll~  225 (225)
                      .+.+++++.|+++++
T Consensus       173 ~~~~~l~~~i~~ll~  187 (218)
T 3u5r_E          173 VTGADLRAAVDAVLK  187 (218)
T ss_dssp             CCCHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHc
Confidence            456789999999873

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.96  E-value=2.8e-29  Score=192.29  Aligned_cols=143  Identities=13%  Similarity=0.184  Sum_probs=124.2

Q ss_pred             ccCCCceecCeEEeCC--CCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCe------EEEEEecCCC
Q 027311           62 ASQSKTSVHDFSVKDA--KGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL------EILAFPCNQF  133 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~--~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~------~iv~Is~d~~  133 (225)
                      ...+|+++|+|+++++  +|+.+++++++||++||+||++||++|+.+++.|++++++|+++++      ++++|++|. 
T Consensus        30 ~~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~-  108 (183)
T 3lwa_A           30 DEADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD-  108 (183)
T ss_dssp             CGGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC-
T ss_pred             ccccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC-
Confidence            4578999999999999  9999999999999999999999999999999999999999999888      999999873 


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCCh
Q 027311          134 GAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP  213 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~  213 (225)
                           ++.+.+++|+ ++++++||++  .|..+.. ...|+.          +++.++|++||||++|+|++++.|..+.
T Consensus       109 -----~~~~~~~~~~-~~~~~~~~~~--~d~~~~~-~~~~~~----------~~v~~~P~~~lid~~G~i~~~~~g~~~~  169 (183)
T 3lwa_A          109 -----YSRDIAQDFV-TDNGLDYPSI--YDPPFMT-AASLGG----------VPASVIPTTIVLDKQHRPAAVFLREVTS  169 (183)
T ss_dssp             -----CCHHHHHHHH-HHTTCCSCEE--ECTTCGG-GGGTTT----------CCTTCCSEEEEECTTSCEEEEECSCCCH
T ss_pred             -----CCHHHHHHHH-HHcCCCccEE--ECCcchH-HHHhcc----------CCCCCCCeEEEECCCCcEEEEEcCCCCH
Confidence                 2578889998 8889999998  4544433 222311          2688899999999999999999999999


Q ss_pred             hhHHHHHHhhh
Q 027311          214 LSIEVVLECLC  224 (225)
Q Consensus       214 ~~l~~~l~~ll  224 (225)
                      +++.+.|++++
T Consensus       170 ~~l~~~l~~ll  180 (183)
T 3lwa_A          170 KDVLDVALPLV  180 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999987

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.96  E-value=8.6e-31  Score=197.85  Aligned_cols=147  Identities=14%  Similarity=0.241  Sum_probs=119.0

Q ss_pred             cCCCceecCeEEeCCCCCeecCCcc--CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIY--KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~--~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      +++|+++|+|++.|.+|+.++|+++  +||++||+|| ++|||+|+.+++.|++++++|+++|+++++||.|        
T Consensus         5 l~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d--------   76 (164)
T 4gqc_A            5 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVD--------   76 (164)
T ss_dssp             CCTTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESS--------
T ss_pred             ccCCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCC--------
Confidence            4799999999999999999999998  8999999888 9999999999999999999999999999999987        


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-----CChh
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-----TSPL  214 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-----~~~~  214 (225)
                      +.+.+++|. ++++++||++.  |.++. ..+.|+.......+.   .....|++||||++|+|++++.+.     .+.+
T Consensus        77 ~~~~~~~~~-~~~~~~fp~l~--D~~~~-v~~~ygv~~~~~~~~---~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~  149 (164)
T 4gqc_A           77 SPWCLKKFK-DENRLAFNLLS--DYNRE-VIKLYNVYHEDLKGL---KMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYD  149 (164)
T ss_dssp             CHHHHHHHH-HHTTCCSEEEE--CTTSH-HHHHTTCEEEEETTE---EEEECCEEEEECTTSBEEEEEECSCTTCCCCHH
T ss_pred             CHHHHHHHH-HhcCcccceee--cCchH-HHHHcCCcccccccC---cCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHH
Confidence            788999998 88999999984  54443 445565433221111   223568999999999999986543     3456


Q ss_pred             hHHHHHHhhh
Q 027311          215 SIEVVLECLC  224 (225)
Q Consensus       215 ~l~~~l~~ll  224 (225)
                      ++.+.|++|.
T Consensus       150 eil~~l~~l~  159 (164)
T 4gqc_A          150 EVVREANKIA  159 (164)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777777664

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.96  E-value=2.8e-29  Score=188.68  Aligned_cols=124  Identities=18%  Similarity=0.295  Sum_probs=109.6

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCE-EEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKL-LLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~-vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      +.+|+++|+|++++.+|+.+++++++||+ +||+|| ++||++|+.+++.|++++++|+++|+++++|++|        +
T Consensus         2 l~~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d--------~   73 (161)
T 3drn_A            2 VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSD--------D   73 (161)
T ss_dssp             CCTTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESC--------C
T ss_pred             CCCCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCC--------C
Confidence            36899999999999999999999999997 999999 9999999999999999999999999999999997        7


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCcccc----ceeEEEECCCCcEEEEcCCCC
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKW----NFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~----~P~~~lid~~G~I~~~~~g~~  211 (225)
                      .+.+++|+ ++++++|+++.  |.+ ....+.|             ++.+    +|++||||++|+|++++.|..
T Consensus        74 ~~~~~~~~-~~~~~~~~~~~--d~~-~~~~~~~-------------~v~~~~~~~P~~~lid~~G~i~~~~~g~~  131 (161)
T 3drn_A           74 INSHKRFK-EKYKLPFILVS--DPD-KKIRELY-------------GAKGFILPARITFVIDKKGIIRHIYNSQM  131 (161)
T ss_dssp             HHHHHHHH-HHTTCCSEEEE--CTT-SHHHHHT-------------TCCCSSSCCCEEEEECTTSBEEEEEECSS
T ss_pred             HHHHHHHH-HHhCCCceEEE--CCc-HHHHHHc-------------CCCCcCcccceEEEECCCCEEEEEEecCC
Confidence            89999999 88899999984  433 2333444             5556    899999999999999999844

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.96  E-value=2.2e-29  Score=189.33  Aligned_cols=148  Identities=16%  Similarity=0.276  Sum_probs=116.7

Q ss_pred             cCCCceecCeE--EeCCCCCeecCCccCCCEEEEEEcc-cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFS--VKDAKGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~--l~~~~G~~~~l~~~~gk~vlv~F~~-twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      +.+|+++|+|+  +++.+|+++++++++||++||+||+ +||++|+.+++.|++++++|+++|++|++|++|        
T Consensus         7 l~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d--------   78 (163)
T 3gkn_A            7 AVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRD--------   78 (163)
T ss_dssp             CCCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESS--------
T ss_pred             cccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCC--------
Confidence            57999999999  9999999999999999999999997 999999999999999999999999999999998        


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCC-CccccceeEEEECCCCcEEEEcCCCCCh---hh
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSP---LS  215 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~P~~~lid~~G~I~~~~~g~~~~---~~  215 (225)
                      +.+.+++|+ ++++.+||++.  |.++ ...+.|+.......  .| .....+|++||||++|+|++.+.+....   ++
T Consensus        79 ~~~~~~~~~-~~~~~~~~~~~--d~~~-~~~~~~~v~~~~~~--~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~  152 (163)
T 3gkn_A           79 SVKSHDNFC-AKQGFAFPLVS--DGDE-ALCRAFDVIKEKNM--YGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADA  152 (163)
T ss_dssp             CHHHHHHHH-HHHCCSSCEEE--CTTC-HHHHHTTCEEEEEE--TTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHH
T ss_pred             CHHHHHHHH-HHhCCCceEEE--CCcH-HHHHHhCCcccccc--ccccccCcceEEEEECCCCeEEEEEcCCCcccCHHH
Confidence            789999999 78899999984  4433 34444533221100  00 0111289999999999999998664433   45


Q ss_pred             HHHHHHhhh
Q 027311          216 IEVVLECLC  224 (225)
Q Consensus       216 l~~~l~~ll  224 (225)
                      +.+.|++|.
T Consensus       153 il~~l~~l~  161 (163)
T 3gkn_A          153 VLAALKAHA  161 (163)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            556665554

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.96  E-value=5.6e-29  Score=186.93  Aligned_cols=145  Identities=15%  Similarity=0.247  Sum_probs=125.4

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ...+|+++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|+       +.
T Consensus         7 ~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~-------~~   79 (165)
T 3or5_A            7 ADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNE-------QL   79 (165)
T ss_dssp             CCCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSC-------CH
T ss_pred             hhcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------CH
Confidence            35789999999999999999999999999999999999999999999999999999998899999999985       78


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +.+++|+ ++++++|+++.  +..  ...+.|....       ..++.++|++||||++|+|++++.|..+.+++++.|+
T Consensus        80 ~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~~~-------~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  147 (165)
T 3or5_A           80 PNVKNYM-KTQGIIYPVMM--ATP--ELIRAFNGYI-------DGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVK  147 (165)
T ss_dssp             HHHHHHH-HHHTCCSCEEE--CCH--HHHHHHHTTS-------TTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCCceEe--cCH--HHHHHHhhhh-------ccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHH
Confidence            8899998 78899999884  321  3333332211       1167889999999999999999999999999999999


Q ss_pred             hhhC
Q 027311          222 CLCC  225 (225)
Q Consensus       222 ~ll~  225 (225)
                      ++|+
T Consensus       148 ~~l~  151 (165)
T 3or5_A          148 MALG  151 (165)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            9874

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.96  E-value=4.1e-29  Score=184.15  Aligned_cols=140  Identities=16%  Similarity=0.153  Sum_probs=118.9

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ...+|+++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.+++++++++++++.+++|++|.       +.
T Consensus         4 ~~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~-------~~   76 (148)
T 3hcz_A            4 PLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIER-------KD   76 (148)
T ss_dssp             CCCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCS-------SS
T ss_pred             ccCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecC-------CH
Confidence            35799999999999999999999999999999999999999999999999999999998899999999985       66


Q ss_pred             HHHHHHHHhhcCCC-cceeeeecCCCC-CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          142 EQIQEFACTRFKAE-FPIFDKVDVNGD-NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       142 ~~~~~~~~~~~~~~-~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      +++++|+ ++++.+ |+++  .|..+. .....|             ++.++|+++|||++|+|++++.|..+.+++.+.
T Consensus        77 ~~~~~~~-~~~~~~~~~~~--~d~~~~~~~~~~~-------------~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~  140 (148)
T 3hcz_A           77 EEWLKFI-RSKKIGGWLNV--RDSKNHTDFKITY-------------DIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQ  140 (148)
T ss_dssp             HHHHHHH-HHHTCTTSEEE--ECTTCCCCHHHHH-------------CCCSSCEEEEECTTCBEEEESCCGGGHHHHHHH
T ss_pred             HHHHHHH-HHcCCCCceEE--eccccchhHHHhc-------------CcCCCCEEEEECCCCcEEEecCCHHHHHHHHHH
Confidence            7899998 777888 8888  454443 134444             888999999999999999999886555555555


Q ss_pred             HHhhh
Q 027311          220 LECLC  224 (225)
Q Consensus       220 l~~ll  224 (225)
                      +.+++
T Consensus       141 l~~~l  145 (148)
T 3hcz_A          141 YEKSL  145 (148)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.96  E-value=2.7e-29  Score=186.51  Aligned_cols=134  Identities=12%  Similarity=0.182  Sum_probs=112.6

Q ss_pred             eecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHH
Q 027311           68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEF  147 (225)
Q Consensus        68 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~  147 (225)
                      ++|+|.+. .+|+.+++++++||++||+||++||++|+.++|.|++++++++++++.+++|++|        +.+++++|
T Consensus         4 pa~~~~~~-~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d--------~~~~~~~~   74 (151)
T 3raz_A            4 SADELAGW-KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALD--------TSDNIGNF   74 (151)
T ss_dssp             ---CEEET-TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESS--------CHHHHHHH
T ss_pred             Ccchhhcc-cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECC--------ChHHHHHH
Confidence            34445444 7999999999999999999999999999999999999999998888999999997        77899999


Q ss_pred             HHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCc--cccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          148 ACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS--IKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      + ++++++||++.+.  . .....+++.+          +  +.++|++||||++|+|++++.|..+.+++++.|+++.
T Consensus        75 ~-~~~~~~~~~~~~~--~-~~~~~~~~~~----------~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~  139 (151)
T 3raz_A           75 L-KQTPVSYPIWRYT--G-ANSRNFMKTY----------GNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH  139 (151)
T ss_dssp             H-HHSCCSSCEEEEC--C-SCHHHHHHTT----------TCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHH
T ss_pred             H-HHcCCCCceEecC--c-cchHHHHHHh----------CCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            8 8899999998532  2 2222233222          4  8889999999999999999999999999999999886

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.96  E-value=5e-29  Score=185.66  Aligned_cols=134  Identities=25%  Similarity=0.370  Sum_probs=111.1

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ...|+.+|+|++++.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++++++++|++|.       ..+
T Consensus         9 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~-------~~~   81 (152)
T 2lrt_A            9 KIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDG-------DEH   81 (152)
T ss_dssp             SSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSC-------CHH
T ss_pred             hccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccC-------CHH
Confidence            3678999999999999999999999999999999999999999999999999999999899999999985       566


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCC--CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGD--NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                      .++++. .  +.+|+++  .|..+.  .....|             ++.++|++||||++|+|++++.|..+   +++.+
T Consensus        82 ~~~~~~-~--~~~~~~~--~d~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~---~e~~~  140 (152)
T 2lrt_A           82 FWKTSA-D--NLPWVCV--RDANGAYSSYISLY-------------NVTNLPSVFLVNRNNELSARGENIKD---LDEAI  140 (152)
T ss_dssp             HHHHHH-T--TCSSEEE--ECSSGGGCHHHHHH-------------TCCSCSEEEEEETTTEEEEETTTCSC---HHHHH
T ss_pred             HHHHHH-h--CCCceEE--ECCCCcchHHHHHc-------------CcccCceEEEECCCCeEEEecCCHHH---HHHHH
Confidence            777776 3  3678877  454443  233344             78889999999999999999998554   44444


Q ss_pred             Hhhh
Q 027311          221 ECLC  224 (225)
Q Consensus       221 ~~ll  224 (225)
                      .+++
T Consensus       141 ~~~~  144 (152)
T 2lrt_A          141 KKLL  144 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.96  E-value=4.6e-29  Score=187.32  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=116.3

Q ss_pred             eecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCC-ChHhHHHHHHHHHHHhc----CCeEEEEEecCCCCCCCCCCHH
Q 027311           68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKN----QGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        68 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~-C~~~~~~l~~l~~~~~~----~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      .+|+|+++|.+|+.+++++++||++||+||++||++ |+.+++.|+++++++++    .++++++|++|    ++.++.+
T Consensus         2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d----~~~d~~~   77 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID----PERDTKE   77 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESC----TTTCCHH
T ss_pred             CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeC----CCCCCHH
Confidence            479999999999999999999999999999999998 99999999999999986    47999999998    3556789


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhcccc--CCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS--KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                      .+++|+ ++++.+|+++...........+.|+.....  .....++.+.+.|++||||++|+|++++.|..+++++.+.|
T Consensus        78 ~~~~~~-~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l  156 (164)
T 2ggt_A           78 AIANYV-KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASI  156 (164)
T ss_dssp             HHHHHH-HTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHH
T ss_pred             HHHHHH-HHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHH
Confidence            999999 788999988732110001122223110000  00000012233339999999999999999998999999999


Q ss_pred             HhhhC
Q 027311          221 ECLCC  225 (225)
Q Consensus       221 ~~ll~  225 (225)
                      +++|+
T Consensus       157 ~~ll~  161 (164)
T 2ggt_A          157 ATHMR  161 (164)
T ss_dssp             HHHHG
T ss_pred             HHHHH
Confidence            99873

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.96  E-value=2e-28  Score=181.59  Aligned_cols=137  Identities=23%  Similarity=0.362  Sum_probs=120.7

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      +.+|+++|+|++.+ +|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.       +.+
T Consensus         3 l~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~-------~~~   74 (152)
T 3gl3_A            3 LDKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDA-------KTG   74 (152)
T ss_dssp             CCTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCS-------SHH
T ss_pred             CCCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCC-------CHH
Confidence            47899999999999 9999999999999999999999999999999999999999999899999999985       678


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCCh--hhHHHHH
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP--LSIEVVL  220 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~--~~l~~~l  220 (225)
                      .+++|+ ++++.+|+++  .|..+. ..+.|             ++.++|++||||++|+|++++.|..+.  +++++.|
T Consensus        75 ~~~~~~-~~~~~~~~~~--~d~~~~-~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i  137 (152)
T 3gl3_A           75 DAMKFL-AQVPAEFTVA--FDPKGQ-TPRLY-------------GVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQI  137 (152)
T ss_dssp             HHHHHH-HHSCCCSEEE--ECTTCH-HHHHT-------------TCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHH
T ss_pred             HHHHHH-HHcCCCCcee--ECCcch-hHHHc-------------CCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHH
Confidence            888888 8889999988  444432 33334             888999999999999999999886544  6899999


Q ss_pred             Hhhh
Q 027311          221 ECLC  224 (225)
Q Consensus       221 ~~ll  224 (225)
                      ++++
T Consensus       138 ~~~~  141 (152)
T 3gl3_A          138 LAAL  141 (152)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8876

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.96  E-value=8.4e-29  Score=190.41  Aligned_cols=146  Identities=19%  Similarity=0.299  Sum_probs=122.9

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      .+.+|+.+|+|++++.+|+.+++++++||++||+||++||++|+.+++.|++++++|+++ +++++|++|.....+.++.
T Consensus         6 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~   84 (188)
T 2cvb_A            6 ELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAP   84 (188)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSH
T ss_pred             cCCCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCH
Confidence            457899999999999999999999999999999999999999999999999999999988 9999999975333334588


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC--------CCCCh
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA--------PTTSP  213 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~--------g~~~~  213 (225)
                      +.+++|+ ++++++|+++.  |.++. ..+.|             ++.++|++||||++|+|+++..        |..+.
T Consensus        85 ~~~~~~~-~~~~~~~~~~~--d~~~~-~~~~~-------------~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~  147 (188)
T 2cvb_A           85 EKMAAFA-EEHGIFFPYLL--DETQE-VAKAY-------------RALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQS  147 (188)
T ss_dssp             HHHHHHH-HHHTCCSCEEE--CSSSH-HHHHT-------------TCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCC
T ss_pred             HHHHHHH-HHhCCCceEEE--CCcch-HHHHc-------------CCCCCCeEEEECCCCcEEEEEecCCccccccccCH
Confidence            9999998 78899999883  43332 33344             7888999999999999999822        23367


Q ss_pred             hhHHHHHHhhhC
Q 027311          214 LSIEVVLECLCC  225 (225)
Q Consensus       214 ~~l~~~l~~ll~  225 (225)
                      +++++.|+++++
T Consensus       148 ~~l~~~i~~ll~  159 (188)
T 2cvb_A          148 HDLEAAIEALLR  159 (188)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            889999998873

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.96  E-value=3.1e-28  Score=180.59  Aligned_cols=139  Identities=19%  Similarity=0.297  Sum_probs=120.5

Q ss_pred             cCCCceec-CeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           63 SQSKTSVH-DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        63 ~~~g~~~p-~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      +.+|+++| +|++++.+|+.+++++++||++||.||++||++|+.+++.+++++++++++++.+++|++|.       +.
T Consensus         3 l~~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~-------~~   75 (152)
T 2lja_A            3 LRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDK-------NK   75 (152)
T ss_dssp             TTTTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCS-------CH
T ss_pred             cccCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccC-------cH
Confidence            47899999 99999999999999999999999999999999999999999999999998889999999985       66


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +.+++|+ ++++.+++.+. .|. .....+.|             ++.++|+++|||++|+|++++.|..+.+++++.|+
T Consensus        76 ~~~~~~~-~~~~~~~~~~~-~d~-~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  139 (152)
T 2lja_A           76 KAWENMV-TKDQLKGIQLH-MGT-DRTFMDAY-------------LINGIPRFILLDRDGKIISANMTRPSDPKTAEKFN  139 (152)
T ss_dssp             HHHHHHH-HHHTCCSEEEE-CSS-CTHHHHHT-------------TCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHH
T ss_pred             HHHHHHH-HhcCCCCceee-cCc-chhHHHHc-------------CcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHH
Confidence            7888888 67788765442 232 22333333             88899999999999999999999888999999999


Q ss_pred             hhh
Q 027311          222 CLC  224 (225)
Q Consensus       222 ~ll  224 (225)
                      +++
T Consensus       140 ~~~  142 (152)
T 2lja_A          140 ELL  142 (152)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.96  E-value=5.7e-29  Score=190.38  Aligned_cols=152  Identities=14%  Similarity=0.217  Sum_probs=117.4

Q ss_pred             cccccCCCce----ecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCC
Q 027311           59 HTMASQSKTS----VHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQF  133 (225)
Q Consensus        59 ~~~~~~~g~~----~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~  133 (225)
                      ....+++|+.    +|+|+++|.+|+.++|++++||++||+|| ++||++|+.+++.|++++++|+++|++|++|+.|  
T Consensus        17 ~~~~l~~Gd~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D--   94 (179)
T 3ixr_A           17 RGSHMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRD--   94 (179)
T ss_dssp             -CCSSCTTCBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESC--
T ss_pred             CCcccCcCcccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--
Confidence            3445567777    99999999999999999999999999999 9999999999999999999999999999999988  


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCC-CccccceeEEEECCCCcEEEEcCCCCC
Q 027311          134 GAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTS  212 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~P~~~lid~~G~I~~~~~g~~~  212 (225)
                            +.+.+++|+ ++++++||++.  |.++ ...+.|+......  ..| +.....|++||||++|+|++++.+...
T Consensus        95 ------~~~~~~~~~-~~~~~~f~~l~--D~~~-~~~~~~gv~~~~~--~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~  162 (179)
T 3ixr_A           95 ------SVKSHDSFC-AKQGFTFPLVS--DSDA-ILCKAFDVIKEKT--MYGRQVIGIERSTFLIGPTHRIVEAWRQVKV  162 (179)
T ss_dssp             ------CHHHHHHHH-HHHTCCSCEEE--CTTC-HHHHHTTCEEEEC--CC--CEEEECCEEEEECTTSBEEEEECSCCS
T ss_pred             ------CHHHHHHHH-HHcCCceEEEE--CCch-HHHHHcCCccccc--ccCcccCCcceEEEEECCCCEEEEEEcCCCC
Confidence                  788899998 78899999984  4433 3444554332211  001 012247999999999999999865443


Q ss_pred             h---hhHHHHHHhhh
Q 027311          213 P---LSIEVVLECLC  224 (225)
Q Consensus       213 ~---~~l~~~l~~ll  224 (225)
                      .   +++.+.|++|.
T Consensus       163 ~~~~~~il~~l~~l~  177 (179)
T 3ixr_A          163 PGHAEEVLNKLKAHA  177 (179)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            3   45556666554

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.96  E-value=6.9e-29  Score=191.93  Aligned_cols=146  Identities=19%  Similarity=0.264  Sum_probs=125.1

Q ss_pred             ccCCCceecCeEEe-CCCCCeecCCccCCC-EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVK-DAKGQDVDLSIYKGK-LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        62 ~~~~g~~~p~f~l~-~~~G~~~~l~~~~gk-~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ...+|+.+|+|+++ +.+|+.+++++++|| ++||+||++||++|+.+++.|++++++|+++++++++|++|.......+
T Consensus        17 ~~~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d   96 (196)
T 2ywi_A           17 MFPLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPED   96 (196)
T ss_dssp             CCCTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGG
T ss_pred             CCCcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccc
Confidence            45799999999999 999999999999999 5999999999999999999999999999988999999999853333336


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEE---------cCCC
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER---------YAPT  210 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~---------~~g~  210 (225)
                      +.+.+++|+ ++++++|+++.  |..+ ...+.|             ++.++|++||||++|+|+++         +.|.
T Consensus        97 ~~~~~~~~~-~~~~~~~~~~~--d~~~-~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~  159 (196)
T 2ywi_A           97 SPENMKKVA-EELGYPFPYLY--DETQ-EVAKAY-------------DAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIP  159 (196)
T ss_dssp             SHHHHHHHH-HHHTCCSCEEE--CSSC-HHHHHH-------------TCCEESEEEEEETTCBEEEEECSSSCCTTTCCC
T ss_pred             CHHHHHHHH-HHcCCCceEEE--CCch-HHHHHh-------------CCCCCCeEEEEcCCCeEEEccccCcccccccCc
Confidence            889999999 78899999883  4333 233344             78889999999999999998         4576


Q ss_pred             CChhhHHHHHHhhh
Q 027311          211 TSPLSIEVVLECLC  224 (225)
Q Consensus       211 ~~~~~l~~~l~~ll  224 (225)
                      .+.+++++.|++++
T Consensus       160 ~~~~~l~~~i~~ll  173 (196)
T 2ywi_A          160 VTGESIRAALDALL  173 (196)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            78889999999886

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=186.21  Aligned_cols=150  Identities=14%  Similarity=0.209  Sum_probs=117.4

Q ss_pred             cCeEEeCCCCCeecCCccCCCEEEEEEcccCCCC-ChHhHHHHHHHHHHHhc----CCeEEEEEecCCCCCCCCCCHHHH
Q 027311           70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKN----QGLEILAFPCNQFGAQEPGDNEQI  144 (225)
Q Consensus        70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~-C~~~~~~l~~l~~~~~~----~~~~iv~Is~d~~~~~~~~~~~~~  144 (225)
                      |+|+++|.+|+.+++++++||++||+||++||++ |+.+++.|+++++++++    .++++++|++|    ++.++.+.+
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d----~~~d~~~~~   82 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVD----PERDDVEAM   82 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESC----STTCCHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEEC----CCCCCHHHH
Confidence            8999999999999999999999999999999997 99999999999999975    47999999998    345688999


Q ss_pred             HHHHHhhcCCCcceeeeecCCCCCchhhhhhcccc--CCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSS--KGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                      ++|+ ++++.+|+.+.+.........+.|+.....  .....++.+.+.|++||||++|+|++++.|..+.+++.+.|++
T Consensus        83 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  161 (171)
T 2rli_A           83 ARYV-QDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRR  161 (171)
T ss_dssp             HHHH-HTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHH
T ss_pred             HHHH-HHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHH
Confidence            9998 788999998742111111122233211110  0011122455677999999999999999999999999999998


Q ss_pred             hh
Q 027311          223 LC  224 (225)
Q Consensus       223 ll  224 (225)
                      ++
T Consensus       162 ll  163 (171)
T 2rli_A          162 HM  163 (171)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.96  E-value=1.4e-28  Score=187.57  Aligned_cols=137  Identities=15%  Similarity=0.199  Sum_probs=118.8

Q ss_pred             cccCCCceecCeEEeCCCC--CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKG--QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G--~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      ....+|+++|+|++.+.+|  +.+++++++||++||+||++||++|+.++|.|++++++    ++.+++|++|+      
T Consensus        28 ~~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d------   97 (176)
T 3kh7_A           28 PSALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----GVVIYGINYKD------   97 (176)
T ss_dssp             TTTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCEEEEEEESC------
T ss_pred             cccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCC------
Confidence            4468999999999999999  88999999999999999999999999999999999876    69999999875      


Q ss_pred             CCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHH
Q 027311          139 GDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEV  218 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~  218 (225)
                       +.+.+++|+ ++++.+|+.+. .|..+ ...+.|             ++.++|++||||++|+|++++.|..+.+++.+
T Consensus        98 -~~~~~~~~~-~~~~~~~~~~~-~d~~~-~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  160 (176)
T 3kh7_A           98 -DNAAAIKWL-NELHNPYLLSI-SDADG-TLGLDL-------------GVYGAPETYLIDKQGIIRHKIVGVVDQKVWRE  160 (176)
T ss_dssp             -CHHHHHHHH-HHTTCCCSEEE-EETTC-HHHHHH-------------TCCSSCEEEEECTTCBEEEEEESCCCHHHHHH
T ss_pred             -CHHHHHHHH-HHcCCCCceEE-ECCcc-hHHHHc-------------CCCCCCeEEEECCCCeEEEEEcCCCCHHHHHH
Confidence             889999999 78899998532 34333 334444             88889999999999999999999999988888


Q ss_pred             HHHhhh
Q 027311          219 VLECLC  224 (225)
Q Consensus       219 ~l~~ll  224 (225)
                      .|+++|
T Consensus       161 ~l~~~l  166 (176)
T 3kh7_A          161 QLAPLY  166 (176)
T ss_dssp             HTHHHH
T ss_pred             HHHHHH
Confidence            888776

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.96  E-value=2.8e-28  Score=184.99  Aligned_cols=146  Identities=13%  Similarity=0.122  Sum_probs=116.7

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ....+|+++|+|+++|.+|+.+++++++||++||+|| ++|||+|+.+++.|+++++++  +++++++||.|        
T Consensus        19 ~~l~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d--------   88 (171)
T 2yzh_A           19 PELKVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMD--------   88 (171)
T ss_dssp             CCCCTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESS--------
T ss_pred             CcCCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCC--------
Confidence            3457999999999999999999999999999999999 899999999999999999999  67999999998        


Q ss_pred             CHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC-----CCCh
Q 027311          140 DNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP-----TTSP  213 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g-----~~~~  213 (225)
                      +.+.+++|+ +++++ +|+++.  |...... +.|+...... ...  + .++|++||||++|+|++++.|     ..+.
T Consensus        89 ~~~~~~~~~-~~~~~~~~~~l~--D~~~~~~-~~~gv~~~~~-~~~--g-~~~p~~~liD~~G~i~~~~~~~~~~~~~~~  160 (171)
T 2yzh_A           89 LPFAQKRFC-ESFNIQNVTVAS--DFRYRDM-EKYGVLIGEG-ALK--G-ILARAVFIIDKEGKVAYVQLVPEITEEPNY  160 (171)
T ss_dssp             CHHHHHHHH-HHTTCCSSEEEE--CTTTCGG-GGGTCBBCSS-TTT--T-SBCCEEEEECTTSBEEEEEECSBTTSCCCC
T ss_pred             CHHHHHHHH-HHcCCCCeEEee--cCccCcH-HHhCCEeccc-ccC--C-ceeeEEEEEcCCCeEEEEEeCCCcCCCCCH
Confidence            678889998 78899 899984  4122334 5564332110 001  1 147999999999999999864     3456


Q ss_pred             hhHHHHHHhhh
Q 027311          214 LSIEVVLECLC  224 (225)
Q Consensus       214 ~~l~~~l~~ll  224 (225)
                      +++.+.|++||
T Consensus       161 ~~ll~~l~~ll  171 (171)
T 2yzh_A          161 DEVVNKVKELI  171 (171)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhhC
Confidence            78999998875

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.96  E-value=2.1e-28  Score=185.69  Aligned_cols=155  Identities=14%  Similarity=0.145  Sum_probs=119.9

Q ss_pred             CCCceec-CeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhc--CCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVH-DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p-~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~--~~~~iv~Is~d~~~~~~~~  139 (225)
                      .+|+++| +|+++|.+|+.+++++++||++||+||++||+ +|..+++.|+++++++++  .++++++||+|    + .|
T Consensus         2 ~~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d----~-~d   76 (170)
T 3me7_A            2 SLGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD----P-KD   76 (170)
T ss_dssp             CTTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECC----T-TC
T ss_pred             CCCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECC----C-CC
Confidence            5899999 99999999999999999999999999999998 699999999999999975  45999999998    2 46


Q ss_pred             CHHHHHHHHHhhcCCCcceeee-ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-CChhhHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDK-VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-TSPLSIE  217 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-~~~~~l~  217 (225)
                      +.+.+++|+ ++++.+++.+.. ...+.+....+.+.++..... .++++.+.|++||||++|+|++++.|. .+++++.
T Consensus        77 ~~~~~~~~~-~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~  154 (170)
T 3me7_A           77 TLEDIKRFQ-KEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMT-AGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFV  154 (170)
T ss_dssp             CHHHHHHHH-HHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEE-ETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHH
T ss_pred             CHHHHHHHH-HHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEec-CCCccccCceEEEECCCCeEEEEEeCCCCCHHHHH
Confidence            899999999 888988764311 111111222232221110000 123678889999999999999988775 5688999


Q ss_pred             HHHHhhhC
Q 027311          218 VVLECLCC  225 (225)
Q Consensus       218 ~~l~~ll~  225 (225)
                      +.|+++++
T Consensus       155 ~~l~~~~~  162 (170)
T 3me7_A          155 NALRLARG  162 (170)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhc
Confidence            99998763

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.96  E-value=2e-28  Score=181.81  Aligned_cols=138  Identities=17%  Similarity=0.288  Sum_probs=122.1

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      .+|+.+|+|++++.+|+.+++++++||++||.||++||++|+.+++.+++++++++++++.+++|+.|.      ++.+.
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~------~~~~~   76 (153)
T 2l5o_A            3 LDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPI------DPIES   76 (153)
T ss_dssp             -CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTT------SCHHH
T ss_pred             CCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCC------CCHHH
Confidence            579999999999999999999999999999999999999999999999999999998899999999762      37889


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      +++|+ ++++.+|++.  .|.. ....+.|             ++.++|+++|||++|+|++++.|..+.+++.+.|+++
T Consensus        77 ~~~~~-~~~~~~~~~~--~d~~-~~~~~~~-------------~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  139 (153)
T 2l5o_A           77 VRQYV-KDYGLPFTVM--YDAD-KAVGQAF-------------GTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA  139 (153)
T ss_dssp             HHHHH-HHTTCCSEEE--ECSS-CHHHHHH-------------TCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHH
T ss_pred             HHHHH-HHcCCCceEE--cCch-HHHHHHc-------------CCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            99998 8889999987  3433 2233344             8888999999999999999999999999999999998


Q ss_pred             h
Q 027311          224 C  224 (225)
Q Consensus       224 l  224 (225)
                      |
T Consensus       140 l  140 (153)
T 2l5o_A          140 W  140 (153)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.96  E-value=3.7e-28  Score=180.56  Aligned_cols=138  Identities=17%  Similarity=0.323  Sum_probs=120.1

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      .+|+++|+|++++.+|+.+++++++||++||.||++||++|+.+++.++++++++++.++.+++|++|.      ++.+.
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~------~~~~~   76 (154)
T 3kcm_A            3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDE------GGKVA   76 (154)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCT------THHHH
T ss_pred             CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCC------cchHH
Confidence            689999999999999999999999999999999999999999999999999999998889999999984      13788


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--ChhhHHHHHH
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--SPLSIEVVLE  221 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--~~~~l~~~l~  221 (225)
                      +++|+ ++++.+|+++  .|... ...+.|             ++.++|++||||++|+|++++.|..  +.+++.+.|+
T Consensus        77 ~~~~~-~~~~~~~~~~--~d~~~-~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~  139 (154)
T 3kcm_A           77 VEEFF-RKTGFTLPVL--LDADK-RVGKLY-------------GTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLN  139 (154)
T ss_dssp             HHHHH-HHHCCCCCEE--ECTTC-HHHHHH-------------TCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHH
T ss_pred             HHHHH-HHcCCCeeEE--ecCch-HHHHHh-------------CCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHH
Confidence            88888 7889999998  34333 233444             8889999999999999999988876  5568999998


Q ss_pred             hhh
Q 027311          222 CLC  224 (225)
Q Consensus       222 ~ll  224 (225)
                      ++.
T Consensus       140 ~l~  142 (154)
T 3kcm_A          140 NEL  142 (154)
T ss_dssp             TC-
T ss_pred             HHH
Confidence            875

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.96  E-value=3.6e-28  Score=186.49  Aligned_cols=146  Identities=19%  Similarity=0.234  Sum_probs=120.4

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ....+|..+|+|++++.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++++++|++|.      ++
T Consensus        32 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~------~~  105 (186)
T 1jfu_A           32 TMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT------RD  105 (186)
T ss_dssp             EECCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCC------SC
T ss_pred             ccccCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCC------CC
Confidence            445789999999999999999999999999999999999999999999999999999998889999999984      13


Q ss_pred             HHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC--hhhHH
Q 027311          141 NEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS--PLSIE  217 (225)
Q Consensus       141 ~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~--~~~l~  217 (225)
                      .+.+++|+ +++++ .|+++  .|..+ ...+.|+..         ++..++|++||||++|+|++++.|..+  .+++.
T Consensus       106 ~~~~~~~~-~~~~~~~~~~~--~d~~~-~~~~~~~~~---------~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~  172 (186)
T 1jfu_A          106 PEKPKTFL-KEANLTRLGYF--NDQKA-KVFQDLKAI---------GRALGMPTSVLVDPQGCEIATIAGPAEWASEDAL  172 (186)
T ss_dssp             TTHHHHHH-HHTTCCTTCCE--ECTTC-HHHHHHHTT---------TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHH
T ss_pred             HHHHHHHH-HHcCCCCCceE--ECCcc-hHHHHhccc---------cccCCCCEEEEECCCCCEEEEEecCCccCHHHHH
Confidence            46778888 78888 58887  34432 233333211         023478999999999999999988765  67899


Q ss_pred             HHHHhhhC
Q 027311          218 VVLECLCC  225 (225)
Q Consensus       218 ~~l~~ll~  225 (225)
                      +.|+++++
T Consensus       173 ~~l~~ll~  180 (186)
T 1jfu_A          173 KLIRAATG  180 (186)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99999874

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.96  E-value=5.5e-28  Score=185.92  Aligned_cols=136  Identities=13%  Similarity=0.201  Sum_probs=117.3

Q ss_pred             CCCceecCeEEeCCCCC----eecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKGQ----DVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~----~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      .+|+.+|+|++.+.+|+    .+++++++||++||+|| ++||++|+.+++.|++++++|+++++++++|++|       
T Consensus         2 ~~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d-------   74 (187)
T 1we0_A            2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTD-------   74 (187)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESS-------
T ss_pred             CCCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECC-------
Confidence            58999999999999999    99999999999999999 9999999999999999999999888999999998       


Q ss_pred             CCHHHHHHHHHhhc----CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc------cceeEEEECCCCcEEEEcC
Q 027311          139 GDNEQIQEFACTRF----KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK------WNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       139 ~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~I~~~~~  208 (225)
                       +.+.+++|+ +++    +.+|+++.  |.. ....+.|             ++.      ++|++||||++|+|++++.
T Consensus        75 -~~~~~~~~~-~~~~~~~~~~~~~~~--d~~-~~~~~~~-------------~v~~~~~g~~~P~~~lid~~G~i~~~~~  136 (187)
T 1we0_A           75 -THFVHKAWH-ENSPAVGSIEYIMIG--DPS-QTISRQF-------------DVLNEETGLADRGTFIIDPDGVIQAIEI  136 (187)
T ss_dssp             -CHHHHHHHH-HSCHHHHTCCSEEEE--CTT-CHHHHHT-------------TCEETTTTEECEEEEEECTTSBEEEEEE
T ss_pred             -CHHHHHHHH-HHhccccCCCceEEE--CCc-hHHHHHh-------------CCCcCCCCceeeEEEEECCCCeEEEEEe
Confidence             678888888 666    78999884  433 3333444             454      7899999999999999988


Q ss_pred             CCC----ChhhHHHHHHhhh
Q 027311          209 PTT----SPLSIEVVLECLC  224 (225)
Q Consensus       209 g~~----~~~~l~~~l~~ll  224 (225)
                      |..    +.+++.+.|++++
T Consensus       137 g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          137 NADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             ECTTSCCCTTHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHh
Confidence            764    5678888888764

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.96  E-value=3.8e-28  Score=191.72  Aligned_cols=142  Identities=16%  Similarity=0.234  Sum_probs=116.0

Q ss_pred             cCCCceecCeEEeCC--CC--CeecCCcc-CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC
Q 027311           63 SQSKTSVHDFSVKDA--KG--QDVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ  136 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~--~G--~~~~l~~~-~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~  136 (225)
                      +.+|+++|+|++++.  +|  +.++++++ +||++||+|| ++|||+|+.++|.|++++++|++++++||+||+|     
T Consensus        25 l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D-----   99 (221)
T 2c0d_A           25 SLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVD-----   99 (221)
T ss_dssp             -CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESS-----
T ss_pred             CCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCC-----
Confidence            579999999999999  99  99999999 9999999999 9999999999999999999999889999999997     


Q ss_pred             CCCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          137 EPGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                         +.+.+++|+ +++       +++||++.  |.. ....+.|+.. ...      + ..+|++||||++|+|++++.|
T Consensus       100 ---~~~~~~~~~-~~~~~~~g~~~~~fp~l~--D~~-~~~~~~ygv~-~~~------g-~~~P~~~lID~~G~I~~~~~g  164 (221)
T 2c0d_A          100 ---SVYSHLAWK-NMPIEKGGIGNVEFTLVS--DIN-KDISKNYNVL-YDN------S-FALRGLFIIDKNGCVRHQTVN  164 (221)
T ss_dssp             ---CHHHHHHHH-HSCGGGTCCCSCSSEEEE--CTT-SHHHHHTTCE-ETT------T-EECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHH-HHhhhhcCccCCceEEEE--CCc-hHHHHHcCCc-ccC------C-CccceEEEECCCCeEEEEEec
Confidence               778888898 666       67899884  433 3344455322 110      1 358999999999999999866


Q ss_pred             C----CChhhHHHHHHhhh
Q 027311          210 T----TSPLSIEVVLECLC  224 (225)
Q Consensus       210 ~----~~~~~l~~~l~~ll  224 (225)
                      .    .+.+++.+.|++|.
T Consensus       165 ~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          165 DLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             CTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHh
Confidence            4    24567888887764

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.95  E-value=2.7e-28  Score=187.77  Aligned_cols=142  Identities=10%  Similarity=0.207  Sum_probs=115.3

Q ss_pred             CCCceecCeEEeCC-CC--CeecCCccCCCEEEEEEcc-cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDA-KG--QDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~l~~~-~G--~~~~l~~~~gk~vlv~F~~-twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      .+|+++|+|++.+. +|  +.+++++++||++||+||+ +|||+|+.+++.|++++++|++++++|++||+|        
T Consensus         2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d--------   73 (186)
T 1n8j_A            2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTD--------   73 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECC--------
Confidence            57999999999999 59  8999999999999999995 999999999999999999999889999999998        


Q ss_pred             CHHHHHHHHHhhc----CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----
Q 027311          140 DNEQIQEFACTRF----KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----  211 (225)
Q Consensus       140 ~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----  211 (225)
                      +.+.+++|+ +++    +++||++.  |..+ ...+.|+......      + .++|++||||++|+|++++.|..    
T Consensus        74 ~~~~~~~~~-~~~~~~~~~~fp~l~--D~~~-~~~~~ygv~~~~~------g-~~~p~~~lID~~G~i~~~~~~~~~~~~  142 (186)
T 1n8j_A           74 THFTHKAWH-SSSETIAKIKYAMIG--DPTG-ALTRNFDNMREDE------G-LADRATFVVDPQGIIQAIEVTAEGIGR  142 (186)
T ss_dssp             CHHHHHHHH-HHCTTGGGCCSEEEE--CTTS-HHHHHTTCEETTT------T-EECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred             CHHHHHHHH-HHcCcccCCceeEEE--CCch-HHHHHhCCccCCC------C-ceeeEEEEECCCCeEEEEEecCCCCCC
Confidence            678888998 677    78999884  4333 3444453221100      1 14799999999999999987654    


Q ss_pred             ChhhHHHHHHhhh
Q 027311          212 SPLSIEVVLECLC  224 (225)
Q Consensus       212 ~~~~l~~~l~~ll  224 (225)
                      +.+++.+.|++|.
T Consensus       143 ~~~~l~~~l~~l~  155 (186)
T 1n8j_A          143 DASDLLRKIKAAQ  155 (186)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4677888887764

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.95  E-value=4.7e-28  Score=182.40  Aligned_cols=143  Identities=11%  Similarity=0.097  Sum_probs=113.1

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcc-cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~-twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ....+|+.+|+|++++.+|+.+++++++||++||+||+ +||++|+.+++.|+++++++  +++++++||.|        
T Consensus        14 ~~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d--------   83 (163)
T 1psq_A           14 KQLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMD--------   83 (163)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESS--------
T ss_pred             CCCCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECC--------
Confidence            34679999999999999999999999999999999995 99999999999999999999  67999999988        


Q ss_pred             CHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC-----Ch
Q 027311          140 DNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-----SP  213 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~-----~~  213 (225)
                      +.+.+++|+ +++++ +||++.  |.......+.|+.....    .  ++ ..|++||||++|+|++++.|..     +.
T Consensus        84 ~~~~~~~~~-~~~~~~~~~~l~--D~~~~~~~~~~gv~~~~----~--g~-~~p~~~liD~~G~i~~~~~g~~~~~~~~~  153 (163)
T 1psq_A           84 LPFAQKRWC-GAEGLDNAIMLS--DYFDHSFGRDYALLINE----W--HL-LARAVFVLDTDNTIRYVEYVDNINSEPNF  153 (163)
T ss_dssp             CHHHHHHHH-HHHTCTTSEEEE--CTTTCHHHHHHTCBCTT----T--CS-BCCEEEEECTTCBEEEEEECSBTTSCCCH
T ss_pred             CHHHHHHHH-HhcCCCCcEEec--CCchhHHHHHhCCcccc----C--Cc-eEEEEEEEcCCCeEEEEEecCCcCCCCCH
Confidence            678889998 77899 999884  41223344555322110    0  11 2599999999999999987632     22


Q ss_pred             hhHHHHHHhh
Q 027311          214 LSIEVVLECL  223 (225)
Q Consensus       214 ~~l~~~l~~l  223 (225)
                      +++.+.|++|
T Consensus       154 ~~~l~~l~~l  163 (163)
T 1psq_A          154 EAAIAAAKAL  163 (163)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            5677777653

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.95  E-value=4.2e-28  Score=181.64  Aligned_cols=137  Identities=20%  Similarity=0.265  Sum_probs=114.7

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCC-EEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ..+|+.+|+|++.+.+|+.+++++++|| ++||+|| ++||++|+.+++.|++++++++++++++++|++|        +
T Consensus         9 ~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~   80 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG--------P   80 (160)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC--------C
T ss_pred             CCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCC--------C
Confidence            5799999999999999999999999998 9999998 9999999999999999999999888999999997        7


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecC-CCCCchhhhhhccccCCCCCCCccc----cce--eEEEECCCCcEEEEcCCCCCh
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDV-NGDNAAPLYKHLKSSKGGLFGDSIK----WNF--SKFLVDKEGNVVERYAPTTSP  213 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~v~----~~P--~~~lid~~G~I~~~~~g~~~~  213 (225)
                      .+.+++|+ ++++.+|+++.  |. ......+.|             ++.    ++|  ++||||++|+|++++.|..+.
T Consensus        81 ~~~~~~~~-~~~~~~~~~~~--d~~~~~~~~~~~-------------~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~  144 (160)
T 1xvw_A           81 PPTHKIWA-TQSGFTFPLLS--DFWPHGAVSQAY-------------GVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGE  144 (160)
T ss_dssp             HHHHHHHH-HHHTCCSCEEE--CTTTTTHHHHHT-------------TCEETTTTEECSEEEEECTTSBEEEEEECCTTC
T ss_pred             HHHHHHHH-HhcCCCceEEe--cCCcChHHHHHc-------------CCccccCCCeeeeEEEECCCCeEEEEEecCCCC
Confidence            78999998 78899999884  43 123333444             454    678  999999999999999887643


Q ss_pred             ----hhHHHHHHhh
Q 027311          214 ----LSIEVVLECL  223 (225)
Q Consensus       214 ----~~l~~~l~~l  223 (225)
                          +++.+.|+++
T Consensus       145 ~~~~~~l~~~l~~l  158 (160)
T 1xvw_A          145 VRDQRLWTDALAAL  158 (160)
T ss_dssp             CCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHh
Confidence                3455555544

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.95  E-value=4.3e-28  Score=177.91  Aligned_cols=139  Identities=17%  Similarity=0.303  Sum_probs=117.4

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ....+|+.+|+|++++.+|+.+++++ +||++||.||++||++|+.+++.++++++++++.++.+++|++|.    ..++
T Consensus         7 ~~~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~----~~~~   81 (145)
T 3erw_A            7 AEEKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN----SEQN   81 (145)
T ss_dssp             -----CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGG----GSSC
T ss_pred             ccccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccC----CcCC
Confidence            34578999999999999999999999 999999999999999999999999999999997789999999873    3347


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                      .+.+++|. ++++++|+++  .|.... ..+.|             ++.++|+++|+|++|+|++++.|..+.+++++.|
T Consensus        82 ~~~~~~~~-~~~~~~~~~~--~d~~~~-~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           82 QQVVEDFI-KANKLTFPIV--LDSKGE-LMKEY-------------HIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             HHHHHHHH-HHTTCCSCEE--ECSSSH-HHHHT-------------TCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHHHH-HHcCCceeEE--EcCchh-HHHhc-------------CcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            89999998 7889999988  343332 33333             8889999999999999999999999888888776


Q ss_pred             H
Q 027311          221 E  221 (225)
Q Consensus       221 ~  221 (225)
                      +
T Consensus       145 ~  145 (145)
T 3erw_A          145 E  145 (145)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.95  E-value=4.2e-28  Score=183.18  Aligned_cols=142  Identities=15%  Similarity=0.118  Sum_probs=112.1

Q ss_pred             ccccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           60 TMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        60 ~~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      +..+.+|+++|+|+++|.+|+.+++++++||++||+|| ++||++|+.+++.|++++++   +++++++||.|       
T Consensus        17 ~~~l~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d-------   86 (166)
T 3p7x_A           17 GQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISAD-------   86 (166)
T ss_dssp             SCCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESS-------
T ss_pred             cccCCCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECC-------
Confidence            34568999999999999999999999999999999999 78999999999999999988   67999999987       


Q ss_pred             CCHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-----CC
Q 027311          139 GDNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-----TS  212 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-----~~  212 (225)
                       +.+.+++|+ +++++ +||++.  |.......+.|+......      +. .+|++||||++|+|++++.+.     .+
T Consensus        87 -~~~~~~~~~-~~~~~~~~~~l~--D~~~~~~~~~~gv~~~~~------g~-~~p~~~liD~~G~i~~~~~~~~~~~~~~  155 (166)
T 3p7x_A           87 -LPFAQKRWC-ASAGLDNVITLS--DHRDLSFGENYGVVMEEL------RL-LARAVFVLDADNKVVYKEIVSEGTDFPD  155 (166)
T ss_dssp             -CHHHHHHHH-HHHTCSSCEEEE--CTTTCHHHHHHTCEETTT------TE-ECCEEEEECTTCBEEEEEECSBTTSCCC
T ss_pred             -CHHHHHHHH-HHcCCCceEEcc--CCchhHHHHHhCCccccC------Cc-eeeEEEEECCCCeEEEEEEcCCcccCCC
Confidence             788999998 78899 899984  542334555663322110      11 379999999999999985532     23


Q ss_pred             hhhHHHHHHh
Q 027311          213 PLSIEVVLEC  222 (225)
Q Consensus       213 ~~~l~~~l~~  222 (225)
                      .+++.+.|++
T Consensus       156 ~~~il~~l~~  165 (166)
T 3p7x_A          156 FDAALAAYKN  165 (166)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            3556666554

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.95  E-value=5.1e-28  Score=182.59  Aligned_cols=145  Identities=14%  Similarity=0.098  Sum_probs=112.9

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ...+|+.+|+|++++.+|+.+++++++||++||+|| ++||++|..+++.|++++++|  ++++|++||.|        +
T Consensus        16 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d--------~   85 (165)
T 1q98_A           16 FPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISAD--------L   85 (165)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESS--------C
T ss_pred             cCCCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCC--------C
Confidence            457999999999999999999999999999999999 899999999999999999999  67999999987        7


Q ss_pred             HHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC--CChhhHH
Q 027311          141 NEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT--TSPLSIE  217 (225)
Q Consensus       141 ~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~--~~~~~l~  217 (225)
                      .+.+++|+ +++++ +||++.  |.......+.|+..... ....  + .+.|++||||++|+|++++.|.  ....+++
T Consensus        86 ~~~~~~~~-~~~~~~~~~~l~--D~~~~~~~~~~gv~~~~-~~~~--g-~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~  158 (165)
T 1q98_A           86 PFAQARFC-GAEGIENAKTVS--TFRNHALHSQLGVDIQT-GPLA--G-LTSRAVIVLDEQNNVLHSQLVEEIKEEPNYE  158 (165)
T ss_dssp             HHHHTTCT-TTTTCTTEEEEE--CTTCTHHHHHTTCEECS-STTT--T-SBCCEEEEECTTSBEEEEEECSBTTSCCCHH
T ss_pred             HHHHHHHH-HHcCCCceEEee--ccccchHHHHhCceecc-cccC--C-ccceeEEEEcCCCEEEEEEeCCCCCCCCCHH
Confidence            78888888 78899 799884  43223344455432211 0011  1 1469999999999999998752  2334566


Q ss_pred             HHHHhh
Q 027311          218 VVLECL  223 (225)
Q Consensus       218 ~~l~~l  223 (225)
                      +.++.|
T Consensus       159 ~~l~~l  164 (165)
T 1q98_A          159 AALAVL  164 (165)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            655543

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.95  E-value=3.6e-29  Score=189.33  Aligned_cols=154  Identities=19%  Similarity=0.282  Sum_probs=120.9

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCC-ChHhHHHHHHHHHHHhcC---CeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKNQ---GLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~-C~~~~~~l~~l~~~~~~~---~~~iv~Is~d~~~~~~~~  139 (225)
                      .+|+.+|+|++++.+| .+++++++||++||+||++||++ |+.+++.|++++++++++   ++++++|++|.    +++
T Consensus        11 ~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~----~~d   85 (172)
T 2k6v_A           11 LLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDP----ERD   85 (172)
T ss_dssp             EEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCT----TTC
T ss_pred             ccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECC----CCC
Confidence            4688999999999999 99999999999999999999997 999999999999999864   69999999983    456


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCC--CCCCCccccceeEEEECCCCcEEEEcCCCC--Chhh
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG--GLFGDSIKWNFSKFLVDKEGNVVERYAPTT--SPLS  215 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--~~~~  215 (225)
                      +.+.+++|+ ++++.+|+++.+.+.......+.|+.......  ....+++.++|++|||| +|+|++++.|..  +.++
T Consensus        86 ~~~~~~~~~-~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~  163 (172)
T 2k6v_A           86 PPEVADRYA-KAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDR  163 (172)
T ss_dssp             CHHHHHHHH-HHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHH
T ss_pred             CHHHHHHHH-HHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHH
Confidence            889999999 78899999884211100122222322111000  01113578899999999 999999999887  8889


Q ss_pred             HHHHHHhhh
Q 027311          216 IEVVLECLC  224 (225)
Q Consensus       216 l~~~l~~ll  224 (225)
                      +.+.|+++|
T Consensus       164 l~~~l~~ll  172 (172)
T 2k6v_A          164 VVADLQALL  172 (172)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHhC
Confidence            999999875

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.95  E-value=1.7e-27  Score=184.51  Aligned_cols=137  Identities=12%  Similarity=0.170  Sum_probs=117.8

Q ss_pred             cCCCceecCeEEeCCC-------------C--CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEE
Q 027311           63 SQSKTSVHDFSVKDAK-------------G--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEIL  126 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~-------------G--~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv  126 (225)
                      +.+|+.+|+|++.+.+             |  +.+++++++||++||+|| ++||++|+.+++.|++++++|++++++++
T Consensus         4 l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv   83 (195)
T 2bmx_A            4 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQIL   83 (195)
T ss_dssp             CCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEE
T ss_pred             CCCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence            4789999999999998             7  899999999999999999 99999999999999999999998889999


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHhhc----CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc-----cceeEEEE
Q 027311          127 AFPCNQFGAQEPGDNEQIQEFACTRF----KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK-----WNFSKFLV  197 (225)
Q Consensus       127 ~Is~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~li  197 (225)
                      +|++|        +.+.+++|+ +++    +.+|+++.  |.. ....+.|             ++.     ++|++|||
T Consensus        84 ~Vs~d--------~~~~~~~~~-~~~~~~~~~~~~~~~--d~~-~~~~~~~-------------~v~~~~g~~~P~~~li  138 (195)
T 2bmx_A           84 GVSID--------SEFAHFQWR-AQHNDLKTLPFPMLS--DIK-RELSQAA-------------GVLNADGVADRVTFIV  138 (195)
T ss_dssp             EEESS--------CHHHHHHHH-HHCTTGGGCCSCEEE--CTT-SHHHHHH-------------TCBCTTSSBCEEEEEE
T ss_pred             EEECC--------CHHHHHHHH-HHhccccCCceeEEe--CCc-hHHHHHh-------------CCcccCCCccceEEEE
Confidence            99998        678888898 666    78899884  433 3344445             555     78999999


Q ss_pred             CCCCcEEEEcCCCC----ChhhHHHHHHhhh
Q 027311          198 DKEGNVVERYAPTT----SPLSIEVVLECLC  224 (225)
Q Consensus       198 d~~G~I~~~~~g~~----~~~~l~~~l~~ll  224 (225)
                      |++|+|++++.|..    +.+++.+.|++++
T Consensus       139 d~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  169 (195)
T 2bmx_A          139 DPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  169 (195)
T ss_dssp             CTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99999999987765    5678888888775

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.95  E-value=7e-28  Score=177.39  Aligned_cols=142  Identities=18%  Similarity=0.243  Sum_probs=122.9

Q ss_pred             CCCceecCeEE--eCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           64 QSKTSVHDFSV--KDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        64 ~~g~~~p~f~l--~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ++|+++|+|++  ++.+|+.+++++++||++||.||++||++|+.+++.+++++++++++ +.+++|++|...  ...+.
T Consensus         2 ~~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~--~~~~~   78 (148)
T 2b5x_A            2 KLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSE--DDLDP   78 (148)
T ss_dssp             CTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCST--TTSSH
T ss_pred             CCCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCc--cccCH
Confidence            58999999999  78999999999999999999999999999999999999999999987 999999988522  23378


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +++++|+ ++++++||++  .|.... ..+.|             ++.++|+++|+|++|++++++.|..+.+++++.|+
T Consensus        79 ~~~~~~~-~~~~~~~~~~--~d~~~~-~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  141 (148)
T 2b5x_A           79 GKIKETA-AEHDITQPIF--VDSDHA-LTDAF-------------ENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN  141 (148)
T ss_dssp             HHHHHHH-HHTTCCSCEE--ECSSCH-HHHHT-------------CCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCcceE--ECCchh-HHHHh-------------CCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHH
Confidence            8999998 7889999987  343322 33333             88899999999999999999999888999999999


Q ss_pred             hhhC
Q 027311          222 CLCC  225 (225)
Q Consensus       222 ~ll~  225 (225)
                      ++++
T Consensus       142 ~~l~  145 (148)
T 2b5x_A          142 RVLA  145 (148)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9874

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.95  E-value=7.7e-28  Score=186.76  Aligned_cols=136  Identities=11%  Similarity=0.172  Sum_probs=116.5

Q ss_pred             CCCceecCeEEeCC--CCC---eecCCcc-CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC
Q 027311           64 QSKTSVHDFSVKDA--KGQ---DVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ  136 (225)
Q Consensus        64 ~~g~~~p~f~l~~~--~G~---~~~l~~~-~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~  136 (225)
                      .+|+.+|+|++++.  +|+   .++++++ +||++||+|| ++||++|+.++|.|++++++|+++++++++|++|     
T Consensus         2 ~~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d-----   76 (198)
T 1zof_A            2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID-----   76 (198)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESS-----
T ss_pred             CCCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECC-----
Confidence            58999999999999  898   9999999 9999999999 9999999999999999999999889999999998     


Q ss_pred             CCCCHHHHHHHHHhh-------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc-----cceeEEEECCCCcEE
Q 027311          137 EPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK-----WNFSKFLVDKEGNVV  204 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~I~  204 (225)
                         +.+.+++|+ ++       ++++||++.  |..+ ...+.|             ++.     ++|++||||++|+|+
T Consensus        77 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~--d~~~-~~~~~~-------------~v~~~~g~~~P~~~lid~~G~i~  136 (198)
T 1zof_A           77 ---SEQVHFAWK-NTPVEKGGIGQVSFPMVA--DITK-SISRDY-------------DVLFEEAIALRGAFLIDKNMKVR  136 (198)
T ss_dssp             ---CHHHHHHHH-TSCGGGTCCCCCSSCEEE--CTTS-HHHHHT-------------TCEETTTEECEEEEEEETTTEEE
T ss_pred             ---CHHHHHHHH-HhhhhcccccCceeEEEE--CCch-HHHHHh-------------CCcccCCcccceEEEECCCCEEE
Confidence               678888888 66       788999883  4332 333444             555     799999999999999


Q ss_pred             EEcCCCC----ChhhHHHHHHhhh
Q 027311          205 ERYAPTT----SPLSIEVVLECLC  224 (225)
Q Consensus       205 ~~~~g~~----~~~~l~~~l~~ll  224 (225)
                      +++.|..    +.+++.+.|+++.
T Consensus       137 ~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          137 HAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHH
Confidence            9987754    4567888887764

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.95  E-value=4.4e-28  Score=182.45  Aligned_cols=142  Identities=19%  Similarity=0.265  Sum_probs=120.9

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC---------
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ---------  132 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~---------  132 (225)
                      ...+|+.+|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++  ++.+++|++|.         
T Consensus        10 ~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~~   87 (165)
T 3ha9_A           10 SEEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALGL   87 (165)
T ss_dssp             HHHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHTC
T ss_pred             cccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEeccccccccccc
Confidence            3578999999999999999999999999999999999999999999999999999998  69999999881         


Q ss_pred             --CCCCCCCCHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          133 --FGAQEPGDNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       133 --~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                        .+.+++++.+.+++|+ +++++ +|+++.  |  .....+.|             ++.++|+++|||++|+|++  .|
T Consensus        88 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--d--~~~~~~~~-------------~v~~~P~~~lid~~G~i~~--~g  147 (165)
T 3ha9_A           88 NKPGYPPPDTPEMFRKFI-ANYGDPSWIMVM--D--DGSLVEKF-------------NVRSIDYIVIMDKSSNVLY--AG  147 (165)
T ss_dssp             CSTTSCCCCCHHHHHHHH-HHHSCTTSEEEE--C--CSHHHHHT-------------TCCSSSEEEEEETTCCEEE--EE
T ss_pred             ccccCCCCCCHHHHHHHH-HHcCCCCeeEEe--C--hHHHHHHh-------------CCCCceEEEEEcCCCcEEE--eC
Confidence              2233445899999999 78889 999984  4  23344444             8889999999999999998  66


Q ss_pred             CC-ChhhHHHHHHhhhC
Q 027311          210 TT-SPLSIEVVLECLCC  225 (225)
Q Consensus       210 ~~-~~~~l~~~l~~ll~  225 (225)
                      .. +.+++++.|+++++
T Consensus       148 ~~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          148 TTPSLGELESVIKSVQG  164 (165)
T ss_dssp             ESCCHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            67 78999999998863

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.95  E-value=1.2e-27  Score=187.84  Aligned_cols=138  Identities=13%  Similarity=0.172  Sum_probs=117.3

Q ss_pred             ccCCCceecCeEEeCC--CC--CeecCCcc-CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCC
Q 027311           62 ASQSKTSVHDFSVKDA--KG--QDVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGA  135 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~--~G--~~~~l~~~-~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~  135 (225)
                      .+.+|+++|+|++.+.  +|  +.++++++ +||++||+|| ++||++|+.+++.|++++++|++++++||+||+|    
T Consensus        20 ~l~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D----   95 (213)
T 2i81_A           20 PTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVD----   95 (213)
T ss_dssp             CCCBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESS----
T ss_pred             cccCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC----
Confidence            4579999999999999  89  89999999 9999999999 9999999999999999999999889999999998    


Q ss_pred             CCCCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc-----cceeEEEECCCCcE
Q 027311          136 QEPGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK-----WNFSKFLVDKEGNV  203 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~I  203 (225)
                          +.+.+++|+ +++       +++||++.  |.. ....+.|             ++.     .+|++||||++|+|
T Consensus        96 ----~~~~~~~~~-~~~~~~~g~~~~~fp~l~--D~~-~~~~~~y-------------gv~~~~g~~~p~~~lID~~G~i  154 (213)
T 2i81_A           96 ----SKYTHLAWK-KTPLAKGGIGNIKHTLLS--DIT-KSISKDY-------------NVLFDDSVSLRAFVLIDMNGIV  154 (213)
T ss_dssp             ----CHHHHHHHH-SSCGGGTCCCSCSSEEEE--CTT-SHHHHHT-------------TCEETTTEECEEEEEECTTSBE
T ss_pred             ----CHHHHHHHH-HHHHhhCCccCCCceEEE--CCc-hHHHHHh-------------CCccccCCcccEEEEECCCCEE
Confidence                778888898 666       78899884  433 3344445             454     78999999999999


Q ss_pred             EEEcCCCC----ChhhHHHHHHhhh
Q 027311          204 VERYAPTT----SPLSIEVVLECLC  224 (225)
Q Consensus       204 ~~~~~g~~----~~~~l~~~l~~ll  224 (225)
                      ++++.|..    +.+++.+.|+++.
T Consensus       155 ~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          155 QHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             EEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99986643    3677888887764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.95  E-value=7.4e-28  Score=188.85  Aligned_cols=145  Identities=10%  Similarity=0.113  Sum_probs=115.0

Q ss_pred             cccCCCceecCeEEeCC---CCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDA---KGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ  136 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~  136 (225)
                      ..+.+|+++|+|++.+.   +|+.+++++++||++||+|| ++||++|+.+++.|++++++|++++++||+||+|     
T Consensus        17 ~~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D-----   91 (211)
T 2pn8_A           17 NLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVD-----   91 (211)
T ss_dssp             --CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-----
T ss_pred             ccCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            34578999999999975   56899999999999999999 9999999999999999999999889999999997     


Q ss_pred             CCCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          137 EPGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                         +.+.+++|+ +++       +.+||++.  |.. ....+.|+......      + ..+|++||||++|+|++++.|
T Consensus        92 ---~~~~~~~~~-~~~~~~~g~~~~~fp~l~--D~~-~~~~~~ygv~~~~~------g-~~~p~~~lID~~G~I~~~~~g  157 (211)
T 2pn8_A           92 ---SQFTHLAWI-NTPRRQGGLGPIRIPLLS--DLT-HQISKDYGVYLEDS------G-HTLRGLFIIDDKGILRQITLN  157 (211)
T ss_dssp             ---CHHHHHHHH-TSCGGGTCCCSCSSCEEE--CTT-SHHHHHTTCEETTT------T-EECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHH-HHhhhccCccCCceEEEE--CCc-hHHHHHcCCcccCC------C-cccceEEEECCCCEEEEEEec
Confidence               778888898 666       78899884  433 33444553221110      1 258999999999999999866


Q ss_pred             CC----ChhhHHHHHHhhh
Q 027311          210 TT----SPLSIEVVLECLC  224 (225)
Q Consensus       210 ~~----~~~~l~~~l~~ll  224 (225)
                      ..    +.+++.+.|++|.
T Consensus       158 ~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          158 DLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             CTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhh
Confidence            43    4467787777764

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.95  E-value=6.6e-28  Score=179.27  Aligned_cols=140  Identities=21%  Similarity=0.271  Sum_probs=120.5

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      .+.+|+++|+|++++.+|+.+++++++ |++||+||++||++|+.+++.|+++++++   ++.+++|++|     ..++.
T Consensus         4 ~l~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d-----~~~~~   74 (154)
T 3ia1_A            4 AVKPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISRE-----PRDTR   74 (154)
T ss_dssp             CCCSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEECC-----TTCCH
T ss_pred             cCCCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeCC-----CcccH
Confidence            457999999999999999999999999 99999999999999999999999999999   5999999995     22388


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +.+++|+ ++++.+|+++.  |. ......+.+.          +++.++|++||||++|+|++++.|..+.+++++.|+
T Consensus        75 ~~~~~~~-~~~~~~~~~~~--d~-~~~~~~~~~~----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  140 (154)
T 3ia1_A           75 EVVLEYM-KTYPRFIPLLA--SD-RDRPHEVAAR----------FKVLGQPWTFVVDREGKVVALFAGRAGREALLDALL  140 (154)
T ss_dssp             HHHHHHH-TTCTTEEECBC--CS-SCCHHHHHTT----------SSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHH
T ss_pred             HHHHHHH-HHcCCCccccc--cc-ccchHHHHHH----------hCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHH
Confidence            9999998 88899999883  31 1122223322          288899999999999999999999999999999999


Q ss_pred             hhh
Q 027311          222 CLC  224 (225)
Q Consensus       222 ~ll  224 (225)
                      +++
T Consensus       141 ~~~  143 (154)
T 3ia1_A          141 LAG  143 (154)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            876

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.95  E-value=1.8e-27  Score=185.34  Aligned_cols=137  Identities=16%  Similarity=0.224  Sum_probs=116.4

Q ss_pred             cCCCceecCeEEeCC--CC--CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDA--KG--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~--~G--~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      ..+|+++|+|++.+.  +|  +.+++++++||++||+|| ++||++|+.+++.|++++++|+++++++++||+|      
T Consensus         6 ~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D------   79 (202)
T 1uul_A            6 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMD------   79 (202)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             ccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC------
Confidence            478999999999998  78  899999999999999999 9999999999999999999999889999999998      


Q ss_pred             CCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc------cceeEEEECCCCcEE
Q 027311          138 PGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK------WNFSKFLVDKEGNVV  204 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~I~  204 (225)
                        +.+.+++|+ +++       +++||++.  |.. ....+.|             ++.      ++|++||||++|+|+
T Consensus        80 --~~~~~~~~~-~~~~~~~~~~~~~~p~l~--D~~-~~~~~~y-------------gv~~~~~g~~~P~~~lid~~G~i~  140 (202)
T 1uul_A           80 --SEYSHLAWT-SIERKRGGLGQMNIPILA--DKT-KCIMKSY-------------GVLKEEDGVAYRGLFIIDPKQNLR  140 (202)
T ss_dssp             --CHHHHHHHH-HSCGGGTCCCSCSSCEEE--CTT-CHHHHHH-------------TCEETTTTEECEEEEEECTTSBEE
T ss_pred             --CHHHHHHHH-HHHHhhCCCCCCceeEEE--CCc-hHHHHHc-------------CCccCCCCceeeEEEEECCCCEEE
Confidence              678888888 666       78899884  433 3344455             444      789999999999999


Q ss_pred             EEcCCCCC----hhhHHHHHHhhh
Q 027311          205 ERYAPTTS----PLSIEVVLECLC  224 (225)
Q Consensus       205 ~~~~g~~~----~~~l~~~l~~ll  224 (225)
                      +++.|..+    .+++.+.|+++.
T Consensus       141 ~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          141 QITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             EEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCCHHHHHHHHHHhh
Confidence            99876543    467888887764

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.95  E-value=1.7e-27  Score=185.30  Aligned_cols=146  Identities=16%  Similarity=0.174  Sum_probs=114.5

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+.+|+++|+|+++|.+|+.++|++++||++||+|| ++||++|+.+++.|++++++|  ++++|++||.|        
T Consensus        50 ~~l~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D--------  119 (200)
T 3zrd_A           50 KLPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSD--------  119 (200)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESS--------
T ss_pred             ccCCCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECC--------
Confidence            3468999999999999999999999999999999999 779999999999999999999  67999999988        


Q ss_pred             CHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC--CChhhH
Q 027311          140 DNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT--TSPLSI  216 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~--~~~~~l  216 (225)
                      +.+.+++|+ +++++ +|+++.  |.......+.|+...... ...  ++ +.|++||||++|+|++++.+.  ....++
T Consensus       120 ~~~~~~~~~-~~~~~~~f~~l~--D~~~~~~~~~ygv~~~~~-~~~--g~-~~p~~~lID~~G~I~~~~~~~~~~~~~~~  192 (200)
T 3zrd_A          120 LPFAQSRFC-GAEGLSNVITLS--TLRGADFKQAYGVAITEG-PLA--GL-TARAVVVLDGQDNVIYSELVNEITTEPNY  192 (200)
T ss_dssp             CHHHHTTCT-TTTTCTTEEEEE--TTSCTHHHHHTTCEECSS-TTT--TS-BCCEEEEECTTSBEEEEEECSBTTSCCCH
T ss_pred             CHHHHHHHH-HHcCCCCceEEe--cCchHHHHHHhCceeecc-cCC--Cc-cccEEEEECCCCeEEEEEecCCcccCCCH
Confidence            788888888 78899 999884  542334455554332111 001  21 579999999999999997653  223356


Q ss_pred             HHHHHhh
Q 027311          217 EVVLECL  223 (225)
Q Consensus       217 ~~~l~~l  223 (225)
                      ++.|+.|
T Consensus       193 ~~~l~~L  199 (200)
T 3zrd_A          193 DAALAAL  199 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            6666554

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.95  E-value=1.6e-27  Score=185.41  Aligned_cols=157  Identities=15%  Similarity=0.129  Sum_probs=116.4

Q ss_pred             cCCCcee--cCeEEeCCCCCeecCCccCCCEEEEEEcccCCCC-ChHhHHHHHHHHHHHhc---CCeEEEEEecCCCCCC
Q 027311           63 SQSKTSV--HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGL-TNSNYTELSQLYDKYKN---QGLEILAFPCNQFGAQ  136 (225)
Q Consensus        63 ~~~g~~~--p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~-C~~~~~~l~~l~~~~~~---~~~~iv~Is~d~~~~~  136 (225)
                      ..+|+++  |+|+++|.+|+.+++++++||++||+||++||++ |+.+++.|+++++++++   .++++++||+|    +
T Consensus        13 ~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D----~   88 (200)
T 2b7k_A           13 RGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD----P   88 (200)
T ss_dssp             ---CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC----T
T ss_pred             hccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECC----C
Confidence            4677775  9999999999999999999999999999999997 99999999999999975   37999999998    3


Q ss_pred             CCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCC---CCCCCccccceeEEEECCCCcEEEEcCCCCCh
Q 027311          137 EPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG---GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP  213 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~  213 (225)
                      +.|+.+.+++|+ ++++.+|+.+.+.........+.|+.......   ...++.+.+.|++||||++|+|++++.|..++
T Consensus        89 ~~d~~~~~~~~~-~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~  167 (200)
T 2b7k_A           89 ARDSPAVLKEYL-SDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDE  167 (200)
T ss_dssp             TTCCHHHHHHHH-TTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCT
T ss_pred             CCCCHHHHHHHH-HHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCH
Confidence            456889999998 78888888764211111112223322100000   01123456778999999999999999988888


Q ss_pred             hhHHHHHHhhh
Q 027311          214 LSIEVVLECLC  224 (225)
Q Consensus       214 ~~l~~~l~~ll  224 (225)
                      +++.+.|+++|
T Consensus       168 ~~~~~~i~~~l  178 (200)
T 2b7k_A          168 KTGVDKIVEHV  178 (200)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877765

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.95  E-value=7e-28  Score=181.88  Aligned_cols=145  Identities=13%  Similarity=0.127  Sum_probs=115.3

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccC-CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~tw-C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ....+|+++|+|++++.+|+.+++++++||++||+||++| |++|+.+++.|++++++|  .++++++|+.|        
T Consensus        16 ~~~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d--------   85 (167)
T 2jsy_A           16 QEVKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISAD--------   85 (167)
T ss_dssp             CCCCTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECS--------
T ss_pred             CccCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECC--------
Confidence            3468999999999999999999999999999999999999 999999999999999999  56999999998        


Q ss_pred             CHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-----CCh
Q 027311          140 DNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-----TSP  213 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-----~~~  213 (225)
                      +.+.+++|+ ++++. +||++.  |.......+.|+.....    .  ++ ..|++||||++|+|++++.|.     .+.
T Consensus        86 ~~~~~~~~~-~~~~~~~~~~~~--d~~~~~~~~~~~v~~~~----~--g~-~~p~~~lid~~G~i~~~~~g~~~~~~~~~  155 (167)
T 2jsy_A           86 LPFAQARWC-GANGIDKVETLS--DHRDMSFGEAFGVYIKE----L--RL-LARSVFVLDENGKVVYAEYVSEATNHPNY  155 (167)
T ss_dssp             SGGGTSCCG-GGSSCTTEEEEE--GGGTCHHHHHTTCBBTT----T--CS-BCCEEEEECTTSCEEEEEECSBTTSCCCS
T ss_pred             CHHHHHHHH-HhcCCCCceEee--CCchhHHHHHhCCcccc----C--Cc-eeeEEEEEcCCCcEEEEEecCCcCCCCCH
Confidence            556677787 78888 899884  41223344444221100    0  11 259999999999999998653     234


Q ss_pred             hhHHHHHHhhhC
Q 027311          214 LSIEVVLECLCC  225 (225)
Q Consensus       214 ~~l~~~l~~ll~  225 (225)
                      +++.+.|++|++
T Consensus       156 ~~l~~~l~~llk  167 (167)
T 2jsy_A          156 EKPIEAAKALVK  167 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            789999998875

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.95  E-value=2.8e-27  Score=171.55  Aligned_cols=134  Identities=17%  Similarity=0.200  Sum_probs=117.6

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI  144 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~  144 (225)
                      +|.++|+|++++.+|+.+++++++||+++|.||++||++|+.+++.+++++++++  ++.+++|++|+       +.+.+
T Consensus         1 ~~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------~~~~~   71 (136)
T 1zzo_A            1 TVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLD-------QVPAM   71 (136)
T ss_dssp             CCCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS-------CHHHH
T ss_pred             CCCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCC-------CHHHH
Confidence            4678999999999999999999999999999999999999999999999999997  69999999885       78899


Q ss_pred             HHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          145 QEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       145 ~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      ++|+ +++++ +|+++.  |... ...+.|             ++.++|+++|+|++|+++ ++.|..+.+++.+.|+++
T Consensus        72 ~~~~-~~~~~~~~~~~~--d~~~-~~~~~~-------------~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~  133 (136)
T 1zzo_A           72 QEFV-NKYPVKTFTQLA--DTDG-SVWANF-------------GVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTAL  133 (136)
T ss_dssp             HHHH-HHTTCTTSEEEE--CTTC-HHHHHT-------------TCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHH
T ss_pred             HHHH-HHcCCCceEEEE--cCCc-HHHHHc-------------CCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHH
Confidence            9998 78888 899873  4332 233333             888999999999999999 999988999999999998


Q ss_pred             hC
Q 027311          224 CC  225 (225)
Q Consensus       224 l~  225 (225)
                      ++
T Consensus       134 l~  135 (136)
T 1zzo_A          134 TS  135 (136)
T ss_dssp             C-
T ss_pred             hc
Confidence            74

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.95  E-value=2.4e-27  Score=183.10  Aligned_cols=136  Identities=17%  Similarity=0.201  Sum_probs=114.5

Q ss_pred             CCCceecCeEEeCC--CC--CeecCCcc-CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           64 QSKTSVHDFSVKDA--KG--QDVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        64 ~~g~~~p~f~l~~~--~G--~~~~l~~~-~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      ++|+++|+|++.+.  +|  +.++++++ +||++||+|| ++||++|+.+++.|++++++|++++++|++||+|      
T Consensus         1 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d------   74 (192)
T 2h01_A            1 AFQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVD------   74 (192)
T ss_dssp             CCSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESS------
T ss_pred             CCCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeC------
Confidence            37899999999999  99  99999999 9999999999 9999999999999999999999889999999998      


Q ss_pred             CCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc-----cceeEEEECCCCcEEE
Q 027311          138 PGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK-----WNFSKFLVDKEGNVVE  205 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~I~~  205 (225)
                        +.+.+++|+ +++       +.+||++.  |.. ....+.|             ++.     .+|++||||++|+|++
T Consensus        75 --~~~~~~~~~-~~~~~~~~~~~~~~~~l~--D~~-~~~~~~~-------------gv~~~~g~~~P~~~liD~~G~i~~  135 (192)
T 2h01_A           75 --SKFTHLAWK-KTPLSQGGIGNIKHTLIS--DIS-KSIARSY-------------DVLFNESVALRAFVLIDKQGVVQH  135 (192)
T ss_dssp             --CHHHHHHHH-TSCGGGTCCCSCSSEEEE--CTT-SHHHHHT-------------TCEETTTEECCEEEEECTTSBEEE
T ss_pred             --CHHHHHHHH-HhHHhhCCccCCCcCeEE--CCc-HHHHHHh-------------CCcCcCCceeeEEEEEcCCCEEEE
Confidence              678888888 666       78899884  433 3344445             555     7899999999999999


Q ss_pred             EcCCCC----ChhhHHHHHHhhh
Q 027311          206 RYAPTT----SPLSIEVVLECLC  224 (225)
Q Consensus       206 ~~~g~~----~~~~l~~~l~~ll  224 (225)
                      ++.|..    +.+++.+.|+++.
T Consensus       136 ~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          136 LLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             EEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHh
Confidence            987743    2466777777653

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.95  E-value=1.3e-27  Score=179.15  Aligned_cols=125  Identities=10%  Similarity=0.198  Sum_probs=106.6

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCC--EEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGK--LLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk--~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      .+.+|+.+|+|++.|.+|+.+++++++||  ++||+|| ++|||+|+.++|.|+++++++++++ +|++|+.|       
T Consensus         6 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d-------   77 (159)
T 2a4v_A            6 ELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSAD-------   77 (159)
T ss_dssp             CCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESC-------
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCC-------
Confidence            45799999999999999999999999887  8999987 9999999999999999999999989 99999988       


Q ss_pred             CCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccc------eeEEEECCCCcEEEEcCCCCC
Q 027311          139 GDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWN------FSKFLVDKEGNVVERYAPTTS  212 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~------P~~~lid~~G~I~~~~~g~~~  212 (225)
                       +.+.+++|+ ++++++||++.  |.+ ....+.|             ++...      |++||| ++|+|++++.|..+
T Consensus        78 -~~~~~~~~~-~~~~~~~~~l~--D~~-~~~~~~~-------------gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~  138 (159)
T 2a4v_A           78 -SVTSQKKFQ-SKQNLPYHLLS--DPK-REFIGLL-------------GAKKTPLSGSIRSHFIF-VDGKLKFKRVKISP  138 (159)
T ss_dssp             -CHHHHHHHH-HHHTCSSEEEE--CTT-CHHHHHH-------------TCBSSSSSCBCCEEEEE-ETTEEEEEEESCCH
T ss_pred             -CHHHHHHHH-HHhCCCceEEE--CCc-cHHHHHh-------------CCcccccCCccceEEEE-cCCEEEEEEccCCc
Confidence             778899998 78899999984  433 3344455             33333      489999 99999999988654


Q ss_pred             h
Q 027311          213 P  213 (225)
Q Consensus       213 ~  213 (225)
                      .
T Consensus       139 ~  139 (159)
T 2a4v_A          139 E  139 (159)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.95  E-value=1.6e-27  Score=188.44  Aligned_cols=134  Identities=10%  Similarity=0.187  Sum_probs=106.5

Q ss_pred             cccCCCceecCeEEeCC---CCCeecCCccCCCEEEEEEcc-cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDA---KGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ  136 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vlv~F~~-twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~  136 (225)
                      ..+.+|+++|+|++.++   +|+.+++++++||++||+||+ +||++|+.++|.|++++++|++++++||+||+|     
T Consensus        38 ~~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D-----  112 (222)
T 3ztl_A           38 MVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTD-----  112 (222)
T ss_dssp             --CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-----
T ss_pred             ccccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            45689999999999965   559999999999999999996 999999999999999999999989999999998     


Q ss_pred             CCCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          137 EPGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                         +.+...+|. +++       +.+|+++.  |.+ ....+.|+......      + ..+|++||||++|+|++++.|
T Consensus       113 ---~~~~~~~~~-~~~~~~~~~~~~~~~~l~--D~~-~~~~~~ygv~~~~~------g-~~~P~~~lID~~G~I~~~~~g  178 (222)
T 3ztl_A          113 ---SQYSHLAWD-NLDRKSGGLGHMKIPLLA--DRK-QEISKAYGVFDEED------G-NAFRGLFIIDPNGILRQITIN  178 (222)
T ss_dssp             ---CHHHHHHHH-HSCGGGTSCCSCSSCEEE--CSS-SHHHHHTTCBCTTT------S-SBCEEEEEECTTSEEEEEEEE
T ss_pred             ---CHHHHHHHH-HHhhhhccccccceeEEe--CCc-hHHHHHcCCeecCC------C-CccceEEEECCCCeEEEEEec
Confidence               677788887 554       88999984  443 33444452211100      1 168999999999999999877


Q ss_pred             CCCh
Q 027311          210 TTSP  213 (225)
Q Consensus       210 ~~~~  213 (225)
                      ..+.
T Consensus       179 ~~~~  182 (222)
T 3ztl_A          179 DKPV  182 (222)
T ss_dssp             CTTB
T ss_pred             CCCC
Confidence            6544

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.95  E-value=3.6e-27  Score=171.25  Aligned_cols=132  Identities=16%  Similarity=0.263  Sum_probs=115.5

Q ss_pred             ceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311           67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE  146 (225)
Q Consensus        67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~  146 (225)
                      .++|+|++++.+|+.+++++++||+++|.||++||++|+.+++.+++++++++  ++.+++|+.|+       +.+.+++
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------~~~~~~~   72 (136)
T 1lu4_A            2 DERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRA-------DVGAMQS   72 (136)
T ss_dssp             GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS-------CHHHHHH
T ss_pred             CCCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCC-------CHHHHHH
Confidence            46899999999999999999999999999999999999999999999999997  69999999985       7899999


Q ss_pred             HHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC---CCCChhhHHHHHHhh
Q 027311          147 FACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA---PTTSPLSIEVVLECL  223 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~---g~~~~~~l~~~l~~l  223 (225)
                      |+ ++++.+|+++.  |.... ..+.|             ++.++|+++++|++|+++ ++.   |..+.+++++.|+++
T Consensus        73 ~~-~~~~~~~~~~~--d~~~~-~~~~~-------------~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           73 FV-SKYNLNFTNLN--DADGV-IWARY-------------NVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             HH-HHHTCCSEEEE--CTTSH-HHHHT-------------TCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred             HH-HHcCCCceEEE--CCchh-HHHhc-------------CCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHH
Confidence            98 78899999883  43322 33333             888899999999999999 998   988999999999998


Q ss_pred             hC
Q 027311          224 CC  225 (225)
Q Consensus       224 l~  225 (225)
                      ++
T Consensus       135 l~  136 (136)
T 1lu4_A          135 TS  136 (136)
T ss_dssp             --
T ss_pred             hC
Confidence            74

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.95  E-value=2.1e-27  Score=199.00  Aligned_cols=145  Identities=19%  Similarity=0.250  Sum_probs=126.1

Q ss_pred             cccCCCceecCeE-----EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCC
Q 027311           61 MASQSKTSVHDFS-----VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGA  135 (225)
Q Consensus        61 ~~~~~g~~~p~f~-----l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~  135 (225)
                      ....+|.++|+|+     +.+.+|+.+++++++||++||+||++||++|+.++|.|++++++|++++++|++|++|.+. 
T Consensus        49 ~~l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~-  127 (352)
T 2hyx_A           49 AQLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYA-  127 (352)
T ss_dssp             SSCCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSG-
T ss_pred             cccCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCccc-
Confidence            4568999999999     9999999999999999999999999999999999999999999999888999999987421 


Q ss_pred             CCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhh
Q 027311          136 QEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLS  215 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~  215 (225)
                       ..++.+++++|+ ++++++||++  .|.... ..+.|             ++.++|++||||++|+|++++.|..+.++
T Consensus       128 -~~d~~~~~~~~~-~~~~l~fpv~--~D~~~~-l~~~y-------------gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~  189 (352)
T 2hyx_A          128 -FEKVPGNVAKGA-ANLGISYPIA--LDNNYA-TWTNY-------------RNRYWPAEYLIDATGTVRHIKFGEGDYNV  189 (352)
T ss_dssp             -GGGCHHHHHHHH-HHHTCCSCEE--ECTTSH-HHHHT-------------TCCEESEEEEECTTSBEEEEEESBCCHHH
T ss_pred             -ccCCHHHHHHHH-HHcCCCccEE--eCCcHH-HHHHc-------------CCCccCEEEEEeCCCeEEEEEcCCCCHHH
Confidence             234789999999 7889999987  343322 33333             88899999999999999999999888999


Q ss_pred             HHHHHHhhh
Q 027311          216 IEVVLECLC  224 (225)
Q Consensus       216 l~~~l~~ll  224 (225)
                      +++.|+++|
T Consensus       190 l~~~I~~lL  198 (352)
T 2hyx_A          190 TETLVRQLL  198 (352)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999886

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.95  E-value=7.4e-27  Score=184.30  Aligned_cols=138  Identities=12%  Similarity=0.147  Sum_probs=115.0

Q ss_pred             ccCCCceecCeEEeC---CCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKD---AKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~---~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      .+.+|+++|+|++.+   .+|+.+++++++||++||+|| ++|||+|+.+++.|++++++|++++++|++|++|      
T Consensus        26 ~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D------   99 (220)
T 1zye_A           26 APAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD------   99 (220)
T ss_dssp             -CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS------
T ss_pred             cccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence            457999999999985   578999999999999999999 9999999999999999999999889999999998      


Q ss_pred             CCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccc------cceeEEEECCCCcEE
Q 027311          138 PGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK------WNFSKFLVDKEGNVV  204 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~I~  204 (225)
                        +.+..++|+ +++       +.+||++.  |.+ ....+.|             ++.      .+|++||||++|+|+
T Consensus       100 --~~~~~~~~~-~~~~~~~g~~~~~fp~l~--D~~-~~i~~~y-------------gv~~~~~g~~~P~~~liD~~G~I~  160 (220)
T 1zye_A          100 --SHFSHLAWI-NTPRKNGGLGHMNIALLS--DLT-KQISRDY-------------GVLLEGPGLALRGLFIIDPNGVIK  160 (220)
T ss_dssp             --CHHHHHHHH-TSCGGGTCCCSCSSEEEE--CTT-SHHHHHT-------------TCEETTTTEECEEEEEECTTSBEE
T ss_pred             --CHHHHHHHH-HHHHHhCCCcCCceEEEE--CCc-HHHHHHh-------------CCeecCCCcccceEEEECCCCEEE
Confidence              677888887 555       77899884  433 3344445             454      789999999999999


Q ss_pred             EEcCCCC----ChhhHHHHHHhhh
Q 027311          205 ERYAPTT----SPLSIEVVLECLC  224 (225)
Q Consensus       205 ~~~~g~~----~~~~l~~~l~~ll  224 (225)
                      +++.|..    +.+++.+.|++|+
T Consensus       161 ~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          161 HLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             EEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCHHHHHHHHHHhh
Confidence            9887653    3467888887764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.94  E-value=7.2e-27  Score=177.94  Aligned_cols=144  Identities=11%  Similarity=0.080  Sum_probs=108.7

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccC-CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~tw-C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+.+|+++|+|++++.+|+.+++++++||++||+||++| |++|+.++|.|++++++   +++++++|++|        
T Consensus        16 ~~l~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D--------   84 (175)
T 1xvq_A           16 ELPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSKD--------   84 (175)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESS--------
T ss_pred             CCCCcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEECC--------
Confidence            3457999999999999999999999999999999999999 99999999999999998   56999999997        


Q ss_pred             CHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC--CCChhhH
Q 027311          140 DNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP--TTSPLSI  216 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g--~~~~~~l  216 (225)
                      +.+.+++|+ +++++ +|+++.  |.+ ....+.|+...... ...  + ...|++||||++|+|++++.|  ..+..++
T Consensus        85 ~~~~~~~~~-~~~~~~~~~~l~--D~~-~~~~~~~gv~~~~~-~~~--g-~~~p~~~lid~~G~I~~~~~g~~~~~~~~~  156 (175)
T 1xvq_A           85 LPFAQKRFC-GAEGTENVMPAS--AFR-DSFGEDYGVTIADG-PMA--G-LLARAIVVIGADGNVAYTELVPEIAQEPNY  156 (175)
T ss_dssp             CHHHHTTCC-------CEEEEE--CTT-SSHHHHTTCBBCSS-TTT--T-SBCSEEEEECTTSBEEEEEECSBTTCCCCH
T ss_pred             CHHHHHHHH-HHcCCCCceEee--CCH-HHHHHHhCCccccc-ccC--C-cccceEEEECCCCeEEEEEECCCcCCCCCH
Confidence            677888888 77888 899884  443 33445553322110 001  1 235999999999999999864  3344467


Q ss_pred             HHHHHhh
Q 027311          217 EVVLECL  223 (225)
Q Consensus       217 ~~~l~~l  223 (225)
                      ++.|+++
T Consensus       157 ~~~l~~l  163 (175)
T 1xvq_A          157 EAALAAL  163 (175)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777665

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.94  E-value=6.3e-27  Score=186.93  Aligned_cols=146  Identities=11%  Similarity=0.155  Sum_probs=113.5

Q ss_pred             cccccCCCceecCeEEeCC---CCCeecCCccCCCEEEEEEcc-cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCC
Q 027311           59 HTMASQSKTSVHDFSVKDA---KGQDVDLSIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFG  134 (225)
Q Consensus        59 ~~~~~~~g~~~p~f~l~~~---~G~~~~l~~~~gk~vlv~F~~-twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~  134 (225)
                      .+..+.+|+++|+|++.+.   +|+.++|++++||++||+||+ +||++|+.+++.|++++++|+++|++|++||+|   
T Consensus        44 ~~~~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D---  120 (240)
T 3qpm_A           44 HLSKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVD---  120 (240)
T ss_dssp             EECSCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESS---
T ss_pred             ccCcCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECC---
Confidence            3455689999999998754   467999999999999999998 999999999999999999999999999999998   


Q ss_pred             CCCCCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311          135 AQEPGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY  207 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~  207 (225)
                           +.+...+|+ +++       +++||++.  |.+ ....+.|+......      + ..+|++||||++|+|++++
T Consensus       121 -----~~~~~~~~~-~~~~~~~~~~~~~fp~l~--D~~-~~v~~~ygv~~~~~------g-~~~p~~flID~~G~I~~~~  184 (240)
T 3qpm_A          121 -----SQFTHLAWI-ITPRKQGGLGPMKIPLLS--DLT-HQISKDYGVYLEDQ------G-HTLRGLFIIDEKGVLRQIT  184 (240)
T ss_dssp             -----CHHHHHHHH-HSCGGGTCCCSCSSCEEE--CTT-SHHHHHTTCEETTT------T-EECEEEEEECTTSBEEEEE
T ss_pred             -----CHHHHHHHH-HHHHhhcCCCCCceeEEe--Cch-HHHHHHhCCccccC------C-CccceEEEEcCCCeEEEEE
Confidence                 678888887 554       78999984  444 34455553322111      1 1579999999999999997


Q ss_pred             CCCCC----hhhHHHHHHhh
Q 027311          208 APTTS----PLSIEVVLECL  223 (225)
Q Consensus       208 ~g~~~----~~~l~~~l~~l  223 (225)
                      .+..+    .+++.+.|+++
T Consensus       185 ~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          185 MNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             EECTTBCCCHHHHHHHHHHH
T ss_pred             ecCCCCCCCHHHHHHHHHHh
Confidence            66433    34555555543

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.94  E-value=2.6e-27  Score=178.29  Aligned_cols=133  Identities=15%  Similarity=0.146  Sum_probs=108.3

Q ss_pred             cCCCceecCeEEe--CCCC--CeecCCc-cCCCEEEEEEc-ccCCCCCh-HhHHHHHHHHHHHhcCCeE-EEEEecCCCC
Q 027311           63 SQSKTSVHDFSVK--DAKG--QDVDLSI-YKGKLLLIVNV-ASQCGLTN-SNYTELSQLYDKYKNQGLE-ILAFPCNQFG  134 (225)
Q Consensus        63 ~~~g~~~p~f~l~--~~~G--~~~~l~~-~~gk~vlv~F~-~twC~~C~-~~~~~l~~l~~~~~~~~~~-iv~Is~d~~~  134 (225)
                      +.+|+.+|+|++.  +.+|  +.+++++ ++||++||+|| ++|||+|. .++|.|++++++++++|++ |++||.|   
T Consensus         4 ~~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d---   80 (162)
T 1tp9_A            4 IAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN---   80 (162)
T ss_dssp             CCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS---
T ss_pred             CCCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC---
Confidence            4789999999986  8999  9999999 89999999999 89999999 9999999999999988999 9999988   


Q ss_pred             CCCCCCHHHHHHHHHhhcCC--CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          135 AQEPGDNEQIQEFACTRFKA--EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                           +.+.+++|+ +++++  +||++.  |.+ ....+.|+......  ..|.++.+.|++|||| +|+|++.+.+.
T Consensus        81 -----~~~~~~~~~-~~~~~~~~~~~l~--D~~-~~~~~~~gv~~~~~--~~g~~~~~~p~~~vid-~G~i~~~~~~~  146 (162)
T 1tp9_A           81 -----DPFVMKAWA-KSYPENKHVKFLA--DGS-ATYTHALGLELDLQ--EKGLGTRSRRFALLVD-DLKVKAANIEG  146 (162)
T ss_dssp             -----CHHHHHHHH-HTCTTCSSEEEEE--CTT-SHHHHHTTCEEEET--TTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             -----CHHHHHHHH-HhcCCCCCeEEEE--CCC-chHHHHcCcccccc--cCCCCccceeEEEEEE-CCEEEEEEeeC
Confidence                 778899998 78888  899884  544 33444554321110  0111234589999999 99999998776

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.94  E-value=5.7e-27  Score=175.30  Aligned_cols=138  Identities=20%  Similarity=0.325  Sum_probs=114.9

Q ss_pred             cccccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           59 HTMASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        59 ~~~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      ....+.+|+.+|+|++.+.+|+.+++++++||++||.||++||++|+.+++.|+++++++++.++.+++|+.|.      
T Consensus        11 ~~~~~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~------   84 (158)
T 3hdc_A           11 DAPLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK------   84 (158)
T ss_dssp             CSCCCCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS------
T ss_pred             CCcccCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH------
Confidence            34456899999999999999999999999999999999999999999999999999999998889999999873      


Q ss_pred             CCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCCh--hhH
Q 027311          139 GDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP--LSI  216 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~--~~l  216 (225)
                          ++++|. ++++.+|+++.  |..+ ...+.|             ++.++|++||||++|+|++++.|..+.  .++
T Consensus        85 ----~~~~~~-~~~~~~~~~~~--d~~~-~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~  143 (158)
T 3hdc_A           85 ----RFPEKY-RRAPVSFNFLS--DATG-QVQQRY-------------GANRLPDTFIVDRKGIIRQRVTGGIEWDAPKV  143 (158)
T ss_dssp             ----SCCGGG-GGCCCSCEEEE--CTTS-HHHHHT-------------TCCSSSEEEEECTTSBEEEEEESCCCTTSHHH
T ss_pred             ----HHHHHH-HHcCCCceEEE--CchH-HHHHHh-------------CCCCcceEEEEcCCCCEEEEEeCCCccchHHH
Confidence                345566 78899999884  4332 233334             888999999999999999999987654  456


Q ss_pred             HHHHHhh
Q 027311          217 EVVLECL  223 (225)
Q Consensus       217 ~~~l~~l  223 (225)
                      .+.+++.
T Consensus       144 ~~~~~~~  150 (158)
T 3hdc_A          144 VSYLKSL  150 (158)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            6655543

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.94  E-value=2.1e-26  Score=166.85  Aligned_cols=136  Identities=20%  Similarity=0.311  Sum_probs=115.1

Q ss_pred             eecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHH
Q 027311           68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEF  147 (225)
Q Consensus        68 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~  147 (225)
                      ++|+|++++.+|+.+++++++||++||.||++||++|+.+++.+++++++++ .++.+++|+.+..  ...++.+.+.+|
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~v~i~~~~~--~~~~~~~~~~~~   77 (138)
T 4evm_A            1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG-DDYVVLTVVSPGH--KGEQSEADFKNW   77 (138)
T ss_dssp             CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT-TTEEEEEEECTTS--TTCCCHHHHHHH
T ss_pred             CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC-CCcEEEEEEcCCC--CchhhHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999965 4599999965432  234588999999


Q ss_pred             HHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          148 ACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       148 ~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      . ++++. +|+++  .|... ...+.|             ++.++|+++|+|++|+|++++.|..+.+++.+.|+++
T Consensus        78 ~-~~~~~~~~~~~--~d~~~-~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           78 Y-KGLDYKNLPVL--VDPSG-KLLETY-------------GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             H-TTCCCTTCCEE--ECTTC-HHHHHT-------------TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             H-hhcCCCCeeEE--ECcch-HHHHHc-------------CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            8 77788 89987  34333 233333             8889999999999999999999999999999999875

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.94  E-value=2.1e-26  Score=185.14  Aligned_cols=145  Identities=9%  Similarity=0.129  Sum_probs=114.2

Q ss_pred             ccccCCCceecCeEEeC---CCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCC
Q 027311           60 TMASQSKTSVHDFSVKD---AKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGA  135 (225)
Q Consensus        60 ~~~~~~g~~~p~f~l~~---~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~  135 (225)
                      ...+.+|+++|+|++.+   .+|+.++|++++||++||+|| ++||++|..+++.|++++++|+++|++||+||+|    
T Consensus        59 ~~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D----  134 (254)
T 3tjj_A           59 LSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVD----  134 (254)
T ss_dssp             CCCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS----
T ss_pred             ccccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCC----
Confidence            45568999999999774   467899999999999999999 9999999999999999999999999999999998    


Q ss_pred             CCCCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311          136 QEPGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~  208 (225)
                          +.+...+|+ +++       +++||++.  |.+ ....+.|+......      + ..+|++||||++|+|++++.
T Consensus       135 ----~~~~~~~~~-~~~~~~~g~~~~~fp~l~--D~~-~~va~~ygv~~~~~------g-~~~p~tflID~~G~I~~~~~  199 (254)
T 3tjj_A          135 ----SQFTHLAWI-NTPRRQGGLGPIRIPLLS--DLT-HQISKDYGVYLEDS------G-HTLRGLFIIDDKGILRQITL  199 (254)
T ss_dssp             ----CHHHHHHHH-TSCGGGTSCCSCSSCEEE--CTT-SHHHHHHTCEETTT------T-EECEEEEEECTTSBEEEEEE
T ss_pred             ----CHHHHHHHH-HHHHHhcCCcccccceee--CcH-HHHHHHcCCccccC------C-CccceEEEECCCCeEEEEEe
Confidence                778888887 554       78999984  544 34555564332111      1 24799999999999999977


Q ss_pred             CCCC----hhhHHHHHHhh
Q 027311          209 PTTS----PLSIEVVLECL  223 (225)
Q Consensus       209 g~~~----~~~l~~~l~~l  223 (225)
                      +..+    .+++.+.|+++
T Consensus       200 ~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          200 NDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             ECTTCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHhh
Confidence            6432    34555555543

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=8.2e-29  Score=185.37  Aligned_cols=140  Identities=19%  Similarity=0.295  Sum_probs=115.4

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHH-HHHHHh-cCCeEEEEEecCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQ-LYDKYK-NQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~-l~~~~~-~~~~~iv~Is~d~~~~~~~~  139 (225)
                      .+.+|+.+|+|++++.+|+.+++++++||++||+||++||++|+.+++.|++ ++++++ +.++++++|++|+       
T Consensus         6 ~l~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~-------   78 (159)
T 2ls5_A            6 IVRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDE-------   78 (159)
Confidence            4578999999999999999999999999999999999999999999999998 999998 6789999999884       


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      +.+.+++|. ++++.+||++.  |..+. ..+.|+.           .+.++|+++|||++|+|++++.| .+++++++.
T Consensus        79 ~~~~~~~~~-~~~~~~~~~~~--d~~~~-~~~~~~~-----------~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~  142 (159)
T 2ls5_A           79 PLEKVLAFA-KSTGVTYPLGL--DPGAD-IFAKYAL-----------RDAGITRNVLIDREGKIVKLTRL-YNEEEFASL  142 (159)
Confidence            456677887 78899999884  43333 3333411           25668999999999999999887 456677777


Q ss_pred             HHhhh
Q 027311          220 LECLC  224 (225)
Q Consensus       220 l~~ll  224 (225)
                      |+++.
T Consensus       143 l~~l~  147 (159)
T 2ls5_A          143 VQQIN  147 (159)
Confidence            77654

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.94  E-value=1.2e-26  Score=175.07  Aligned_cols=137  Identities=18%  Similarity=0.232  Sum_probs=116.4

Q ss_pred             cccCCCceecCeEEeCC--CCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDA--KGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~--~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      ....+|+++|+|++.+.  +|+.++++++ +||++||+||++||++|+.++|.+++++++    ++.+++|++|+     
T Consensus        20 ~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~-----   90 (168)
T 2b1k_A           20 ESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKD-----   90 (168)
T ss_dssp             CCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEESC-----
T ss_pred             cccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEECCC-----
Confidence            34579999999999999  9999999985 999999999999999999999999998875    69999999885     


Q ss_pred             CCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 027311          138 PGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE  217 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~  217 (225)
                        +.+.+++|+ ++++.+|+.+. .|... .....|             ++.++|++||||++|+|++++.|..+.+++.
T Consensus        91 --~~~~~~~~~-~~~~~~~~~~~-~d~~~-~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~  152 (168)
T 2b1k_A           91 --DRQKAISWL-KELGNPYALSL-FDGDG-MLGLDL-------------GVYGAPETFLIDGNGIIRYRHAGDLNPRVWE  152 (168)
T ss_dssp             --CHHHHHHHH-HHHCCCCSEEE-EETTC-HHHHHH-------------TCCSSSEEEEECTTSBEEEEEESCCCHHHHH
T ss_pred             --ChHHHHHHH-HHcCCCCceee-ECcch-HHHHHc-------------CccccCEEEEECCCCeEEEEEeCCCCHHHHH
Confidence              778899998 78899998532 34332 233334             8888999999999999999999988888888


Q ss_pred             HHHHhhh
Q 027311          218 VVLECLC  224 (225)
Q Consensus       218 ~~l~~ll  224 (225)
                      +.|++++
T Consensus       153 ~~l~~~l  159 (168)
T 2b1k_A          153 EEIKPLW  159 (168)
T ss_dssp             HTTHHHH
T ss_pred             HHHHHHH
Confidence            8888775

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.94  E-value=1.4e-26  Score=175.10  Aligned_cols=133  Identities=11%  Similarity=0.171  Sum_probs=106.4

Q ss_pred             cCCCceecCeEEe-CCCCCeecCCcc-CCCEEEEEEc-ccCCCCChH-hHHHHHHHHHHHhcCCe-EEEEEecCCCCCCC
Q 027311           63 SQSKTSVHDFSVK-DAKGQDVDLSIY-KGKLLLIVNV-ASQCGLTNS-NYTELSQLYDKYKNQGL-EILAFPCNQFGAQE  137 (225)
Q Consensus        63 ~~~g~~~p~f~l~-~~~G~~~~l~~~-~gk~vlv~F~-~twC~~C~~-~~~~l~~l~~~~~~~~~-~iv~Is~d~~~~~~  137 (225)
                      +.+|+++|+|+++ +.+|+.++|+++ +||++||+|| ++|||+|.. ++|.|++++++++++|+ +|++||.|      
T Consensus         3 l~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d------   76 (167)
T 2wfc_A            3 IKEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVN------   76 (167)
T ss_dssp             CCTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESS------
T ss_pred             CCCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCC------
Confidence            4789999999999 999999999998 9999988886 999999999 99999999999999999 99999987      


Q ss_pred             CCCHHHHHHHHHhhcCCC--cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          138 PGDNEQIQEFACTRFKAE--FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                        +.+.+++|+ ++++++  ||++.  |.++ ...+.|+...... ...| .....|++||| ++|+|++++.+.
T Consensus        77 --~~~~~~~~~-~~~~~~~~fp~l~--D~~~-~~~~~~gv~~~~~-~~~g-~~~~~p~t~lI-~~G~I~~~~~~~  142 (167)
T 2wfc_A           77 --DSFVMDAWG-KAHGADDKVQMLA--DPGG-AFTKAVDMELDLS-AVLG-NVRSKRYSLVI-EDGVVTKVNVEP  142 (167)
T ss_dssp             --CHHHHHHHH-HHTTCTTTSEEEE--CTTS-HHHHHTTCEECCH-HHHS-SCEECCEEEEE-ETTEEEEEEECT
T ss_pred             --CHHHHHHHH-HhcCCCcceEEEE--CCCC-cHHHHcCCccccc-cccC-cccceEEEEEE-eCCEEEEEEecC
Confidence              678889998 778888  99984  5433 3444453321100 0001 12345999999 999999997764

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.94  E-value=1.7e-26  Score=175.61  Aligned_cols=147  Identities=17%  Similarity=0.204  Sum_probs=114.1

Q ss_pred             cCCCceecCeEEe-CCCCCeecCCc-cCCCEEEE-EEcccCCCCCh-HhHHHHHHHHHHHhcCCeEEEE-EecCCCCCCC
Q 027311           63 SQSKTSVHDFSVK-DAKGQDVDLSI-YKGKLLLI-VNVASQCGLTN-SNYTELSQLYDKYKNQGLEILA-FPCNQFGAQE  137 (225)
Q Consensus        63 ~~~g~~~p~f~l~-~~~G~~~~l~~-~~gk~vlv-~F~~twC~~C~-~~~~~l~~l~~~~~~~~~~iv~-Is~d~~~~~~  137 (225)
                      ..+|+++|+|++. +.+|+.++|++ ++||++|| +||++|||+|. .|+|.|++++++|+++|+++|+ ||.|      
T Consensus        15 ~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D------   88 (173)
T 3mng_A           15 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN------   88 (173)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS------
T ss_pred             CCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCC------
Confidence            4799999999999 99999999999 59996655 55699999999 5999999999999999999997 9988      


Q ss_pred             CCCHHHHHHHHHhhcCCC--cceeeeecCCCCCchhhhhhccccCC-CCCCCccccceeEEEECCCCcEEEEcCCCC---
Q 027311          138 PGDNEQIQEFACTRFKAE--FPIFDKVDVNGDNAAPLYKHLKSSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTT---  211 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~P~~~lid~~G~I~~~~~g~~---  211 (225)
                        +.+.+++|+ ++++.+  ||++  .|.++ ...+.|+....... +..| +....|++|||| +|+|++.+.+..   
T Consensus        89 --~~~~~~~f~-~~~~~~~~fp~l--~D~~~-~va~~yGv~~~~~~~~~~g-~~~~~r~tfvID-dG~I~~~~v~~~~~g  160 (173)
T 3mng_A           89 --DAFVTGEWG-RAHKAEGKVRLL--ADPTG-AFGKETDLLLDDSLVSIFG-NRRLKRFSMVVQ-DGIVKALNVEPDGTG  160 (173)
T ss_dssp             --CHHHHHHHH-HHTTCTTTCEEE--ECTTC-HHHHHHTCBCCSTTHHHHS-SCCBCCEEEEEE-TTEEEEEEECTTSSC
T ss_pred             --CHHHHHHHH-HHhCCCCceEEE--ECCCh-HHHHHhCCCcccccccccC-CcceEEEEEEEE-CCEEEEEEEeCCCCC
Confidence              788899998 788887  9998  45443 34555654322100 0011 234679999999 999999988754   


Q ss_pred             -ChhhHHHHHHhh
Q 027311          212 -SPLSIEVVLECL  223 (225)
Q Consensus       212 -~~~~l~~~l~~l  223 (225)
                       +..+.+..|++|
T Consensus       161 ~~~~~~~~vl~~l  173 (173)
T 3mng_A          161 LTCSLAPNIISQL  173 (173)
T ss_dssp             SSTTSHHHHHHHC
T ss_pred             cchHHHHHHHHhC
Confidence             345666666653

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.94  E-value=9.8e-27  Score=178.57  Aligned_cols=148  Identities=17%  Similarity=0.158  Sum_probs=115.0

Q ss_pred             cccCCCceecCeEEeCC--CC-CeecCCc-cCCCEE-EEEEcccCCCCChH-hHHHHHHHHHHHhcCCeE-EEEEecCCC
Q 027311           61 MASQSKTSVHDFSVKDA--KG-QDVDLSI-YKGKLL-LIVNVASQCGLTNS-NYTELSQLYDKYKNQGLE-ILAFPCNQF  133 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~--~G-~~~~l~~-~~gk~v-lv~F~~twC~~C~~-~~~~l~~l~~~~~~~~~~-iv~Is~d~~  133 (225)
                      +.+++|+++|+|++.+.  +| +.++|++ ++||++ |++||++|||+|+. |+|.|++++++|+++|++ |++||.|  
T Consensus        24 ~~l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d--  101 (184)
T 3uma_A           24 MTIAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVN--  101 (184)
T ss_dssp             SCCCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS--
T ss_pred             CcCCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECC--
Confidence            34689999999999998  99 9999999 899955 55677999999999 899999999999999999 9999998  


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCC--cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          134 GAQEPGDNEQIQEFACTRFKAE--FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                            +.+.+++|+ ++++++  ||++.  |.++ ...+.|+......  ..|.++...|++|||| +|+|++.+.+..
T Consensus       102 ------~~~~~~~f~-~~~~~~~~fp~l~--D~~~-~va~~yGv~~~~~--~~g~g~~~~r~tfiId-dG~I~~~~~~~~  168 (184)
T 3uma_A          102 ------DLHVMGAWA-THSGGMGKIHFLS--DWNA-AFTKAIGMEIDLS--AGTLGIRSKRYSMLVE-DGVVKALNIEES  168 (184)
T ss_dssp             ------CHHHHHHHH-HHHTCTTTSEEEE--CTTC-HHHHHTTCEEEEG--GGTCEEEECCEEEEEE-TTEEEEEEECSS
T ss_pred             ------CHHHHHHHH-HHhCCCCceEEEE--cCch-HHHHHcCCceecc--ccCCcccceeEEEEEC-CCEEEEEEEeCC
Confidence                  778889998 788998  99994  5443 3455564432211  0111345678999996 999999987643


Q ss_pred             ----ChhhHHHHHHhh
Q 027311          212 ----SPLSIEVVLECL  223 (225)
Q Consensus       212 ----~~~~l~~~l~~l  223 (225)
                          +....++.|++|
T Consensus       169 ~g~~~~~~~~~vL~~L  184 (184)
T 3uma_A          169 PGQATASGAAAMLELL  184 (184)
T ss_dssp             TTCCSTTSHHHHHHHC
T ss_pred             CCCCcCCCHHHHHhhC
Confidence                335667766654

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.94  E-value=7.7e-27  Score=175.13  Aligned_cols=140  Identities=17%  Similarity=0.186  Sum_probs=116.6

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      ..|+.+|  ++++.+|+.+++++++||++||+||++||++|+.++|.|++++++|+.+++++++|++|..  ...++.++
T Consensus        15 ~~~~~~p--~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~--~~~~~~~~   90 (164)
T 2h30_A           15 TVPHTMS--TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGF--LHEKKDGE   90 (164)
T ss_dssp             CHHHHHT--TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTS--TTCCCTTH
T ss_pred             ccCCcCC--ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCC--ccccCHHH
Confidence            3455556  7899999999999999999999999999999999999999999999988999999999753  23346778


Q ss_pred             HHHHHHhhcCCC-cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          144 IQEFACTRFKAE-FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       144 ~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                      +.+|. ++++.. +++.  .|... ...+.|             ++.++|++||||++|++++++.|..+.+++++.|++
T Consensus        91 ~~~~~-~~~~~~~~~~~--~d~~~-~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  153 (164)
T 2h30_A           91 FQKWY-AGLNYPKLPVV--TDNGG-TIAQNL-------------NISVYPSWALIGKDGDVQRIVKGSINEAQALALIRN  153 (164)
T ss_dssp             HHHHH-TTSCCTTSCEE--ECTTC-HHHHHT-------------TCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHC
T ss_pred             HHHHH-HhCCCCcceEE--EcCch-HHHHHc-------------CCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHH
Confidence            88887 666766 6765  34332 233333             888999999999999999999999999999999998


Q ss_pred             hh
Q 027311          223 LC  224 (225)
Q Consensus       223 ll  224 (225)
                      ++
T Consensus       154 ~~  155 (164)
T 2h30_A          154 PN  155 (164)
T ss_dssp             TT
T ss_pred             HH
Confidence            76

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.94  E-value=1.8e-26  Score=183.30  Aligned_cols=149  Identities=13%  Similarity=0.196  Sum_probs=116.4

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCC-EEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      +.+|+.+|+|++.+.+| .+++++++|| ++||+|| ++|||+|..|++.|++++++|+++|++||+||+|        +
T Consensus         3 l~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D--------~   73 (233)
T 2v2g_A            3 ITLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCD--------N   73 (233)
T ss_dssp             CCTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS--------C
T ss_pred             CCCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCC--------C
Confidence            46899999999999999 8999999998 9999998 9999999999999999999999999999999998        6


Q ss_pred             HHHHHHHHHh-----hc--CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--
Q 027311          141 NEQIQEFACT-----RF--KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--  211 (225)
Q Consensus       141 ~~~~~~~~~~-----~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--  211 (225)
                      .+..++|+..     ++  +++||++.  |.++ ...+.|+..........|+ ...+|++||||++|+|++.+.+..  
T Consensus        74 ~~~~~~~~~~i~~~~~~~~~~~fpil~--D~~~-~va~~ygv~~~~~~~~~g~-~~~~p~~fiID~~G~I~~~~~~~~~~  149 (233)
T 2v2g_A           74 VADHKEWSEDVKCLSGVKGDMPYPIIA--DETR-ELAVKLGMVDPDERTSTGM-PLTCRAVFIIGPDKKLKLSILYPATT  149 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSCSSCEEE--CTTC-HHHHHTTCEEEEEECTTCC-EEECEEEEEECTTSBEEEEEEECTTB
T ss_pred             HHHHHHHHHHHHHhhCcccCCceEEEE--CChH-HHHHHhCCcCcccccCCCc-ccccceEEEECCCCEEEEEEecCCCC
Confidence            7777888732     56  78999984  4433 3455665432211000011 225799999999999999876533  


Q ss_pred             --ChhhHHHHHHhhh
Q 027311          212 --SPLSIEVVLECLC  224 (225)
Q Consensus       212 --~~~~l~~~l~~ll  224 (225)
                        +.+++.+.|++|.
T Consensus       150 gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          150 GRNFSEILRVIDSLQ  164 (233)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence              4567888887763

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.94  E-value=1.3e-26  Score=172.31  Aligned_cols=137  Identities=19%  Similarity=0.277  Sum_probs=113.2

Q ss_pred             ccCCCceecCeEEeCCCC--------CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCC
Q 027311           62 ASQSKTSVHDFSVKDAKG--------QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQF  133 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G--------~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~  133 (225)
                      ...+|+.+|+|++++.+|        +.+++++++||++||.||++||++|+.+++.|++++++   .++.+++|++|+ 
T Consensus         7 ~~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~~~-   82 (156)
T 1kng_A            7 SALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---KRFQLVGINYKD-   82 (156)
T ss_dssp             -----CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---TTSEEEEEEESC-
T ss_pred             hHHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc---CCeEEEEEECCC-
Confidence            347899999999999999        99999999999999999999999999999999999876   349999999885 


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCCh
Q 027311          134 GAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP  213 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~  213 (225)
                            +.+.+++|+ ++++.+|+.+. .|.. ....+.|             ++.++|++|+||++|++++++.|..+.
T Consensus        83 ------~~~~~~~~~-~~~~~~~~~~~-~d~~-~~~~~~~-------------~v~~~P~~~~id~~G~i~~~~~g~~~~  140 (156)
T 1kng_A           83 ------AADNARRFL-GRYGNPFGRVG-VDAN-GRASIEW-------------GVYGVPETFVVGREGTIVYKLVGPITP  140 (156)
T ss_dssp             ------CHHHHHHHH-HHHCCCCSEEE-EETT-SHHHHHT-------------TCCSSCEEEEECTTSBEEEEEESCCCH
T ss_pred             ------CHHHHHHHH-HHcCCCCceee-eCch-hHHHHhc-------------CcCccCeEEEEcCCCCEEEEEeCCCCH
Confidence                  788999998 78899999432 3433 2233333             888999999999999999999998888


Q ss_pred             hhHHHHHHhhh
Q 027311          214 LSIEVVLECLC  224 (225)
Q Consensus       214 ~~l~~~l~~ll  224 (225)
                      +++.+.|++++
T Consensus       141 ~~l~~~l~~~l  151 (156)
T 1kng_A          141 DNLRSVLLPQM  151 (156)
T ss_dssp             HHHHHTHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887765

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.93  E-value=7.9e-26  Score=178.79  Aligned_cols=148  Identities=15%  Similarity=0.158  Sum_probs=114.6

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCC-E-EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGK-L-LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~-vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      +.+|+.+|+|++.+.+| .+++++++|| + +|++||++|||+|..+++.|++++++|+++|++||+||+|        +
T Consensus         5 l~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D--------~   75 (224)
T 1prx_A            5 LLLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSID--------S   75 (224)
T ss_dssp             CCTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------C
T ss_pred             CCCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCC--------C
Confidence            46899999999999999 9999999998 4 5666789999999999999999999999999999999998        6


Q ss_pred             HHHHHHHHHhh----------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          141 NEQIQEFACTR----------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       141 ~~~~~~~~~~~----------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                      .+..++|+ ++          ++++||++.  |.++ ...+.|+.......+..|. ...+|++||||++|+|++.+.+.
T Consensus        76 ~~~~~~~~-~~i~~~~~~~~~~~~~fpil~--D~~~-~va~~ygv~~~~~~~~~g~-~~~~p~~fiID~~G~I~~~~~~~  150 (224)
T 1prx_A           76 VEDHLAWS-KDINAYNSEEPTEKLPFPIID--DRNR-ELAILLGMLDPAEKDEKGM-PVTARVVFVFGPDKKLKLSILYP  150 (224)
T ss_dssp             HHHHHHHH-HHHHHHTTSCCCSCCSSCEEE--CTTC-HHHHHTTSSCSCTTCSSSC-CTTCCEEEEECTTSBEEEEEECC
T ss_pred             HHHHHHHH-HHHHHhhCcccccCcCcceee--cCch-HHHHHhCCCCcccccCCCc-cccceEEEEECCCCEEEEEEecC
Confidence            67777777 43          789999984  4433 3455565443211111111 23479999999999999998653


Q ss_pred             C----ChhhHHHHHHhhh
Q 027311          211 T----SPLSIEVVLECLC  224 (225)
Q Consensus       211 ~----~~~~l~~~l~~ll  224 (225)
                      .    +.+++.+.|++|.
T Consensus       151 ~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          151 ATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             TTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            3    4677888887764

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.93  E-value=4.5e-26  Score=179.70  Aligned_cols=149  Identities=18%  Similarity=0.238  Sum_probs=113.9

Q ss_pred             cCCCceecCeEEeCC--CCCeecCCccCCC-EE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDA--KGQDVDLSIYKGK-LL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~--~G~~~~l~~~~gk-~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      +.+|+.+|+|++.+.  +| .+++++++|| ++ |++||++|||+|..|++.|++++++|+++|+++|+||+|       
T Consensus         3 l~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D-------   74 (220)
T 1xcc_A            3 YHLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCN-------   74 (220)
T ss_dssp             CCTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESS-------
T ss_pred             CCCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-------
Confidence            478999999999999  99 8999999998 54 445689999999999999999999999999999999998       


Q ss_pred             CCHHHHHHHHH------hhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC--
Q 027311          139 GDNEQIQEFAC------TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT--  210 (225)
Q Consensus       139 ~~~~~~~~~~~------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~--  210 (225)
                       +.+..++|..      .+++++||++.  |.++ ...+.|+..........|+ ...+|++||||++|+|++.+.+.  
T Consensus        75 -~~~~~~~~~~~i~~~~~~~~~~fpil~--D~~~-~va~~ygv~~~~~~~~~g~-~~~~p~~flID~~G~I~~~~~~~~~  149 (220)
T 1xcc_A           75 -SKESHDKWIEDIKYYGKLNKWEIPIVC--DESR-ELANKLKIMDEQEKDITGL-PLTCRCLFFISPEKKIKATVLYPAT  149 (220)
T ss_dssp             -CHHHHHHHHHHHHHHHTCSCCCCCEEE--CTTS-HHHHHHTCEEEEEECTTSC-EEECEEEEEECTTSBEEEEEEECTT
T ss_pred             -CHHHHHHHHHHHHHHhcCCCCcceeEE--Cchh-HHHHHhCCCCcccccCCCC-CcccceEEEECCCCEEEEEEecCCC
Confidence             5667777763      15789999984  4433 3455665543211000010 23479999999999999987643  


Q ss_pred             --CChhhHHHHHHhhh
Q 027311          211 --TSPLSIEVVLECLC  224 (225)
Q Consensus       211 --~~~~~l~~~l~~ll  224 (225)
                        .+.+++.+.|++|.
T Consensus       150 ~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          150 TGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             BCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence              25677888887763

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.93  E-value=2.6e-25  Score=174.52  Aligned_cols=144  Identities=13%  Similarity=0.081  Sum_probs=112.3

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccC-CCCCh-----HhHHHHHHHHHHHhcCCeEEEEEecCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ-CGLTN-----SNYTELSQLYDKYKNQGLEILAFPCNQFG  134 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~tw-C~~C~-----~~~~~l~~l~~~~~~~~~~iv~Is~d~~~  134 (225)
                      ..+.+|+++|+|++.+.+|+.++|++++||++||+||++| ||+|.     .+++.++++   +  +|++|++||.|   
T Consensus        20 ~~l~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~D---   91 (224)
T 3keb_A           20 DFPRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVD---   91 (224)
T ss_dssp             CCCCTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESS---
T ss_pred             CcCCCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECC---
Confidence            3458999999999999999999999999999999999887 99999     999998887   4  67999999988   


Q ss_pred             CCCCCCHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC----
Q 027311          135 AQEPGDNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP----  209 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g----  209 (225)
                           +.+.+++|+ +++++ +||+++  |.......+.|+...... ...  + ...|++||||++|+|++++..    
T Consensus        92 -----s~~~~~~f~-~~~gl~~fplLs--D~~~~~vak~yGv~~~~~-~~~--G-~~~p~tfvID~dG~I~~~~~~~~~~  159 (224)
T 3keb_A           92 -----SPSSLARAR-HEHGLPNIALLS--TLRGRDFHKRYGVLITEY-PLS--G-YTSPAIILADAANVVHYSERLANTR  159 (224)
T ss_dssp             -----CHHHHHHHH-HHHCCTTCEEEE--STTCTTHHHHTTCBCCST-TST--T-CBCCEEEEECTTCBEEEEEECSBTT
T ss_pred             -----CHHHHHHHH-HHcCCCCceEEE--cCCchHHHHHhCCccccc-ccc--C-CccCEEEEEcCCCEEEEEEecCCCC
Confidence                 788999998 77888 699994  543344555665432210 001  2 237999999999999998653    


Q ss_pred             -CCChhhHHHHHHhhh
Q 027311          210 -TTSPLSIEVVLECLC  224 (225)
Q Consensus       210 -~~~~~~l~~~l~~ll  224 (225)
                       ..+.+++.+.|+.+.
T Consensus       160 ~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          160 DFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhh
Confidence             344667777777653

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.2e-25  Score=173.79  Aligned_cols=146  Identities=16%  Similarity=0.235  Sum_probs=115.1

Q ss_pred             cccccCCCceecCeEEe---CCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCC
Q 027311           59 HTMASQSKTSVHDFSVK---DAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFG  134 (225)
Q Consensus        59 ~~~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~  134 (225)
                      ..+.+++|+++|+|+++   |.+|++++|++|+||++||+|| +.|||.|..|++.+++.+++|++.|++|++||+|   
T Consensus        19 ~~M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~D---   95 (216)
T 3sbc_A           19 SHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTD---   95 (216)
T ss_dssp             ---CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESS---
T ss_pred             CcchhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecC---
Confidence            33556899999999976   6677899999999999999999 9999999999999999999999999999999998   


Q ss_pred             CCCCCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311          135 AQEPGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY  207 (225)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~  207 (225)
                           +....++|. +..       +++||++.  |.++ ...+.|+.+....      ++ ..+.+||||++|+|++..
T Consensus        96 -----s~~sh~aw~-~~~~~~~~~~~l~fplls--D~~~-~vak~YGv~~~~~------g~-~~R~tFiID~~G~Ir~~~  159 (216)
T 3sbc_A           96 -----SEYSLLAWT-NIPRKEGGLGPINIPLLA--DTNH-SLSRDYGVLIEEE------GV-ALRGLFIIDPKGVIRHIT  159 (216)
T ss_dssp             -----CHHHHHHHH-TSCGGGTCCCSCSSCEEE--CTTS-HHHHHHTCEETTT------TE-ECEEEEEECTTSBEEEEE
T ss_pred             -----chhhHHHHH-HHHHHhCCccCcccceEe--CCCC-HHHHHcCCeeccC------Cc-eeeEEEEECCCCeEEEEE
Confidence                 888888887 332       47899984  5443 4566787664432      22 357899999999999875


Q ss_pred             CCCC----ChhhHHHHHHhh
Q 027311          208 APTT----SPLSIEVVLECL  223 (225)
Q Consensus       208 ~g~~----~~~~l~~~l~~l  223 (225)
                      ....    +.+++.+.|++|
T Consensus       160 v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          160 INDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             EECTTBCCCHHHHHHHHHHH
T ss_pred             EcCCCCCCCHHHHHHHHHHh
Confidence            4322    446666666665

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.92  E-value=1.5e-25  Score=179.00  Aligned_cols=134  Identities=19%  Similarity=0.249  Sum_probs=107.8

Q ss_pred             cCCCceecCeEEeCC-CCC--eecCCc-cCCCEEEEEEc-ccCCCCCh-HhHHHHHHHHHHHhcCCe-EEEEEecCCCCC
Q 027311           63 SQSKTSVHDFSVKDA-KGQ--DVDLSI-YKGKLLLIVNV-ASQCGLTN-SNYTELSQLYDKYKNQGL-EILAFPCNQFGA  135 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~-~G~--~~~l~~-~~gk~vlv~F~-~twC~~C~-~~~~~l~~l~~~~~~~~~-~iv~Is~d~~~~  135 (225)
                      +.+|+++|+|++.+. +|+  .++|++ ++||++||+|| ++|||+|+ .++|.|++++++|+++|+ +|++||.|    
T Consensus         3 ~~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d----   78 (241)
T 1nm3_A            3 SMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN----   78 (241)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS----
T ss_pred             ccCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcC----
Confidence            478999999999997 777  999999 89999999999 99999999 999999999999999999 99999988    


Q ss_pred             CCCCCHHHHHHHHHhhcCCC-cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          136 QEPGDNEQIQEFACTRFKAE-FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                          +.+.+++|+ ++++.. ||++.  |.++. ..+.|+......  ..|.+....|++||| ++|+|++.+.|..
T Consensus        79 ----~~~~~~~~~-~~~~~~~~~~l~--D~~~~-~~~~~gv~~~~~--~~g~~~~~~p~t~li-~~G~i~~~~~~~~  144 (241)
T 1nm3_A           79 ----DTFVMNAWK-EDEKSENISFIP--DGNGE-FTEGMGMLVGKE--DLGFGKRSWRYSMLV-KNGVVEKMFIEPN  144 (241)
T ss_dssp             ----CHHHHHHHH-HHTTCTTSEEEE--CTTSH-HHHHTTCEEECT--TTTCCEEECCEEEEE-ETTEEEEEEECCS
T ss_pred             ----CHHHHHHHH-HhcCCCceEEEE--CCCcH-HHHHhCceeecc--cccCcccceeEEEEE-ECCEEEEEEEecc
Confidence                678889998 777886 99984  54433 444554322110  011122357999999 9999999988754

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.92  E-value=2.1e-25  Score=178.37  Aligned_cols=144  Identities=15%  Similarity=0.245  Sum_probs=114.0

Q ss_pred             cCCCceecCeEEeCCCCCeecC-Ccc--CCCEE-EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDL-SIY--KGKLL-LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l-~~~--~gk~v-lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      +.+|+++|+|++.+.+| .+++ +++  +||++ |++||++||++|..+++.|++++++|+++|++|++||+|       
T Consensus         5 ~~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~D-------   76 (249)
T 3a2v_A            5 PLIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVD-------   76 (249)
T ss_dssp             CCTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS-------
T ss_pred             CCCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECC-------
Confidence            47899999999999999 7999 999  99975 557899999999999999999999999999999999998       


Q ss_pred             CCHHHHHHHHHh-----hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--
Q 027311          139 GDNEQIQEFACT-----RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--  211 (225)
Q Consensus       139 ~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--  211 (225)
                       +.....+|...     ..+++||++.  |.+ ....+.|+......      ++.++|++||||++|+|+++..+..  
T Consensus        77 -s~~~~~~w~~~~~~~~~~~i~fPil~--D~~-~~ia~~ygv~~~~~------g~~~~p~~fIID~dG~I~~~~~~~~~~  146 (249)
T 3a2v_A           77 -SVFSHIKWKEWIERHIGVRIPFPIIA--DPQ-GTVARRLGLLHAES------ATHTVRGVFIVDARGVIRTMLYYPMEL  146 (249)
T ss_dssp             -CHHHHHHHHHHHHHHTCCCCCSCEEE--CTT-SHHHHHHTCCCTTC------SSSCCEEEEEECTTSBEEEEEEECTTB
T ss_pred             -CHHHHHHHHHHHHHhcCCCCceeEEE--CCc-hHHHHHhCCccccC------CCcccceEEEECCCCeEEEEEecCCcc
Confidence             66666666522     2578999884  433 33455664432211      3347899999999999999977654  


Q ss_pred             --ChhhHHHHHHhhh
Q 027311          212 --SPLSIEVVLECLC  224 (225)
Q Consensus       212 --~~~~l~~~l~~ll  224 (225)
                        +.+++.+.|+++.
T Consensus       147 gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          147 GRLVDEILRIVKALK  161 (249)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHH
Confidence              4678888888764

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.92  E-value=1.6e-25  Score=169.95  Aligned_cols=145  Identities=16%  Similarity=0.207  Sum_probs=108.8

Q ss_pred             cCCCceecCeEEeCC----CC-----CeecCCcc-CCC-EEEEEEcccCCCCChHh-HHHHHHHHHHHhcCCeE-EEEEe
Q 027311           63 SQSKTSVHDFSVKDA----KG-----QDVDLSIY-KGK-LLLIVNVASQCGLTNSN-YTELSQLYDKYKNQGLE-ILAFP  129 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~----~G-----~~~~l~~~-~gk-~vlv~F~~twC~~C~~~-~~~l~~l~~~~~~~~~~-iv~Is  129 (225)
                      ..+|+++|+|++.+.    +|     +.++|+++ +|| ++|++||++|||+|+.| +|.|++++++|+++|++ |++||
T Consensus         7 ~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is   86 (171)
T 2pwj_A            7 TDILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVA   86 (171)
T ss_dssp             ---CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEE
T ss_pred             ccccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            457789999999998    57     89999996 997 67778999999999999 99999999999999999 99999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHhhcCC--CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc
Q 027311          130 CNQFGAQEPGDNEQIQEFACTRFKA--EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY  207 (225)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~  207 (225)
                      .|        +.+.+++|+ +++++  +||++  .|.++. ..+.|+......  ..+.++...|++++|| +|+|++.+
T Consensus        87 ~d--------~~~~~~~~~-~~~~~~~~fp~l--~D~~~~-~~~~ygv~~~~~--~~~~g~~~~~~t~~I~-~G~I~~~~  151 (171)
T 2pwj_A           87 IN--------DPYTVNAWA-EKIQAKDAIEFY--GDFDGS-FHKSLELTTDLS--AGLLGIRSERWSAYVV-DGKVKALN  151 (171)
T ss_dssp             SS--------CHHHHHHHH-HHTTCTTTSEEE--ECTTCH-HHHHHTCEEECT--TTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             CC--------CHHHHHHHH-HHhCCCCceEEE--ECCccH-HHHHhCCccccc--cccCCcccceeEEEEE-CCEEEEEE
Confidence            88        678889998 77785  79988  454433 445565432111  0111344568899999 99999998


Q ss_pred             CCCCC----hhhHHHHHHh
Q 027311          208 APTTS----PLSIEVVLEC  222 (225)
Q Consensus       208 ~g~~~----~~~l~~~l~~  222 (225)
                      .+...    ..+.++.|+.
T Consensus       152 ~~~~~~~~~~~~~~~il~~  170 (171)
T 2pwj_A          152 VEESPSDVKVSGAETILGQ  170 (171)
T ss_dssp             ECSSTTCCSSSSHHHHHHH
T ss_pred             eecCCCCCcccCHHHHHhc
Confidence            77543    2355555554

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.92  E-value=1.8e-24  Score=168.94  Aligned_cols=144  Identities=17%  Similarity=0.236  Sum_probs=114.4

Q ss_pred             ccCCCceecCeE----EeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC
Q 027311           62 ASQSKTSVHDFS----VKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ  136 (225)
Q Consensus        62 ~~~~g~~~p~f~----l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~  136 (225)
                      .+++|+++|+|+    +.|.+|++++|++|+||++||+|| +.|||.|..|+..+++.+++|++.|++|++||+|     
T Consensus        25 ~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~D-----   99 (219)
T 3tue_A           25 NAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSID-----   99 (219)
T ss_dssp             CCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESS-----
T ss_pred             ccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCC-----
Confidence            358999999998    447788999999999999999999 8899999999999999999999999999999999     


Q ss_pred             CCCCHHHHHHHHHhh------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          137 EPGDNEQIQEFACTR------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                         +....++|..+.      .+++||+++  |.++ ...+.|+.+....      ++ ....+||||++|+|++.+...
T Consensus       100 ---s~~sh~~w~~~~~~~~~~~~l~fplls--D~~~-~va~~yGv~~~~~------g~-~~R~tFiIDp~g~Ir~~~~~~  166 (219)
T 3tue_A          100 ---SEYAHLQWTLQDRKKGGLGTMAIPILA--DKTK-NIARSYGVLEESQ------GV-AYRGLFIIDPHGMLRQITVND  166 (219)
T ss_dssp             ---CHHHHHHHHHSCGGGTCCCSCSSCEEE--CTTS-HHHHHTTCEETTT------TE-ECEEEEEECTTSBEEEEEEEC
T ss_pred             ---chhhHHHHhhhhHHhcCcccccccccc--Cccc-HHHHHcCCcccCC------Ce-eEEEEEEECCCCeEEEEEEec
Confidence               888889997322      257899984  5444 4666787765432      21 235789999999999876322


Q ss_pred             C----ChhhHHHHHHhh
Q 027311          211 T----SPLSIEVVLECL  223 (225)
Q Consensus       211 ~----~~~~l~~~l~~l  223 (225)
                      .    +.+++.+.|++|
T Consensus       167 ~~~gr~~~EvLr~l~aL  183 (219)
T 3tue_A          167 MPVGRSVEEVLRLLEAF  183 (219)
T ss_dssp             TTCCCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            2    345666666665

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.92  E-value=2.1e-25  Score=164.06  Aligned_cols=122  Identities=16%  Similarity=0.224  Sum_probs=98.9

Q ss_pred             CCCceecC-eEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecCCCCCCCCCCH
Q 027311           64 QSKTSVHD-FSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        64 ~~g~~~p~-f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ..|+.+|+ |++++.+|+.+++++++||++||+||++||++|+.++|.|+++++++++ .++++++|++|.       +.
T Consensus         2 ~~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~-------~~   74 (144)
T 1i5g_A            2 GLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE-------SA   74 (144)
T ss_dssp             TTTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS-------SH
T ss_pred             chhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCC-------CH
Confidence            36788999 9999999999999999999999999999999999999999999999985 579999999985       78


Q ss_pred             HHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEEC-CCCcEEEEcC
Q 027311          142 EQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD-KEGNVVERYA  208 (225)
Q Consensus       142 ~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid-~~G~I~~~~~  208 (225)
                      +.+++|+ ++++. .+|+.. .|. .....+.|             ++.++|+++||| ++|+|++++.
T Consensus        75 ~~~~~~~-~~~~~~~~~~~~-~d~-~~~~~~~~-------------~v~~~P~~~lid~~~G~i~~~~~  127 (144)
T 1i5g_A           75 EDFKDYY-AKMPWLALPFED-RKG-MEFLTTGF-------------DVKSIPTLVGVEADSGNIITTQA  127 (144)
T ss_dssp             HHHHHHH-TTCSSEECCTTC-HHH-HHHHHHHT-------------TCCSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHHH-HhCCccccccCc-hHH-HHHHHHHc-------------CCCCCCEEEEEECCCCcEEeccc
Confidence            8899998 55442 344331 010 11122222             788999999999 9999998754

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.85  E-value=1.8e-26  Score=169.23  Aligned_cols=122  Identities=12%  Similarity=0.195  Sum_probs=100.8

Q ss_pred             ceecCeEEeCCCCCeecCCc-cCCC-EEEEEEcccCCCCChHhHHHHHHHHHHHhc--CCeEEEEEecCCCCCCCCCCHH
Q 027311           67 TSVHDFSVKDAKGQDVDLSI-YKGK-LLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        67 ~~~p~f~l~~~~G~~~~l~~-~~gk-~vlv~F~~twC~~C~~~~~~l~~l~~~~~~--~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      +.+|+|++++.+|+.+++++ ++|| ++||+||++||++|+.++|.|+++++++++  .++.+++|++|+       +.+
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~-------~~~   74 (143)
T 2lus_A            2 EFIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDR-------SED   74 (143)
Confidence            45799999999999999999 9999 999999999999999999999999999953  469999999985       667


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                      .+++|+ ++++.+|+.+...........+.|             ++.++|+++|||++|+|+++..+
T Consensus        75 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A           75 DMFQYM-MESHGDWLAIPYRSGPASNVTAKY-------------GITGIPALVIVKKDGTLISMNGR  127 (143)
Confidence            888888 788888876532222222333333             78889999999999999988544

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.91  E-value=9.6e-26  Score=170.17  Aligned_cols=123  Identities=15%  Similarity=0.258  Sum_probs=99.4

Q ss_pred             cCCCceecCe-EEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDF-SVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f-~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d~~~~~~~~~  140 (225)
                      ..+|+++|+| ++.+.+| .+++++++||++||+||++||++|+.++|.|++++++|++ .+++|++|++|.       +
T Consensus        22 ~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~-------~   93 (165)
T 3s9f_A           22 SGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDE-------E   93 (165)
T ss_dssp             CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCC-------S
T ss_pred             hhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCC-------C
Confidence            3689999999 9999999 9999999999999999999999999999999999999986 579999999985       7


Q ss_pred             HHHHHHHHHhhcC-CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCC
Q 027311          141 NEQIQEFACTRFK-AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAP  209 (225)
Q Consensus       141 ~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g  209 (225)
                      .+++++|+ ++++ ..+++..  +.......+.|             ++.++|++||||++ |+|+++..+
T Consensus        94 ~~~~~~~~-~~~~~~~~~~~~--~~~~~~l~~~~-------------~v~~~Pt~~lid~~~G~iv~~~~~  148 (165)
T 3s9f_A           94 EDDFNAYY-AKMPWLSIPFAN--RNIVEALTKKY-------------SVESIPTLIGLNADTGDTVTTRAR  148 (165)
T ss_dssp             HHHHHHHH-TTCSSEECCTTC--HHHHHHHHHHT-------------TCCSSSEEEEEETTTCCEEESCHH
T ss_pred             HHHHHHHH-HhCCCcccccCc--hhHHHHHHHHc-------------CCCCCCEEEEEeCCCCEEEecccH
Confidence            78899998 4443 2233321  10001222223             88899999999998 999987543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.91  E-value=7.6e-25  Score=161.51  Aligned_cols=122  Identities=16%  Similarity=0.304  Sum_probs=98.6

Q ss_pred             CCCceecC-eEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecCCCCCCCCCCH
Q 027311           64 QSKTSVHD-FSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        64 ~~g~~~p~-f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ..|+.+|+ |++++.+| .+++++++||++||+||++||++|+.++|.|+++++++++ +++++++|++|.       +.
T Consensus         3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~-------~~   74 (146)
T 1o8x_A            3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE-------EE   74 (146)
T ss_dssp             CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCC-------SH
T ss_pred             chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCC-------CH
Confidence            46788999 99999999 9999999999999999999999999999999999999984 679999999985       78


Q ss_pred             HHHHHHHHhhcC-CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEEC-CCCcEEEEcCC
Q 027311          142 EQIQEFACTRFK-AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD-KEGNVVERYAP  209 (225)
Q Consensus       142 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid-~~G~I~~~~~g  209 (225)
                      +++++|+ ++++ ..+++.. .|. .....+.|             ++.++|+++|+| ++|+|+++..+
T Consensus        75 ~~~~~~~-~~~~~~~~~~~~-~d~-~~~~~~~~-------------~v~~~Pt~~lid~~~G~i~~~~~~  128 (146)
T 1o8x_A           75 DGFAGYF-AKMPWLAVPFAQ-SEA-VQKLSKHF-------------NVESIPTLIGVDADSGDVVTTRAR  128 (146)
T ss_dssp             HHHHHHH-TTCSSEECCGGG-HHH-HHHHHHHT-------------TCCSSSEEEEEETTTCCEEESCHH
T ss_pred             HHHHHHH-HHCCceeeccch-hhH-HHHHHHHh-------------CCCCCCEEEEEECCCCeEEEecch
Confidence            8899998 5544 2444431 011 11122222             788899999999 99999987543

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.90  E-value=1.3e-24  Score=159.65  Aligned_cols=121  Identities=12%  Similarity=0.245  Sum_probs=97.1

Q ss_pred             CCCceecCe-EEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHh-cCCeEEEEEecCCCCCCCCCCH
Q 027311           64 QSKTSVHDF-SVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        64 ~~g~~~p~f-~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ..|+.+|+| ++++.+| .+++++++||++||+||++||++|+.++|.|++++++++ +.++.+++|++|.       +.
T Consensus         3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~-------~~   74 (144)
T 1o73_A            3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDE-------NE   74 (144)
T ss_dssp             GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS-------SH
T ss_pred             chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCC-------CH
Confidence            578899997 9999999 999999999999999999999999999999999999998 4579999999985       67


Q ss_pred             HHHHHHHHhhcC-CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEEC-CCCcEEEEcC
Q 027311          142 EQIQEFACTRFK-AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVD-KEGNVVERYA  208 (225)
Q Consensus       142 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid-~~G~I~~~~~  208 (225)
                      +++++++ ++++ ..+++.. .|. .....+.|             ++.++|+++|+| ++|+|+++..
T Consensus        75 ~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~-------------~v~~~Pt~~lid~~~G~i~~~~~  127 (144)
T 1o73_A           75 SDFHDYY-GKMPWLALPFDQ-RST-VSELGKTF-------------GVESIPTLITINADTGAIIGTQA  127 (144)
T ss_dssp             HHHHHHH-TTCSSEECCTTC-HHH-HHHHHHHH-------------TCCSSSEEEEEETTTCCEEESCH
T ss_pred             HHHHHHH-HhCCceEeeccc-hhH-HHHHHHHc-------------CCCCCCEEEEEECCCCeEEecch
Confidence            8888888 4443 2333320 010 11122233             788899999999 8999998764

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.90  E-value=2e-23  Score=173.23  Aligned_cols=132  Identities=16%  Similarity=0.237  Sum_probs=104.5

Q ss_pred             ceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHH
Q 027311           67 TSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        67 ~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~  145 (225)
                      .++|+|++.|.+|++++|+|++||+|||+|| +.|||.|..|++.+++    ...++++|++||.|        +.+.++
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~~~v~gis~D--------~~~~~~   69 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFEKAQVVGISRD--------SVEALK   69 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCTTEEEEEEESC--------CHHHHH
T ss_pred             CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhCCCEEEEEeCC--------CHHHHH
Confidence            3689999999999999999999999999999 6799999999988864    23457999999988        789999


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCCh---hhHHHHHHh
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP---LSIEVVLEC  222 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~---~~l~~~l~~  222 (225)
                      +|. ++++++||+++  |.++ ...+.|+.+..         -..+|++||||++|+|++.+.+....   +++.+.|++
T Consensus        70 ~f~-~~~~l~fp~l~--D~~~-~v~~~ygv~~~---------~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~  136 (322)
T 4eo3_A           70 RFK-EKNDLKVTLLS--DPEG-ILHEFFNVLEN---------GKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDR  136 (322)
T ss_dssp             HHH-HHHTCCSEEEE--CTTC-HHHHHTTCEET---------TEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHH
T ss_pred             HHH-HhhCCceEEEE--cCch-HHHHhcCCCCC---------CcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhh
Confidence            998 88899999994  5444 35556643311         13468999999999999988776544   455555555


Q ss_pred             h
Q 027311          223 L  223 (225)
Q Consensus       223 l  223 (225)
                      +
T Consensus       137 ~  137 (322)
T 4eo3_A          137 L  137 (322)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.87  E-value=3.7e-22  Score=151.03  Aligned_cols=147  Identities=12%  Similarity=0.079  Sum_probs=112.3

Q ss_pred             ccCCCceecCeEEeCCCC----------CeecCCcc-CCCEE-EEEEcccCCCCChH-hHHHHHHHHHHHhcCCe-EEEE
Q 027311           62 ASQSKTSVHDFSVKDAKG----------QDVDLSIY-KGKLL-LIVNVASQCGLTNS-NYTELSQLYDKYKNQGL-EILA  127 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G----------~~~~l~~~-~gk~v-lv~F~~twC~~C~~-~~~~l~~l~~~~~~~~~-~iv~  127 (225)
                      ..++|+++|+.++....+          ++++|+++ +||++ |++||++|||+|.. |++.+++.+++|+++|+ +|++
T Consensus         9 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vig   88 (176)
T 4f82_A            9 MIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWC   88 (176)
T ss_dssp             CCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            358999999988877644          67899997 99965 55677999999999 99999999999999999 9999


Q ss_pred             EecCCCCCCCCCCHHHHHHHHHhhcCCC--cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEE
Q 027311          128 FPCNQFGAQEPGDNEQIQEFACTRFKAE--FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE  205 (225)
Q Consensus       128 Is~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~  205 (225)
                      ||+|        +....++|. ++++++  ||+++  |.+ ....+.|+......  ..|-++...+.+||| ++|+|++
T Consensus        89 IS~D--------~~~~~~~f~-~~~~l~~~f~lLs--D~~-~~va~ayGv~~~~~--~~G~g~~s~R~tfII-~dG~I~~  153 (176)
T 4f82_A           89 VSVN--------DAFVMGAWG-RDLHTAGKVRMMA--DGS-AAFTHALGLTQDLS--ARGMGIRSLRYAMVI-DGGVVKT  153 (176)
T ss_dssp             EESS--------CHHHHHHHH-HHTTCTTTSEEEE--CTT-CHHHHHHTCEEECG--GGTCCEEECCEEEEE-ETTEEEE
T ss_pred             EeCC--------CHHHHHHHH-HHhCCCCCceEEE--cCc-hHHHHHhCCCcccc--ccCCCcccccEEEEE-cCCEEEE
Confidence            9998        788999998 777888  99994  544 34556676543321  111134556899999 9999999


Q ss_pred             EcCCCC---ChhhHHHHHHhh
Q 027311          206 RYAPTT---SPLSIEVVLECL  223 (225)
Q Consensus       206 ~~~g~~---~~~~l~~~l~~l  223 (225)
                      .+.+..   +....++.|++|
T Consensus       154 ~~~~~~~~~~~~~a~~vL~~L  174 (176)
T 4f82_A          154 LAVEAPGKFEVSDAASVLATL  174 (176)
T ss_dssp             EEECCTTCCSSSSHHHHHHTC
T ss_pred             EEEcCCCCcchhhHHHHHHHh
Confidence            987542   223566666554

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.84  E-value=2.2e-20  Score=140.94  Aligned_cols=135  Identities=14%  Similarity=0.209  Sum_probs=105.6

Q ss_pred             cccCCCceecCeEEeCCCC-CeecCCc-cCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeE-EEEEecCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKG-QDVDLSI-YKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLE-ILAFPCNQFGAQ  136 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G-~~~~l~~-~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~-iv~Is~d~~~~~  136 (225)
                      ...++|+++|+|++.+..+ ++++|++ ++||++||+|+ +.|||.|..|++.+++.+++++++|++ |++||+|     
T Consensus        12 ~~~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D-----   86 (171)
T 2xhf_A           12 SPIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVN-----   86 (171)
T ss_dssp             CCCCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESS-----
T ss_pred             CcccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCC-----
Confidence            3458999999999994432 8999999 59999998888 789999999999999999999999996 9999998     


Q ss_pred             CCCCHHHHHHHHHhhcCC--CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          137 EPGDNEQIQEFACTRFKA--EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                         +....++|. ++.++  +|++++  |.+ ....+.|+.......  .|.+......+|||| +|+|++.+...
T Consensus        87 ---~~~~~~~w~-~~~~~~~~f~lLS--D~~-~~~a~ayGv~~~~~~--~g~g~~~~R~tfvId-dG~V~~~~v~~  152 (171)
T 2xhf_A           87 ---DPFVMAAWG-KTVDPEHKIRMLA--DMH-GEFTRALGTELDSSK--MLGNNRSRRYAMLID-DNKIRSVSTEP  152 (171)
T ss_dssp             ---CHHHHHHHH-HHHCTTCCSEEEE--CTT-SHHHHHHTCBCCCHH--HHSSCCBCCEEEEEE-TTEEEEEEETT
T ss_pred             ---CHHHHHHHH-HhcCCCCCeEEEE--eCC-chHHHHhCCceeccc--cCCCcceEEEEEEEe-CCEEEEEEEeC
Confidence               889999998 66677  899995  443 445666765532210  010223345789999 99999998754

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.83  E-value=1.6e-20  Score=143.34  Aligned_cols=131  Identities=12%  Similarity=0.165  Sum_probs=102.4

Q ss_pred             CCCceecCeEEeC--C---------CC----CeecCCc-cCCCEEEEEEc-ccCCCCCh-HhHHHHHHHHHHH-hcCCeE
Q 027311           64 QSKTSVHDFSVKD--A---------KG----QDVDLSI-YKGKLLLIVNV-ASQCGLTN-SNYTELSQLYDKY-KNQGLE  124 (225)
Q Consensus        64 ~~g~~~p~f~l~~--~---------~G----~~~~l~~-~~gk~vlv~F~-~twC~~C~-~~~~~l~~l~~~~-~~~~~~  124 (225)
                      ++|+.+|+|++.+  .         +|    +.++|++ ++||++||+|+ +.|||.|. .|++.+++.++++ +++|++
T Consensus         2 ~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~   81 (182)
T 1xiy_A            2 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD   81 (182)
T ss_dssp             CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred             CCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence            5899999999998  4         67    7999999 69999888777 88999999 9999999999999 999995


Q ss_pred             -EEEEecCCCCCCCCCCHHHHHHHHHhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCc
Q 027311          125 -ILAFPCNQFGAQEPGDNEQIQEFACTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN  202 (225)
Q Consensus       125 -iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~  202 (225)
                       |++||+|        +...+++|. +++++ +|++++  |.+ ....+.|+......  ..|-+......+|||| +|+
T Consensus        82 ~V~gvS~D--------~~~~~~~~~-~~~~~~~f~lLs--D~~-~~~a~~yGv~~~~~--~~G~g~~~~R~tfvId-dG~  146 (182)
T 1xiy_A           82 DIYCITNN--------DIYVLKSWF-KSMDIKKIKYIS--DGN-SSFTDSMNMLVDKS--NFFMGMRPWRFVAIVE-NNI  146 (182)
T ss_dssp             EEEEEESS--------CHHHHHHHH-HHTTCCSSEEEE--CTT-SHHHHHTTCEEECG--GGTCCEEECCEEEEEE-TTE
T ss_pred             EEEEEeCC--------CHHHHHHHH-HHcCCCCceEEE--eCc-hHHHHHhCCceecc--ccCCCCceEEEEEEEc-CCE
Confidence             9999998        888999998 67788 699995  444 34556676543221  0111333456889999 999


Q ss_pred             EEEEcCC
Q 027311          203 VVERYAP  209 (225)
Q Consensus       203 I~~~~~g  209 (225)
                      |++.+..
T Consensus       147 V~~~~v~  153 (182)
T 1xiy_A          147 LVKMFQE  153 (182)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9998754

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.78  E-value=3.9e-19  Score=127.53  Aligned_cols=110  Identities=17%  Similarity=0.142  Sum_probs=89.6

Q ss_pred             eecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe--cCCCCCCCCCCHHHHH
Q 027311           68 SVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP--CNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        68 ~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is--~d~~~~~~~~~~~~~~  145 (225)
                      .+++++..+.+|........+||+++|.||++||++|+.+.|.+++++++++ .++.++.|+  +|        ...++ 
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~~d--------~~~~~-   74 (126)
T 2l57_A            5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-GKFNIYYARLEEE--------KNIDL-   74 (126)
T ss_dssp             CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETTSS--------HHHHH-
T ss_pred             ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCCCC--------chHHH-
Confidence            4566666677776666666789999999999999999999999999999997 459999999  54        11111 


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                        . +                     .|             ++.++|+++++|++|+++.++.|..+.+++.+.|++++
T Consensus        75 --~-~---------------------~~-------------~v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~  116 (126)
T 2l57_A           75 --A-Y---------------------KY-------------DANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLG  116 (126)
T ss_dssp             --H-H---------------------HT-------------TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHC
T ss_pred             --H-H---------------------Hc-------------CCcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHh
Confidence              1 1                     12             77789999999999999999999999999999998875

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.77  E-value=1.1e-19  Score=132.11  Aligned_cols=116  Identities=13%  Similarity=0.083  Sum_probs=90.6

Q ss_pred             CCCceecCeE-EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFS-VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~-l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+..+|+|. +.+.++....+++.+||++||+||++||++|+.+.+.+   .++.++++  ++.++.|+++.       
T Consensus         5 ~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~-------   75 (134)
T 2fwh_A            5 AQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTA-------   75 (134)
T ss_dssp             -----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTT-------
T ss_pred             cccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCC-------
Confidence            5778899997 66677777788888899999999999999999999999   89999886  39999999863       


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE--EEcCCCCChhhHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV--ERYAPTTSPLSIE  217 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~--~~~~g~~~~~~l~  217 (225)
                      ..+...+.+ ++                     |             ++.++|+++++|++|+++  .++.|..+.++++
T Consensus        76 ~~~~~~~l~-~~---------------------~-------------~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~  120 (134)
T 2fwh_A           76 NDAQDVALL-KH---------------------L-------------NVLGLPTILFFDGQGQEHPQARVTGFMDAETFS  120 (134)
T ss_dssp             CCHHHHHHH-HH---------------------T-------------TCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHH
T ss_pred             CcchHHHHH-HH---------------------c-------------CCCCCCEEEEECCCCCEeeeeeeeeccCHHHHH
Confidence            212222222 11                     2             777899999999999998  7899999999999


Q ss_pred             HHHHhh
Q 027311          218 VVLECL  223 (225)
Q Consensus       218 ~~l~~l  223 (225)
                      +.|+++
T Consensus       121 ~~l~~~  126 (134)
T 2fwh_A          121 AHLRDR  126 (134)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            998865

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.77  E-value=3.2e-18  Score=125.07  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=89.1

Q ss_pred             EEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 027311           73 SVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF  152 (225)
Q Consensus        73 ~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~  152 (225)
                      .+.+.+|....+++++||++||.||++||++|+...|.+.++.++++++ +.++.|++|.       .. ++   + ++ 
T Consensus        35 ~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~-~~---~-~~-  100 (141)
T 3hxs_A           35 KIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK-IYIYKVNVDK-------EP-EL---A-RD-  100 (141)
T ss_dssp             HTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-HH---H-HH-
T ss_pred             HhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc-eEEEEEECCC-------CH-HH---H-HH-
Confidence            4567788999999999999999999999999999999999999999865 9999999873       22 11   1 11 


Q ss_pred             CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          153 KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       153 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                          |             ++.++|+++++|++|+++ ++.|..+.+++.+.|+++++
T Consensus       101 --------------------~-------------~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          101 --------------------F-------------GIQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             --------------------T-------------TCCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC
T ss_pred             --------------------c-------------CCCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHc
Confidence                                2             777899999999999997 78898899999999999874

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.74  E-value=2.2e-18  Score=128.24  Aligned_cols=122  Identities=11%  Similarity=0.037  Sum_probs=89.8

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+...++|   +..|+.+++++.+||+++|+|| ++||++|+.+.|.+   .++.+.+.. ++.++.|+.+..      
T Consensus        25 ~~~~~~~~~---~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~-~~~~v~vd~~~~------   94 (154)
T 2ju5_A           25 PIAAANLQW---ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-HLHMVEVDFPQK------   94 (154)
T ss_dssp             SSCCCCCCE---ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEECCSS------
T ss_pred             hcccCCCCC---CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC-cEEEEEecCccc------
Confidence            445555666   4457888888889999999999 99999999999999   777666543 489999987741      


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--ChhhHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--SPLSIE  217 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--~~~~l~  217 (225)
                       .           +++++..   +.. ....+.|             ++.++|+++|+|++|+++.+. |..  +.+++.
T Consensus        95 -~-----------~~~~~~~---~~~-~~l~~~~-------------~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~  144 (154)
T 2ju5_A           95 -N-----------HQPEEQR---QKN-QELKAQY-------------KVTGFPELVFIDAEGKQLARM-GFEPGGGAAYV  144 (154)
T ss_dssp             -C-----------CCCHHHH---HHH-HHHHHHT-------------TCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHH
T ss_pred             -c-----------CCChhhH---hhH-HHHHHHc-------------CCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHH
Confidence             1           1111111   110 1112222             788899999999999999999 988  788999


Q ss_pred             HHHHhhhC
Q 027311          218 VVLECLCC  225 (225)
Q Consensus       218 ~~l~~ll~  225 (225)
                      +.|+++++
T Consensus       145 ~~l~~~l~  152 (154)
T 2ju5_A          145 SKVKSALK  152 (154)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998874

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.74  E-value=8.4e-18  Score=121.02  Aligned_cols=108  Identities=16%  Similarity=0.203  Sum_probs=84.9

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI  144 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~  144 (225)
                      ...++|+++  +.+++.++....+||+++|.||++||++|+.+.|.+++++++++++ +.++.|++|.       . .++
T Consensus        20 ~~~~~~~~~--~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-v~~~~vd~d~-------~-~~l   88 (128)
T 3ul3_B           20 MFKKVPRLQ--QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR-IYLLKVDLDK-------N-ESL   88 (128)
T ss_dssp             ------CCC--CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-EEEEEEEGGG-------C-HHH
T ss_pred             HhccCCccc--cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEECCC-------C-HHH
Confidence            345567666  5667778888889999999999999999999999999999999854 9999999873       2 111


Q ss_pred             HHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                         . +                     .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|++
T Consensus        89 ---~-~---------------------~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           89 ---A-R---------------------KF-------------SVKSLPTIILL-KNKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             ---H-H---------------------HT-------------TCCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHTT
T ss_pred             ---H-H---------------------Hc-------------CCCCcCEEEEE-ECCEEEEEecCCCCHHHHHHHHHh
Confidence               1 1                     12             77889999999 799999999999999999988865

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.70  E-value=1.5e-18  Score=131.19  Aligned_cols=122  Identities=10%  Similarity=0.019  Sum_probs=76.3

Q ss_pred             eecCCccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311           81 DVDLSIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP  157 (225)
Q Consensus        81 ~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (225)
                      .+.++..+||++||+||++||++|+.+.+.+   .++++.+++ ++.++.|++|+       .. ++.+...........
T Consensus        39 ~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~-------~~-~~~~~~~~~~~~~~~  109 (172)
T 3f9u_A           39 GMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDN-------KT-PLTEPVKIMENGTER  109 (172)
T ss_dssp             HHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTC-------CC-EEEEEEEEEETTEEE
T ss_pred             HHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCc-------cc-ccchhhhhhhcchhh
Confidence            3445556799999999999999999864443   566666654 49999999874       11 000000000000000


Q ss_pred             eeeee-cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC-hhhHHHHHHhhh
Q 027311          158 IFDKV-DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS-PLSIEVVLECLC  224 (225)
Q Consensus       158 ~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~-~~~l~~~l~~ll  224 (225)
                      .+... +..+......|             ++.++|+++|+|++|+++.++.|..+ .+++.+.|++++
T Consensus       110 ~~~~~~~~~~~~~~~~~-------------~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          110 TLRTVGDKWSYLQRVKF-------------GANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEEHHHHHHHHHHHHH-------------SCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHc-------------CCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence            00000 00000001223             88999999999999999999999988 888888888765

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.69  E-value=9.9e-17  Score=118.19  Aligned_cols=113  Identities=13%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      ..|.++++..+.+.+++.+.....+||+++|.||++||++|+.+.|.++++.++++++ +.++.|+.|.       . .+
T Consensus        30 ~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-~~~~~vd~~~-------~-~~  100 (148)
T 3p2a_A           30 RCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK-VRFVKVNTEA-------E-PA  100 (148)
T ss_dssp             TTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------C-HH
T ss_pred             hcCCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc-eEEEEEECcC-------C-HH
Confidence            4577788888888888877655567899999999999999999999999999999765 9999998873       2 21


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      +.    +                     .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++
T Consensus       101 l~----~---------------------~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~  141 (148)
T 3p2a_A          101 LS----T---------------------RF-------------RIRSIPTIMLY-RNGKMIDMLNGAVPKAPFDNWLDEQ  141 (148)
T ss_dssp             HH----H---------------------HT-------------TCCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHHHH
T ss_pred             HH----H---------------------HC-------------CCCccCEEEEE-ECCeEEEEEeCCCCHHHHHHHHHHH
Confidence            11    1                     12             77788998888 6999999999999999999999987


Q ss_pred             h
Q 027311          224 C  224 (225)
Q Consensus       224 l  224 (225)
                      +
T Consensus       142 l  142 (148)
T 3p2a_A          142 L  142 (148)
T ss_dssp             H
T ss_pred             h
Confidence            6

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.66  E-value=2e-16  Score=114.29  Aligned_cols=94  Identities=16%  Similarity=0.115  Sum_probs=75.1

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHH--HHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELS--QLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~--~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      .+||++||+||++||++|+.+.|.+.  ++.++++++ +.++.|++++.     +...++   + ++             
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~-~~~~~vd~~~~-----~~~~~l---~-~~-------------   83 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH-FEVVKIDVGNF-----DRNLEL---S-QA-------------   83 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH-CEEEEEECTTT-----TSSHHH---H-HH-------------
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC-EEEEEEeCCcc-----cchHHH---H-HH-------------
Confidence            46999999999999999999999999  999999754 99999998420     011211   1 22             


Q ss_pred             CCCCchhhhhhccccCCCCCCCcc---ccceeEEEECCCCcEEEEcCC-------CCChhhHHHHHHhhh
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSI---KWNFSKFLVDKEGNVVERYAP-------TTSPLSIEVVLECLC  224 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v---~~~P~~~lid~~G~I~~~~~g-------~~~~~~l~~~l~~ll  224 (225)
                              |             ++   .++|+++++|++|+++.+..|       ..+.+++.+.|+++.
T Consensus        84 --------~-------------~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           84 --------Y-------------GDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             --------T-------------TCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             --------h-------------CCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence                    2             55   678999999999999999988       567888999998875

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.65  E-value=3.2e-16  Score=109.05  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=70.2

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      ++.++|++||+|||+||++|+...|.+.++.+++++  +.++.|++|.       . .++.    ++             
T Consensus        16 ~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~-------~-~~l~----~~-------------   68 (105)
T 3zzx_A           16 NEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD--VVFLKVDVDE-------C-EDIA----QD-------------   68 (105)
T ss_dssp             HHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEETTT-------C-HHHH----HH-------------
T ss_pred             HhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC--eEEEEEeccc-------C-HHHH----HH-------------
Confidence            344689999999999999999999999999998864  8888898773       2 2221    11             


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                              |             +|.++||++++ ++|+++.++.|. +++++.+.|++
T Consensus        69 --------~-------------~V~~~PT~~~~-~~G~~v~~~~G~-~~~~l~~~i~k  103 (105)
T 3zzx_A           69 --------N-------------QIACMPTFLFM-KNGQKLDSLSGA-NYDKLLELVEK  103 (105)
T ss_dssp             --------T-------------TCCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHH
T ss_pred             --------c-------------CCCeecEEEEE-ECCEEEEEEeCc-CHHHHHHHHHh
Confidence                    2             78889997777 899999999994 67888888875

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.65  E-value=1.2e-15  Score=105.74  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=75.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .||+++|.||++||++|+...|.++++.++++++ +.++.|+.|.       +. ++.    +                 
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~-~~~----~-----------------   67 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDE-------SP-NVA----S-----------------   67 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-HHH----H-----------------
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc-eEEEEEECCC-------CH-HHH----H-----------------
Confidence            4889999999999999999999999999999765 9999999873       22 111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        68 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           68 ----EY-------------GIRSIPTIMVF-KGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             ----HH-------------TCCSSCEEEEE-SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             ----HC-------------CCCcCCEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence                12             77778997777 899999999999999999999999875

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.64  E-value=3.7e-16  Score=109.67  Aligned_cols=89  Identities=17%  Similarity=0.209  Sum_probs=75.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.+++++ ++.++.|++|.       +.                          
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~--------------------------   61 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE-------NQ--------------------------   61 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT-------CC--------------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC-------CH--------------------------
Confidence            789999999999999999999999999999986 49999999873       10                          


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ...+.|             ++.++|+++++ ++|+++.++.|..+.+++.+.|++.+
T Consensus        62 ~l~~~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~~  104 (112)
T 2voc_A           62 ETAGKY-------------GVMSIPTLLVL-KDGEVVETSVGFKPKEALQELVNKHL  104 (112)
T ss_dssp             SHHHHT-------------TCCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTS
T ss_pred             HHHHHc-------------CCCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            011122             77889999999 99999999999999999999998765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.64  E-value=4.1e-16  Score=110.26  Aligned_cols=90  Identities=18%  Similarity=0.236  Sum_probs=74.3

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      ++.+||+++|+||++||++|+...|.++++.+++++  +.++.|++|.       . .++.    +              
T Consensus        27 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~-------~-~~l~----~--------------   78 (116)
T 3qfa_C           27 DAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDD-------C-QDVA----S--------------   78 (116)
T ss_dssp             HHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTT-------T-HHHH----H--------------
T ss_pred             HhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC-------C-HHHH----H--------------
Confidence            334789999999999999999999999999999865  9999999873       1 2111    1              


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                             .|             ++.++|+++++ ++|+++.++.|. +.+++++.|+++|
T Consensus        79 -------~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           79 -------EC-------------EVKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             -------HT-------------TCCSSSEEEEE-SSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             -------Hc-------------CCccccEEEEE-eCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence                   12             77788998888 899999999998 8999999998875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.64  E-value=2.3e-16  Score=109.05  Aligned_cols=90  Identities=13%  Similarity=0.142  Sum_probs=75.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .||+++|.||++||++|+...|.++++.++++++ +.++.|++|.       +. ++   . +                 
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~-------~~-~~---~-~-----------------   65 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDE-------NP-ET---T-S-----------------   65 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT-CEEEEEETTT-------CH-HH---H-H-----------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECcC-------CH-HH---H-H-----------------
Confidence            5789999999999999999999999999999765 9999999873       21 11   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus        66 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  105 (105)
T 1nsw_A           66 ----QF-------------GIMSIPTLILF-KGGRPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTTC
T ss_pred             ----Hc-------------CCccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhC
Confidence                12             77788999999 899999999999989999999988774

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.64  E-value=2.7e-16  Score=109.17  Aligned_cols=101  Identities=16%  Similarity=0.215  Sum_probs=80.1

Q ss_pred             CCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 027311           77 AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF  156 (225)
Q Consensus        77 ~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (225)
                      ++++.+...-.+|++++|.||++||++|+...|.++++.++++++ +.++.|+.|.       .. ++.    ++     
T Consensus         9 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~-~~~----~~-----   70 (109)
T 3tco_A            9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-AVFGRLNVDE-------NQ-KIA----DK-----   70 (109)
T ss_dssp             CCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTT-------CH-HHH----HH-----
T ss_pred             ecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC-ceEEEEcccc-------CH-HHH----Hh-----
Confidence            334444322235899999999999999999999999999999865 9999998773       22 211    11     


Q ss_pred             ceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          157 PIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       157 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                      |             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        71 ----------------~-------------~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~  109 (109)
T 3tco_A           71 ----------------Y-------------SVLNIPTTLIF-VNGQLVDSLVGAVDEDTLESTVNKYLK  109 (109)
T ss_dssp             ----------------T-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             ----------------c-------------CcccCCEEEEE-cCCcEEEeeeccCCHHHHHHHHHHHhC
Confidence                            2             77788999999 999999999999999999999999874

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.64  E-value=9.3e-16  Score=106.50  Aligned_cols=102  Identities=20%  Similarity=0.255  Sum_probs=80.2

Q ss_pred             CCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 027311           76 DAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKA  154 (225)
Q Consensus        76 ~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~  154 (225)
                      .++++.+... .-+||+++|.||++||++|+...|.++++.++++++ +.++.|++|.       +.+            
T Consensus         6 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~~------------   65 (108)
T 2trx_A            6 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NPG------------   65 (108)
T ss_dssp             ECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CTT------------
T ss_pred             ecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC-cEEEEEECCC-------CHH------------
Confidence            3444444321 125889999999999999999999999999999765 9999998773       110            


Q ss_pred             CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          155 EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       155 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                    ..+.|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        66 --------------~~~~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           66 --------------TAPKY-------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             --------------HHHHT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             --------------HHHHc-------------CCcccCEEEEE-eCCEEEEEEecCCCHHHHHHHHHHhhC
Confidence                          11112             77889999999 899999999999999999999998874

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.64  E-value=9.5e-16  Score=107.21  Aligned_cols=92  Identities=17%  Similarity=0.247  Sum_probs=73.3

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      .+.+||+++|.||++||++|+...|.++++.+++++  +.++.|++|+       ...++.                   
T Consensus        20 ~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------~~~~~~-------------------   71 (111)
T 2pu9_C           20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD--VIFLKLDCNQ-------ENKTLA-------------------   71 (111)
T ss_dssp             TTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSS-------TTHHHH-------------------
T ss_pred             HhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC--eEEEEEecCc-------chHHHH-------------------
Confidence            334689999999999999999999999999999863  8999998762       111111                   


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                            +.|             ++.++|+ ++++++|+++.++.|.. .+++.+.|+++++
T Consensus        72 ------~~~-------------~v~~~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~~  111 (111)
T 2pu9_C           72 ------KEL-------------GIRVVPT-FKILKENSVVGEVTGAK-YDKLLEAIQAARS  111 (111)
T ss_dssp             ------HHH-------------CCSBSSE-EEEESSSSEEEEEESSC-HHHHHHHHHHHHC
T ss_pred             ------HHc-------------CCCeeeE-EEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence                  112             7778899 67779999999998874 8889999998874

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.63  E-value=8.8e-16  Score=106.12  Aligned_cols=89  Identities=16%  Similarity=0.229  Sum_probs=75.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++++++|.||++||++|+...|.++++.++++++ +.++.|++|.       +. ++.    +                 
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~-~~~----~-----------------   67 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE-------NP-STA----A-----------------   67 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-HHH----H-----------------
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc-------CH-HHH----H-----------------
Confidence            7899999999999999999999999999999876 9999999873       22 111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|++++++ +|+++.++.|..+.+++.+.|+++|
T Consensus        68 ----~~-------------~v~~~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           68 ----KY-------------EVMSIPTLIVFK-DGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             ----HT-------------TCCSBSEEEEEE-TTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             ----hC-------------CCcccCEEEEEe-CCeEEEEEeCCCCHHHHHHHHHHhC
Confidence                12             777789988884 9999999999999999999998865

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=5.1e-16  Score=111.57  Aligned_cols=99  Identities=14%  Similarity=0.213  Sum_probs=76.7

Q ss_pred             eecCCccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311           81 DVDLSIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP  157 (225)
Q Consensus        81 ~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (225)
                      .+.+++.+||++||.||++||++|+.+.+.+   .++.+.++.. +.++.|+.|.      +...+   .+ +       
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~-~~~~~vd~~~------~~~~~---~~-~-------   80 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH-FVNLKMDMEK------GEGVE---LR-K-------   80 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH-SEEEEECSSS------TTHHH---HH-H-------
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC-eEEEEEecCC------cchHH---HH-H-------
Confidence            4555556799999999999999999999999   6676666543 7788887652      01111   11 1       


Q ss_pred             eeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          158 IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       158 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                    .|             ++.++|+++++|++|+++.++.|..+.+++.+.|++++
T Consensus        81 --------------~~-------------~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~  120 (130)
T 2kuc_A           81 --------------KY-------------GVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGV  120 (130)
T ss_dssp             --------------HT-------------TCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHH
T ss_pred             --------------Hc-------------CCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence                          12             77788999999999999999999999999999999876

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.63  E-value=1.2e-15  Score=110.89  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=74.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .||++||.||++||++|+...|.+.++.++++++ +.++.|++|.       . .++   + +                 
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~-------~-~~l---~-~-----------------   86 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ-IVIYKVDTEK-------E-QEL---A-G-----------------   86 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------C-HHH---H-H-----------------
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-EEEEEEeCCC-------C-HHH---H-H-----------------
Confidence            4789999999999999999999999999999865 9999999873       2 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++|++|+++ ++.|..+.+++++.|++++
T Consensus        87 ----~~-------------~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~  125 (136)
T 2l5l_A           87 ----AF-------------GIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFL  125 (136)
T ss_dssp             ----HT-------------TCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHH
T ss_pred             ----Hc-------------CCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHh
Confidence                12             777889999999999998 6788888999999999876

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.63  E-value=4.3e-16  Score=108.88  Aligned_cols=88  Identities=13%  Similarity=0.240  Sum_probs=72.3

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+||+++|.||++||++|+.+.|.++++.+++++  +.++.|++|.       . .++.    ++               
T Consensus        22 ~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vd~~~-------~-~~l~----~~---------------   72 (109)
T 3f3q_A           22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ--ADFYKLDVDE-------L-GDVA----QK---------------   72 (109)
T ss_dssp             TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------C-HHHH----HH---------------
T ss_pred             hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC--CEEEEEECCC-------C-HHHH----HH---------------
Confidence            3589999999999999999999999999999864  8999998773       2 1111    11               


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                            |             ++.++|++++++ +|+++.++.|. +++++++.|++++
T Consensus        73 ------~-------------~v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           73 ------N-------------EVSAMPTLLLFK-NGKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             ------T-------------TCCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             ------c-------------CCCccCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHhhC
Confidence                  2             777889999997 99999999988 6789999998874

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.62  E-value=1.3e-16  Score=120.18  Aligned_cols=82  Identities=13%  Similarity=0.052  Sum_probs=63.0

Q ss_pred             cCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311           83 DLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus        83 ~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .+++++||+++|+|||+|||+|+.++|.|++++++++  ++.++.|++|.           ..+.+ +++.         
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~-----------~~~~~-~~~~---------  104 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGR-----------AEDDL-RQRL---------  104 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHH-----------HHHHT-TTTT---------
T ss_pred             HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCC-----------CHHHH-HHHH---------
Confidence            3566789999999999999999999999999999875  48999887652           11111 1110         


Q ss_pred             cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                          .                  .++.++|+++++|++|+++.++.+
T Consensus       105 ----~------------------~~v~~iPt~i~~~~~G~~~~~~g~  129 (167)
T 1z6n_A          105 ----A------------------LERIAIPLVLVLDEEFNLLGRFVE  129 (167)
T ss_dssp             ----T------------------CSSCCSSEEEEECTTCCEEEEEES
T ss_pred             ----H------------------cCCCCcCeEEEECCCCCEEEEEcC
Confidence                0                  057789999999999999988744

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.62  E-value=9.8e-16  Score=106.18  Aligned_cols=89  Identities=16%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|+||++||++|+...|.++++.++++  ++.++.|++|.       .. ++                       
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~-------~~-~l-----------------------   63 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQD-------MQ-EI-----------------------   63 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECC-------C---------------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCC-------CH-HH-----------------------
Confidence            58999999999999999999999999999984  49999999873       11 11                       


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                        ...|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        64 --~~~~-------------~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~~e  105 (105)
T 4euy_A           64 --AGRY-------------AVFTGPTVLLF-YNGKEILRESRFISLENLERTIQLFEE  105 (105)
T ss_dssp             ---------------------CCCCEEEEE-ETTEEEEEEESSCCHHHHHHHHHTTC-
T ss_pred             --HHhc-------------CCCCCCEEEEE-eCCeEEEEEeCCcCHHHHHHHHHHhhC
Confidence              1112             77889999999 599999999999999999999998864

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.62  E-value=1.7e-15  Score=105.96  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.++++++ +.++.|++|.       +. ++   + +                 
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~-~~---~-~-----------------   71 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK-IEIVKLNIDE-------NP-GT---A-A-----------------   71 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-HH---H-H-----------------
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC-eEEEEEEcCC-------CH-HH---H-H-----------------
Confidence            4889999999999999999999999999999765 9999999873       21 11   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        72 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           72 ----KY-------------GVMSIPTLNVY-QGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             ----hC-------------CCCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence                12             77788997766 899999999999999999999998874

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.62  E-value=1.9e-15  Score=107.14  Aligned_cols=90  Identities=16%  Similarity=0.216  Sum_probs=75.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||++||.||++||++|+...+.++++.++++++ +.++.|++|.       + .++   + +                 
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~-v~~~~vd~d~-------~-~~l---~-~-----------------   79 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK-VVMAKVDIDD-------H-TDL---A-I-----------------   79 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEETTT-------T-HHH---H-H-----------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCCC-------C-HHH---H-H-----------------
Confidence            5889999999999999999999999999999764 9999999873       1 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        80 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           80 ----EY-------------EVSAVPTVLAM-KNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ----Hc-------------CCCcccEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence                12             77788999999 899999999998889999999998874

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.61  E-value=4.2e-16  Score=115.26  Aligned_cols=89  Identities=11%  Similarity=0.074  Sum_probs=73.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||++||+||++||++|+.+.|.+.++.++++++ +.++.|++|.       .. ++.    +                 
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~-------~~-~l~----~-----------------   71 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQ-------TA-VYT----Q-----------------   71 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTT-------CC-HHH----H-----------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCc-------CH-HHH----H-----------------
Confidence            5899999999999999999999999999999766 9999998873       11 111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEE---------EEcCC-CCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV---------ERYAP-TTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~---------~~~~g-~~~~~~l~~~l~~ll  224 (225)
                          .|             +|.++|+++ ++++|+++         .+..| ..+.+++.+.|++++
T Consensus        72 ----~~-------------~v~~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           72 ----YF-------------DISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             ----HT-------------TCCSSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             ----Hc-------------CCCccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence                12             778889988 77899999         78888 778889999888774

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.61  E-value=2.5e-16  Score=114.15  Aligned_cols=102  Identities=13%  Similarity=0.116  Sum_probs=75.7

Q ss_pred             EEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 027311           73 SVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF  152 (225)
Q Consensus        73 ~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~  152 (225)
                      ++.+.++-.-.+++.+||++||.||++||++|+.+.|.++++.+++   ++.++.|++|.       . .++.    +  
T Consensus        24 ~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~-------~-~~l~----~--   86 (133)
T 3cxg_A           24 ELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDI-------H-PKLN----D--   86 (133)
T ss_dssp             ECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTT-------C-HHHH----H--
T ss_pred             EecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccc-------h-HHHH----H--
Confidence            3444444344466778999999999999999999999999988776   38888888763       1 1111    1  


Q ss_pred             CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEE-CCCCc--EEEEcCCCCChhhHHHHHHhhh
Q 027311          153 KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLV-DKEGN--VVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       153 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~li-d~~G~--I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                         .|             ++.++|+++++ |++|+  ++.++.|. +.+++.+.|++++
T Consensus        87 -------------------~~-------------~v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l  128 (133)
T 3cxg_A           87 -------------------QH-------------NIKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYC  128 (133)
T ss_dssp             -------------------HT-------------TCCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred             -------------------hc-------------CCCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence                               12             77889999998 44555  99999887 7889999998876

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=5.7e-15  Score=106.06  Aligned_cols=90  Identities=14%  Similarity=0.106  Sum_probs=74.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|++||.||++||++|+...|.+.++.+++++. +.++.|++|.       . .++.    +                 
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~-------~-~~l~----~-----------------   83 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNADK-------H-QSLG----G-----------------   83 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT-SEEEEEETTT-------C-HHHH----H-----------------
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc-eEEEEEeCCC-------C-HHHH----H-----------------
Confidence            4789999999999999999999999999999865 9999998773       2 1111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|++++++++|+++.++.|..+.+++.+.|.+.+
T Consensus        84 ----~~-------------~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           84 ----QY-------------GVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             ----HH-------------TCCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             ----Hc-------------CCCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence                12             77788999999999987788899888888988888765

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.61  E-value=6.8e-16  Score=114.88  Aligned_cols=90  Identities=13%  Similarity=0.064  Sum_probs=76.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .|+++||+||++||++|+...|.++++.++++++ +.++.|++|.       .. ++                       
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~-------~~-~l-----------------------  110 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKIDTQA-------HP-AV-----------------------  110 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTT-------ST-HH-----------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC-EEEEEEeCCc-------cH-HH-----------------------
Confidence            5889999999999999999999999999999865 9999999873       11 11                       


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                        ...|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus       111 --~~~~-------------~i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          111 --AGRH-------------RIQGIPAFILF-HKGRELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             --HHHT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             --HHHc-------------CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHHhc
Confidence              1112             78889999988 799999999999999999999998874

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.61  E-value=5.2e-15  Score=103.70  Aligned_cols=102  Identities=13%  Similarity=0.148  Sum_probs=80.9

Q ss_pred             eCCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           75 KDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        75 ~~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      .+++++.+... .-+|++++|.||++||++|+...|.++++.++++++ +.++.|++|.       +. ++   . +   
T Consensus        10 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~-------~~-~~---~-~---   73 (115)
T 1thx_A           10 ITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP-------NP-TT---V-K---   73 (115)
T ss_dssp             EECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTT-------CH-HH---H-H---
T ss_pred             EEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEcCC-------CH-HH---H-H---
Confidence            34445544422 125889999999999999999999999999999865 9999999873       21 11   1 1   


Q ss_pred             CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          154 AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       154 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                        .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        74 ------------------~~-------------~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l  112 (115)
T 1thx_A           74 ------------------KY-------------KVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHL  112 (115)
T ss_dssp             ------------------HT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ------------------Hc-------------CCCceeEEEEE-cCCEEEEEecCCCCHHHHHHHHHHHh
Confidence                              12             77788999999 99999999999988999999999887

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.61  E-value=2.6e-15  Score=108.02  Aligned_cols=90  Identities=21%  Similarity=0.277  Sum_probs=76.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.++++++ +.++.|++|.       +.                          
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~~~-------~~--------------------------   84 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP--------------------------   84 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT-EEEEEEETTT-------CC--------------------------
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEECCC-------CH--------------------------
Confidence            5899999999999999999999999999999765 9999998773       10                          


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      ...+.|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus        85 ~l~~~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B           85 GTAPKY-------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             TTSGGG-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             HHHHHc-------------CCCccCEEEEE-eCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence            011123             78889999999 999999999999999999999999874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=2.2e-15  Score=122.72  Aligned_cols=90  Identities=14%  Similarity=0.244  Sum_probs=74.7

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+||++||+||++||++|+.+.|.+.++.++++++ +.++.|++|.       +. ++   . ++               
T Consensus        24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~-------~~-~~---~-~~---------------   75 (287)
T 3qou_A           24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ-FILAKLDCDA-------EQ-MI---A-AQ---------------   75 (287)
T ss_dssp             TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS-SEEEEEETTT-------CH-HH---H-HT---------------
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEEeCcc-------CH-HH---H-HH---------------
Confidence            35899999999999999999999999999999865 9999999873       21 11   1 11               


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                            |             +|.++|+++++ ++|+++.++.|..+.+.+.+.|+..+
T Consensus        76 ------~-------------~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           76 ------F-------------GLRAIPTVYLF-QNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             ------T-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             ------c-------------CCCCCCeEEEE-ECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence                  2             78889999999 79999999999988888888887653

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=2.5e-15  Score=109.30  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=80.2

Q ss_pred             EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311           74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTR  151 (225)
Q Consensus        74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~  151 (225)
                      +.+++++.+...-.+||++||.||++||++|+...|.+.++.+++++++  +.++.|+++.       . .+   .+ + 
T Consensus        19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~~---~~-~-   85 (140)
T 2dj1_A           19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-------A-SM---LA-S-   85 (140)
T ss_dssp             EEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT-------C-HH---HH-H-
T ss_pred             CEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc-------c-HH---HH-H-
Confidence            4455666555433468999999999999999999999999999998763  7788777652       1 11   11 1 


Q ss_pred             cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                          .|             ++.++|+++++ ++|+ +.++.|..+.+++.+.|+++++
T Consensus        86 --------------------~~-------------~v~~~Pt~~~~-~~G~-~~~~~g~~~~~~l~~~l~~~~~  124 (140)
T 2dj1_A           86 --------------------KF-------------DVSGYPTIKIL-KKGQ-AVDYDGSRTQEEIVAKVREVSQ  124 (140)
T ss_dssp             --------------------HT-------------TCCSSSEEEEE-ETTE-EEECCSCCCHHHHHHHHHHHHS
T ss_pred             --------------------HC-------------CCCccCeEEEE-ECCc-EEEcCCCCCHHHHHHHHHHhcC
Confidence                                12             77788999999 7899 6788898999999999998763

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.60  E-value=5e-15  Score=103.57  Aligned_cols=89  Identities=13%  Similarity=0.206  Sum_probs=69.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.++++..++.++.|++|.       .. ++   . +                 
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~-~~---~-~-----------------   70 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE-------NS-EI---S-E-----------------   70 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT-------CH-HH---H-H-----------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc-------CH-HH---H-H-----------------
Confidence            489999999999999999999999999999765669999999873       21 11   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++ ++|+++.++.|.. ++++.+.|++++
T Consensus        71 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~~~  108 (112)
T 3d6i_A           71 ----LF-------------EISAVPYFIII-HKGTILKELSGAD-PKEYVSLLEDCK  108 (112)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEECSCC-HHHHHHHHHHHH
T ss_pred             ----Hc-------------CCCcccEEEEE-ECCEEEEEecCCC-HHHHHHHHHHHH
Confidence                12             77788998887 7999999999874 556888888775

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.60  E-value=2.9e-15  Score=107.20  Aligned_cols=89  Identities=13%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+||++||.||++||++|+...|.++++.++++  ++.++.|++|.       . .++.    +                
T Consensus        36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~-------~-~~l~----~----------------   85 (124)
T 1xfl_A           36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE-------L-KSVA----S----------------   85 (124)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------S-HHHH----H----------------
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc-------C-HHHH----H----------------
Confidence            369999999999999999999999999999986  59999998873       2 1111    1                


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                           .|             ++.++|+++++ ++|+++.++.| .+++++.+.|+++++
T Consensus        86 -----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~l~~~l~  124 (124)
T 1xfl_A           86 -----DW-------------AIQAMPTFMFL-KEGKILDKVVG-AKKDELQSTIAKHLA  124 (124)
T ss_dssp             -----HT-------------TCCSSSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHHCC
T ss_pred             -----Hc-------------CCCccCEEEEE-ECCEEEEEEeC-CCHHHHHHHHHHhcC
Confidence                 12             77788997666 89999999988 478899999998874

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.60  E-value=4.4e-15  Score=102.71  Aligned_cols=102  Identities=14%  Similarity=0.216  Sum_probs=79.5

Q ss_pred             eCCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           75 KDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        75 ~~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      ..++++.+... .-+|++++|.||++||++|+...+.++++.+++++ ++.++.|++|.       +.+ +         
T Consensus         5 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------~~~-~---------   66 (107)
T 2i4a_A            5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD-------NPE-T---------   66 (107)
T ss_dssp             EECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT-------CCH-H---------
T ss_pred             eecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC-------CHH-H---------
Confidence            34445544321 13588999999999999999999999999999986 49999999873       111 1         


Q ss_pred             CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          154 AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       154 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                      .+.|             ++.++|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        67 ----------------~~~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (107)
T 2i4a_A           67 ----------------PNAY-------------QVRSIPTLMLV-RDGKVIDKKVGALPKSQLKAWVESAQ  107 (107)
T ss_dssp             ----------------HHHT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHTC
T ss_pred             ----------------HHhc-------------CCCccCEEEEE-eCCEEEEEecCCCCHHHHHHHHHhcC
Confidence                            1112             77788999999 99999999999989999999998764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.60  E-value=4.3e-15  Score=103.77  Aligned_cols=88  Identities=13%  Similarity=0.118  Sum_probs=72.6

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      ||+++|.||++||++|+...|.++++.+++++ ++.++.|+.|.       . .++.    +                  
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~-~~~~----~------------------   72 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA-------V-AAVA----E------------------   72 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------T-HHHH----H------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc-------h-HHHH----H------------------
Confidence            89999999999999999999999999999976 59999999873       1 2111    1                  


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                         .|             ++.++|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        73 ---~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           73 ---AA-------------GITAMPTFHVY-KDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             ---HH-------------TCCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             ---Hc-------------CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence               12             67778996555 899999999998 88899999998874

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=4.7e-15  Score=106.75  Aligned_cols=90  Identities=16%  Similarity=0.116  Sum_probs=74.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc---CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN---QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~---~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      .+|++||.||++||++|+...|.+.++.+++++   .++.++.|+.|.       .. +                     
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~-~---------------------   74 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV-------NQ-V---------------------   74 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT-------CC-H---------------------
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC-------CH-H---------------------
Confidence            478999999999999999999999999999973   349999998763       11 1                     


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          ....|             ++.++|+++++++ |+++.++.|..+.+++.+.|++++
T Consensus        75 ----l~~~~-------------~v~~~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l~~~~  116 (133)
T 1x5d_A           75 ----LASRY-------------GIRGFPTIKIFQK-GESPVDYDGGRTRSDIVSRALDLF  116 (133)
T ss_dssp             ----HHHHH-------------TCCSSSEEEEEET-TEEEEEECSCCSHHHHHHHHHHHH
T ss_pred             ----HHHhC-------------CCCeeCeEEEEeC-CCceEEecCCCCHHHHHHHHHHHh
Confidence                11122             7788999999987 889999999989999999998875

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.59  E-value=2.8e-15  Score=103.36  Aligned_cols=102  Identities=15%  Similarity=0.188  Sum_probs=78.9

Q ss_pred             eCCCCCeecCCc-cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           75 KDAKGQDVDLSI-YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        75 ~~~~G~~~~l~~-~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      .+.+++.+...- -.||+++|.||++||++|+...|.++++.++++++ +.++.|+.|.       +. ++   + ++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~-~~---~-~~--   67 (105)
T 1fb6_A            3 QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDE-------AP-GI---A-TQ--   67 (105)
T ss_dssp             EECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-HH---H-HH--
T ss_pred             eechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc-eEEEEEcCcc-------hH-HH---H-Hh--
Confidence            345555554322 25789999999999999999999999999999865 9999998773       21 11   1 11  


Q ss_pred             CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          154 AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       154 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                         |             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus        68 -------------------~-------------~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           68 -------------------Y-------------NIRSIPTVLFF-KNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             -------------------T-------------TCCSSSEEEEE-ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             -------------------C-------------CCCcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHhhC
Confidence                               2             67778997666 79999999999999999999998875

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.59  E-value=3.9e-15  Score=106.12  Aligned_cols=91  Identities=18%  Similarity=0.235  Sum_probs=72.4

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +.+||+++|.||++||++|+...|.++++.++++  ++.++.|+.++       ...++.                    
T Consensus        34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~-------~~~~~~--------------------   84 (124)
T 1faa_A           34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ-------ENKTLA--------------------   84 (124)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS-------TTHHHH--------------------
T ss_pred             hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc-------chHHHH--------------------
Confidence            3478999999999999999999999999999986  48999998762       111111                    


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                           +.|             ++.++|+ ++++++|+++.++.|.. .+++.+.|+++++
T Consensus        85 -----~~~-------------~v~~~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~~  124 (124)
T 1faa_A           85 -----KEL-------------GIRVVPT-FKILKENSVVGEVTGAK-YDKLLEAIQAARS  124 (124)
T ss_dssp             -----HHH-------------CCSSSSE-EEEEETTEEEEEEESSC-HHHHHHHHHHHTC
T ss_pred             -----HHc-------------CCCeeeE-EEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence                 112             7788898 56669999999998876 8899999998864

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.59  E-value=9.9e-16  Score=108.87  Aligned_cols=111  Identities=19%  Similarity=0.220  Sum_probs=80.4

Q ss_pred             CCceecCeEEeCCCCCeecCCc--cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSI--YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~--~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      .|...+.+...+.++-.-.+.+  .+||+++|.||++||++|+...|.++++.+++++  +.++.|++|.       .. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~-------~~-   77 (122)
T 2vlu_A            8 AAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE-------LK-   77 (122)
T ss_dssp             ----CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------CH-
T ss_pred             cCCCCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC-------CH-
Confidence            4555566666554332222332  2589999999999999999999999999999875  9999998873       21 


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                      ++   . ++                     |             ++.++|+++++ ++|+++.++.|.. .+++.+.|++
T Consensus        78 ~~---~-~~---------------------~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~  117 (122)
T 2vlu_A           78 PI---A-EQ---------------------F-------------SVEAMPTFLFM-KEGDVKDRVVGAI-KEELTAKVGL  117 (122)
T ss_dssp             HH---H-HH---------------------T-------------TCCSSSEEEEE-ETTEEEEEEESSC-HHHHHHHHHH
T ss_pred             HH---H-HH---------------------c-------------CCCcccEEEEE-eCCEEEEEEeCcC-HHHHHHHHHH
Confidence            11   1 11                     2             77788996666 8999999999988 8899999998


Q ss_pred             hhC
Q 027311          223 LCC  225 (225)
Q Consensus       223 ll~  225 (225)
                      +++
T Consensus       118 ~l~  120 (122)
T 2vlu_A          118 HAA  120 (122)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            763

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.59  E-value=2e-15  Score=103.62  Aligned_cols=89  Identities=15%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +|++++|.||++||++|+...+.++++.+++++  +.++.|+.|.       . .++   . +                 
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~-------~-~~~---~-~-----------------   63 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE-------N-PDI---A-A-----------------   63 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------C-HHH---H-H-----------------
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC-------C-HHH---H-H-----------------
Confidence            589999999999999999999999999999875  9999999873       2 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        64 ----~~-------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           64 ----RY-------------GVMSLPTVIFF-KDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             ----HT-------------TCCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             ----hC-------------CccccCEEEEE-ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence                12             67778999999 899999999999899999999998874

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.59  E-value=1.9e-15  Score=110.36  Aligned_cols=89  Identities=8%  Similarity=0.050  Sum_probs=74.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|++||.||++||++|+...|.+.++.++++++ +.++.|++|.       . .++.    +                 
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~-------~-~~l~----~-----------------   72 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS-AVFGRINIAT-------N-PWTA----E-----------------   72 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEETTT-------C-HHHH----H-----------------
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc-eEEEEEECCc-------C-HhHH----H-----------------
Confidence            4899999999999999999999999999999875 9999999873       2 2211    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        73 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l  111 (140)
T 3hz4_A           73 ----KY-------------GVQGTPTFKFF-CHGRPVWEQVGQIYPSILKNAVRDML  111 (140)
T ss_dssp             ----HH-------------TCCEESEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             ----HC-------------CCCcCCEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence                12             77788987777 89999999999999999999998876

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=4.7e-15  Score=106.05  Aligned_cols=101  Identities=12%  Similarity=0.122  Sum_probs=76.9

Q ss_pred             EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      +.+++++.+. ...++ .++|.||++||++|+...|.+.++.+++++.++.++.|++|.       .. ++   + +   
T Consensus         9 v~~l~~~~f~-~~~~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~-------~~-~~---~-~---   71 (126)
T 1x5e_A            9 VRVITDENWR-ELLEG-DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE-------QP-GL---S-G---   71 (126)
T ss_dssp             EEECCTTTHH-HHTSS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT-------CH-HH---H-H---
T ss_pred             cEEecHHHHH-HHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC-------CH-HH---H-H---
Confidence            3344444443 12344 489999999999999999999999999987679999998873       21 11   1 1   


Q ss_pred             CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          154 AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       154 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                        .|             ++.++|+++++ ++|++ .++.|..+.+++.+.|++++
T Consensus        72 ------------------~~-------------~v~~~Pt~~~~-~~G~~-~~~~G~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           72 ------------------RF-------------IINALPTIYHC-KDGEF-RRYQGPRTKKDFINFISDKE  109 (126)
T ss_dssp             ------------------HT-------------TCCSSSEEEEE-ETTEE-EECCSCCCHHHHHHHHHTCG
T ss_pred             ------------------Hc-------------CCcccCEEEEE-eCCeE-EEeecCCCHHHHHHHHHHHh
Confidence                              12             77788999999 89995 68889888999999998765

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.58  E-value=3.5e-15  Score=106.18  Aligned_cols=90  Identities=13%  Similarity=0.172  Sum_probs=74.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.++++++++.++.|++|.       . .++.    +                 
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~-------~-~~~~----~-----------------   82 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE-------Q-SQIA----Q-----------------   82 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT-------C-HHHH----H-----------------
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC-------C-HHHH----H-----------------
Confidence            588999999999999999999999999999987679999999873       2 1111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        83 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  121 (121)
T 2j23_A           83 ----EV-------------GIRAMPTFVFF-KNGQKIDTVVGA-DPSKLQAAITQHSA  121 (121)
T ss_dssp             ----HH-------------TCCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHTC
T ss_pred             ----Hc-------------CCCcccEEEEE-ECCeEEeeEcCC-CHHHHHHHHHHhhC
Confidence                12             67778998887 699999999998 88999999999874

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.58  E-value=4.5e-15  Score=105.18  Aligned_cols=103  Identities=13%  Similarity=0.040  Sum_probs=80.8

Q ss_pred             EEeCCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc----CCeEEEEEecCCCCCCCCCCHHHHHHH
Q 027311           73 SVKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN----QGLEILAFPCNQFGAQEPGDNEQIQEF  147 (225)
Q Consensus        73 ~l~~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~----~~~~iv~Is~d~~~~~~~~~~~~~~~~  147 (225)
                      .+.+++++.+... ..+||+++|.||++||++|+...|.++++.+++++    .++.++.|+.+.       .       
T Consensus         8 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~-------   73 (121)
T 2djj_A            8 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA-------N-------   73 (121)
T ss_dssp             SSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT-------S-------
T ss_pred             CeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcc-------c-------
Confidence            3556677766654 24789999999999999999999999999999986    258888888652       0       


Q ss_pred             HHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHHHHhhh
Q 027311          148 ACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~l~~ll  224 (225)
                               + +  .                      . ++.++|++++++++|++ +.++.|..+.+++.+.|++++
T Consensus        74 ---------~-~--~----------------------~-~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  116 (121)
T 2djj_A           74 ---------D-V--P----------------------D-EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  116 (121)
T ss_dssp             ---------C-C--S----------------------S-CCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             ---------c-c--c----------------------c-ccCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence                     0 0  0                      0 35568999999998885 678889888999999998876

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.58  E-value=1.6e-15  Score=110.36  Aligned_cols=93  Identities=16%  Similarity=0.273  Sum_probs=75.0

Q ss_pred             ecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311           82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK  161 (225)
Q Consensus        82 ~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
                      +..++.+||+++|+||++||++|+.+.|.++++.++++  ++.++.|++|.       . .++   . +           
T Consensus        39 ~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~-------~-~~~---~-~-----------   93 (139)
T 3d22_A           39 LSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE-------L-SDF---S-A-----------   93 (139)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------S-HHH---H-H-----------
T ss_pred             HHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc-------c-HHH---H-H-----------
Confidence            44444579999999999999999999999999999984  49999999873       2 111   1 1           


Q ss_pred             ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                .|             ++.++|+++++ ++|+++.++.|. +.+++.+.|++++
T Consensus        94 ----------~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~~  131 (139)
T 3d22_A           94 ----------SW-------------EIKATPTFFFL-RDGQQVDKLVGA-NKPELHKKITAIL  131 (139)
T ss_dssp             ----------HT-------------TCCEESEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             ----------Hc-------------CCCcccEEEEE-cCCeEEEEEeCC-CHHHHHHHHHHHh
Confidence                      12             77788998877 999999999998 7888999988875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.58  E-value=3.2e-15  Score=103.59  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=75.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...+.++++.++++++ +.++.|++|.       +. ++   . +                 
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~-~~---~-~-----------------   66 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK-LLVAKLDVDE-------NP-KT---A-M-----------------   66 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT-BEEEEEETTT-------CH-HH---H-H-----------------
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc-eEEEEEECCC-------CH-hH---H-H-----------------
Confidence            5889999999999999999999999999999864 9999999873       21 11   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        67 ----~~-------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l  105 (109)
T 2yzu_A           67 ----RY-------------RVMSIPTVILF-KDGQPVEVLVGAQPKRNYQAKIEKHL  105 (109)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             ----hC-------------CCCcCCEEEEE-eCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence                12             67778999999 89999999999988999999999876

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.58  E-value=1.1e-16  Score=120.36  Aligned_cols=111  Identities=9%  Similarity=0.069  Sum_probs=79.9

Q ss_pred             ecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        69 ~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      .+++...+.+ +.++....+||++||+||++||++|+.+.|.++++.+.++. ++.++.|++|.       +.+.     
T Consensus        27 ~~~i~w~~~~-~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~-------~~~~-----   92 (164)
T 1sen_A           27 GDHIHWRTLE-DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNFVMVNLED-------EEEP-----   92 (164)
T ss_dssp             CTTSCBCCHH-HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEG-------GGSC-----
T ss_pred             cccccccCHH-HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecC-------CchH-----
Confidence            4445555554 55666667899999999999999999999999998776553 36777787763       0000     


Q ss_pred             HhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC----------CChhhHHH
Q 027311          149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT----------TSPLSIEV  218 (225)
Q Consensus       149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~----------~~~~~l~~  218 (225)
                                          ....|..           ++.++|+++++|++|+++.+..|.          .+.+++.+
T Consensus        93 --------------------~~~~~~~-----------~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~  141 (164)
T 1sen_A           93 --------------------KDEDFSP-----------DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQ  141 (164)
T ss_dssp             --------------------SCGGGCT-----------TCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHH
T ss_pred             --------------------HHHHhcc-----------cCCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHH
Confidence                                0011200           335689999999999999888884          66788888


Q ss_pred             HHHhhh
Q 027311          219 VLECLC  224 (225)
Q Consensus       219 ~l~~ll  224 (225)
                      .|++++
T Consensus       142 ~l~~~l  147 (164)
T 1sen_A          142 GMKEAQ  147 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888775

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.57  E-value=8.2e-15  Score=102.10  Aligned_cols=89  Identities=16%  Similarity=0.242  Sum_probs=75.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++++++|.||++||++|+...|.+.++.++++++ +.++.|++|.       . .++.    ++                
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~~-------~-~~l~----~~----------------   71 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES-FGFYYVDVEE-------E-KTLF----QR----------------   71 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTT-------C-HHHH----HH----------------
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCc-------C-hhHH----Hh----------------
Confidence            5789999999999999999999999999999864 9999999873       2 2111    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           |             ++.++|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        72 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           72 -----F-------------SLKGVPQILYF-KDGEYKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             -----T-------------TCCSSCEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             -----c-------------CCCcCCEEEEE-ECCEEEEEEeccCCHHHHHHHHHHHh
Confidence                 2             77788999999 79999999999999999999999876

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=8.4e-15  Score=105.58  Aligned_cols=107  Identities=18%  Similarity=0.177  Sum_probs=78.5

Q ss_pred             eEEeCCCCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311           72 FSVKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFAC  149 (225)
Q Consensus        72 f~l~~~~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~  149 (225)
                      -.+.+++++.+...-. +||+++|.||++||++|+.+.|.++++.++++++ ++.++.|..+.       .         
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~-------~---------   70 (133)
T 2dj3_A            7 GPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA-------N---------   70 (133)
T ss_dssp             CSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT-------S---------
T ss_pred             CceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc-------C---------
Confidence            3455566666654443 4899999999999999999999999999999853 48888877552       0         


Q ss_pred             hhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEE-EcC-CCCChhhHHHHHHhhh
Q 027311          150 TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE-RYA-PTTSPLSIEVVLECLC  224 (225)
Q Consensus       150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~-~~~-g~~~~~~l~~~l~~ll  224 (225)
                             +.          ....|             ++.++|+++++++.|++.. .+. |..+.+++.+.|++++
T Consensus        71 -------~~----------~~~~~-------------~v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A           71 -------DI----------TNDQY-------------KVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHA  117 (133)
T ss_dssp             -------CC----------CCSSC-------------CCSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHS
T ss_pred             -------HH----------HHhhc-------------CCCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhc
Confidence                   00          01112             8888999999998776532 455 5578889999998876

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.57  E-value=6.7e-15  Score=101.50  Aligned_cols=89  Identities=18%  Similarity=0.224  Sum_probs=73.7

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +.+||+++|.||++||++|+...|.++++.+++++  +.++.|+.|.       . .++.    +               
T Consensus        17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~~~-------~-~~~~----~---------------   67 (105)
T 3m9j_A           17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDD-------C-QDVA----S---------------   67 (105)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--SEEEEEETTT-------C-HHHH----H---------------
T ss_pred             hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC--eEEEEEEhhh-------h-HHHH----H---------------
Confidence            34689999999999999999999999999999865  9999998773       2 1111    1               


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                            .|             ++.++|+++++ ++|+++.++.|. +.+++.+.|+++|
T Consensus        68 ------~~-------------~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           68 ------ES-------------EVKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             ------HT-------------TCCBSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             ------Hc-------------CCCcCcEEEEE-ECCeEEEEEeCC-CHHHHHHHHHHhC
Confidence                  12             77788999999 889999999998 8899999998875

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.57  E-value=1.2e-15  Score=119.08  Aligned_cols=107  Identities=15%  Similarity=0.205  Sum_probs=84.9

Q ss_pred             cCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311           70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC  149 (225)
Q Consensus        70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~  149 (225)
                      ++..+.+++++.+.....+|+++||.||++||++|+...|.++++.++++++ +.++.|++|.       . .++   + 
T Consensus        95 ~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~~~-------~-~~l---~-  161 (210)
T 3apq_A           95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGD-------D-RML---C-  161 (210)
T ss_dssp             TCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT-BEEEEEETTT-------C-HHH---H-
T ss_pred             CCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc-eEEEEEECCc-------c-HHH---H-
Confidence            3444555666655544457899999999999999999999999999999765 9999999873       2 111   1 


Q ss_pred             hhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          150 TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ++                     |             ++.++|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus       162 ~~---------------------~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l  201 (210)
T 3apq_A          162 RM---------------------K-------------GVNSYPSLFIF-RSGMAAVKYNGDRSKESLVAFAMQHV  201 (210)
T ss_dssp             HH---------------------T-------------TCCSSSEEEEE-CTTSCCEECCSCCCHHHHHHHHHHHH
T ss_pred             HH---------------------c-------------CCCcCCeEEEE-ECCCceeEecCCCCHHHHHHHHHHhC
Confidence            11                     2             77788999999 99999999999999999999998876

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.57  E-value=1.5e-14  Score=104.58  Aligned_cols=88  Identities=10%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             CCEEEEEEcccCC--CCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           89 GKLLLIVNVASQC--GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        89 gk~vlv~F~~twC--~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      ++++||+|||+||  ++|+...|.|.++.++|+++ +.++-|++|+        ..++.    .                
T Consensus        33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~-v~~~KVdvDe--------~~~la----~----------------   83 (137)
T 2qsi_A           33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR-LVAAEVAAEA--------ERGLM----A----------------   83 (137)
T ss_dssp             SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT-EEEEEECGGG--------HHHHH----H----------------
T ss_pred             CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC-cEEEEEECCC--------CHHHH----H----------------
Confidence            3499999999999  99999999999999999865 9999999873        22222    1                


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           .|             +|.++||.+++ ++|+++.+..|..+.+++.+.|++++
T Consensus        84 -----~y-------------gV~siPTlilF-kdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           84 -----RF-------------GVAVCPSLAVV-QPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             -----HH-------------TCCSSSEEEEE-ECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             -----Hc-------------CCccCCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence                 13             88999998888 99999999999999999999998765

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.56  E-value=1.7e-14  Score=106.06  Aligned_cols=89  Identities=11%  Similarity=0.019  Sum_probs=71.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++|||+|||+||++|+...|.|.++.++++++ +.|+-|++|+.       ++                         
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~-v~f~kVDVDe~-------~e-------------------------   86 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF-CVIYLVDITEV-------PD-------------------------   86 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTC-------CT-------------------------
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC-cEEEEEECCCC-------HH-------------------------
Confidence            4689999999999999999999999999999765 89999998841       00                         


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEE--E-------EcCCCCC-hhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV--E-------RYAPTTS-PLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~--~-------~~~g~~~-~~~l~~~l~~ll  224 (225)
                       ....|             +|.++||++++ ++|+.+  .       +..|..+ .+++.+.|++++
T Consensus        87 -~a~~y-------------~V~siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A           87 -FNTMY-------------ELYDPVSVMFF-YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             -TTTTT-------------TCCSSEEEEEE-ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             -HHHHc-------------CCCCCCEEEEE-ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence             11123             88899998877 778887  4       7788776 778888888765

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.33  E-value=2.9e-16  Score=112.98  Aligned_cols=101  Identities=13%  Similarity=0.165  Sum_probs=79.3

Q ss_pred             CCeecCCccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC
Q 027311           79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAE  155 (225)
Q Consensus        79 G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (225)
                      .+.+++...+||++||+||++||++|+...|.+   .++.+.++++ +.++.|++|.        .+ ..          
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~~-~~----------   68 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR-FVVASVSVDT--------PE-GQ----------   68 (130)
Confidence            566777888899999999999999999999999   8888887654 8888887652        00 00          


Q ss_pred             cceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECC-CCcE--EEEcCCCCChhhHHHHHHhhh
Q 027311          156 FPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK-EGNV--VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       156 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~I--~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                  .....|             ++.++|+++++|+ +|++  +.++.|..+.+++.+.|++++
T Consensus        69 ------------~~~~~~-------------~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~  115 (130)
T 2lst_A           69 ------------ELARRY-------------RVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVC  115 (130)
Confidence                        011112             7888999999996 5999  889999888889999988876

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.55  E-value=1.4e-14  Score=107.29  Aligned_cols=87  Identities=8%  Similarity=0.084  Sum_probs=71.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||++||.||++||++|+...|.++++.++++  ++.++.|++|.       . .++   . +                 
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~-------~-~~l---~-~-----------------   79 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG-------V-PEV---S-E-----------------   79 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------S-HHH---H-H-----------------
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC-------C-HHH---H-H-----------------
Confidence            48999999999999999999999999999984  59999999873       1 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|++++++ +|+++.++.|. +++++.+.|++++
T Consensus        80 ----~~-------------~v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l  117 (153)
T 2wz9_A           80 ----KY-------------EISSVPTFLFFK-NSQKIDRLDGA-HAPELTKKVQRHA  117 (153)
T ss_dssp             ----HT-------------TCCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHS
T ss_pred             ----Hc-------------CCCCCCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHHHh
Confidence                12             778899999998 99999998885 6778999998876

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.55  E-value=1e-14  Score=102.75  Aligned_cols=85  Identities=18%  Similarity=0.276  Sum_probs=69.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.+++++  +.++.|++|.       +. ++   + ++                
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~-------~~-~l---~-~~----------------   78 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE-------SP-DI---A-KE----------------   78 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT-------CH-HH---H-HH----------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC-------CH-HH---H-HH----------------
Confidence            589999999999999999999999999999865  9999998873       21 11   1 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                           |             ++.++|+++++ ++|+++.++.|.. ++++++.|++
T Consensus        79 -----~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           79 -----C-------------EVTAMPTFVLG-KDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             -----T-------------TCCSBSEEEEE-ETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             -----C-------------CCCcccEEEEE-eCCeEEEEEeCCC-HHHHHHHHHh
Confidence                 2             67778997765 9999999999987 8888888775

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.55  E-value=1.4e-14  Score=100.57  Aligned_cols=87  Identities=14%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.++++  ++.++.|++|.       . .++   . +                 
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~-------~-~~~---~-~-----------------   68 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ-------C-QGT---A-A-----------------   68 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------S-HHH---H-H-----------------
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEECcc-------C-HHH---H-H-----------------
Confidence            58999999999999999999999999999984  49999999873       2 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++ ++|+++.++.|.. .+++.+.|++++
T Consensus        69 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~~l  106 (107)
T 1gh2_A           69 ----TN-------------NISATPTFQFF-RNKVRIDQYQGAD-AVGLEEKIKQHL  106 (107)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred             ----hc-------------CCCcccEEEEE-ECCeEEEEEeCCC-HHHHHHHHHHhc
Confidence                12             77788998888 8999999998854 456999888875

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.54  E-value=1.2e-14  Score=104.25  Aligned_cols=87  Identities=9%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +|+++||.||++||++|+...|.++++.++++  ++.++.|++|.       . .++.    +                 
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------~-~~l~----~-----------------   84 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN-------N-SEIV----S-----------------   84 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT-------C-HHHH----H-----------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC-------C-HHHH----H-----------------
Confidence            68999999999999999999999999999984  49999999873       2 1111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++ ++|+++.++.| .+++++.+.|++++
T Consensus        85 ----~~-------------~v~~~Pt~~i~-~~G~~~~~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           85 ----KC-------------RVLQLPTFIIA-RSGKMLGHVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             ----Hc-------------CCCcccEEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence                12             77788996666 89999999998 57889999998876

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.54  E-value=2.4e-14  Score=98.76  Aligned_cols=89  Identities=24%  Similarity=0.339  Sum_probs=71.5

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+|++++|.||++||++|+...|.++++.+++++ ++.++.|+.|.       . .++   . ++               
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~-------~-~~~---~-~~---------------   69 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDE-------C-EDI---A-ME---------------   69 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT-------C-HHH---H-HH---------------
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEeccc-------h-HHH---H-HH---------------
Confidence            4689999999999999999999999999999874 49999999873       2 111   1 11               


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                            |             ++.++|+++++ ++|+++.++.| .+++++.+.|+++|
T Consensus        70 ------~-------------~v~~~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           70 ------Y-------------NISSMPTFVFL-KNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             ------T-------------TCCSSSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             ------c-------------CCCcccEEEEE-cCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence                  2             67778996655 89999999999 67888999998765

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.54  E-value=1.4e-14  Score=99.68  Aligned_cols=89  Identities=18%  Similarity=0.282  Sum_probs=71.6

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +.+||+++|.||++||++|+...+.++++.++++  ++.++.|+.|.       .. ++   . +               
T Consensus        16 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------~~-~~---~-~---------------   66 (104)
T 2vim_A           16 ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ-------NE-EA---A-A---------------   66 (104)
T ss_dssp             TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------CH-HH---H-H---------------
T ss_pred             hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC-------CH-HH---H-H---------------
Confidence            3468999999999999999999999999999986  59999999873       21 11   1 1               


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                            .|             ++.++|+++++ ++|+++.++.| .+.+++.+.|++++
T Consensus        67 ------~~-------------~v~~~Pt~~~~-~~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           67 ------KY-------------SVTAMPTFVFI-KDGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             ------HT-------------TCCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             ------Hc-------------CCccccEEEEE-eCCcEEEEEeC-CCHHHHHHHHHhhC
Confidence                  12             67778997766 59999999999 57888999998875

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.54  E-value=2.3e-14  Score=100.06  Aligned_cols=89  Identities=12%  Similarity=0.180  Sum_probs=72.4

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+|++++|.||++||++|....+.++++.++++  ++.++.|+.|.       .. ++.    +                
T Consensus        24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------~~-~~~----~----------------   73 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE-------LK-AVA----E----------------   73 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------CH-HHH----H----------------
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc-------cH-HHH----H----------------
Confidence            358999999999999999999999999999986  59999998873       22 111    1                


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                           .|             ++.++|+++++ ++|+++.++.| .+.+++.+.|+++++
T Consensus        74 -----~~-------------~v~~~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           74 -----EW-------------NVEAMPTFIFL-KDGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             -----HH-------------HCSSTTEEEEE-ETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             -----hC-------------CCCcccEEEEE-eCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence                 12             67778998887 79999999988 578899999998763

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.54  E-value=1.1e-14  Score=102.69  Aligned_cols=90  Identities=21%  Similarity=0.262  Sum_probs=71.5

Q ss_pred             CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      +++.+||+++|.||++||++|+...|.++++.+++   ++.++.|+.|.       . .++   + ++            
T Consensus        28 l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~-------~-~~~---~-~~------------   80 (117)
T 2xc2_A           28 LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK-------L-EET---A-RK------------   80 (117)
T ss_dssp             HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT-------S-HHH---H-HH------------
T ss_pred             HHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc-------c-HHH---H-HH------------
Confidence            34447899999999999999999999999999887   59999998763       1 111   1 11            


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                               |             ++.++|+++++ ++|+++.++.| .+++++.+.|+++|
T Consensus        81 ---------~-------------~v~~~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           81 ---------Y-------------NISAMPTFIAI-KNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             ---------T-------------TCCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             ---------c-------------CCCccceEEEE-eCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence                     2             77788996666 89999999998 57888999998875

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.54  E-value=2.9e-14  Score=103.83  Aligned_cols=104  Identities=16%  Similarity=0.191  Sum_probs=73.5

Q ss_pred             EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      +.+++++.+...-.+++.+||.||++||++|+...|.++++.++++++ +.++.|++|.       . .++   . +   
T Consensus        35 v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~-------~-~~l---~-~---   98 (140)
T 1v98_A           35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKVNVDE-------H-PGL---A-A---   98 (140)
T ss_dssp             --------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------C-HHH---H-H---
T ss_pred             cccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCC-------C-HHH---H-H---
Confidence            344555555443333434999999999999999999999999999864 9999999873       2 111   1 1   


Q ss_pred             CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          154 AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       154 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                        .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|++++.
T Consensus        99 ------------------~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A           99 ------------------RY-------------GVRSVPTLVLF-RRGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             ------------------HT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             ------------------HC-------------CCCccCEEEEE-eCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence                              12             67778998888 799999999999889999999998863

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.54  E-value=1.6e-14  Score=100.96  Aligned_cols=88  Identities=7%  Similarity=0.126  Sum_probs=71.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++++++|.||++||++|+...|.++++.++++  ++.++.|++|.       . .++   . +                 
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------~-~~l---~-~-----------------   66 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA-------R-PEL---M-K-----------------   66 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG-------C-HHH---H-H-----------------
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC-------C-HHH---H-H-----------------
Confidence            57899999999999999999999999998875  48888888762       1 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+++++.+.|++..
T Consensus        67 ----~~-------------~v~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~~~~~~  105 (110)
T 2l6c_A           67 ----EL-------------GFERVPTLVFI-RDGKVAKVFSGIMNPRELQALYASIH  105 (110)
T ss_dssp             ----HT-------------TCCSSCEEEEE-ESSSEEEEEESCCCHHHHHHHHHTC-
T ss_pred             ----Hc-------------CCcccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHHh
Confidence                12             77788999999 99999999999999999999888653

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.54  E-value=2.3e-14  Score=100.34  Aligned_cols=88  Identities=11%  Similarity=0.157  Sum_probs=71.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.++++  ++.++.|++|.       . .++   + +                 
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~-------~-~~~---~-~-----------------   73 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE-------V-SEV---T-E-----------------   73 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------T-HHH---H-H-----------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC-------C-HHH---H-H-----------------
Confidence            68999999999999999999999999999986  49999999873       1 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        74 ----~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  112 (112)
T 1syr_A           74 ----KE-------------NITSMPTFKVY-KNGSSVDTLLGA-NDSALKQLIEKYAA  112 (112)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHTTC-
T ss_pred             ----Hc-------------CCCcccEEEEE-ECCcEEEEEeCC-CHHHHHHHHHHhhC
Confidence                12             67778986555 799999999998 88999999998864

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.53  E-value=1.9e-14  Score=104.33  Aligned_cols=91  Identities=10%  Similarity=0.064  Sum_probs=75.3

Q ss_pred             CCCEEEEEEcccC--CCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQ--CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~tw--C~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      .++++||+||++|  |++|+...|.|.++.++|+++.+.++-|++|+        ..++   + .+              
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe--------~~~l---A-~~--------------   86 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ--------SEAI---G-DR--------------   86 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH--------HHHH---H-HH--------------
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC--------CHHH---H-HH--------------
Confidence            4568899999999  99999999999999999975448999998762        2222   1 21              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                             |             +|.++||.+++ ++|+++.+..|..+.+++.+.|+++++
T Consensus        87 -------y-------------gV~sIPTlilF-k~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           87 -------F-------------GAFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             -------H-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -------c-------------CCccCCEEEEE-ECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence                   3             88999998888 999999999999999999999998763

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.52  E-value=2.7e-14  Score=102.27  Aligned_cols=105  Identities=6%  Similarity=-0.056  Sum_probs=77.7

Q ss_pred             EEeCCCCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc----CCeEEEEEecCCCCCCCCCCHHHHHHH
Q 027311           73 SVKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN----QGLEILAFPCNQFGAQEPGDNEQIQEF  147 (225)
Q Consensus        73 ~l~~~~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~----~~~~iv~Is~d~~~~~~~~~~~~~~~~  147 (225)
                      .+.+++++.+...-. .+++++|.||++||++|+...|.+.++.+++..    .++.++.|+.|.       . .++   
T Consensus        16 ~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~-------~-~~l---   84 (127)
T 3h79_A           16 RVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK-------Y-PDV---   84 (127)
T ss_dssp             CCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT-------C-HHH---
T ss_pred             ceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc-------c-HhH---
Confidence            344556655543222 489999999999999999999999999998752    348899898763       1 221   


Q ss_pred             HHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE-EEcCCCCChhhHHHHHHhh
Q 027311          148 ACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV-ERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~-~~~~g~~~~~~l~~~l~~l  223 (225)
                      + ++                     |             +|.++|+++++++.|++. ..+.|..+.+++.+.|+++
T Consensus        85 ~-~~---------------------~-------------~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           85 I-ER---------------------M-------------RVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             H-HH---------------------T-------------TCCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             H-Hh---------------------c-------------CCccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            1 11                     2             778899999998877753 5678888899999988764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.52  E-value=6.5e-15  Score=104.39  Aligned_cols=101  Identities=16%  Similarity=0.215  Sum_probs=76.8

Q ss_pred             EeCCCCCeecCCc-c--CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 027311           74 VKDAKGQDVDLSI-Y--KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACT  150 (225)
Q Consensus        74 l~~~~G~~~~l~~-~--~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~  150 (225)
                      +.+.+|+..++.+ .  .||++||.||++||++|+...|.++++.+++  .++.++.|++|.       . .++   . +
T Consensus         5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~-------~-~~~---~-~   70 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK-------N-GNA---A-D   70 (118)
T ss_dssp             SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT-------C-HHH---H-H
T ss_pred             ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC-------C-HHH---H-H
Confidence            3455666666652 2  4899999999999999999999999999998  459999999873       2 111   1 1


Q ss_pred             hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECC---CCcEEEEcCCCCChhhHHHHHHhh
Q 027311          151 RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK---EGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       151 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                                           .|             ++.++|++++++.   +|+++.++.|..+ +++++.+++.
T Consensus        71 ---------------------~~-------------~i~~~Pt~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~  111 (118)
T 2f51_A           71 ---------------------AY-------------GVSSIPALFFVKKEGNEIKTLDQFVGADV-SRIKADIEKF  111 (118)
T ss_dssp             ---------------------HT-------------TCCSSSEEEEEEEETTEEEEEEEEESCCH-HHHHHHHHHH
T ss_pred             ---------------------hc-------------CCCCCCEEEEEeCCCCcceEEEeecCCCH-HHHHHHHHHh
Confidence                                 12             7778899999976   5999999998764 4588877654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.52  E-value=9.9e-15  Score=105.90  Aligned_cols=96  Identities=10%  Similarity=0.109  Sum_probs=71.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++ +++|+||++||++|+.+.|.++++.++++   +.++.|++++.     .+.....+.                   .
T Consensus        31 ~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~-----~~~~~~d~~-------------------~   82 (135)
T 3emx_A           31 QG-DAILAVYSKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSL-----IGERELSAA-------------------R   82 (135)
T ss_dssp             TS-SEEEEEEETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTT-----CCHHHHHHH-------------------H
T ss_pred             CC-cEEEEEECCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCc-----hhhhhhhhh-------------------H
Confidence            44 99999999999999999999999998875   88899988631     111111111                   0


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      .....|             ++.++|++++++ +|+++.++.|..+.+.+++.++++++
T Consensus        83 ~l~~~~-------------~v~~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~i~~~~~  126 (135)
T 3emx_A           83 LEMNKA-------------GVEGTPTLVFYK-EGRIVDKLVGATPWSLKVEKAREIYG  126 (135)
T ss_dssp             HHHHHH-------------TCCSSSEEEEEE-TTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             HHHHHc-------------CCceeCeEEEEc-CCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            012223             888899766665 99999999999999999999988763

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.51  E-value=1.9e-14  Score=105.48  Aligned_cols=89  Identities=9%  Similarity=-0.006  Sum_probs=68.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .||+++|+||++||++|+.+.|.++++.++++++ +.++.|++|.       ..+                         
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~-------~~~-------------------------   68 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDITE-------VPD-------------------------   68 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-------CCT-------------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEcccc-------CHH-------------------------
Confidence            4899999999999999999999999999999765 9999998873       100                         


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEE---------cCCCCC-hhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER---------YAPTTS-PLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~---------~~g~~~-~~~l~~~l~~ll  224 (225)
                       ....|             ++.++|+++++ ++|+++.+         ..|..+ .+++.+.|++++
T Consensus        69 -~~~~~-------------~i~~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~  120 (142)
T 1qgv_A           69 -FNKMY-------------ELYDPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY  120 (142)
T ss_dssp             -TTTSS-------------CSCSSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             -HHHHc-------------CCCCCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence             11112             88889999988 57888874         334443 678888888765

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.51  E-value=4.5e-14  Score=99.36  Aligned_cols=88  Identities=20%  Similarity=0.280  Sum_probs=71.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||+++|.||++||++|+...|.++++.++++  ++.++.|+.|.       . .++   . +                 
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------~-~~~---~-~-----------------   75 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE-------L-KDV---A-E-----------------   75 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------S-HHH---H-H-----------------
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc-------C-HHH---H-H-----------------
Confidence            48999999999999999999999999999986  59999998763       1 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             ++.++|+++++ ++|+++.++.| .+.+++.+.|+++++
T Consensus        76 ----~~-------------~v~~~Pt~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~  114 (118)
T 2vm1_A           76 ----AY-------------NVEAMPTFLFI-KDGEKVDSVVG-GRKDDIHTKIVALMG  114 (118)
T ss_dssp             ----HT-------------TCCSBSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             ----Hc-------------CCCcCcEEEEE-eCCeEEEEecC-CCHHHHHHHHHHHhc
Confidence                12             67778997777 89999999888 478899999988764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.51  E-value=1.5e-14  Score=113.81  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             EEeCCCCCeecCC-ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311           73 SVKDAKGQDVDLS-IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR  151 (225)
Q Consensus        73 ~l~~~~G~~~~l~-~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~  151 (225)
                      ....++.+.+.-. .-++|+++|+||++||++|+.+.|.++++.++++++ +.++.|++|.       +.+         
T Consensus        13 ~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~-------~~~---------   75 (222)
T 3dxb_A           13 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NPG---------   75 (222)
T ss_dssp             CCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CTT---------
T ss_pred             CceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCC-------CHH---------
Confidence            3444555544322 125889999999999999999999999999999876 9999998773       100         


Q ss_pred             cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                       ....|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        76 -----------------l~~~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  118 (222)
T 3dxb_A           76 -----------------TAPKY-------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  118 (222)
T ss_dssp             -----------------TGGGG-------------TCCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             -----------------HHHHc-------------CCCcCCEEEEE-ECCeEEEEeccccChHHHHHHHHhhcc
Confidence                             11123             78889998888 589999999999999999999998763

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.51  E-value=1.4e-14  Score=103.53  Aligned_cols=90  Identities=21%  Similarity=0.273  Sum_probs=70.4

Q ss_pred             CCCEEEEEEcccCCC--------------CChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           88 KGKLLLIVNVASQCG--------------LTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        88 ~gk~vlv~F~~twC~--------------~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      +||+++|.||++||+              +|+...|.++++.++++++ +.++.|++|.       +.            
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~-~~~~~vd~d~-------~~------------   79 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP------------   79 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS-------CT------------
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC-eEEEEEECCC-------CH------------
Confidence            589999999999999              9999999999999998765 9999998773       10            


Q ss_pred             CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          154 AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       154 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                    ...+.|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++|.
T Consensus        80 --------------~l~~~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A           80 --------------GTAPKY-------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             --------------TTGGGG-------------TCCBSSEEEEE-ESSSEEEEEESCCCHHHHHHHHTTTCC
T ss_pred             --------------HHHHHc-------------CCCccCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence                          011223             88889999999 999999999999899999999998763

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.5e-14  Score=105.02  Aligned_cols=91  Identities=16%  Similarity=0.059  Sum_probs=68.5

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +-++++++|.||++||++|+.+.|.++++.+++++.++.++.|++|.       .. ++   + +++++..+        
T Consensus        23 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~-~~---~-~~~~v~~~--------   82 (137)
T 2dj0_A           23 RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR-------YT-DV---S-TRYKVSTS--------   82 (137)
T ss_dssp             HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT-------CH-HH---H-HHTTCCCC--------
T ss_pred             cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc-------CH-HH---H-HHccCccc--------
Confidence            34567999999999999999999999999999987569999998773       22 22   2 33333210        


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHH
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIE  217 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~  217 (225)
                                          .++.++|+++++ ++|+++.++.|..+.+++.
T Consensus        83 --------------------~~~~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~  113 (137)
T 2dj0_A           83 --------------------PLTKQLPTLILF-QGGKEAMRRPQIDKKGRAV  113 (137)
T ss_dssp             --------------------SSSSCSSEEEEE-SSSSEEEEESCBCSSSCBC
T ss_pred             --------------------CCcCCCCEEEEE-ECCEEEEEecCcCchHHHH
Confidence                                045578999988 7899999999877665443

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.50  E-value=3.4e-14  Score=100.50  Aligned_cols=89  Identities=16%  Similarity=0.181  Sum_probs=73.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .|++++|.||++||++|+...|.++++.++++++ +.++.|++|.       .. ++   + +                 
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~-~~---~-~-----------------   78 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD-LTVAKLDVDT-------NP-ET---A-R-----------------   78 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-HH---H-H-----------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC-------CH-HH---H-H-----------------
Confidence            4889999999999999999999999999999764 9999999873       21 11   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        79 ----~~-------------~i~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~l  117 (121)
T 2i1u_A           79 ----NF-------------QVVSIPTLILF-KDGQPVKRIVGAKGKAALLRELSDVV  117 (121)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTCSCC
T ss_pred             ----hc-------------CCCcCCEEEEE-ECCEEEEEecCCCCHHHHHHHHHHHH
Confidence                12             77788998777 69999999999988889999888765

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.50  E-value=4.7e-14  Score=99.67  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +|++++|+||++||++|+...|.+.++.++++.   .+..++++.     ..+.++..++.                   
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~---~v~~~~~~~-----~~~~~~~~~~~-------------------   80 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA---HIYFINSEE-----PSQLNDLQAFR-------------------   80 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC---CCEEEETTC-----GGGHHHHHHHH-------------------
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC---eEEEEECCC-----cCcHHHHHHHH-------------------
Confidence            578999999999999999999999999998763   355566552     00112222222                   


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                         ..|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+
T Consensus        81 ---~~~-------------~i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           81 ---SRY-------------GIPTVPGFVHI-TDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             ---HHH-------------TCCSSCEEEEE-ETTEEEEECCTTCCHHHHHHHHT
T ss_pred             ---HHc-------------CCCCCCeEEEE-ECCEEEEEecCCCCHHHHHHHhh
Confidence               123             78889999988 58999999999888888888775

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.50  E-value=6.1e-14  Score=97.51  Aligned_cols=88  Identities=18%  Similarity=0.239  Sum_probs=71.5

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      +++++|.||++||++|+...|.+.++.+++...  ++.++.|+.|.       . .++   . ++               
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~-~~l---~-~~---------------   73 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA-------E-RNI---C-SK---------------   73 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT-------C-HHH---H-HH---------------
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc-------c-HhH---H-Hh---------------
Confidence            789999999999999999999999999987644  58899998763       2 221   1 11               


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                            |             ++.++|+++++ ++|+++.++.|..+.+++.+.|++.
T Consensus        74 ------~-------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           74 ------Y-------------SVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             ------T-------------TCCSSSEEEEE-ETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             ------c-------------CCCcccEEEEE-eCCcEEEeccCCcCHHHHHHHHHhc
Confidence                  2             77788997777 8899999999999999999988763

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.49  E-value=2.1e-14  Score=101.17  Aligned_cols=91  Identities=16%  Similarity=0.210  Sum_probs=72.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +||+++|.||++||++|+...|.+.++.+++++.  ++.++.|..+.       .                         
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~-------------------------   70 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------E-------------------------   70 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT-------C-------------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC-------C-------------------------
Confidence            6899999999999999999999999999998754  36777776542       0                         


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE--EEcCCCCChhhHHHHHHhhhC
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV--ERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~--~~~~g~~~~~~l~~~l~~ll~  225 (225)
                       ....+.|             ++.++|+++++ ++|+++  .++.|..+.+++.+.|+++++
T Consensus        71 -~~~~~~~-------------~v~~~Pt~~~~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           71 -SDLAQQY-------------GVRGYPTIKFF-RNGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             -CSSHHHH-------------TCCSSSEEEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             -HHHHHHC-------------CCCcccEEEEE-eCCCcCCcccccCccCHHHHHHHHHhccC
Confidence             0112223             78889999999 789877  888898889999999998763

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.49  E-value=1.7e-14  Score=102.45  Aligned_cols=89  Identities=16%  Similarity=0.034  Sum_probs=70.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|+++|.||++||++|+...|.++++.+++++ ++.++.|++|.       .. ++   . +                 
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~-~~---~-~-----------------   69 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA-------YP-QT---C-Q-----------------   69 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT-------CH-HH---H-H-----------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC-------CH-HH---H-H-----------------
Confidence            578999999999999999999999999999986 49999999873       21 11   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC----CChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT----TSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~----~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|++++++++|. +.++.|.    .+.+++.+.|++++
T Consensus        70 ----~~-------------~v~~~Pt~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l  112 (122)
T 3aps_A           70 ----KA-------------GIKAYPSVKLYQYERA-KKSIWEEQINSRDAKTIAALIYGKL  112 (122)
T ss_dssp             ----HT-------------TCCSSSEEEEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHH
T ss_pred             ----Hc-------------CCCccceEEEEeCCCc-cceeeccccCcCCHHHHHHHHHHHH
Confidence                12             7788999999988887 4455543    67889999998876

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.20  E-value=3.9e-15  Score=102.55  Aligned_cols=103  Identities=17%  Similarity=0.273  Sum_probs=77.0

Q ss_pred             EeCCCCCeecCCc-cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 027311           74 VKDAKGQDVDLSI-YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF  152 (225)
Q Consensus        74 l~~~~G~~~~l~~-~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~  152 (225)
                      +.+++++.+.-.- -+||+++|.||++||++|+...+.++++.++++++ +.++.|+.|.        ..+   .     
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~--------~~~---~-----   65 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK-VKVVKVNVDE--------NPN---T-----   65 (106)
Confidence            3344444443221 25789999999999999999999999999998753 8888887652        111   0     


Q ss_pred             CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          153 KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       153 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                       .+.|             ++.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus        66 -----------------~~~~-------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 2yj7_A           66 -----------------AAQY-------------GIRSIPTLLLF-KNGQVVDRLVGAQPKEALKERIDKHL  106 (106)
Confidence                             1112             67778999999 89999999999888889999888764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.46  E-value=1.1e-13  Score=109.54  Aligned_cols=103  Identities=14%  Similarity=0.200  Sum_probs=79.4

Q ss_pred             EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 027311           74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTR  151 (225)
Q Consensus        74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~  151 (225)
                      +..++++.+.....+||+++|+||++||++|+.+.|.+.++++++++++  +.++.|+.|.       . .++   + ++
T Consensus        17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-------~-~~l---~-~~   84 (241)
T 3idv_A           17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS-------A-SVL---A-SR   84 (241)
T ss_dssp             EEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT-------C-HHH---H-HH
T ss_pred             cEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC-------C-HHH---H-Hh
Confidence            4445666565444579999999999999999999999999999998765  8888888763       1 211   1 11


Q ss_pred             cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          152 FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       152 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                           |             ++.++|++++++ +|+++ .+.|..+.+++.+.+++.+
T Consensus        85 ---------------------~-------------~v~~~Pt~~~~~-~g~~~-~~~g~~~~~~l~~~i~~~~  121 (241)
T 3idv_A           85 ---------------------F-------------DVSGYPTIKILK-KGQAV-DYEGSRTQEEIVAKVREVS  121 (241)
T ss_dssp             ---------------------T-------------TCCSSSEEEEEE-TTEEE-ECCSCSCHHHHHHHHHHHH
T ss_pred             ---------------------c-------------CCCcCCEEEEEc-CCCcc-cccCcccHHHHHHHHhhcc
Confidence                                 2             778899999995 67776 5888888999999888764

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.45  E-value=1.2e-13  Score=91.40  Aligned_cols=83  Identities=11%  Similarity=0.103  Sum_probs=65.9

Q ss_pred             EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCch
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAA  170 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  170 (225)
                      +.++.||++||++|+...|.++++.++++++ +.++.|++|.       +.                          ...
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~-------~~--------------------------~~~   48 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIMV-------DR--------------------------EKA   48 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS-CCEEEECTTT-------CG--------------------------GGG
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCC-eEEEEEECCC-------CH--------------------------HHH
Confidence            4688999999999999999999999999754 8999998763       11                          011


Q ss_pred             hhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          171 PLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      +.|             ++.++|++++   +|++  ++.|..+.+++.+.|+++++
T Consensus        49 ~~~-------------~v~~~Pt~~~---~G~~--~~~G~~~~~~l~~~l~~~le   85 (85)
T 1nho_A           49 IEY-------------GLMAVPAIAI---NGVV--RFVGAPSREELFEAINDEME   85 (85)
T ss_dssp             GGT-------------CSSCSSEEEE---TTTE--EEECSSCCHHHHHHHHHHCC
T ss_pred             HhC-------------CceeeCEEEE---CCEE--EEccCCCHHHHHHHHHHHhC
Confidence            112             7888999887   8998  67777788999999998864

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.45  E-value=1.6e-13  Score=90.84  Aligned_cols=83  Identities=10%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCc
Q 027311           90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNA  169 (225)
Q Consensus        90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  169 (225)
                      .++++.||++||++|+...|.++++.+++++ ++.++.|++|+       +.                          ..
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~~--------------------------~~   48 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVME-------NP--------------------------QK   48 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSS-------SC--------------------------CT
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCC-------CH--------------------------HH
Confidence            5789999999999999999999999999974 49999998763       10                          01


Q ss_pred             hhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          170 APLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      .+.|             ++.++|++++   +|++  ++.|..+.+++.+.|+++|
T Consensus        49 ~~~~-------------~v~~~Pt~~~---~G~~--~~~G~~~~~~l~~~l~~~l   85 (85)
T 1fo5_A           49 AMEY-------------GIMAVPTIVI---NGDV--EFIGAPTKEALVEAIKKRL   85 (85)
T ss_dssp             TTST-------------TTCCSSEEEE---TTEE--ECCSSSSSHHHHHHHHHHC
T ss_pred             HHHC-------------CCcccCEEEE---CCEE--eeecCCCHHHHHHHHHHhC
Confidence            1112             7888999877   8987  7888888899999998865

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.42  E-value=6e-14  Score=100.51  Aligned_cols=89  Identities=17%  Similarity=0.212  Sum_probs=70.7

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+||+++|.||++||++|+...|.++++.++++  ++.++.|++|.       ..+                        
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------~~~------------------------   80 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE-------LKE------------------------   80 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT-------SGG------------------------
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc-------hHH------------------------
Confidence            368999999999999999999999999999986  48888887762       111                        


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                        ..+.|             ++.++|+++++ ++|+++.++.| .+.+++.+.|+++++
T Consensus        81 --~~~~~-------------~v~~~Pt~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~  122 (130)
T 1wmj_A           81 --VAEKY-------------NVEAMPTFLFI-KDGAEADKVVG-ARKDDLQNTIVKHVG  122 (130)
T ss_dssp             --GHHHH-------------TCCSSCCCCBC-TTTTCCBCCCT-TCTTTHHHHHHHHTS
T ss_pred             --HHHHc-------------CCCccceEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHHh
Confidence              11123             77788986666 89999988888 477899999988763

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.41  E-value=9.2e-14  Score=102.72  Aligned_cols=77  Identities=12%  Similarity=0.094  Sum_probs=54.0

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHH--HHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYD--KYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~--~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      ..||+|+|+|||+||++|+...|.+.+..+  ++.+  ..++.|.+|+    +  ..+                      
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~----e--~~~----------------------   91 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMH----E--TTD----------------------   91 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESS----C--CSC----------------------
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecC----C--chh----------------------
Confidence            369999999999999999999998886422  2222  2345555542    0  000                      


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                          ....|             ++.++|+++++|++|+++.+..|.
T Consensus        92 ----~~~~~-------------~v~~~PT~~f~~~~G~~v~~~~G~  120 (151)
T 3ph9_A           92 ----KNLSP-------------DGQYVPRIMFVDPSLTVRADIAGR  120 (151)
T ss_dssp             ----GGGCT-------------TCCCSSEEEEECTTSCBCTTCCCS
T ss_pred             ----hHhhc-------------CCCCCCEEEEECCCCCEEEEEeCC
Confidence                00011             667789999999999999999887

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.40  E-value=4.9e-13  Score=100.84  Aligned_cols=105  Identities=5%  Similarity=-0.049  Sum_probs=67.9

Q ss_pred             CeecCCccCCCEEEEEEcccCCCCChHhHHH---HHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 027311           80 QDVDLSIYKGKLLLIVNVASQCGLTNSNYTE---LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF  156 (225)
Q Consensus        80 ~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~---l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (225)
                      +.+.....+||+|+|+||++||++|+...+.   ..++.+.+.+ ++.++.|..|+       .++-...|. +.     
T Consensus        30 ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de-------~~~l~~~y~-~~-----   95 (173)
T 3ira_A           30 EAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREE-------RPDIDNIYM-TV-----   95 (173)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTT-------CHHHHHHHH-HH-----
T ss_pred             HHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcc-------cCcHHHHHH-HH-----
Confidence            3445555679999999999999999997773   2456666654 37888887663       333223332 10     


Q ss_pred             ceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC-----CCChhhHHHHHHhh
Q 027311          157 PIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP-----TTSPLSIEVVLECL  223 (225)
Q Consensus       157 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g-----~~~~~~l~~~l~~l  223 (225)
                                  .+.++             ++.++|+++++|++|++++....     ....+.+.+.|+++
T Consensus        96 ------------~q~~~-------------gv~g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v  142 (173)
T 3ira_A           96 ------------CQIIL-------------GRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRI  142 (173)
T ss_dssp             ------------HHHHH-------------SCCCSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHH
T ss_pred             ------------HHHHc-------------CCCCCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHH
Confidence                        11122             78889999999999999987321     11223465555554

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.40  E-value=5.2e-13  Score=96.81  Aligned_cols=84  Identities=15%  Similarity=0.085  Sum_probs=67.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +||++||+||++||++|+...|.+.++.+++.  ++.++.|++|.       ..                          
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~-------~~--------------------------   73 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNS-------CI--------------------------   73 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSS-------SC--------------------------
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhc-------Cc--------------------------
Confidence            46899999999999999999999999999985  48888888763       00                          


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC-------ChhhHHHHHHhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-------SPLSIEVVLECL  223 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~-------~~~~l~~~l~~l  223 (225)
                         ..|             ++.++|++++++ +|+++.++.|..       +.+++++.|++.
T Consensus        74 ---~~~-------------~i~~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           74 ---EHY-------------HDNCLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             ---SSC-------------CSSCCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             ---ccC-------------CCCCCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence               012             788899999885 999999988865       567777777654

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.40  E-value=1.8e-12  Score=101.60  Aligned_cols=91  Identities=8%  Similarity=-0.045  Sum_probs=72.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc---CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN---QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~---~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      .+++++|.||++||++|+.+.|.++++++++++   .++.++.|++|.       . .++   . +              
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~-------~-~~l---~-~--------------  186 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-------Y-PEW---A-D--------------  186 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-------C-HHH---H-H--------------
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc-------C-HHH---H-H--------------
Confidence            344559999999999999999999999999983   359999998762       1 111   1 1              


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                             .|             ++.++|+++++ ++|+.+.++.|..+.+++.+.|++++.
T Consensus       187 -------~~-------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  226 (226)
T 1a8l_A          187 -------QY-------------NVMAVPKIVIQ-VNGEDRVEFEGAYPEKMFLEKLLSALS  226 (226)
T ss_dssp             -------HT-------------TCCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -------hC-------------CCcccCeEEEE-eCCceeEEEcCCCCHHHHHHHHHHhhC
Confidence                   12             78889996666 799999999999999999999988763

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.39  E-value=3.7e-13  Score=98.54  Aligned_cols=88  Identities=6%  Similarity=0.091  Sum_probs=62.5

Q ss_pred             CCEEEEEEcccC--CCCChHhHHHHHHHHHHHhcCCeE--EEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           89 GKLLLIVNVASQ--CGLTNSNYTELSQLYDKYKNQGLE--ILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        89 gk~vlv~F~~tw--C~~C~~~~~~l~~l~~~~~~~~~~--iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      ++.+||+||++|  |++|+...|.++++.++| + ++.  ++.|++|.        .   .+.+ +              
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~--------~---~~la-~--------------   85 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQ--------S---EAIG-D--------------   85 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHH--------H---HHHH-H--------------
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCC--------C---HHHH-H--------------
Confidence            345777899887  999999999999999999 4 377  88887651        1   1111 1              


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                             .|             +|.++|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        86 -------~~-------------~V~~iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~  125 (142)
T 2es7_A           86 -------RF-------------NVRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVD  125 (142)
T ss_dssp             -------TT-------------TCCSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             -------hc-------------CCCcCCeEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence                   12             88889999999 999999999999888999999988763

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.35  E-value=2e-12  Score=113.46  Aligned_cols=107  Identities=12%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             EeCCCCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc--CCeEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 027311           74 VKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPGDNEQIQEFACT  150 (225)
Q Consensus        74 l~~~~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~--~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~  150 (225)
                      +..++++.+...-. .||+++|+|||+||++|+.++|.++++++++++  .++.++.|++|.      +...+   .+ +
T Consensus        14 V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~------d~~~~---l~-~   83 (519)
T 3t58_A           14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE------ETNSA---VC-R   83 (519)
T ss_dssp             SEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS------GGGHH---HH-H
T ss_pred             cEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc------cccHH---HH-H
Confidence            33444544433222 368999999999999999999999999999986  359999999862      01111   11 1


Q ss_pred             hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECC---CCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          151 RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK---EGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       151 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                           .|             +|.++|+++++++   +|+++..+.|..+.+++.+.|++++
T Consensus        84 ---------------------~~-------------~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l  126 (519)
T 3t58_A           84 ---------------------EF-------------NIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDAL  126 (519)
T ss_dssp             ---------------------HT-------------TCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             ---------------------Hc-------------CCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHH
Confidence                                 12             7888999999998   8888888888888999999998876

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.33  E-value=4.3e-12  Score=100.89  Aligned_cols=91  Identities=16%  Similarity=0.110  Sum_probs=69.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc--CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~--~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      .+++++|.||++||++|+...|.++++++++++  .++.++.|+++.      +...++   + +               
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~------~~~~~l---~-~---------------   83 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE------ETNSAV---C-R---------------   83 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS------TTTHHH---H-H---------------
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc------hhhHHH---H-H---------------
Confidence            468999999999999999999999999999986  359999999852      011111   1 1               


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCC-----CcEEEEcCCCCChhhHHHHHHhhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-----GNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-----G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                            .|             +|.++|+++++++.     |..+ ++.| .+.+++.+.|.+++
T Consensus        84 ------~~-------------~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l  126 (244)
T 3q6o_A           84 ------DF-------------NIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDAL  126 (244)
T ss_dssp             ------HT-------------TCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHH
T ss_pred             ------Hc-------------CCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHH
Confidence                  12             78889999999872     4444 5555 57888888888765

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.33  E-value=1.1e-11  Score=98.59  Aligned_cols=110  Identities=10%  Similarity=0.076  Sum_probs=79.1

Q ss_pred             CCCceecCeE--EeCCCCCeecCC--------ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc---CCeEEEEEec
Q 027311           64 QSKTSVHDFS--VKDAKGQDVDLS--------IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN---QGLEILAFPC  130 (225)
Q Consensus        64 ~~g~~~p~f~--l~~~~G~~~~l~--------~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~---~~~~iv~Is~  130 (225)
                      ..+..+++|.  +.+..|....++        +++|+++++.||++||++|+...|.++++..++++   .++.+..|.+
T Consensus       103 ~~~~~l~~fv~~~l~~~~~~~~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~  182 (243)
T 2hls_A          103 PAGEEIRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEA  182 (243)
T ss_dssp             CCTTHHHHHHHHHHHHHTTCCCCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEET
T ss_pred             CcHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEEC
Confidence            3455555552  223345555555        35788999999999999999999999999999842   4688888887


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                      +.       .. ++   + +                     .|             +|.++|++++   +|+++  +.|.
T Consensus       183 ~~-------~~-~~---~-~---------------------~~-------------~V~~vPt~~i---~G~~~--~~G~  211 (243)
T 2hls_A          183 YE-------NP-DI---A-D---------------------KY-------------GVMSVPSIAI---NGYLV--FVGV  211 (243)
T ss_dssp             TT-------CH-HH---H-H---------------------HT-------------TCCSSSEEEE---TTEEE--EESC
T ss_pred             cc-------CH-HH---H-H---------------------Hc-------------CCeeeCeEEE---CCEEE--EeCC
Confidence            63       11 11   1 1                     12             7778899888   78875  6788


Q ss_pred             CChhhHHHHHHhhh
Q 027311          211 TSPLSIEVVLECLC  224 (225)
Q Consensus       211 ~~~~~l~~~l~~ll  224 (225)
                      .+.+++.+.|++.+
T Consensus       212 ~~~~~l~~~l~~~~  225 (243)
T 2hls_A          212 PYEEDFLDYVKSAA  225 (243)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            88889999988765

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.32  E-value=3.4e-12  Score=90.41  Aligned_cols=82  Identities=16%  Similarity=0.094  Sum_probs=66.3

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      ++++||+||++||++|+...|.|+++.++|++  +.++.|++|.       .       . +                  
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~--v~f~kvd~d~-------~-------~-~------------------   67 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE--TKFVKAIVNS-------C-------I-Q------------------   67 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT--SEEEEEEGGG-------T-------S-T------------------
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--CEEEEEEhHH-------h-------H-H------------------
Confidence            45999999999999999999999999999863  8999998762       0       0 0                  


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC-------ChhhHHHHHHh
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-------SPLSIEVVLEC  222 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~-------~~~~l~~~l~~  222 (225)
                         .|             ++.++|+.+++ ++|+.+.+..|..       +.++++..|.+
T Consensus        68 ---~~-------------~v~~~PT~~~f-k~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           68 ---HY-------------HDNCLPTIFVY-KNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             ---TC-------------CGGGCSEEEEE-ETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             ---HC-------------CCCCCCEEEEE-ECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence               12             78889998888 8999999988754       46677777765

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.27  E-value=3.5e-11  Score=78.02  Aligned_cols=74  Identities=9%  Similarity=-0.019  Sum_probs=55.1

Q ss_pred             EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchh
Q 027311           92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAP  171 (225)
Q Consensus        92 vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  171 (225)
                      ..|+||++||++|+...|.++++.++++.+ +.++.|+ +          .+   .. +                     
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~-~~~~~v~-~----------~~---~~-~---------------------   44 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGID-AEFEKIK-E----------MD---QI-L---------------------   44 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCC-EEEEEEC-S----------HH---HH-H---------------------
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCc-eEEEEec-C----------HH---HH-H---------------------
Confidence            358899999999999999999999998754 8887774 1          11   11 1                     


Q ss_pred             hhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC-ChhhHHHHH
Q 027311          172 LYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-SPLSIEVVL  220 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~-~~~~l~~~l  220 (225)
                      .|             ++.++|++++   +|+++.+  |.. +.+++.+.|
T Consensus        45 ~~-------------~v~~~Pt~~~---~G~~~~~--G~~~~~~~l~~~l   76 (77)
T 1ilo_A           45 EA-------------GLTALPGLAV---DGELKIM--GRVASKEEIKKIL   76 (77)
T ss_dssp             HH-------------TCSSSSCEEE---TTEEEEC--SSCCCHHHHHHHC
T ss_pred             HC-------------CCCcCCEEEE---CCEEEEc--CCCCCHHHHHHHh
Confidence            12             7788899877   8998877  665 677776653

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.26  E-value=5.6e-12  Score=89.72  Aligned_cols=95  Identities=9%  Similarity=0.043  Sum_probs=66.4

Q ss_pred             ccCCCEEEEEEccc-------CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 027311           86 IYKGKLLLIVNVAS-------QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPI  158 (225)
Q Consensus        86 ~~~gk~vlv~F~~t-------wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (225)
                      +.+||+++|.||++       ||++|+...|.++++.+++++ ++.++.|++++        ...   +.          
T Consensus        21 ~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~--------~~~---~~----------   78 (123)
T 1wou_A           21 QHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGE--------KPY---WK----------   78 (123)
T ss_dssp             TTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCC--------HHH---HH----------
T ss_pred             HhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCC--------chh---hh----------
Confidence            34589999999999       999999999999999998875 49999999862        211   10          


Q ss_pred             eeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          159 FDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       159 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                          |.. ......|             ++.++|+++++++.+++. ...+ .+++++++.|++
T Consensus        79 ----d~~-~~~~~~~-------------~i~~~Pt~~~~~~~~~~~-g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           79 ----DPN-NDFRKNL-------------KVTAVPTLLKYGTPQKLV-ESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             ----CTT-CHHHHHH-------------CCCSSSEEEETTSSCEEE-GGGG-GCHHHHHHHHHC
T ss_pred             ----chh-HHHHHHC-------------CCCeeCEEEEEcCCceEe-cccc-CCHHHHHHHHhc
Confidence                111 1122223             889999999998844443 3333 456677776653

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.26  E-value=1.3e-11  Score=85.66  Aligned_cols=86  Identities=9%  Similarity=0.259  Sum_probs=66.6

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +++++|+|+++||++|+...|.++++.++   .++.++-|.+|        ....+...+.++                 
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~---~~v~~~~vdVd--------e~r~~Sn~IA~~-----------------   75 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE---RDMDGYYLIVQ--------QERDLSDYIAKK-----------------   75 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGG--------GGHHHHHHHHHH-----------------
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc---CCceEEEEEee--------cCchhhHHHHHH-----------------
Confidence            78999999999999999999999999884   34888888887        334443333222                 


Q ss_pred             chhhhhhccccCCCCCCCcccc-ceeEEEECCCCcEEEE-cCCCCChhhHHHHH
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKW-NFSKFLVDKEGNVVER-YAPTTSPLSIEVVL  220 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~-~P~~~lid~~G~I~~~-~~g~~~~~~l~~~l  220 (225)
                          |             +|.+ .|+.+++ ++|++++. .++..+.+.+++.|
T Consensus        76 ----~-------------~V~h~sPq~il~-k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           76 ----T-------------NVKHESPQAFYF-VNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             ----H-------------TCCCCSSEEEEE-ETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             ----h-------------CCccCCCeEEEE-ECCEEEEEeeccccCHHHHHHhh
Confidence                2             7885 8999999 99999998 55667777777654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.26  E-value=9.8e-12  Score=105.27  Aligned_cols=104  Identities=17%  Similarity=0.239  Sum_probs=77.2

Q ss_pred             EeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc-----CCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           74 VKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN-----QGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        74 l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-----~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      +.+++++.+...--++++++|.||++||++|+...|.++++.+++++     .++.++.|++|.       . .++   +
T Consensus         7 v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~-------~-~~l---~   75 (382)
T 2r2j_A            7 ITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ-------H-SDI---A   75 (382)
T ss_dssp             -CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT-------C-HHH---H
T ss_pred             eEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc-------c-HHH---H
Confidence            34455554442212578999999999999999999999999999953     248899998763       1 111   1


Q ss_pred             HhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEE-cCCCCChhhHHHHHHhhh
Q 027311          149 CTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER-YAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       149 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~-~~g~~~~~~l~~~l~~ll  224 (225)
                       ++                     |             +|.++|+++++ ++|+++.+ +.|..+.+.+.+.|.+.+
T Consensus        76 -~~---------------------~-------------~v~~~Pt~~~f-~~G~~~~~~~~G~~~~~~l~~~i~~~~  116 (382)
T 2r2j_A           76 -QR---------------------Y-------------RISKYPTLKLF-RNGMMMKREYRGQRSVKALADYIRQQK  116 (382)
T ss_dssp             -HH---------------------T-------------TCCEESEEEEE-ETTEEEEEECCSCCSHHHHHHHHHHHH
T ss_pred             -Hh---------------------c-------------CCCcCCEEEEE-eCCcEeeeeecCcchHHHHHHHHHHhc
Confidence             11                     2             77888998877 68998874 889888999999988765

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.25  E-value=2.7e-12  Score=90.19  Aligned_cols=92  Identities=11%  Similarity=0.030  Sum_probs=63.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHH-hcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKY-KNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~-~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      +...+||+||++||++|+..-+.+...++.. ..+.+.++.|.++.       +.                        .
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~-------~~------------------------~   65 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRD-------PL------------------------P   65 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTS-------CC------------------------C
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCC-------CC------------------------c
Confidence            4568999999999999997765444332211 01125666676653       00                        0


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ......|             +|.++||+++++ +|+.+.+..|..+++++.+.|++++
T Consensus        66 ~~la~~~-------------~V~g~PT~i~f~-~G~ev~Ri~G~~~~~~f~~~L~~~l  109 (116)
T 3dml_A           66 PGLELAR-------------PVTFTPTFVLMA-GDVESGRLEGYPGEDFFWPMLARLI  109 (116)
T ss_dssp             TTCBCSS-------------CCCSSSEEEEEE-TTEEEEEEECCCCHHHHHHHHHHHH
T ss_pred             hhHHHHC-------------CCCCCCEEEEEE-CCEEEeeecCCCCHHHHHHHHHHHH
Confidence            0011112             788899999998 9999999999999999999998875

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.25  E-value=2.5e-11  Score=99.45  Aligned_cols=92  Identities=12%  Similarity=0.142  Sum_probs=71.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++++|.||++||++|+.+.|.+.++.+++++. +.++.|++|..      ...+   .+ ++                
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~~------~~~~---l~-~~----------------   86 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLN------KNKA---LC-AK----------------   86 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTST------TTHH---HH-HH----------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccCc------cCHH---HH-Hh----------------
Confidence            4789999999999999999999999999999865 99999998730      1111   11 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCC----------------cEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG----------------NVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G----------------~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           |             +|.++|+++++++.+                .....+.|..+.+.+.+.+.+.+
T Consensus        87 -----~-------------~I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~  141 (298)
T 3ed3_A           87 -----Y-------------DVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI  141 (298)
T ss_dssp             -----T-------------TCCBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred             -----C-------------CCCccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence                 2             778889999997643                14567888888888988887654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.25  E-value=1.9e-11  Score=96.47  Aligned_cols=89  Identities=10%  Similarity=0.176  Sum_probs=71.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      .+++++|.||++||++|+...|.+.++.+++++++  +.++.|..+.       . .++.    ++              
T Consensus       146 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~-------~-~~l~----~~--------------  199 (241)
T 3idv_A          146 DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-------E-TDLA----KR--------------  199 (241)
T ss_dssp             HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT-------C-HHHH----HH--------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC-------C-HHHH----HH--------------
Confidence            57899999999999999999999999999998654  8888888763       2 2211    11              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                             |             +|.++|++++++ +|+.+. +.|..+.+++.+.|++.+
T Consensus       200 -------~-------------~v~~~Pt~~~~~-~g~~~~-~~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          200 -------F-------------DVSGYPTLKIFR-KGRPYD-YNGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             -------T-------------TCCSSSEEEEEE-TTEEEE-CCSCCSHHHHHHHHHHHT
T ss_pred             -------c-------------CCcccCEEEEEE-CCeEEE-ecCCCCHHHHHHHHHhhh
Confidence                   2             777889988885 588776 788888999999988764

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.24  E-value=1.2e-11  Score=107.53  Aligned_cols=102  Identities=13%  Similarity=0.152  Sum_probs=77.5

Q ss_pred             CCCCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           76 DAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        76 ~~~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      ..+|+.+..... .||+++|.||++||++|+.++|.+.++.+++++. ++.++.|..+.       +            .
T Consensus       356 ~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~-------~------------~  416 (481)
T 3f8u_A          356 VVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-------N------------D  416 (481)
T ss_dssp             EECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTS-------S------------C
T ss_pred             EecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCc-------h------------h
Confidence            345554432222 4899999999999999999999999999999875 68888887652       0            0


Q ss_pred             CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE-EEEcCCCCChhhHHHHHHhhh
Q 027311          154 AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV-VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       154 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I-~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                     ....|             ++.++|+++++++.|++ +.++.|..+.+++.+.|++.+
T Consensus       417 ---------------~~~~~-------------~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  460 (481)
T 3f8u_A          417 ---------------VPSPY-------------EVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA  460 (481)
T ss_dssp             ---------------CCTTC-------------CCCSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHC
T ss_pred             ---------------hHhhC-------------CCcccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhc
Confidence                           00112             78889999999988874 567888888999999888754

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.23  E-value=4.3e-11  Score=100.09  Aligned_cols=88  Identities=9%  Similarity=0.076  Sum_probs=70.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHH-------HHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceee
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTE-------LSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFD  160 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~-------l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (225)
                      ++++++|.|||+||+ |+..+|.       ++++.+++++.++.++.|++|.       . .++.    +          
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~-------~-~~l~----~----------   83 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK-------E-AKLA----K----------   83 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT-------T-HHHH----H----------
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC-------C-HHHH----H----------
Confidence            478999999999999 9988898       8899999987679999999873       2 2211    1          


Q ss_pred             eecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          161 KVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                 .|             +|.++|+++++ ++|++ ..+.|..+.+.+.+.+++.+
T Consensus        84 -----------~~-------------~v~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~~~~  121 (350)
T 1sji_A           84 -----------KL-------------GFDEEGSLYVL-KGDRT-IEFDGEFAADVLVEFLLDLI  121 (350)
T ss_dssp             -----------HH-------------TCCSTTEEEEE-ETTEE-EEECSCCCHHHHHHHHHTTS
T ss_pred             -----------hc-------------CCCccceEEEE-ECCcE-EEecCCCCHHHHHHHHHHhc
Confidence                       12             77888999999 78884 57888888999999888764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.23  E-value=2.4e-11  Score=96.65  Aligned_cols=85  Identities=12%  Similarity=0.098  Sum_probs=64.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +|++|||+||++||++|+...|.+.+++++|++  +.++.|+++          +  .    .       +         
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~--v~f~kVd~d----------~--~----~-------l---------  177 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM--VKFCKIKAS----------N--T----G-------A---------  177 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT--SEEEEEEHH----------H--H----C-------C---------
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC--CEEEEEeCC----------c--H----H-------H---------
Confidence            489999999999999999999999999999964  899988753          1  0    0       0         


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC-------hhhHHHHHHh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS-------PLSIEVVLEC  222 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~-------~~~l~~~l~~  222 (225)
                        ...|             ++.++|+++++ ++|+++.++.|...       .+.++..|.+
T Consensus       178 --~~~~-------------~I~~~PTll~~-~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~  223 (245)
T 1a0r_P          178 --GDRF-------------SSDVLPTLLVY-KGGELLSNFISVTEQLAEEFFTGDVESFLNE  223 (245)
T ss_dssp             --TTSS-------------CTTTCSEEEEE-ETTEEEEEETTGGGGSCTTCCHHHHHHHHHT
T ss_pred             --HHHC-------------CCCCCCEEEEE-ECCEEEEEEeCCcccccccccHHHHHHHHHH
Confidence              0112             78889998877 59999999888532       2356666654

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.19  E-value=5.1e-13  Score=92.91  Aligned_cols=40  Identities=13%  Similarity=0.046  Sum_probs=34.6

Q ss_pred             CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHh
Q 027311           80 QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK  119 (225)
Q Consensus        80 ~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~  119 (225)
                      ..+++++..||++||.||++||++|+...|.++++.++++
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~   42 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP   42 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence            4567778889999999999999999999999999886654

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.17  E-value=2.7e-11  Score=94.79  Aligned_cols=85  Identities=12%  Similarity=0.120  Sum_probs=66.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +|+++||.||++||++|+...|.+.++.++|+  ++.++.|+++             .    ..       +        
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~-------------~----~~-------l--------  164 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS-------------N----TG-------A--------  164 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH-------------H----HT-------C--------
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC-------------c----HH-------H--------
Confidence            46899999999999999999999999999985  4899888742             0    10       0        


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCCh-------hhHHHHHHh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP-------LSIEVVLEC  222 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~-------~~l~~~l~~  222 (225)
                        ...|             ++.++|+++++ ++|+++.++.|..+.       ++|+..|.+
T Consensus       165 --~~~~-------------~i~~~PTl~~~-~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~  210 (217)
T 2trc_P          165 --GDRF-------------SSDVLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNE  210 (217)
T ss_dssp             --STTS-------------CGGGCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred             --HHHC-------------CCCCCCEEEEE-ECCEEEEEEeCCcccCcccCCHHHHHHHHHH
Confidence              0112             78889999888 599999999886654       677777765

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.17  E-value=4.3e-11  Score=104.80  Aligned_cols=90  Identities=13%  Similarity=0.162  Sum_probs=73.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++++++|.||++||++|+...|.+.++.+++++.++.++.|+++.       . .+   .+ ++                
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~-------~-~~---l~-~~----------------   81 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-------N-QD---LC-ME----------------   81 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT-------C-HH---HH-HH----------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC-------C-HH---HH-Hh----------------
Confidence            588999999999999999999999999999987679999999873       2 11   11 21                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcE--EEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV--VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I--~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           |             +|.++|+++++. +|+.  +..+.|..+.+.+.+.|.+.+
T Consensus        82 -----~-------------~v~~~Pt~~~~~-~g~~~~~~~~~G~~~~~~l~~~l~~~~  121 (504)
T 2b5e_A           82 -----H-------------NIPGFPSLKIFK-NSDVNNSIDYEGPRTAEAIVQFMIKQS  121 (504)
T ss_dssp             -----T-------------TCCSSSEEEEEE-TTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             -----c-------------CCCcCCEEEEEe-CCccccceeecCCCCHHHHHHHHHHhc
Confidence                 2             778889999984 5775  778899888999999988765

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.17  E-value=9.3e-11  Score=92.07  Aligned_cols=85  Identities=8%  Similarity=0.059  Sum_probs=66.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++++++.||++||++|+...|.++++..+++  ++.++.|++|.       . .++   + +                 
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~-------~-~~l---~-~-----------------  183 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDASE-------N-QDL---A-E-----------------  183 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGG-------C-HHH---H-H-----------------
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCC-------C-HHH---H-H-----------------
Confidence            35566889999999999999999999999983  59999998762       1 111   1 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|++++   +|+ +.++.|..+.+++.+.|++++
T Consensus       184 ----~~-------------~v~~~Pt~~~---~G~-~~~~~G~~~~~~l~~~l~~~~  219 (229)
T 2ywm_A          184 ----QF-------------QVVGVPKIVI---NKG-VAEFVGAQPENAFLGYIMAVY  219 (229)
T ss_dssp             ----HT-------------TCCSSSEEEE---GGG-TEEEESCCCHHHHHHHHHHHH
T ss_pred             ----Hc-------------CCcccCEEEE---CCE-EEEeeCCCCHHHHHHHHHHHh
Confidence                12             7788899887   788 466888888888998888765

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.17  E-value=7.1e-11  Score=108.56  Aligned_cols=93  Identities=16%  Similarity=0.170  Sum_probs=74.5

Q ss_pred             CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           84 LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        84 l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      +.+++|++++|.||++||++|+.++|.+++++++++++ +.++.|++|+       . .++.    +             
T Consensus       450 ~~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~-v~~~~vd~~~-------~-~~~~----~-------------  503 (780)
T 3apo_A          450 FPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-LKVGTLDCTI-------H-EGLC----N-------------  503 (780)
T ss_dssp             SCTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------C-HHHH----H-------------
T ss_pred             HHHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEeCCC-------C-HHHH----H-------------
Confidence            34458999999999999999999999999999999864 9999998763       2 2111    1             


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                              .|             ++.++|+++++ ++|++ ..+.|..+.+++.+.++++++
T Consensus       504 --------~~-------------~v~~~Pt~~~~-~~g~~-~~~~g~~~~~~l~~fi~~~~~  542 (780)
T 3apo_A          504 --------MY-------------NIQAYPTTVVF-NQSSI-HEYEGHHSAEQILEFIEDLRN  542 (780)
T ss_dssp             --------HT-------------TCCSSSEEEEE-ETTEE-EEECSCSCHHHHHHHHHHHHS
T ss_pred             --------Hc-------------CCCcCCeEEEE-cCCce-eeecCcccHHHHHHHHHhhcc
Confidence                    12             77778999999 55877 778888888999999988763

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.15  E-value=1.2e-10  Score=100.39  Aligned_cols=59  Identities=17%  Similarity=0.202  Sum_probs=45.2

Q ss_pred             EeCCCCCeec--CCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-------CeEEEEEecCC
Q 027311           74 VKDAKGQDVD--LSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-------GLEILAFPCNQ  132 (225)
Q Consensus        74 l~~~~G~~~~--l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-------~~~iv~Is~d~  132 (225)
                      +..++++.+.  +..-++|++||+|||+||++|+.+.|.+.+++++++++       .+.++.|++|.
T Consensus        25 V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~   92 (470)
T 3qcp_A           25 VVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCAS   92 (470)
T ss_dssp             EEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTT
T ss_pred             cEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCC
Confidence            3444444443  22234589999999999999999999999999999743       28999999873

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.15  E-value=8.7e-11  Score=102.18  Aligned_cols=89  Identities=16%  Similarity=0.234  Sum_probs=73.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +|++++|.||++||++|+...|.+.++.+++++. +.++.|+++.        ..++   + ++                
T Consensus        20 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~--------~~~l---~-~~----------------   70 (481)
T 3f8u_A           20 SAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA--------NTNT---C-NK----------------   70 (481)
T ss_dssp             SSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT--------CHHH---H-HH----------------
T ss_pred             CCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC--------CHHH---H-Hh----------------
Confidence            3589999999999999999999999999999877 8899998773        1221   1 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           |             +|.++|+.+++ ++|+++.++.|..+.+.+.+.+.+.+
T Consensus        71 -----~-------------~v~~~Ptl~~~-~~g~~~~~~~G~~~~~~l~~~~~~~~  108 (481)
T 3f8u_A           71 -----Y-------------GVSGYPTLKIF-RDGEEAGAYDGPRTADGIVSHLKKQA  108 (481)
T ss_dssp             -----T-------------TCCEESEEEEE-ETTEEEEECCSCSSHHHHHHHHHHHT
T ss_pred             -----c-------------CCCCCCEEEEE-eCCceeeeecCccCHHHHHHHHHhhc
Confidence                 2             78888988877 78988899999999999999988765

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.12  E-value=6.6e-10  Score=82.06  Aligned_cols=91  Identities=10%  Similarity=0.032  Sum_probs=65.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      +||+++|+|+++||..|+..-...   .++.+.+.+ ++.++.+.+|        +. +-.++. +              
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~--------~~-~~~~l~-~--------------   95 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHD--------SE-EGQRYI-Q--------------   95 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESS--------SH-HHHHHH-H--------------
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecC--------CH-hHHHHH-H--------------
Confidence            589999999999999999765544   345554443 4888888765        22 222332 2              


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhhh
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                             .|             ++.++|+++++|++ |+.+....| .+++++.+.|++.+
T Consensus        96 -------~y-------------~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A           96 -------FY-------------KLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             -------HH-------------TCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHH
T ss_pred             -------Hc-------------CCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHH
Confidence                   23             66778999999999 877777666 78999998888765

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.10  E-value=1.8e-10  Score=96.57  Aligned_cols=88  Identities=14%  Similarity=0.119  Sum_probs=69.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      ++|+++|.||++||++|+...|.+.++.++++++ ++.++.|..+.       +.                         
T Consensus       266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~-------~~-------------------------  313 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA-------NE-------------------------  313 (361)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTT-------CB-------------------------
T ss_pred             CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCc-------cc-------------------------
Confidence            5899999999999999999999999999999865 57777776542       00                         


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEcCCCCChhhHHHHHHhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                        . ..|             +|.++|++++++++ |+...++.|..+.+++.+.|++-
T Consensus       314 --~-~~~-------------~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~  355 (361)
T 3uem_A          314 --V-EAV-------------KVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESG  355 (361)
T ss_dssp             --C-SSC-------------CCCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHTTT
T ss_pred             --h-hhc-------------CCcccCeEEEEECCCCcceeEecCCCCHHHHHHHHHhc
Confidence              0 012             78889999999655 67778899988888888888753

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.10  E-value=7.8e-11  Score=103.13  Aligned_cols=102  Identities=19%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             EeCCCCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHh-c-CCeEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 027311           74 VKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYK-N-QGLEILAFPCNQFGAQEPGDNEQIQEFACT  150 (225)
Q Consensus        74 l~~~~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~-~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~  150 (225)
                      +..++|+.+...-. .||++||.||++||++|+...|.+.++.++++ . .++.++.|..+.                  
T Consensus       360 v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~------------------  421 (504)
T 2b5e_A          360 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE------------------  421 (504)
T ss_dssp             EEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG------------------
T ss_pred             ceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCc------------------
Confidence            44445555443222 58999999999999999999999999999997 3 247777776431                  


Q ss_pred             hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE--EEEcCCCCChhhHHHHHHhhh
Q 027311          151 RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV--VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       151 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I--~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      .           +     ... |             ++.++||++++ ++|+.  +.++.|..+.+++.+.|++.+
T Consensus       422 ~-----------~-----~~~-~-------------~v~~~Pt~~~~-~~G~~~~~~~~~G~~~~~~l~~~i~~~~  466 (504)
T 2b5e_A          422 N-----------D-----VRG-V-------------VIEGYPTIVLY-PGGKKSESVVYQGSRSLDSLFDFIKENG  466 (504)
T ss_dssp             C-----------C-----CSS-C-------------CCSSSSEEEEE-CCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred             c-----------c-----ccc-C-------------CceecCeEEEE-eCCceecceEecCCCCHHHHHHHHHhcC
Confidence            0           0     001 2             78889999888 78876  667888888889999888764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.07  E-value=8e-11  Score=108.20  Aligned_cols=89  Identities=13%  Similarity=0.024  Sum_probs=71.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .||+++|.||++||++|+...|.++++.++++++ +.++.|++|.       . ..+   + ++                
T Consensus       674 ~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~-~~~~~vd~~~-------~-~~~---~-~~----------------  724 (780)
T 3apo_A          674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK-VRAGKVDCQA-------Y-PQT---C-QK----------------  724 (780)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTT-------C-HHH---H-HH----------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-ceEEEEECCC-------C-HHH---H-Hh----------------
Confidence            5789999999999999999999999999999764 9999998763       2 111   1 11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC----CCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP----TTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g----~~~~~~l~~~l~~ll  224 (225)
                           |             +|.++|+++++ ++|+++.++.|    ..+.+++.+.|++++
T Consensus       725 -----~-------------~v~~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l  766 (780)
T 3apo_A          725 -----A-------------GIKAYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKL  766 (780)
T ss_dssp             -----T-------------TCCSSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             -----c-------------CCCcCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHH
Confidence                 2             77788999999 88988766665    467889999998876

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.00  E-value=3.2e-10  Score=85.33  Aligned_cols=50  Identities=14%  Similarity=0.146  Sum_probs=39.8

Q ss_pred             CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           79 GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        79 G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      +....+.+-.+|++|+.||..|||+|....+.+.++.+++++  ++++.+.+
T Consensus        12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~~   61 (175)
T 3gyk_A           12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN--VRLVYREW   61 (175)
T ss_dssp             TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEEC
T ss_pred             CCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC--EEEEEEeC
Confidence            344455566789999999999999999999999999998865  55555443

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.99  E-value=1.7e-09  Score=81.55  Aligned_cols=45  Identities=11%  Similarity=0.122  Sum_probs=38.5

Q ss_pred             CCCEEEEEEcc-------cCCCCChHhHHHHHHHHHHHhc----CCeEEEEEecCC
Q 027311           88 KGKLLLIVNVA-------SQCGLTNSNYTELSQLYDKYKN----QGLEILAFPCNQ  132 (225)
Q Consensus        88 ~gk~vlv~F~~-------twC~~C~~~~~~l~~l~~~~~~----~~~~iv~Is~d~  132 (225)
                      ++.++||+|||       .||++|+...|.++++.++|..    ..+.+..|.+|+
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~   91 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE   91 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT
T ss_pred             CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc
Confidence            46689999999       4999999999999999999971    238899898873

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.98  E-value=4.1e-09  Score=88.69  Aligned_cols=89  Identities=12%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             CCCEEEEEEcccCCCCChHhH------HHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311           88 KGKLLLIVNVASQCGLTNSNY------TELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK  161 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~------~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
                      ++++++|.|||+||++|...-      |.++++.+++++.++.+..|.++.        ..++.    ++          
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~--------~~~l~----~~----------   86 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--------DAAVA----KK----------   86 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--------THHHH----HH----------
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc--------cHHHH----HH----------
Confidence            478999999999999984322      578888888887679999998873        22221    21          


Q ss_pred             ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                 |             +|.++||++++. +|+++ .+.|..+.+.+.+.|.+.+
T Consensus        87 -----------~-------------~V~~~PTl~~f~-~G~~~-~y~G~~~~~~i~~~i~~~~  123 (367)
T 3us3_A           87 -----------L-------------GLTEEDSIYVFK-EDEVI-EYDGEFSADTLVEFLLDVL  123 (367)
T ss_dssp             -----------H-------------TCCSTTEEEEEE-TTEEE-ECCSCCSHHHHHHHHHHHH
T ss_pred             -----------c-------------CCCcCceEEEEE-CCcEE-EeCCCCCHHHHHHHHHHhc
Confidence                       2             788899999984 78875 7888888999999887754

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.96  E-value=9e-10  Score=84.39  Aligned_cols=43  Identities=12%  Similarity=0.123  Sum_probs=39.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .|+++|+.||..|||+|....+.+.++.+++++ ++.+..++++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            589999999999999999999999999999987 4888888876

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.93  E-value=4.5e-10  Score=87.73  Aligned_cols=45  Identities=11%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             ecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        82 ~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      +.+...+||++|+.||++|||+|+...+.++++.++    +++++.+..
T Consensus        79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~v~v~~~~~  123 (216)
T 1eej_A           79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAF  123 (216)
T ss_dssp             EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEEC
T ss_pred             eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----CcEEEEEEC
Confidence            344455789999999999999999999999988652    577776654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.92  E-value=1.4e-09  Score=78.37  Aligned_cols=88  Identities=7%  Similarity=-0.004  Sum_probs=68.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++++|+||++ |++|+...|.++++.++|+++ +.++.|++|+       ..+ +                       
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~-------~~~-~-----------------------   68 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKA-------FGA-H-----------------------   68 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTT-------TGG-G-----------------------
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHH-------hHH-H-----------------------
Confidence            367899999999 899999999999999999876 8999888763       111 0                       


Q ss_pred             CchhhhhhccccCCCCCCCcccc--ceeEEEECC-CCcEEEEcC--CCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKW--NFSKFLVDK-EGNVVERYA--PTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~--~P~~~lid~-~G~I~~~~~--g~~~~~~l~~~l~~ll  224 (225)
                        ...|             ++.+  +|+.++++. +|+. ++..  |..+.+.+++.|++++
T Consensus        69 --a~~~-------------gi~~~~iPtl~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l  114 (133)
T 2djk_A           69 --AGNL-------------NLKTDKFPAFAIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             --TTTT-------------TCCSSSSSEEEEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHH
T ss_pred             --HHHc-------------CCCcccCCEEEEEecCcCcc-cCCCCccccCHHHHHHHHHHHH
Confidence              0112             6666  899999874 5776 5655  8888899999998876

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.90  E-value=5.2e-10  Score=78.35  Aligned_cols=86  Identities=13%  Similarity=0.101  Sum_probs=55.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +++++++ ||++|||+|+...+.|+++..+     +.++.|..+.       ...+....+                   
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~~-------~~~~~~~~l-------------------   65 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS-----YKVVELDELS-------DGSQLQSAL-------------------   65 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGST-------THHHHHHHH-------------------
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCCC-----eEEEEccCCC-------ChHHHHHHH-------------------
Confidence            4566666 9999999999999988887432     4555554432       222222222                   


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC---ChhhHHHHHHhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT---SPLSIEVVLECL  223 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~---~~~~l~~~l~~l  223 (225)
                        ...|             ++.++|++ ++  +|+++..+.|..   +.+++.+.|+++
T Consensus        66 --~~~~-------------~v~~~Pt~-~~--~g~~v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           66 --AHWT-------------GRGTVPNV-FI--GGKQIGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             --HHHH-------------SCCSSCEE-EE--TTEEEECHHHHHHHHHTTCHHHHHHHT
T ss_pred             --HHHh-------------CCCCcCEE-EE--CCEEECChHHHHHHHhCChHHHHHHHc
Confidence              1112             67778998 44  688888766544   556777777653

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.83  E-value=4.6e-09  Score=69.99  Aligned_cols=74  Identities=12%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhh
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPL  172 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  172 (225)
                      |+.||++||++|....+.|+++..++      +..|++|+       +++ +.    ++                     
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~------~~~vdid~-------~~~-l~----~~---------------------   43 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA------FFSVFIDD-------DAA-LE----SA---------------------   43 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC------EEEEECTT-------CHH-HH----HH---------------------
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh------eEEEECCC-------CHH-HH----HH---------------------
Confidence            67899999999998888887765432      45577763       322 21    22                     


Q ss_pred             hhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          173 YKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      |             +++ +|++++  .+|+.+.   |..+.+++++.|++.+
T Consensus        44 ~-------------g~~-vPtl~~--~~G~~v~---g~~~~~~L~~~l~~~~   76 (87)
T 1ttz_A           44 Y-------------GLR-VPVLRD--PMGRELD---WPFDAPRLRAWLDAAP   76 (87)
T ss_dssp             H-------------TTT-CSEEEC--TTCCEEE---SCCCHHHHHHHHHTCC
T ss_pred             h-------------CCC-cCeEEE--ECCEEEe---CCCCHHHHHHHHHHHH
Confidence            2             455 788666  7799875   7778889999988764

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.83  E-value=1.7e-09  Score=82.63  Aligned_cols=43  Identities=12%  Similarity=0.155  Sum_probs=38.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .|+++|+.||..|||+|....+.+.++.+++++ ++.+.-+++.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEEehh
Confidence            589999999999999999999999999999987 4888877764

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.78  E-value=9.9e-09  Score=78.43  Aligned_cols=43  Identities=12%  Similarity=-0.014  Sum_probs=38.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .|+++|+.||..|||+|....+.+.++.++++. ++.+..+++.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~   63 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHVV   63 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC-ceEEEEeccc
Confidence            578999999999999999999999999999876 4888877764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.75  E-value=4e-08  Score=76.65  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=63.5

Q ss_pred             ccCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           86 IYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        86 ~~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      ..+++++++.||++ ||++|+...|.++++.+. . .++.++.|++|        ..+. .+.+ ++             
T Consensus        19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~-~~v~~~~vd~~--------~~~~-~~~~-~~-------------   73 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T-DKLSYEIVDFD--------TPEG-KELA-KR-------------   73 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C-TTEEEEEEETT--------SHHH-HHHH-HH-------------
T ss_pred             hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C-CceEEEEEeCC--------Cccc-HHHH-HH-------------
Confidence            34567888999999 999999999999998864 3 34999988876        3111 2222 22             


Q ss_pred             CCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE-EEcCCCCChhhHHHHHHhhh
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV-ERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~-~~~~g~~~~~~l~~~l~~ll  224 (225)
                              |             ++.++|+++++ ++|... .++.|..+.+++.+.+..++
T Consensus        74 --------~-------------~v~~~Pt~~~~-~~g~~~~~~~~G~~~~~~l~~~l~~~l  112 (226)
T 1a8l_A           74 --------Y-------------RIDRAPATTIT-QDGKDFGVRYFGLPAGHEFAAFLEDIV  112 (226)
T ss_dssp             --------T-------------TCCSSSEEEEE-ETTBCCSEEEESCCCTTHHHHHHHHHH
T ss_pred             --------c-------------CCCcCceEEEE-cCCceeeEEEeccCcHHHHHHHHHHHH
Confidence                    2             77778998888 556432 45666666677777766543

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.67  E-value=8.7e-08  Score=74.93  Aligned_cols=91  Identities=8%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             cCCCEEEEEE----cccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311           87 YKGKLLLIVN----VASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK  161 (225)
Q Consensus        87 ~~gk~vlv~F----~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
                      .++.++|+.|    |++||++|+..+|.+.++++++.+ ..+.+..|..|.        ..++.    ++          
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~~~l~----~~----------   76 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFT--------HKEET----EK----------   76 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTT--------CHHHH----HH----------
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcc--------cHHHH----HH----------
Confidence            3445666666    588999999999999999888843 348888887662        12221    21          


Q ss_pred             ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                 |             +|.++|++++.+ +|....++.|..+.+++.+.+.+++
T Consensus        77 -----------~-------------~v~~~Ptl~~~~-~~~~~~~~~G~~~~~~l~~~~~~~~  114 (229)
T 2ywm_A           77 -----------Y-------------GVDRVPTIVIEG-DKDYGIRYIGLPAGLEFTTLINGIF  114 (229)
T ss_dssp             -----------T-------------TCCBSSEEEEES-SSCCCEEEESCCCTTHHHHHHHHHH
T ss_pred             -----------c-------------CCCcCcEEEEEC-CCcccceecCCccHHHHHHHHHHHH
Confidence                       2             788889988885 5666667778777777777776653

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.66  E-value=3.5e-08  Score=68.17  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      ..|+.||++||++|....+.|+++.++++   +.+.-|++|+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~---i~~~~vDId~   68 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW---FELEVINIDG   68 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC---CCCEEEETTT
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC---CeEEEEECCC
Confidence            56888999999999999999999988863   7777788773

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=98.65  E-value=2e-07  Score=70.87  Aligned_cols=133  Identities=13%  Similarity=0.101  Sum_probs=85.9

Q ss_pred             ccccCCCceecC--e--EEeCCC---------C--CeecCCcc--CCCEEEEEEc-ccCCCCChH-hHHHHHHHHHHH-h
Q 027311           60 TMASQSKTSVHD--F--SVKDAK---------G--QDVDLSIY--KGKLLLIVNV-ASQCGLTNS-NYTELSQLYDKY-K  119 (225)
Q Consensus        60 ~~~~~~g~~~p~--f--~l~~~~---------G--~~~~l~~~--~gk~vlv~F~-~twC~~C~~-~~~~l~~l~~~~-~  119 (225)
                      ++...+|+++|.  +  +....+         |  .++++++.  +||.|||.+. +.+.|.|.. .+|.+.+.++++ +
T Consensus        23 ~~~~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k  102 (199)
T 4h86_A           23 SMSDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVK  102 (199)
T ss_dssp             CBCTTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHH
T ss_pred             hhHHHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHH
Confidence            445578999995  3  333221         2  35667774  7987777654 889999986 699999988875 6


Q ss_pred             cCCe-EEEEEecCCCCCCCCCCHHHHHHHHHhhcCC----CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeE
Q 027311          120 NQGL-EILAFPCNQFGAQEPGDNEQIQEFACTRFKA----EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSK  194 (225)
Q Consensus       120 ~~~~-~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~  194 (225)
                      .+|+ +|+.||+|        +.-.+.+|. +..+.    .++.+  .|..+.. .+.++..... +  .+ +.++.-..
T Consensus       103 ~kGvd~I~ciSVN--------D~FVm~AW~-k~~~~~~~~~i~~l--aD~~~ef-tkalGl~~~~-~--~g-g~RS~Rya  166 (199)
T 4h86_A          103 EKEVDQVIVVTVD--------NPFANQAWA-KSLGVKDTTHIKFA--SDPGCAF-TKSIGFELAV-G--DG-VYWSGRWA  166 (199)
T ss_dssp             HSCCCEEEEEESS--------CHHHHHHHH-HHTTCCCCSSEEEE--ECGGGHH-HHHTTCEEEE-E--TT-EEEECSEE
T ss_pred             hcCCcEEEEEEcC--------CHHHHHHHH-HHhccccccccccc--CCcchHH-HHhcCceeec-C--CC-cceeeEEE
Confidence            7777 79999998        788888887 54444    34555  3444332 2233322111 1  11 34455567


Q ss_pred             EEECCCCcEEEEcCC
Q 027311          195 FLVDKEGNVVERYAP  209 (225)
Q Consensus       195 ~lid~~G~I~~~~~g  209 (225)
                      +||| ||+|.+.+..
T Consensus       167 ~IVd-DGvV~~~~vE  180 (199)
T 4h86_A          167 MVVE-NGIVTYAAKE  180 (199)
T ss_dssp             EEEE-TTEEEEEEEC
T ss_pred             EEEE-CCEEEEEEEe
Confidence            8998 9999988653

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.63  E-value=3.5e-08  Score=78.25  Aligned_cols=135  Identities=8%  Similarity=0.084  Sum_probs=70.9

Q ss_pred             ecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH--------hhcC
Q 027311           82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC--------TRFK  153 (225)
Q Consensus        82 ~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~--------~~~~  153 (225)
                      +.+..-.+|++|+.|+..|||+|+...+.+.++.++   .++++..+.+.-   -.+++.......+.        +.+.
T Consensus        90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p~---~~~~s~~~a~a~~~a~d~~~~~~~~~  163 (241)
T 1v58_A           90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS---GKVQLRTLLVGV---IKPESPATAAAILASKDPAKTWQQYE  163 (241)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT---TSEEEEEEECCC---SSTTHHHHHHHHHHSSSHHHHHHHHH
T ss_pred             ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC---CcEEEEEEECCc---CCCcHHHHHHHHHHccCHHHHHHHHH
Confidence            334444678999999999999999999999887764   247776665431   11222222211110        1111


Q ss_pred             CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          154 AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       154 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ..|.. ...+.........-..+.....-....++.++|++++.|.+|++ .+..|..+++++++.|++.+
T Consensus       164 ~~~~~-~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          164 ASGGK-LKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             HTTTC-CCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC--
T ss_pred             HHhcc-CCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHH
Confidence            11100 00000000000000000000000001289999999999989976 46678888888988887654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.60  E-value=2e-07  Score=81.90  Aligned_cols=82  Identities=10%  Similarity=0.026  Sum_probs=62.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++..++.||++||++|+...|.++++..+++  ++.+..|.+|.       . .++.    ++                
T Consensus       116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~-------~-~~~~----~~----------------  165 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT-------F-QNEI----TE----------------  165 (521)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT-------C-HHHH----HH----------------
T ss_pred             CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechh-------h-HHHH----HH----------------
Confidence            46788999999999999999999999998876  48998888763       2 2221    21                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                           |             ++.++|++++   +|+.+..  |..+.+++.+.|++
T Consensus       166 -----~-------------~i~svPt~~i---~g~~~~~--G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          166 -----R-------------NVMGVPAVFV---NGKEFGQ--GRMTLTEIVAKVDT  197 (521)
T ss_dssp             -----T-------------TCCSSSEEEE---TTEEEEE--SCCCHHHHHHHHCC
T ss_pred             -----h-------------CCCccCEEEE---CCEEEec--CCCCHHHHHHHHhh
Confidence                 2             7778899877   8888765  77777888877654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.55  E-value=9.2e-08  Score=74.24  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      .+|++|+.||..|||+|+...+.++++.+    .++++..+..
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~v~v~~~~~  123 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LGITVRYLAF  123 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CCcEEEEEEC
Confidence            57899999999999999999999988654    2466665543

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.53  E-value=1.3e-07  Score=71.89  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .|+++|+.||..+||+|....+.+.++.++++. ++++..+.+.
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~   66 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPAV   66 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCcc
Confidence            578899999999999999999999999999875 4888777763

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.51  E-value=8.6e-08  Score=62.47  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=27.1

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++.||++|||+|+...+.++++.++++   +.+..+.+|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~~v~   39 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSK---YTVEIVHLG   39 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTT---EEEEEEETT
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcC---CeEEEEEec
Confidence            566899999999999999998876553   444445544

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.50  E-value=8.3e-07  Score=70.47  Aligned_cols=90  Identities=12%  Similarity=0.149  Sum_probs=65.0

Q ss_pred             CCCEEEEEEc--ccCCCCChHhHHHHHHHHHHHhc--CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           88 KGKLLLIVNV--ASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        88 ~gk~vlv~F~--~twC~~C~~~~~~l~~l~~~~~~--~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      .++++||.||  |+||+    ..|.+.++.+++++  .++.|..|++|+++..   ...++.    ++            
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~---~n~~la----~~------------   88 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGEL---ENKALG----DR------------   88 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTC---TTHHHH----HH------------
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCccccc---ccHHHH----HH------------
Confidence            4679999999  99998    78999999999964  4599999988731100   012221    22            


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccc--cceeEEEECCCCcE--EEEc--CCCCChhhHHHHHHhhh
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIK--WNFSKFLVDKEGNV--VERY--APTTSPLSIEVVLECLC  224 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~--~~P~~~lid~~G~I--~~~~--~g~~~~~~l~~~l~~ll  224 (225)
                               |             +|.  ++||++++-  |++  ...+  .|..+.+.+.+.|++.+
T Consensus        89 ---------~-------------~V~~~~~PTl~~F~--G~~~~~~~y~~~G~~~~~~L~~fi~~~~  131 (248)
T 2c0g_A           89 ---------Y-------------KVDDKNFPSIFLFK--GNADEYVQLPSHVDVTLDNLKAFVSANT  131 (248)
T ss_dssp             ---------T-------------TCCTTSCCEEEEES--SSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             ---------h-------------CCCcCCCCeEEEEe--CCcCcceeecccCCCCHHHHHHHHHHhh
Confidence                     2             777  889988885  773  4556  78888888988887653

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.45  E-value=9.6e-07  Score=66.08  Aligned_cols=50  Identities=10%  Similarity=0.157  Sum_probs=39.9

Q ss_pred             ecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecC
Q 027311           82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCN  131 (225)
Q Consensus        82 ~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d  131 (225)
                      +.+.+..++++|+.|+..+||+|....+.+.++.++|.+. +++++.....
T Consensus        20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            3444557899999999999999999999999999998322 3888877654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.45  E-value=2e-07  Score=63.59  Aligned_cols=38  Identities=11%  Similarity=0.116  Sum_probs=29.9

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+++|+.|+++||++|....+.|+++.     +++.+.-|++|
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~   52 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYK-----DRFILQEVDIT   52 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTS-----SSSEEEEEETT
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhh-----hCCeEEEEECC
Confidence            457788899999999998888877653     23788888876

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.45  E-value=9.1e-07  Score=69.96  Aligned_cols=90  Identities=16%  Similarity=0.220  Sum_probs=64.8

Q ss_pred             CCCEEEEEEcc--cCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecC
Q 027311           88 KGKLLLIVNVA--SQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV  164 (225)
Q Consensus        88 ~gk~vlv~F~~--twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  164 (225)
                      .+++++|.||+  +||+    ..|.+.++.+++++ .++.+..|++|+++..   ...++   + ++             
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~---~~~~l---~-~~-------------   76 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDK---LNMEL---S-EK-------------   76 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSC---CSHHH---H-HH-------------
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccch---hhHHH---H-HH-------------
Confidence            46799999999  9998    78999999999974 3589999987631100   11222   1 22             


Q ss_pred             CCCCchhhhhhccccCCCCCCCccc--cceeEEEECCCCc--EEEEcCCCCChhhHHHHHHhh
Q 027311          165 NGDNAAPLYKHLKSSKGGLFGDSIK--WNFSKFLVDKEGN--VVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~v~--~~P~~~lid~~G~--I~~~~~g~~~~~~l~~~l~~l  223 (225)
                              |             +|.  ++|+++++ ++|+  ....+.|..+.+.+.+.|++.
T Consensus        77 --------~-------------~V~~~~~PTl~~f-~~G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           77 --------Y-------------KLDKESYPVFYLF-RDGDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             --------T-------------TCCGGGCSEEEEE-ETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             --------c-------------CCCCCCCCEEEEE-eCCCcCcceeecCCCCHHHHHHHHHHh
Confidence                    2             777  78998888 6676  355788888888888888764

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.40  E-value=5.9e-07  Score=58.81  Aligned_cols=37  Identities=8%  Similarity=0.034  Sum_probs=31.5

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|+++|||+|....+.|+++.++++  ++.+..++++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~   39 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC--CceEEEEecc
Confidence            567999999999999999999988764  4888888765

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.35  E-value=2.7e-07  Score=70.55  Aligned_cols=43  Identities=14%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .++++|+.||..|||+|....+.+.++.++++++ +.+.-+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~-v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD-MYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT-EEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC-eEEEEecCC
Confidence            4789999999999999999999999999999874 888888876

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.12  E-value=6.7e-06  Score=65.03  Aligned_cols=43  Identities=9%  Similarity=0.150  Sum_probs=34.7

Q ss_pred             CCEEEEEEcccC--CCCChHhHHHHHHHHHHHhc-CC---eEEEEEecC
Q 027311           89 GKLLLIVNVASQ--CGLTNSNYTELSQLYDKYKN-QG---LEILAFPCN  131 (225)
Q Consensus        89 gk~vlv~F~~tw--C~~C~~~~~~l~~l~~~~~~-~~---~~iv~Is~d  131 (225)
                      +++++|.||+.|  |++|....+.+.++.+++.. +|   +.++.++.|
T Consensus        25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d   73 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRE   73 (243)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETT
T ss_pred             CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCC
Confidence            468999999999  99999999999999988532 22   777777765

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.12  E-value=1e-05  Score=67.45  Aligned_cols=90  Identities=9%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             CEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCc
Q 027311           90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNA  169 (225)
Q Consensus        90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  169 (225)
                      ++++|.|++.||+.|....+.++++.++++++ +.++.|..|.         ++..+.+ +.+                 
T Consensus       136 ~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~---------~~~~~~~-~~f-----------------  187 (361)
T 3uem_A          136 KTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDH---------TDNQRIL-EFF-----------------  187 (361)
T ss_dssp             CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTS---------GGGHHHH-HHT-----------------
T ss_pred             CcEEEEEEeCCchhHHHHHHHHHHHHHHccCc-eEEEEecCCh---------HHHHHHH-HHc-----------------
Confidence            47788999999999999999999999999876 8888887651         0111122 221                 


Q ss_pred             hhhhhhccccCCCCCCCcccc--ceeEEEECCCCcE-EEEc-CCCCChhhHHHHHHhhh
Q 027311          170 APLYKHLKSSKGGLFGDSIKW--NFSKFLVDKEGNV-VERY-APTTSPLSIEVVLECLC  224 (225)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~v~~--~P~~~lid~~G~I-~~~~-~g~~~~~~l~~~l~~ll  224 (225)
                                       ++..  +|+..+++..+.. .+.. .+..+.+.+.+.++..+
T Consensus       188 -----------------gi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l  229 (361)
T 3uem_A          188 -----------------GLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFL  229 (361)
T ss_dssp             -----------------TCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHH
T ss_pred             -----------------CCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHh
Confidence                             4444  6888888774432 2222 26678888998888765

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.06  E-value=1.3e-06  Score=70.78  Aligned_cols=38  Identities=13%  Similarity=0.067  Sum_probs=28.9

Q ss_pred             eecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHH
Q 027311           81 DVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY  118 (225)
Q Consensus        81 ~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~  118 (225)
                      ...+.+.-++..++.||++|||+|+...|.++++.+++
T Consensus       189 ~~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l  226 (291)
T 3kp9_A          189 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV  226 (291)
T ss_dssp             HHHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS
T ss_pred             HHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc
Confidence            34455543445578999999999999999999987554

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.04  E-value=2.7e-06  Score=55.10  Aligned_cols=32  Identities=6%  Similarity=0.293  Sum_probs=24.7

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++.|+++|||+|+...+.|++       .++.+..+++|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~   34 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMEN-------RGFDFEMINVD   34 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETT
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CCCCeEEEECC
Confidence            566999999999988777765       24666777776

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.96  E-value=3.5e-06  Score=64.05  Aligned_cols=43  Identities=5%  Similarity=0.073  Sum_probs=36.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .++++||.||..|||+|....+.+   .++.+++.+ +++++.+.++
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~   58 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVS   58 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECS
T ss_pred             CCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEech
Confidence            467899999999999999999986   678877775 4888888876

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.90  E-value=1.8e-05  Score=50.16  Aligned_cols=32  Identities=13%  Similarity=0.211  Sum_probs=24.3

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++.|+++||++|+...+.|+++       ++.+..+.+|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~di~   34 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-------GLAYNTVDIS   34 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETT
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCCcEEEECC
Confidence            4568999999999888877653       4666667766

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.85  E-value=2.8e-05  Score=56.67  Aligned_cols=36  Identities=19%  Similarity=0.377  Sum_probs=28.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP  129 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is  129 (225)
                      .|+++|+.|...+||+|++..+.++++    +  +++++.+.
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~--~v~v~~~~   48 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM----T--DVTVYSFM   48 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC----C--SEEEEEEE
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc----C--ceEEEEEE
Confidence            578999999999999999998888654    3  26665553

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.83  E-value=2.4e-05  Score=59.21  Aligned_cols=40  Identities=18%  Similarity=0.159  Sum_probs=34.7

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++++||.|+.-|||+|....|.+.++.+++   ++.+.-+.++
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA---GTDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH---TSCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh---CCeEEEEecc
Confidence            689999999999999999999999999998   3666666664

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.79  E-value=2.8e-05  Score=58.79  Aligned_cols=43  Identities=14%  Similarity=0.195  Sum_probs=36.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH-HHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL-SQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l-~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+++++|.||..+||+|....+.+ .++.+++..+ +++..+.++
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~-v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDI-VAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTT-CEEEEEECT
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCc-eEEEEEecC
Confidence            467788899999999999999999 9999988754 787777765

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.79  E-value=4.3e-05  Score=57.10  Aligned_cols=43  Identities=9%  Similarity=0.019  Sum_probs=35.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .++++||.|+.-.||+|...-+.+.++.+++.+. +.++-+...
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~~~   62 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNHVS   62 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEECS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCc-eEEEEEecC
Confidence            4788999999999999999999999999998765 666655543

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.76  E-value=1e-05  Score=55.16  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=20.2

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKY  118 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~  118 (225)
                      ++.|+++|||+|+...+.|.++..++
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~   39 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKE   39 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCC
Confidence            55599999999998888887654443

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.71  E-value=4.1e-06  Score=64.20  Aligned_cols=44  Identities=11%  Similarity=0.098  Sum_probs=39.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      .++++||.||+.|||+|....|.+   .++.++++++ +.+.-+.++.
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~-v~~~~~~v~~  158 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG-VKMTKYHVNF  158 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT-CCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC-CEEEEeccCc
Confidence            478999999999999999999998   9999998754 8999998873

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.59  E-value=0.00087  Score=44.59  Aligned_cols=78  Identities=12%  Similarity=0.098  Sum_probs=47.4

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhh
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPL  172 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  172 (225)
                      |+.|..+|||.|.+.-..|++       +|+.+.-+.+|.       +.+..++.. +..                    
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~-------~gi~y~~idi~~-------d~~~~~~~~-~~~--------------------   50 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA-------NRIAYDEVDIEH-------NRAAAEFVG-SVN--------------------   50 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH-------TTCCCEEEETTT-------CHHHHHHHH-HHS--------------------
T ss_pred             EEEEcCCCCHhHHHHHHHHHh-------cCCceEEEEcCC-------CHHHHHHHH-HHc--------------------
Confidence            455889999999965555443       456666777763       344333322 210                    


Q ss_pred             hhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          173 YKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                   .|.+.+|++++  .||.+..    ..+.+++++.|+++.
T Consensus        51 -------------~G~~tVP~I~i--~Dg~~l~----~~~~~el~~~L~el~   83 (92)
T 2lqo_A           51 -------------GGNRTVPTVKF--ADGSTLT----NPSADEVKAKLVKIA   83 (92)
T ss_dssp             -------------SSSSCSCEEEE--TTSCEEE----SCCHHHHHHHHHHHH
T ss_pred             -------------CCCCEeCEEEE--eCCEEEe----CCCHHHHHHHHHHhc
Confidence                         04455688655  4577642    246788999888874

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.55  E-value=0.0006  Score=51.18  Aligned_cols=110  Identities=14%  Similarity=0.058  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .-.+|+++|++.++||+.|......+   .++.+-+.+ ++.+.+.+++        +.+....+. ...+         
T Consensus        52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~-nfV~w~~dv~--------~~e~~~~~~-~~~~---------  112 (178)
T 2ec4_A           52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ-NFITWAWDLT--------KDSNRARFL-TMCN---------  112 (178)
T ss_dssp             TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH-TEEEEEEECC--------SHHHHHHHH-HHHH---------
T ss_pred             hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc-CEEEEEEeCC--------Cchhhhhhh-hhhh---------
Confidence            44689999999999999988655332   234444443 5888888876        333322222 1000         


Q ss_pred             cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCC---cEEEEcCCCCChhhHHHHHHhhh
Q 027311          163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEG---NVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G---~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      +..+.......+.+          ++.++|+..+|+++|   +++.+..|..+++++.+.|...+
T Consensus       113 ~~~g~~~a~~~~~~----------~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A          113 RHFGSVVAQTIRTQ----------KTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             HHTCHHHHHHHHHS----------CSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhhc----------CCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            00011111110001          677889999998774   78999999999999888887653

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=0.00011  Score=52.14  Aligned_cols=33  Identities=6%  Similarity=0.134  Sum_probs=23.0

Q ss_pred             EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+++ |+++|||+|+...+.|.++.       +.+..+.+|
T Consensus        28 ~vvv-f~~~~Cp~C~~~~~~L~~~~-------i~~~~vdid   60 (130)
T 2cq9_A           28 CVVI-FSKTSCSYCTMAKKLFHDMN-------VNYKVVELD   60 (130)
T ss_dssp             SEEE-EECSSCSHHHHHHHHHHHHT-------CCCEEEETT
T ss_pred             cEEE-EEcCCChHHHHHHHHHHHcC-------CCcEEEECc
Confidence            3444 99999999998888777652       344455665

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.49  E-value=2.2e-05  Score=54.50  Aligned_cols=33  Identities=9%  Similarity=0.170  Sum_probs=23.3

Q ss_pred             EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeE---EEEEecC
Q 027311           92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLE---ILAFPCN  131 (225)
Q Consensus        92 vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~---iv~Is~d  131 (225)
                      .|+.|+++|||+|+...+.|.++       ++.   +..|.+|
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~-------~~~~~~~~~vdi~   55 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKF-------SFKRGAYEIVDIK   55 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTS-------CBCTTSEEEEEGG
T ss_pred             CEEEEEeCCChhHHHHHHHHHHc-------CCCcCceEEEEcc
Confidence            45669999999999777766543       344   5566665

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.46  E-value=0.00018  Score=54.59  Aligned_cols=43  Identities=9%  Similarity=0.094  Sum_probs=36.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .++++|+.|+.-+||+|...-+.+   .++.+++.++ ++++-+.++
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~-v~~~~~~~~   65 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEG-TKMTKYHVE   65 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTT-CCEEEEECS
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCC-cEEEEEecc
Confidence            468999999999999999999987   6899999764 777777765

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.38  E-value=0.00019  Score=52.10  Aligned_cols=23  Identities=9%  Similarity=0.208  Sum_probs=18.2

Q ss_pred             EEEEEEcccCCCCChHhHHHHHHH
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQL  114 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~l  114 (225)
                      .++| |+++|||+|+...+.|.++
T Consensus        50 ~Vvv-f~~~~Cp~C~~~k~~L~~~   72 (146)
T 2ht9_A           50 CVVI-FSKTSCSYCTMAKKLFHDM   72 (146)
T ss_dssp             SEEE-EECTTCHHHHHHHHHHHHH
T ss_pred             CEEE-EECCCChhHHHHHHHHHHc
Confidence            3444 9999999999888877765

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.37  E-value=0.0003  Score=47.68  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=18.3

Q ss_pred             EEEEEcccCCCCChHhHHHHHHH
Q 027311           92 LLIVNVASQCGLTNSNYTELSQL  114 (225)
Q Consensus        92 vlv~F~~twC~~C~~~~~~l~~l  114 (225)
                      .++.|+++|||+|+...+.|+++
T Consensus        23 ~v~ly~~~~Cp~C~~ak~~L~~~   45 (103)
T 3nzn_A           23 KVIMYGLSTCVWCKKTKKLLTDL   45 (103)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCchHHHHHHHHHHc
Confidence            35559999999999888777764

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.06  E-value=0.00058  Score=53.27  Aligned_cols=45  Identities=13%  Similarity=0.147  Sum_probs=34.9

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHH-HHHHHHHhcC-CeEEEEEecC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTEL-SQLYDKYKNQ-GLEILAFPCN  131 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l-~~l~~~~~~~-~~~iv~Is~d  131 (225)
                      -.++++|+.|+.-.||.|...-+.+ .++.++|.+. +++++.....
T Consensus        37 ~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p   83 (226)
T 3f4s_A           37 PKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFP   83 (226)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCC
Confidence            3578999999999999999988864 7888888543 3777766653

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.97  E-value=0.002  Score=41.15  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++.|+++|||.|....+.|++.       ++.+..+.+|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~~i~   34 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-------GVSFQELPID   34 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEECT
T ss_pred             EEEEECCCChhHHHHHHHHHHC-------CCCcEEEECC
Confidence            4558899999999877777653       3555556655

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=96.94  E-value=0.00096  Score=46.43  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=22.4

Q ss_pred             EEEEcccCCCCChHh-HHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           93 LIVNVASQCGLTNSN-YTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        93 lv~F~~twC~~C~~~-~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      |+.|+++|||+|... .+.|.+    .+...+.+..+.+|.
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~----~~~~~i~~~~vdid~   63 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEK----LKVPRSKVLVLQLND   63 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTT----SCCCGGGEEEEEGGG
T ss_pred             EEEEEcCCCcCHHHHHHHHHHH----cCCCCCCeEEEECcc
Confidence            445999999999976 444433    221116666677663

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=96.92  E-value=0.0023  Score=42.01  Aligned_cols=22  Identities=14%  Similarity=0.152  Sum_probs=17.2

Q ss_pred             EEEEcccCCCCChHhHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQL  114 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l  114 (225)
                      ++.|+++|||.|+.....|.++
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~   35 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKRE   35 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc
Confidence            4458899999999877777654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=96.85  E-value=0.01  Score=45.86  Aligned_cols=92  Identities=5%  Similarity=0.027  Sum_probs=61.1

Q ss_pred             EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCch
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAA  170 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  170 (225)
                      .+++.|...||+.|....+.++++.++++++ +.++.+..|.         +.....+ +.+++.               
T Consensus       133 ~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~---------~~~~~~l-~~fgl~---------------  186 (227)
T 4f9z_D          133 IHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGM---------KENGKVI-SFFKLK---------------  186 (227)
T ss_dssp             EEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTS---------GGGHHHH-HHTTCC---------------
T ss_pred             eEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCcc---------HhHHHHH-HHcCCC---------------
Confidence            4445565779999999999999999999877 8888777541         1111222 222221               


Q ss_pred             hhhhhccccCCCCCCCccccceeEEEECCCCcEEEEc-CCCCChhhHHHHHHhhhC
Q 027311          171 PLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERY-APTTSPLSIEVVLECLCC  225 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~-~g~~~~~~l~~~l~~ll~  225 (225)
                                       -...|+..+++..+...+.. .+..+.+.|++.++.+++
T Consensus       187 -----------------~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          187 -----------------ESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             -----------------GGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             -----------------cccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence                             11458888888666544444 367788999999988764

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=96.81  E-value=0.002  Score=41.82  Aligned_cols=21  Identities=5%  Similarity=0.031  Sum_probs=16.1

Q ss_pred             EEEEcccCCCCChHhHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQ  113 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~  113 (225)
                      ++.|+.+|||.|+.....|++
T Consensus         6 v~ly~~~~Cp~C~~~~~~L~~   26 (89)
T 3msz_A            6 VKIYTRNGCPYCVWAKQWFEE   26 (89)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHH
Confidence            566889999999976665544

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.77  E-value=0.0022  Score=44.00  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=17.2

Q ss_pred             EEEEcccCCCCChHhHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQL  114 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l  114 (225)
                      |+.|+.+|||+|....+.|.++
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~   42 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL   42 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT
T ss_pred             EEEEECCCChhHHHHHHHHHHc
Confidence            4559999999999777777653

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=96.75  E-value=0.0037  Score=42.29  Aligned_cols=33  Identities=18%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             EEEEEEcc-----cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           91 LLLIVNVA-----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        91 ~vlv~F~~-----twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .++| |+.     +|||+|....+.|.++       ++.+..+.+|
T Consensus        18 ~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~   55 (105)
T 2yan_A           18 SVML-FMKGNKQEAKCGFSKQILEILNST-------GVEYETFDIL   55 (105)
T ss_dssp             SEEE-EESBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGG
T ss_pred             CEEE-EEecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECC
Confidence            4555 555     9999999877777654       3556666666

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=96.12  E-value=0.0095  Score=39.91  Aligned_cols=34  Identities=15%  Similarity=0.214  Sum_probs=24.2

Q ss_pred             EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .-|+.|+.+|||.|......|++.       ++.+..+.+|
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~-------~i~y~~idI~   49 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRK-------GVEFQEYCID   49 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHH-------TCCCEEEECT
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHC-------CCCCEEEEcC
Confidence            344559999999999888777764       3455556666

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=96.11  E-value=0.014  Score=40.07  Aligned_cols=19  Identities=21%  Similarity=0.125  Sum_probs=15.3

Q ss_pred             EcccCCCCChHhHHHHHHH
Q 027311           96 NVASQCGLTNSNYTELSQL  114 (225)
Q Consensus        96 F~~twC~~C~~~~~~l~~l  114 (225)
                      |+.+|||.|......|+++
T Consensus        22 y~~~~Cp~C~~ak~~L~~~   40 (114)
T 3h8q_A           22 FSKSYCPHSTRVKELFSSL   40 (114)
T ss_dssp             EECTTCHHHHHHHHHHHHT
T ss_pred             EEcCCCCcHHHHHHHHHHc
Confidence            8899999999777666653

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=95.82  E-value=0.012  Score=38.35  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=22.9

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++.|+.+|||.|+...+.|++.       ++.+..+.++
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~~-------~i~~~~~di~   39 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLARK-------GAEFNEIDAS   39 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEEST
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECC
Confidence            5568899999999777666543       4556666665

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=95.82  E-value=0.12  Score=39.13  Aligned_cols=37  Identities=5%  Similarity=-0.158  Sum_probs=30.3

Q ss_pred             ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ++.++|+. +|+.+|+.+....|..+.+++.+.|++++
T Consensus       166 gv~g~Pt~-~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          166 GVNSYPSL-VLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             TCCSSSEE-EEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             CCCcccEE-EEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            89999995 55667887777788888899999998876

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=95.50  E-value=0.046  Score=37.04  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             EEEEEEcc----cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           91 LLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        91 ~vlv~F~~----twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      .++|+..+    +|||.|......|+++       ++.+..+.++.
T Consensus        16 ~vvvy~~g~~~~~~Cp~C~~ak~~L~~~-------~i~~~~vdi~~   54 (109)
T 1wik_A           16 SVMLFMKGNKQEAKCGFSKQILEILNST-------GVEYETFDILE   54 (109)
T ss_dssp             SEEEEESSTTTCCCSSTHHHHHHHHHHT-------CSCEEEEESSS
T ss_pred             CEEEEEecCCCCCCCchHHHHHHHHHHc-------CCCeEEEECCC
Confidence            45554443    8999999777666543       46677777763

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=95.31  E-value=0.014  Score=41.15  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=15.3

Q ss_pred             EEEEcccCCCCChHh-HHHHHH
Q 027311           93 LIVNVASQCGLTNSN-YTELSQ  113 (225)
Q Consensus        93 lv~F~~twC~~C~~~-~~~l~~  113 (225)
                      |+.|+.+|||.|... .+.|.+
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~   60 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQE   60 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCchHHHHHHHHHh
Confidence            456899999999977 444443

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=95.06  E-value=0.018  Score=37.35  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=17.7

Q ss_pred             EEEEcccCCCCChHhHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQL  114 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l  114 (225)
                      ++.|+++|||.|+...+.|++.
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~   29 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK   29 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHc
Confidence            5568999999999877777653

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=94.18  E-value=0.52  Score=32.69  Aligned_cols=35  Identities=9%  Similarity=-0.054  Sum_probs=26.9

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEE
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF  128 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~I  128 (225)
                      .+++||-||.+||..|   .+.+.+..+.+ +. +.+...
T Consensus        39 ~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d-~~F~~t   73 (124)
T 2l4c_A           39 TEVAVIGFFQDLEIPA---VPILHSMVQKF-PG-VSFGIS   73 (124)
T ss_dssp             SSEEEEEECSCTTSTH---HHHHHHHHHHC-TT-SEEEEE
T ss_pred             CCCEEEEEECCCCChh---HHHHHHHHHhC-CC-ceEEEE
Confidence            5799999999999998   56777888887 33 766544

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=94.11  E-value=0.72  Score=36.61  Aligned_cols=39  Identities=10%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             EEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      ..|..|...+||.|...-..|.++..++   ++..+.+.++.
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~---~vi~l~~~v~~   82 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKG---DVVGLSYHVDY   82 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHT---SSEEEEEECST
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccC---CeeeEEEEEEE
Confidence            5666688999999999988888887653   46566676653

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=93.98  E-value=0.31  Score=37.66  Aligned_cols=37  Identities=19%  Similarity=0.050  Sum_probs=31.2

Q ss_pred             ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      +|+.+|+.++++++|++..........+.+...|++|
T Consensus       202 ~v~~~Pslvl~~~~g~~~~~~~~~~~r~~~~~~l~~~  238 (244)
T 3q6o_A          202 GVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRL  238 (244)
T ss_dssp             TCCCSSEEEEEETTSCEEECCCSSSSHHHHHHHHHTC
T ss_pred             CCCCCCeEEEEeCCCCeEeeccccccHHHHHHHHHhC
Confidence            8999999999999999988877666667777777765

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=93.03  E-value=0.86  Score=34.25  Aligned_cols=37  Identities=5%  Similarity=-0.147  Sum_probs=29.9

Q ss_pred             ccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          187 SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       187 ~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ++.++|++++. .+|+.+....|..+.+.+.+.|++++
T Consensus       173 gv~g~Pt~~i~-~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          173 GISGFPALVVE-SGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             TCCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             CCcccceEEEE-ECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            89999997765 46876656788888899999988875

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=92.97  E-value=0.65  Score=37.99  Aligned_cols=42  Identities=10%  Similarity=-0.005  Sum_probs=31.8

Q ss_pred             CEEEEEEcccCCCCChHhHHHHHHHHHHHhc-CCeEEEEEecC
Q 027311           90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKN-QGLEILAFPCN  131 (225)
Q Consensus        90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~-~~~~iv~Is~d  131 (225)
                      +..++.|...||+.|....+.++++.+++++ ..+.++.+..+
T Consensus       246 ~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~  288 (350)
T 1sji_A          246 GIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPD  288 (350)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGG
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECch
Confidence            3344558888998899999999999999984 34777777644

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.81  E-value=0.41  Score=32.41  Aligned_cols=36  Identities=14%  Similarity=0.249  Sum_probs=20.8

Q ss_pred             EEEEcccCCCCChH--hHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNS--NYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~--~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|..++||.|..  .-....++.+   ..++.+..+.++
T Consensus        10 V~vy~~~~C~~C~~~~~~~~ak~~L~---~~gi~y~~vdI~   47 (111)
T 2ct6_A           10 IRVFIASSSGFVAIKKKQQDVVRFLE---ANKIEFEEVDIT   47 (111)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHH---HTTCCEEEEETT
T ss_pred             EEEEEcCCCCCcccchhHHHHHHHHH---HcCCCEEEEECC
Confidence            44577899999992  1112222332   345667677776

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=92.56  E-value=0.062  Score=42.83  Aligned_cols=40  Identities=10%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      .|+.+|+.|+-..||+|++..+.+++..+.   -.++++.+.+
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~---~~Vr~i~~Pi  185 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE---NTVRMVVVGW  185 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH---CEEEEEECCC
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC---CcEEEEEeec
Confidence            478999999999999999999999976654   3377776654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=91.81  E-value=0.75  Score=38.02  Aligned_cols=42  Identities=7%  Similarity=-0.001  Sum_probs=33.2

Q ss_pred             CEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecC
Q 027311           90 KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCN  131 (225)
Q Consensus        90 k~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d  131 (225)
                      ++.++.|...+|+.|...+..++++.++++++ .+.++.|..+
T Consensus       248 ~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~  290 (367)
T 3us3_A          248 GIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPD  290 (367)
T ss_dssp             TEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGG
T ss_pred             CcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCc
Confidence            35566688888888888999999999999875 3888877655

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=91.76  E-value=0.19  Score=38.03  Aligned_cols=44  Identities=2%  Similarity=0.107  Sum_probs=34.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH-HHHHHHHhcC-CeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL-SQLYDKYKNQ-GLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l-~~l~~~~~~~-~~~iv~Is~d  131 (225)
                      .++++|+.|+.-.||.|....+.+ ..+.++|.+. +++++-..+.
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p   73 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM   73 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecC
Confidence            578999999999999999888876 5677778643 3888877654

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=91.72  E-value=0.48  Score=30.26  Aligned_cols=32  Identities=13%  Similarity=0.069  Sum_probs=20.6

Q ss_pred             EEEEccc----CCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVAS----QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~t----wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|+.+    |||.|......|++       .|+.+-.+.++
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~-------~gi~y~~idI~   37 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTV-------KKQPFEFINIM   37 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHH-------TTCCEEEEESC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHH-------cCCCEEEEEee
Confidence            3457789    99999966655544       33555555555

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=91.68  E-value=0.58  Score=30.31  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=19.2

Q ss_pred             EEEEcccCCCCCh--HhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTN--SNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~--~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|..++||.|.  ..-....++.+   +.|+.+..+.++
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~---~~~i~~~~~di~   41 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILD---GKRIQYQLVDIS   41 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHH---HTTCCCEEEETT
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHH---HCCCceEEEECC
Confidence            3447789999993  11112222222   345666666665

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=91.25  E-value=0.4  Score=33.46  Aligned_cols=47  Identities=19%  Similarity=0.364  Sum_probs=27.3

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      |+.|..+|||.|......|++.. .+ ...+.++-|..+.       +.+++++++
T Consensus        16 Vvvysk~~Cp~C~~ak~lL~~~~-~~-~v~~~~idid~~~-------d~~~~~~~l   62 (127)
T 3l4n_A           16 IIIFSKSTCSYSKGMKELLENEY-QF-IPNYYIIELDKHG-------HGEELQEYI   62 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHE-EE-ESCCEEEEGGGST-------THHHHHHHH
T ss_pred             EEEEEcCCCccHHHHHHHHHHhc-cc-CCCcEEEEecCCC-------CHHHHHHHH
Confidence            44578899999997766666531 01 1125555554432       445666665

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=91.21  E-value=0.15  Score=38.04  Aligned_cols=43  Identities=14%  Similarity=0.224  Sum_probs=33.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      .++++|+.|..-.||+|.+..+.+.++.+++....++++.-..
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence            4778899999999999999999998887776222388776654

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=90.99  E-value=0.23  Score=36.67  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=33.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHH-HHHHHHHhcC-CeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTEL-SQLYDKYKNQ-GLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l-~~l~~~~~~~-~~~iv~Is~d  131 (225)
                      .++++|+.|+...||.|....+.+ .++.++|.+. +++++-..+.
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p   55 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLA   55 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecC
Confidence            467888889999999999999998 5687888653 3777766543

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=90.67  E-value=0.24  Score=35.08  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=22.1

Q ss_pred             EEEEEEcc----cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           91 LLLIVNVA----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        91 ~vlv~F~~----twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      .|+|+.++    +|||.|......|+++       |+.+..+.++
T Consensus        36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-------gv~y~~vdI~   73 (135)
T 2wci_A           36 PILLYMKGSPKLPSCGFSAQAVQALAAC-------GERFAYVDIL   73 (135)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHTT-------CSCCEEEEGG
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHc-------CCceEEEECC
Confidence            45565555    7999999766666442       4556666665

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=88.73  E-value=0.91  Score=31.72  Aligned_cols=53  Identities=9%  Similarity=0.115  Sum_probs=34.5

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP  157 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (225)
                      +..|..++|+.|......|++       .|+.+-.+.++.    .+.+.+++.+++ +..+.++.
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~-------~gi~y~~~di~~----~~~~~~el~~~l-~~~~~~~~   55 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEE-------HEIPFVERNIFS----EPLSIDEIKQIL-RMTEDGTD   55 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCEEEEETTT----SCCCHHHHHHHH-HTCSSCGG
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCceEEEEccC----CCccHHHHHHHH-HHcCCCHH
Confidence            345678999999977766664       345555566552    344678888887 55455443

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=88.37  E-value=0.65  Score=31.44  Aligned_cols=35  Identities=11%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             CCEEEEEEcc-----cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           89 GKLLLIVNVA-----SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        89 gk~vlv~F~~-----twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ..+|+| |..     +|||.|......|++.       |+.+..+.++
T Consensus        15 ~~~Vvl-f~kg~~~~~~Cp~C~~ak~~L~~~-------gi~y~~~di~   54 (111)
T 3zyw_A           15 AAPCML-FMKGTPQEPRCGFSKQMVEILHKH-------NIQFSSFDIF   54 (111)
T ss_dssp             SSSEEE-EESBCSSSBSSHHHHHHHHHHHHT-------TCCCEEEEGG
T ss_pred             cCCEEE-EEecCCCCCcchhHHHHHHHHHHc-------CCCeEEEECc
Confidence            345555 555     8999999776666542       3444555555

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=87.53  E-value=5.6  Score=30.66  Aligned_cols=33  Identities=12%  Similarity=-0.092  Sum_probs=23.8

Q ss_pred             ceeEEEECCCCcEEEEcCCCCChhh--HHHHHHhhh
Q 027311          191 NFSKFLVDKEGNVVERYAPTTSPLS--IEVVLECLC  224 (225)
Q Consensus       191 ~P~~~lid~~G~I~~~~~g~~~~~~--l~~~l~~ll  224 (225)
                      .|...|+|.+|. .+...+..+.+.  |.+.++.++
T Consensus       195 ~P~v~i~~~~~~-ky~~~~~~t~~~~~i~~F~~~~~  229 (252)
T 2h8l_A          195 IPVVAIRTAKGE-KFVMQEEFSRDGKALERFLQDYF  229 (252)
T ss_dssp             SCEEEEECTTSC-EEECCSCCCTTSHHHHHHHHHHH
T ss_pred             CCEEEEEeCcCc-EecCCcccCcchHHHHHHHHHHH
Confidence            588888887665 455556666677  888888765

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=87.10  E-value=2  Score=29.43  Aligned_cols=25  Identities=12%  Similarity=0.331  Sum_probs=16.0

Q ss_pred             CEEEEEEcc----cCCCCChHhHHHHHHH
Q 027311           90 KLLLIVNVA----SQCGLTNSNYTELSQL  114 (225)
Q Consensus        90 k~vlv~F~~----twC~~C~~~~~~l~~l  114 (225)
                      ..|+|+--.    +|||.|......|++.
T Consensus        16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~   44 (121)
T 3gx8_A           16 APVVLFMKGTPEFPKCGFSRATIGLLGNQ   44 (121)
T ss_dssp             CSEEEEESBCSSSBCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEeccCCCCCCccHHHHHHHHHHc
Confidence            345553333    3999999776666654

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=86.95  E-value=1.3  Score=33.50  Aligned_cols=45  Identities=16%  Similarity=-0.044  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHH-HHhcC-CeEEEEEec
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYD-KYKNQ-GLEILAFPC  130 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~-~~~~~-~~~iv~Is~  130 (225)
                      +-.++++|+.|..--||.|....+.+....+ +|-+. .++++....
T Consensus        12 ~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~   58 (205)
T 3gmf_A           12 NPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNF   58 (205)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEC
T ss_pred             CCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeC
Confidence            3457899999999999999998888765544 77322 388776664

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=85.55  E-value=1.6  Score=29.93  Aligned_cols=52  Identities=6%  Similarity=0.082  Sum_probs=34.4

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP  157 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (225)
                      ..|..++|+.|+.....|++       .|+.+-.+.++    ..+.+.+++.+++ +..+.++.
T Consensus         3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~~di~----~~~~~~~el~~~l-~~~~~~~~   54 (120)
T 3l78_A            3 TLFLSPSCTSCRKARAWLNR-------HDVVFQEHNIM----TSPLSRDELLKIL-SYTENGTE   54 (120)
T ss_dssp             EEEECSSCHHHHHHHHHHHH-------TTCCEEEEETT----TSCCCHHHHHHHH-HHCSSTHH
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecc----cCCCcHHHHHHHH-hhcCCCHH
Confidence            34668899999977766653       34555556654    2345889999998 55455543

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=84.80  E-value=1.1  Score=30.10  Aligned_cols=25  Identities=20%  Similarity=0.313  Sum_probs=16.1

Q ss_pred             CCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311          100 QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus       100 wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |||.|.+....|++.       |+.+-.+.++
T Consensus        32 ~Cp~C~~ak~~L~~~-------gi~~~~~dI~   56 (109)
T 3ipz_A           32 MCGFSNTVVQILKNL-------NVPFEDVNIL   56 (109)
T ss_dssp             SSHHHHHHHHHHHHT-------TCCCEEEEGG
T ss_pred             CChhHHHHHHHHHHc-------CCCcEEEECC
Confidence            999999766666553       3444455554

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=83.69  E-value=2.1  Score=32.77  Aligned_cols=23  Identities=9%  Similarity=0.086  Sum_probs=16.6

Q ss_pred             EEEEEEcccCCCCChHhHHHHHH
Q 027311           91 LLLIVNVASQCGLTNSNYTELSQ  113 (225)
Q Consensus        91 ~vlv~F~~twC~~C~~~~~~l~~  113 (225)
                      ..++.|..+|||.|.+....|++
T Consensus       170 ~~i~ly~~~~Cp~C~~a~~~L~~  192 (241)
T 1nm3_A          170 ESISIFTKPGCPFCAKAKQLLHD  192 (241)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCChHHHHHHHHHHH
Confidence            34555778999999977666654

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=82.43  E-value=0.76  Score=31.22  Aligned_cols=48  Identities=10%  Similarity=0.119  Sum_probs=30.3

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK  153 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~  153 (225)
                      ..|..++|+.|++....|++       .|+.+-.+.++.    .+.+.+++++++ ++.|
T Consensus         3 ~iY~~~~C~~C~kak~~L~~-------~gi~~~~~di~~----~~~~~~~l~~~~-~~~g   50 (114)
T 1rw1_A            3 VLYGIKACDTMKKARTWLDE-------HKVAYDFHDYKA----VGIDREHLRRWC-AEHG   50 (114)
T ss_dssp             EEEECSSCHHHHHHHHHHHH-------TTCCEEEEEHHH----HCCCHHHHHHHH-HHHC
T ss_pred             EEEECCCChHHHHHHHHHHH-------CCCceEEEeecC----CCCCHHHHHHHH-HhCC
Confidence            34668899999977766654       345554455431    223668888887 4444

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=81.61  E-value=2.3  Score=29.11  Aligned_cols=52  Identities=13%  Similarity=0.176  Sum_probs=34.5

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP  157 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (225)
                      ..|..++|+.|++....|++       +|+.+-.+.+.    ..+.+.+++.+++ ++.+.++.
T Consensus         6 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~~di~----~~~~~~~eL~~~l-~~~g~~~~   57 (120)
T 3fz4_A            6 TFYEYPKCSTCRRAKAELDD-------LAWDYDAIDIK----KNPPAASLIRNWL-ENSGLELK   57 (120)
T ss_dssp             EEEECSSCHHHHHHHHHHHH-------HTCCEEEEETT----TSCCCHHHHHHHH-HHSCCCGG
T ss_pred             EEEeCCCChHHHHHHHHHHH-------cCCceEEEEec----cCchhHHHHHHHH-HHcCCCHH
Confidence            34568899999987766653       23444445543    2345889999998 66666544

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=80.93  E-value=7.6  Score=26.68  Aligned_cols=38  Identities=13%  Similarity=0.072  Sum_probs=21.5

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|..+.||.|.. -..=.+...-+..+|+.+--+.++
T Consensus         2 V~vYtt~~c~~c~~-kk~c~~aK~lL~~kgV~feEidI~   39 (121)
T 1u6t_A            2 IRVYIASSSGSTAI-KKKQQDVLGFLEANKIGFEEKDIA   39 (121)
T ss_dssp             EEEEECTTCSCHHH-HHHHHHHHHHHHHTTCCEEEEECT
T ss_pred             EEEEecCCCCCccc-hHHHHHHHHHHHHCCCceEEEECC
Confidence            45567899999951 111122222344556777777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d2f8aa1	184	c.47.1.10 (A:12-195) Glutathione peroxidase {Human	1e-43
d1wp0a1	160	c.47.1.10 (A:138-297) Thioredoxin-like protein Sco	2e-13
d2b7ka1	169	c.47.1.10 (A:111-279) Thioredoxin-like protein Sco	5e-13
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	2e-09
d1xzoa1	172	c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1	3e-07
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	8e-07
d1zzoa1	134	c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri	1e-04
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	2e-04
d2cvba1	187	c.47.1.10 (A:2-188) Probable thiol-disulfide isome	3e-04
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	5e-04
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	5e-04
d1q98a_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i	0.001
d1xvqa_	166	c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium	0.002
d1qxha_	164	c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c	0.003
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	0.003

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 1e-43
 Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 25/181 (13%)

Query: 68  SVHDFSVKD-AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEIL 126
           SV+ FS +  A G+ V L   +GK+LLI NVAS  G T  +YT++++L  +   +GL +L
Sbjct: 2   SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVL 61

Query: 127 AFPCNQFGAQEPGDNEQIQEFAC-----TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
            FPCNQFG QE   NE+I            F+  F +F+K +VNG  A PL+  L+ +  
Sbjct: 62  GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 121

Query: 182 G-------------------LFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC 222
                               +  + + WNF KFLV  +G  + RY+     + IE  +E 
Sbjct: 122 APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 181

Query: 223 L 223
           L
Sbjct: 182 L 182

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 2e-13
 Identities = 19/155 (12%), Positives = 39/155 (25%), Gaps = 2/155 (1%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130
            FS+    G+      Y G+ LLI    + C        E         +    +     
Sbjct: 2   PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTP 61

Query: 131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKW 190
                    D ++        F  +           D  A  Y+   S       +    
Sbjct: 62  LFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIV 121

Query: 191 NFS--KFLVDKEGNVVERYAPTTSPLSIEVVLECL 223
           + +   +L+  +G  ++ +        I   +   
Sbjct: 122 DHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH 156

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 5e-13
 Identities = 16/145 (11%), Positives = 33/145 (22%), Gaps = 2/145 (1%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQC-GLTNSNYTELSQLYDKYKNQGLEILAFP 129
            F ++D  G +       GK  +I    S C  +      +L    +   ++    L   
Sbjct: 8   PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPL 67

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG-GLFGDSI 188
                          +  +              +V                        +
Sbjct: 68  FITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLV 127

Query: 189 KWNFSKFLVDKEGNVVERYAPTTSP 213
             +   +L+D EG  V+        
Sbjct: 128 DHSIFFYLMDPEGQFVDALGRNYDE 152

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 18/137 (13%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130
             ++K A  +   + + K K  LI   AS C L  S   +  +     K     ++    
Sbjct: 5   LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVAS 64

Query: 131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKW 190
             F        ++  +F        +P    V  NG   A                 I  
Sbjct: 65  PGF-----LHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLN-------------ISV 106

Query: 191 NFSKFLVDKEGNVVERY 207
             S  L+ K+G+V    
Sbjct: 107 YPSWALIGKDGDVQRIV 123

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 6/156 (3%)

Query: 69  VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQ---CGLTNSNYTELSQLYDKYKNQGLEI 125
           V  F+ ++  G++V L   KG++ L   + +         + +    Q   K +N  + I
Sbjct: 11  VEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRI 70

Query: 126 LAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG 185
           ++F  +    +     +    +  +    +F          + A   +K +     G   
Sbjct: 71  ISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEG--E 128

Query: 186 DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221
           D +    S +LV  +G V++ Y         + ++ 
Sbjct: 129 DQVIHQSSFYLVGPDGKVLKDY-NGVENTPYDDIIS 163

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 45.4 bits (106), Expect = 8e-07
 Identities = 20/160 (12%), Positives = 41/160 (25%), Gaps = 22/160 (13%)

Query: 62  ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ 121
            + +   + D + +DA G+   LS ++GK LL+   A+ C                    
Sbjct: 29  MASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEM------------- 75

Query: 122 GLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG 181
                  P       +               +        +          +   K+   
Sbjct: 76  -------PALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVF 128

Query: 182 GLFGDSIKWNF--SKFLVDKEGNVVERYAPTTSPLSIEVV 219
                  +     +  LVD +G  +   A      S + +
Sbjct: 129 QDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDAL 168

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 1/96 (1%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130
            FS K   G D       GK  ++   A  C         + Q+   +       +A   
Sbjct: 7   QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66

Query: 131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG 166
                QE  +   ++ F       +  ++    V  
Sbjct: 67  QVPAMQEFVNKYPVKTF-TQLADTDGSVWANFGVTQ 101

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 22/140 (15%)

Query: 70  HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
           +  +V      D+ L    GK +     AS C  + +   +L   Y  +           
Sbjct: 9   YSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHA---------- 58

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
             +   +    +          + A+ P       +      L               +K
Sbjct: 59  -EKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD----------VK 107

Query: 190 WNFSKFLVDKE-GNVVERYA 208
              +   V+ + GN++   A
Sbjct: 108 SIPTLVGVEADSGNIITTQA 127

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Length = 187

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 14/77 (18%), Positives = 28/77 (36%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130
           D  + D +G    LS +   LL +V + + C     +  EL  L ++Y+ +   +     
Sbjct: 14  DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINAN 73

Query: 131 NQFGAQEPGDNEQIQEF 147
           +     E    +     
Sbjct: 74  DYEKYPEDAPEKMAAFA 90

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 24/140 (17%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKY-KNQGLEILAFP 129
             +   +K  +V L    GK + +   AS C         L++ Y+K+   +  E++   
Sbjct: 10  GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLIS 69

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
            ++             ++         P FD+     +                FG  ++
Sbjct: 70  WDEN-------ESDFHDYYGKMPWLALP-FDQRSTVSELGK------------TFG--VE 107

Query: 190 WNFSKFLVDKE-GNVVERYA 208
              +   ++ + G ++   A
Sbjct: 108 SIPTLITINADTGAIIGTQA 127

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 12/66 (18%), Positives = 21/66 (31%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130
            F+     G   D +  +GK  ++      C   N+    LSQ+           +A   
Sbjct: 6   QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRA 65

Query: 131 NQFGAQ 136
           +    Q
Sbjct: 66  DVGAMQ 71

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 19/156 (12%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLT-NSNYTELSQLYDKYKNQGLEILAFP 129
           +F +      DV L+ +  K  ++    S       ++  + +Q   K  N    +L   
Sbjct: 24  NFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNT--IVLCIS 81

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
            +   AQ      +  E A T                    PL                 
Sbjct: 82  ADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSR----------- 130

Query: 190 WNFSKFLVDKEGNV--VERYAPTTSPLSIEVVLECL 223
              +  ++D++ NV   +         + E  L  L
Sbjct: 131 ---AVIVLDEQNNVLHSQLVEEIKEEPNYEAALAVL 163

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 17/155 (10%), Positives = 36/155 (23%), Gaps = 19/155 (12%)

Query: 71  DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC 130
            F++       +    ++GK +L+    S      +                +  ++   
Sbjct: 25  AFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAASGATVLCVSKDL 84

Query: 131 NQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKW 190
                +  G          + F+  F               +        G L       
Sbjct: 85  PFAQKRFCGAEGTENVMPASAFRDSF----------GEDYGVTIADGPMAGLLARAI--- 131

Query: 191 NFSKFLVDKEGNV--VERYAPTTSPLSIEVVLECL 223
                ++  +GNV   E         + E  L  L
Sbjct: 132 ----VVIGADGNVAYTELVPEIAQEPNYEAALAAL 162

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 71  DFSVKDAKGQDVDLSIYKG-KLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP 129
            F++      DV L  + G + +L +  +   G+  ++  + +QL  +  N  +  ++  
Sbjct: 26  TFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISA- 84

Query: 130 CNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIK 189
                     D    Q   C        I      N +        +  + G L G + +
Sbjct: 85  ----------DLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAY--GVAIADGPLKGLAAR 132

Query: 190 WNFSKFLVDKEGNVV 204
                 ++D+  NV+
Sbjct: 133 AV---VVIDENDNVI 144

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 22/153 (14%)

Query: 71  DFSVKDAK--GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAF 128
           + + + A   G+     +   K  LI   +  C L      ++++  DKY++Q       
Sbjct: 9   ELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ------L 62

Query: 129 PCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSI 188
                      D+    +   T  + +      VD +                  F    
Sbjct: 63  NVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTD------------AFE--N 108

Query: 189 KWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE 221
           ++  + ++ DK G +    A  +    +E  + 
Sbjct: 109 EYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.97
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.97
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.97
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.97
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.96
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.96
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.96
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.95
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.95
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.95
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.95
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.94
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.94
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.94
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.94
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.94
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.94
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.93
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.92
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.92
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.92
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.92
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.92
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.91
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.91
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.91
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.91
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.91
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.91
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.9
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.9
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.9
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.88
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.88
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.85
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.68
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.66
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.66
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.66
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.65
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.62
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.62
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.61
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.61
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.58
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.57
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.57
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.57
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.56
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.56
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.55
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.54
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.54
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.52
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.49
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.46
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.46
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.45
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.4
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.38
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.35
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.34
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.27
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.26
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.25
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.1
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.07
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	99.06
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.04
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.03
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.95
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.74
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.55
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.16
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.9
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.79
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.55
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.53
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.46
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.25
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	94.74
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	93.08
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	92.92
d1pn0a2	201	Phenol hydroxylase, C-terminal domain {Soil-living	92.74
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	92.64
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	92.48
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	91.07
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	89.95
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	89.44
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	88.61
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	88.52
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	87.04
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	86.82
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	82.57

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=4.3e-32  Score=207.11  Aligned_cols=146  Identities=19%  Similarity=0.308  Sum_probs=122.5

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      .+++|+++|+|++.|++|+.++|++++||++||+||++|||+|+.++|.|++++++|+++ +.+++|+.++......++.
T Consensus         5 ~l~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~-v~~v~i~snd~~~~~~~~~   83 (187)
T d2cvba1           5 ELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAP   83 (187)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSH
T ss_pred             CCCCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc-ceeeeeeccccccccccch
Confidence            347899999999999999999999999999999999999999999999999999999875 9999998765455556678


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC--------CCCh
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP--------TTSP  213 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g--------~~~~  213 (225)
                      +.++++. ++++.+||++  .|.++. ..+.|             ++.++|++||||++|+|+++..-        ..+.
T Consensus        84 e~~~~~~-~~~~~~~p~l--~D~~~~-~~~~~-------------~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~  146 (187)
T d2cvba1          84 EKMAAFA-EEHGIFFPYL--LDETQE-VAKAY-------------RALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQS  146 (187)
T ss_dssp             HHHHHHH-HHHTCCSCEE--ECSSSH-HHHHT-------------TCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCC
T ss_pred             HHHHHHH-HHhCCcceee--echhhh-hcccc-------------cccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCH
Confidence            8999998 7889999998  454433 34444             89999999999999999987431        1223


Q ss_pred             hhHHHHHHhhhC
Q 027311          214 LSIEVVLECLCC  225 (225)
Q Consensus       214 ~~l~~~l~~ll~  225 (225)
                      .+|+..|+++|+
T Consensus       147 ~~L~~Ai~~ll~  158 (187)
T d2cvba1         147 HDLEAAIEALLR  158 (187)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            469999999874

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-31  Score=200.93  Aligned_cols=158  Identities=39%  Similarity=0.654  Sum_probs=142.2

Q ss_pred             eecCeEEeCCC-CCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHH
Q 027311           68 SVHDFSVKDAK-GQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQE  146 (225)
Q Consensus        68 ~~p~f~l~~~~-G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~  146 (225)
                      .+.||+++|++ |+.++|++|+||++||.+|||||++|..+.+.|++++++|+++|++|++++.++++.+++.+.+++++
T Consensus         2 siydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~   81 (184)
T d2f8aa1           2 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILN   81 (184)
T ss_dssp             CGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHH
T ss_pred             ceeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhhh
Confidence            57899999986 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-----hcCCCcceeeeecCCCCCchhhhhhccccCCC-------------------CCCCccccceeEEEECCCCc
Q 027311          147 FACT-----RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGG-------------------LFGDSIKWNFSKFLVDKEGN  202 (225)
Q Consensus       147 ~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-------------------~~~~~v~~~P~~~lid~~G~  202 (225)
                      |++.     .++.+||++...+..|.....+|.++....+.                   ..+..|.|..+.||||++|+
T Consensus        82 f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~  161 (184)
T d2f8aa1          82 SLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGV  161 (184)
T ss_dssp             HHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred             hhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCC
Confidence            9842     57889999998999999999999988754321                   12235788889999999999


Q ss_pred             EEEEcCCCCChhhHHHHHHhhhC
Q 027311          203 VVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       203 I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      ++.++.+..+++++++.|++||+
T Consensus       162 vv~rf~~~~~p~~i~~~Ie~lL~  184 (184)
T d2f8aa1         162 PLRRYSRRFQTIDIEPDIEALLS  184 (184)
T ss_dssp             EEEEECTTSCGGGGHHHHHHHHC
T ss_pred             EEEEECCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999986

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=4.7e-31  Score=191.74  Aligned_cols=135  Identities=21%  Similarity=0.427  Sum_probs=118.9

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI  144 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~  144 (225)
                      .|+++|+|++.+.+|+++++++++||++||.||++||++|..+++.++++++++.++++.+++|+.|+       +.+++
T Consensus         1 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~-------~~~~~   73 (137)
T d1st9a_           1 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGE-------SKIAV   73 (137)
T ss_dssp             CCEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESC-------CHHHH
T ss_pred             CcCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccc-------hhhhH
Confidence            48999999999999999999999999999999999999999999999999999999999999999875       88999


Q ss_pred             HHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          145 QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      ++|+ ++++.+||++  .|.++. ..+.|             ++.++|++||||++|+|++++.|..+.+++++.|+.|
T Consensus        74 ~~~~-~~~~~~~~~~--~d~~~~-~~~~~-------------~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_          74 HNFM-KSYGVNFPVV--LDTDRQ-VLDAY-------------DVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             HHHH-HHTTCCSCEE--EETTSH-HHHHT-------------TCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHH-HHcCCCcccc--ccccch-hhhhh-------------hccccceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence            9998 7889999988  344332 33333             7888999999999999999999998888877766543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.6e-30  Score=188.25  Aligned_cols=132  Identities=16%  Similarity=0.242  Sum_probs=113.9

Q ss_pred             CceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHH
Q 027311           66 KTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        66 g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~  145 (225)
                      |+..++|++++++|+++++++++||++||+||++|||+|+.++|.|++++++++  ++.+++|+.++       +.+.++
T Consensus         1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~~~-------~~~~~~   71 (134)
T d1lu4a_           1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRA-------DVGAMQ   71 (134)
T ss_dssp             CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS-------CHHHHH
T ss_pred             CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc--ccccccccccc-------chhhhh
Confidence            678899999999999999999999999999999999999999999999998764  59999999875       788999


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEE--cCCCCChhhHHHHHHhh
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVER--YAPTTSPLSIEVVLECL  223 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~--~~g~~~~~~l~~~l~~l  223 (225)
                      +|+ ++++++||++  .|.++. ..+.|             ++.++|++||||++|+|++.  ..|..+.+++.+.|++|
T Consensus        72 ~~~-~~~~~~~p~~--~d~~~~-~~~~~-------------~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          72 SFV-SKYNLNFTNL--NDADGV-IWARY-------------NVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             HHH-HHHTCCSEEE--ECTTSH-HHHHT-------------TCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred             hhh-hhhcccccee--eCchHH-HHHHc-------------CCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence            998 8889999988  454433 33334             88999999999999999875  45667888999998875

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=1.4e-29  Score=185.22  Aligned_cols=140  Identities=19%  Similarity=0.266  Sum_probs=120.0

Q ss_pred             CCCceecCeEEeC--CCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           64 QSKTSVHDFSVKD--AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        64 ~~g~~~p~f~l~~--~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ++|+++|+|++.+  .+|+.++++.++||+++|+||++|||+|+.++|.|++++++++++ +.+++|+.+..+  ...+.
T Consensus         2 k~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~-~~~i~v~~~~~~--~~~~~   78 (143)
T d2b5xa1           2 KLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSE--DDLDP   78 (143)
T ss_dssp             CTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCST--TTSSH
T ss_pred             CCCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc-ccceeEEeeccc--cccch
Confidence            6899999999777  489999999999999999999999999999999999999999864 999999987532  23366


Q ss_pred             HHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          142 EQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      +.+++++ ++++++||++  .|.++. ..+.|             ++.++|++||||++|+|++++.|..+.+++++.|+
T Consensus        79 ~~~~~~~-~~~~~~~p~~--~D~~~~-~~~~~-------------~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~  141 (143)
T d2b5xa1          79 GKIKETA-AEHDITQPIF--VDSDHA-LTDAF-------------ENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN  141 (143)
T ss_dssp             HHHHHHH-HHTTCCSCEE--ECSSCH-HHHHT-------------CCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHH
T ss_pred             hhhhhHH-HhhccCcccc--ccCccc-hHHHc-------------CCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            7888888 8889999998  444432 33334             88889999999999999999999999999999998


Q ss_pred             hh
Q 027311          222 CL  223 (225)
Q Consensus       222 ~l  223 (225)
                      +|
T Consensus       142 ~l  143 (143)
T d2b5xa1         142 RV  143 (143)
T ss_dssp             HH
T ss_pred             hC
Confidence            86

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.96  E-value=5.8e-29  Score=188.06  Aligned_cols=143  Identities=19%  Similarity=0.207  Sum_probs=116.1

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      ..+.++|+|+++|++|+.++|++++||++||+||++||++|+.+++.+++++++++++++.+++|++|.      ++.++
T Consensus        31 ~~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~------~~~~~  104 (176)
T d1jfua_          31 SAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT------RDPEK  104 (176)
T ss_dssp             CSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCC------SCTTH
T ss_pred             CCCCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccc------cchhh
Confidence            456789999999999999999999999999999999999999999999999999999999999999873      25678


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--ChhhHHHHHH
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--SPLSIEVVLE  221 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--~~~~l~~~l~  221 (225)
                      +++|+ ++++..++.+. .|..+. ..+.+...         +++.++|++||||++|+|++++.|..  +.+++.+.|+
T Consensus       105 ~~~~~-~~~~~~~~~~~-~d~~~~-~~~~~~~~---------~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~  172 (176)
T d1jfua_         105 PKTFL-KEANLTRLGYF-NDQKAK-VFQDLKAI---------GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIR  172 (176)
T ss_dssp             HHHHH-HHTTCCTTCCE-ECTTCH-HHHHHHTT---------TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHH
T ss_pred             hhhhH-hhhCCcceeee-ecchhH-HHHHHhhh---------ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHH
Confidence            88898 77788876431 233322 22222211         26778899999999999999988864  4467888888


Q ss_pred             hhh
Q 027311          222 CLC  224 (225)
Q Consensus       222 ~ll  224 (225)
                      +|+
T Consensus       173 al~  175 (176)
T d1jfua_         173 AAT  175 (176)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            876

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=1.3e-28  Score=177.97  Aligned_cols=128  Identities=18%  Similarity=0.213  Sum_probs=107.3

Q ss_pred             ecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           69 VHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        69 ~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      .++|+++|.+|+.+++++++||++||+||++|||+|+.++|.++++++++++  ..+++|+.++       +.+..++++
T Consensus         5 ~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~v~v~~~d-------~~~~~~~~~   75 (134)
T d1zzoa1           5 QLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE--VTFVGVAGLD-------QVPAMQEFV   75 (134)
T ss_dssp             GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSS-------CHHHHHHHH
T ss_pred             CcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc--cccccccccc-------cchhHHHHH
Confidence            4679999999999999999999999999999999999999999999999865  6777787654       778888888


Q ss_pred             HhhcCC-CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          149 CTRFKA-EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       149 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                       ++++. .|+++  .|.++. ..+.|             ++.++|++||||++|+|++ +.|..+.+++++.|++|
T Consensus        76 -~~~~~~~~~~l--~D~~~~-~~~~~-------------~v~~~P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          76 -NKYPVKTFTQL--ADTDGS-VWANF-------------GVTQQPAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             -HHTTCTTSEEE--ECTTCH-HHHHT-------------TCCSSSEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred             -HhcCCcceeEE--eeccch-HHHhc-------------CCCccCeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence             56666 48887  454443 33333             8889999999999999976 45888899999999887

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.95  E-value=9.1e-29  Score=180.72  Aligned_cols=137  Identities=18%  Similarity=0.152  Sum_probs=113.4

Q ss_pred             cCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311           70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC  149 (225)
Q Consensus        70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~  149 (225)
                      +..++++.+|+++++++++||++||+|||+|||+|+.++|.+++++++++..++.+++|+.+....+.  ......++..
T Consensus         4 ~~~~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~   81 (143)
T d2fy6a1           4 TLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEK--KDGDFQKWYA   81 (143)
T ss_dssp             HHHTCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCC--CTTHHHHHHT
T ss_pred             CcceeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeeccccc--chhhhhhhhh
Confidence            34578999999999999999999999999999999999999999999999989999999987544333  3456666664


Q ss_pred             hhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          150 TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       150 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ..+...||++  .|..+. ....|             ++.++|+++|||++|+|++++.|..+.+++++.|+.+.
T Consensus        82 ~~~~~~~~~~--~D~~~~-~~~~~-------------~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~  140 (143)
T d2fy6a1          82 GLNYPKLPVV--TDNGGT-IAQSL-------------NISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN  140 (143)
T ss_dssp             TSCCTTSCEE--ECTTCH-HHHHT-------------TCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             hcCCcccccc--cccchH-HHHHc-------------CCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHh
Confidence            6666778988  444433 33334             88899999999999999999999999999999988753

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=9e-28  Score=177.41  Aligned_cols=144  Identities=19%  Similarity=0.247  Sum_probs=112.1

Q ss_pred             cCCCceecCeEEeCCCCCeecCCccCCC-EEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIYKGK-LLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~~gk-~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      +++|+++|+|+++|.+|++++|++++|| ++|+ +||++|||+|..+++.+++++++++++|+++++||.|        +
T Consensus         2 l~vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d--------~   73 (153)
T d1xvwa1           2 LNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG--------P   73 (153)
T ss_dssp             CCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC--------C
T ss_pred             CCCcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccch--------h
Confidence            4789999999999999999999999996 4444 5669999999999999999999999999999999987        8


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----ChhhH
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----SPLSI  216 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----~~~~l  216 (225)
                      .+.+++|. ++++++|+++.+.+.++ ...+.|+......      + ...|++||||++|+|++.+.+..    +..++
T Consensus        74 ~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~ygv~~~~~------g-~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~  144 (153)
T d1xvwa1          74 PPTHKIWA-TQSGFTFPLLSDFWPHG-AVSQAYGVFNEQA------G-IANRGTFVVDRSGIIRFAEMKQPGEVRDQRLW  144 (153)
T ss_dssp             HHHHHHHH-HHHTCCSCEEECTTTTT-HHHHHTTCEETTT------T-EECSEEEEECTTSBEEEEEECCTTCCCCHHHH
T ss_pred             hhHHHHHh-hhhccceeEEecccccc-hhHHHhhhhhhcc------C-ceeeeEEEECCCCEEEEEEEeCCCcccCHHHH
Confidence            89999998 78899999885433333 2444554332111      2 13478999999999998875322    23466


Q ss_pred             HHHHHhh
Q 027311          217 EVVLECL  223 (225)
Q Consensus       217 ~~~l~~l  223 (225)
                      .+.|++|
T Consensus       145 ~~~L~aL  151 (153)
T d1xvwa1         145 TDALAAL  151 (153)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            6777665

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.95  E-value=1.4e-27  Score=174.69  Aligned_cols=131  Identities=21%  Similarity=0.302  Sum_probs=104.4

Q ss_pred             eecCeEEeCCCC--------CeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           68 SVHDFSVKDAKG--------QDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        68 ~~p~f~l~~~~G--------~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ++|+|++.+.+|        ..+++++++||++||+||++||++|+.++|.++++++++   ++++++|+.+.       
T Consensus         2 paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~---~~~~~~i~~~~-------   71 (144)
T d1knga_           2 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK---RFQLVGINYKD-------   71 (144)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT---TSEEEEEEESC-------
T ss_pred             CCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc---CceeEEEEeee-------
Confidence            556666665555        678899999999999999999999999999999886554   58899999875       


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHH
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVV  219 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~  219 (225)
                      +..+.+++. ++++..++... .|.++. ..+.|             ++.++|+++|||++|+|++++.|..+.+++++.
T Consensus        72 ~~~~~~~~~-~~~~~~~~~~~-~d~~~~-~~~~~-------------~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~  135 (144)
T d1knga_          72 AADNARRFL-GRYGNPFGRVG-VDANGR-ASIEW-------------GVYGVPETFVVGREGTIVYKLVGPITPDNLRSV  135 (144)
T ss_dssp             CHHHHHHHH-HHHCCCCSEEE-EETTSH-HHHHT-------------TCCSSCEEEEECTTSBEEEEEESCCCHHHHHHT
T ss_pred             chHHHHHHH-HHcCCcccccc-ccccch-hhhhc-------------CccccceEEEEcCCCeEEEEEeCCCCHHHHHHH
Confidence            777888887 67788877542 444433 33444             888999999999999999999999988887777


Q ss_pred             HHhhh
Q 027311          220 LECLC  224 (225)
Q Consensus       220 l~~ll  224 (225)
                      |+++|
T Consensus       136 i~~~l  140 (144)
T d1knga_         136 LLPQM  140 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.95  E-value=7.7e-27  Score=174.39  Aligned_cols=142  Identities=13%  Similarity=0.140  Sum_probs=110.8

Q ss_pred             CCCceecCeEEeCC----CCCeecCCccCCCEEEEEEccc-CCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDA----KGQDVDLSIYKGKLLLIVNVAS-QCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        64 ~~g~~~p~f~l~~~----~G~~~~l~~~~gk~vlv~F~~t-wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      .+|+++|+|++++.    +|++++|++++||++||+||.. |||+|..+++.|++.+++|+++|++|++||.|       
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D-------   74 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTD-------   74 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESS-------
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccc-------
Confidence            48999999999974    4467999999999999999955 99999999999999999999999999999998       


Q ss_pred             CCHHHHHHHHH---hhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----
Q 027311          139 GDNEQIQEFAC---TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----  211 (225)
Q Consensus       139 ~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----  211 (225)
                       +.+..++|..   ..++++||++  .|.++ ...+.|+.....       .-...|++||||++|+|++.+.+..    
T Consensus        75 -~~~~~~~~~~~~~~~~~~~fpll--~D~~~-~v~~~ygv~~~~-------~~~~~r~tfvID~~G~I~~~~i~~~~~~r  143 (166)
T d1we0a1          75 -THFVHKAWHENSPAVGSIEYIMI--GDPSQ-TISRQFDVLNEE-------TGLADRGTFIIDPDGVIQAIEINADGIGR  143 (166)
T ss_dssp             -CHHHHHHHHHSCHHHHTCCSEEE--ECTTC-HHHHHTTCEETT-------TTEECEEEEEECTTSBEEEEEEECTTSCC
T ss_pred             -cHHHHHHHhhhhhhhcccccccc--cCccc-HHHHHhCCCccc-------cCcccceEEEECCCCcEEEEEEcCCCCCC
Confidence             7777777762   2247899998  45544 355567544321       1124689999999999999866433    


Q ss_pred             ChhhHHHHHHhh
Q 027311          212 SPLSIEVVLECL  223 (225)
Q Consensus       212 ~~~~l~~~l~~l  223 (225)
                      +.+++.+.|+.|
T Consensus       144 ~~~eil~~lkal  155 (166)
T d1we0a1         144 DASTLINKVKAA  155 (166)
T ss_dssp             CTTHHHHHHHHH
T ss_pred             CHHHHHHHHHhc
Confidence            345666666654

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=6.9e-28  Score=179.22  Aligned_cols=147  Identities=14%  Similarity=0.219  Sum_probs=116.9

Q ss_pred             cCCCceecCeEEeCCCCCeecCCcc--CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQDVDLSIY--KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~~~~l~~~--~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      +++|+++|+|++.|++|+.++|+++  +||++||.|| ++|||+|..+++.++++++++++.++.+++|+.|        
T Consensus         2 i~vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------   73 (160)
T d2cx4a1           2 VELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVD--------   73 (160)
T ss_dssp             CCTTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESS--------
T ss_pred             CcCCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccccccccccccc--------
Confidence            3789999999999999999999997  8999999998 8999999999999999999999999999999987        


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC-----CChh
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT-----TSPL  214 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~-----~~~~  214 (225)
                      +.+.++++. ++++++|+++.  |.++ ...+.|+.......+   ....+.|++||||++|+|++++.+.     .+.+
T Consensus        74 ~~~~~~~~~-~~~~~~~~~l~--D~~~-~~~~~~gv~~~~~~~---~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~  146 (160)
T d2cx4a1          74 SPWCLKKFK-DENRLAFNLLS--DYNR-EVIKLYNVYHEDLKG---LKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYD  146 (160)
T ss_dssp             CHHHHHHHH-HHHTCSSEEEE--CTTS-HHHHHTTCEEEEETT---EEEEECCEEEEECTTSBEEEEEECSSTTCCCCHH
T ss_pred             chhhhhhhc-ccceeeEEEee--cCCc-chHHHcCcccccccc---ccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHH
Confidence            778888887 78899999984  4443 344455443322111   1345678999999999999986543     2345


Q ss_pred             hHHHHHHhhh
Q 027311          215 SIEVVLECLC  224 (225)
Q Consensus       215 ~l~~~l~~ll  224 (225)
                      ++.+.+++++
T Consensus       147 eil~~l~~l~  156 (160)
T d2cx4a1         147 EVVREANKIA  156 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            6666666654

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.94  E-value=6e-27  Score=175.40  Aligned_cols=143  Identities=15%  Similarity=0.240  Sum_probs=109.7

Q ss_pred             cCCCceecCeE----EeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           63 SQSKTSVHDFS----VKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        63 ~~~g~~~p~f~----l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      +++|+++|+|+    +.|.+|+.++|++++||++||+|| ++||++|..+++.|++.+++++++++++++||.|      
T Consensus         3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d------   76 (167)
T d1e2ya_           3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCD------   76 (167)
T ss_dssp             CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             ccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCC------
Confidence            47999999999    567899999999999999999999 9999999999999999999999999999999998      


Q ss_pred             CCCHHHHHHHHHhh------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          138 PGDNEQIQEFACTR------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       138 ~~~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                        +.+...+|..+.      ...+|+.+  .|..+. ..+.|+......      + ..+|++||||++|+|++.+.+..
T Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~l--~d~~~~-~~~~y~v~~~~~------g-~~~r~tfvID~~G~Ir~~~~~~~  144 (167)
T d1e2ya_          77 --SEYSHLQWTSVDRKKGGLGPMAIPML--ADKTKA-IARAYGVLDEDS------G-VAYRGVFIIDPNGKLRQIIINDM  144 (167)
T ss_dssp             --CHHHHHHHHHSCGGGTCCCCCSSCEE--ECTTCH-HHHHHTCEETTT------T-EECEEEEEECTTSBEEEEEEECT
T ss_pred             --cHHhHHHHHhhHHHhccccccccccc--ccchhH-HHHHcCCCcccC------C-CceeEEEEECCCCEEEEEEEcCC
Confidence              777777776221      13567776  344433 444564432211      2 24689999999999998865433


Q ss_pred             ----ChhhHHHHHHhh
Q 027311          212 ----SPLSIEVVLECL  223 (225)
Q Consensus       212 ----~~~~l~~~l~~l  223 (225)
                          +.+++.+.|++|
T Consensus       145 ~~~~~~~evL~~l~al  160 (167)
T d1e2ya_         145 PIGRNVEEVIRLVEAL  160 (167)
T ss_dssp             TBCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence                345666666554

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=4.3e-26  Score=171.50  Aligned_cols=153  Identities=19%  Similarity=0.318  Sum_probs=116.9

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcC--CeEEEEEecCCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQ--GLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~--~~~iv~Is~d~~~~~~~~~  140 (225)
                      ..+.++|+|+++|.+|+.+++++++||++||+||++||| .|..+++.|+++++++++.  ++.+++||+|    ++.|+
T Consensus         6 p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD----p~~Dt   81 (172)
T d1xzoa1           6 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD----PENDK   81 (172)
T ss_dssp             CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC----TTTCC
T ss_pred             CCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc----cccch
Confidence            577899999999999999999999999999999999998 8999999999999999754  4899999998    56779


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCc-h----hhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--Ch
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNA-A----PLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--SP  213 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~----~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--~~  213 (225)
                      ++.+++|+ +.++..++.+.......... .    ..|.......  ..++.+.+.|.+||||++|+|++.+.|..  +.
T Consensus        82 p~~l~~y~-~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~  158 (172)
T d1xzoa1          82 PKQLKKFA-ANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKP--EGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPY  158 (172)
T ss_dssp             HHHHHHHH-TTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCC--SSCCSCCSCCEEEEECTTSEEEEEEESSSSCCH
T ss_pred             HHHHHHHH-HHhccccccceeeccchHHHHHHHHHhheeeEEecc--CCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCH
Confidence            99999998 78888887543222111111 1    1111111111  11236778899999999999998887643  45


Q ss_pred             hhHHHHHHhh
Q 027311          214 LSIEVVLECL  223 (225)
Q Consensus       214 ~~l~~~l~~l  223 (225)
                      +++.++|+++
T Consensus       159 ~~l~~dik~~  168 (172)
T d1xzoa1         159 DDIISDVKSA  168 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7788888765

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1.5e-26  Score=173.51  Aligned_cols=141  Identities=13%  Similarity=0.176  Sum_probs=112.3

Q ss_pred             cCCCceecCeEEeCCCC---------------CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEE
Q 027311           63 SQSKTSVHDFSVKDAKG---------------QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEIL  126 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G---------------~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv  126 (225)
                      +++|+++|+|++.+..|               +.++|++++||++||+|| ++|||+|..+++.+++.+++++++|++++
T Consensus         3 l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv   82 (169)
T d2bmxa1           3 LTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQIL   82 (169)
T ss_dssp             CCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEE
T ss_pred             CCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCccee
Confidence            47999999999999888               678999999999999999 99999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCHHHHHHHHHhhcC----CCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCc
Q 027311          127 AFPCNQFGAQEPGDNEQIQEFACTRFK----AEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN  202 (225)
Q Consensus       127 ~Is~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~  202 (225)
                      +||.|        +.....+|. +.++    ++||++.  |.++ ...+.|+.+..        .-...|++||||++|+
T Consensus        83 ~is~d--------~~~~~~~~~-~~~~~~~~~~f~ll~--D~~~-~v~~~ygv~~~--------~~~~~r~~fvID~~G~  142 (169)
T d2bmxa1          83 GVSID--------SEFAHFQWR-AQHNDLKTLPFPMLS--DIKR-ELSQAAGVLNA--------DGVADRVTFIVDPNNE  142 (169)
T ss_dssp             EEESS--------CHHHHHHHH-HHCTTGGGCCSCEEE--CTTS-HHHHHHTCBCT--------TSSBCEEEEEECTTSB
T ss_pred             ecccc--------chhhhhhhc-ccccccccceEEEEe--ccHH-HHHHHcCCCcc--------CCccceeEEEEcCCCE
Confidence            99998        677777776 4443    8899984  5444 34555654321        2245789999999999


Q ss_pred             EEEEcCCCC----ChhhHHHHHHhh
Q 027311          203 VVERYAPTT----SPLSIEVVLECL  223 (225)
Q Consensus       203 I~~~~~g~~----~~~~l~~~l~~l  223 (225)
                      |++.+.+..    +.+++.+.|++|
T Consensus       143 I~~~~~~~~~~~~~~~evl~~l~al  167 (169)
T d2bmxa1         143 IQFVSATAGSVGRNVDEVLRVLDAL  167 (169)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            998765432    335666666655

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.7e-27  Score=170.73  Aligned_cols=124  Identities=20%  Similarity=0.244  Sum_probs=99.3

Q ss_pred             EeCCCCCeecCCcc-CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 027311           74 VKDAKGQDVDLSIY-KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF  152 (225)
Q Consensus        74 l~~~~G~~~~l~~~-~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~  152 (225)
                      ..|..|+.++++++ +||++||+||||||++|+.++|.|+++++    +++.+++++.+.       +......+. .+.
T Consensus         4 ~ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~~~vi~i~~~~-------~~~~~~~~~-~~~   71 (136)
T d1z5ye1           4 SLDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QGIRVVGMNYKD-------DRQKAISWL-KEL   71 (136)
T ss_dssp             BSSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TTCCEEEEEESC-------CHHHHHHHH-HHH
T ss_pred             cccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hhhhhccccccc-------chhhhHHHH-HHc
Confidence            34566999999998 89999999999999999999999988754    468999999875       677777777 555


Q ss_pred             CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          153 KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       153 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      +..++.+. .|.++. ....|             ++.++|+++|||++|+|++++.|..+.+++++.|+++|
T Consensus        72 ~~~~~~~~-~d~~~~-~~~~~-------------~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          72 GNPYALSL-FDGDGM-LGLDL-------------GVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             CCCCSEEE-EESSCH-HHHHH-------------TCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCccceee-cccchh-HHHhc-------------ccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence            65555331 344443 33334             88899999999999999999999998888888887776

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.94  E-value=1.4e-27  Score=174.66  Aligned_cols=120  Identities=12%  Similarity=0.217  Sum_probs=95.4

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHh-cCCeEEEEEecCCCCCCCCCCHH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      ..|+.+|+|+....+|++++|++++||++||+|||+||++|+.++|.|++++++|+ +.++++++|+.|+       +.+
T Consensus         3 ~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~-------~~~   75 (144)
T d1o73a_           3 GLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDE-------NES   75 (144)
T ss_dssp             GGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS-------SHH
T ss_pred             CcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecch-------hHH
Confidence            46789999999999999999999999999999999999999999999999999996 4579999999985       778


Q ss_pred             HHHHHHHhhcCCCcceeeeecCCCC--CchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEEc
Q 027311          143 QIQEFACTRFKAEFPIFDKVDVNGD--NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVERY  207 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~~  207 (225)
                      ..+++. ++... +.+.  .+....  ...+.|             ++.++|++||||++ |+|+.+.
T Consensus        76 ~~~~~~-~~~~~-~~~~--~~~~~~~~~l~~~y-------------~v~~~Pt~~lID~~~G~Ii~~~  126 (144)
T d1o73a_          76 DFHDYY-GKMPW-LALP--FDQRSTVSELGKTF-------------GVESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHHH-TTCSS-EECC--TTCHHHHHHHHHHH-------------TCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHHH-Hhccc-ccee--eeccchHHHHHHHc-------------CCCcCCEEEEEECCCCEEEeec
Confidence            888887 44321 1111  111111  122333             88999999999998 8998764

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.93  E-value=1.5e-25  Score=171.00  Aligned_cols=141  Identities=16%  Similarity=0.206  Sum_probs=112.1

Q ss_pred             CCCceecCeE----EeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           64 QSKTSVHDFS----VKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        64 ~~g~~~p~f~----l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      ..|+++|+|+    +.|.+|+.++|++++||++||+|| ++||+.|..|++.++++++++++.|++|++||.|       
T Consensus         4 e~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~D-------   76 (194)
T d1uula_           4 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMD-------   76 (194)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-------
T ss_pred             ccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecC-------
Confidence            6789999999    457789999999999999999999 9999999999999999999999999999999998       


Q ss_pred             CCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC
Q 027311          139 GDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT  211 (225)
Q Consensus       139 ~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~  211 (225)
                       +....++|. +++       +++||++.  |.++. ..+.|+.+....      + ...|++||||++|+|++.+....
T Consensus        77 -s~~s~~~~~-~~~~~~~~~~~l~fplls--D~~~~-v~~~ygv~~~~~------~-~~~R~tfvID~~G~I~~~~~~~~  144 (194)
T d1uula_          77 -SEYSHLAWT-SIERKRGGLGQMNIPILA--DKTKC-IMKSYGVLKEED------G-VAYRGLFIIDPKQNLRQITVNDL  144 (194)
T ss_dssp             -CHHHHHHHH-HSCGGGTCCCSCSSCEEE--CTTCH-HHHHHTCEETTT------T-EECEEEEEECTTSBEEEEEEECT
T ss_pred             -chhhhhhhh-hhhhhhccccCCCcceee--CCcch-HHHHcCCeeccC------C-ceEEEEEEECCCCeEEEEEEecC
Confidence             778888886 332       57899984  54444 555675543321      2 34689999999999999865433


Q ss_pred             ----ChhhHHHHHHhh
Q 027311          212 ----SPLSIEVVLECL  223 (225)
Q Consensus       212 ----~~~~l~~~l~~l  223 (225)
                          +.+++.+.|++|
T Consensus       145 ~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         145 PVGRDVDEALRLVKAF  160 (194)
T ss_dssp             TBCCCHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHh
Confidence                345666666554

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=5.1e-25  Score=163.18  Aligned_cols=138  Identities=11%  Similarity=0.140  Sum_probs=108.1

Q ss_pred             ceecCeEEeC---CCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHH
Q 027311           67 TSVHDFSVKD---AKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNE  142 (225)
Q Consensus        67 ~~~p~f~l~~---~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~  142 (225)
                      +.+|+|++++   .+|+.++|++++||++||+|| +.|||.|..+++.+++.++++.+.|++|++||.|        +..
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d--------~~~   72 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD--------SHF   72 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS--------CHH
T ss_pred             CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCc--------CHH
Confidence            4689999774   466799999999999999999 8899999999999999999999999999999998        788


Q ss_pred             HHHHHHHhh-------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC---
Q 027311          143 QIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS---  212 (225)
Q Consensus       143 ~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~---  212 (225)
                      ..++|+ ++       ++++||++.  |..+. ..+.|+......      ++ ..+++||||++|+|++.+.+..+   
T Consensus        73 ~~~~~~-~~~~~~~~~~~~~f~lls--D~~~~-~~~~ygv~~~~~------g~-~~R~tfvID~~G~I~~~~i~~~~~~~  141 (158)
T d1zyea1          73 SHLAWI-NTPRKNGGLGHMNIALLS--DLTKQ-ISRDYGVLLEGP------GL-ALRGLFIIDPNGVIKHLSVNDLPVGR  141 (158)
T ss_dssp             HHHHHH-TSCGGGTCCCSCSSEEEE--CTTSH-HHHHTTCEETTT------TE-ECEEEEEECTTSBEEEEEEECTTCCC
T ss_pred             HHHHHH-hhhHhhcccccccccccc--ccccH-HHHHHHhccccC------Cc-cccEEEEECCCCEEEEEEEeCCCCCC
Confidence            889997 43       478999984  54443 455564433221      22 46899999999999987654332   


Q ss_pred             -hhhHHHHHHhh
Q 027311          213 -PLSIEVVLECL  223 (225)
Q Consensus       213 -~~~l~~~l~~l  223 (225)
                       .+++.+.|++|
T Consensus       142 ~~~EiL~~lkal  153 (158)
T d1zyea1         142 SVEETLRLVKAF  153 (158)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh
Confidence             35666666544

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.92  E-value=4.7e-25  Score=165.25  Aligned_cols=140  Identities=14%  Similarity=0.197  Sum_probs=109.5

Q ss_pred             CCCceecCeEEeCCCC-----CeecCCccCCC-EEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKG-----QDVDLSIYKGK-LLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQ  136 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G-----~~~~l~~~~gk-~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~  136 (225)
                      .+|+++|||++++.+|     +.++|++++|| ++|++|| ++|||.|..+++.+++.++++++.|++|++||.|     
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d-----   76 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID-----   76 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESS-----
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEeccccc-----
Confidence            4899999999999988     47999999986 8999999 9999999999999999999999999999999998     


Q ss_pred             CCCCHHHHHHHHHhhc-------CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          137 EPGDNEQIQEFACTRF-------KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                         +....++|. +++       +++|+++.  |.++ ...+.|+.+...       + ...|++||||++|+|++.+.+
T Consensus        77 ---~~~~~~~~~-~~~~~~~~~~~~~~~~l~--D~~~-~v~~~ygv~~~~-------~-~~~r~tfvID~~G~I~~~~~~  141 (170)
T d1zofa1          77 ---SEQVHFAWK-NTPVEKGGIGQVSFPMVA--DITK-SISRDYDVLFEE-------A-IALRGAFLIDKNMKVRHAVIN  141 (170)
T ss_dssp             ---CHHHHHHHH-TSCGGGTCCCCCSSCEEE--CTTS-HHHHHTTCEETT-------T-EECEEEEEEETTTEEEEEEEE
T ss_pred             ---chhhHHHHH-hhhhhcccccCccccccc--cccc-HHHHHcCCCccc-------c-ceeEEEEEEcCCCeEEEEEEe
Confidence               778878776 443       67899884  5443 345566543221       2 246899999999999987643


Q ss_pred             CC----ChhhHHHHHHhh
Q 027311          210 TT----SPLSIEVVLECL  223 (225)
Q Consensus       210 ~~----~~~~l~~~l~~l  223 (225)
                      ..    +.+++.+.|++|
T Consensus       142 ~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         142 DLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             SSSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            33    234555555554

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.92  E-value=3.1e-26  Score=167.32  Aligned_cols=120  Identities=15%  Similarity=0.225  Sum_probs=95.8

Q ss_pred             CCceecCeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHH
Q 027311           65 SKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQ  143 (225)
Q Consensus        65 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~  143 (225)
                      .|+.+|+|++.+.+|+++++++++||++||+||++||++|+.+++.|++++++|.++ ++.+++|+.|+       +.++
T Consensus         2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~-------~~~~   74 (144)
T d1o8xa_           2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE-------EEDG   74 (144)
T ss_dssp             GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCC-------SHHH
T ss_pred             CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccc-------cHHH
Confidence            467899999999999999999999999999999999999999999999999999754 79999999885       7778


Q ss_pred             HHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEE
Q 027311          144 IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVER  206 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~  206 (225)
                      ...+........+++.  .+.......+.|             ++.++|++||||++ |+|+..
T Consensus        75 ~~~~~~~~~~~~~~~~--~~d~~~~l~~~y-------------~v~~~Pt~~liD~~~G~Vi~~  123 (144)
T d1o8xa_          75 FAGYFAKMPWLAVPFA--QSEAVQKLSKHF-------------NVESIPTLIGVDADSGDVVTT  123 (144)
T ss_dssp             HHHHHTTCSSEECCGG--GHHHHHHHHHHT-------------TCCSSSEEEEEETTTCCEEES
T ss_pred             HHHHHhhccccceeee--cccchhhHHHHc-------------CCCcCCEEEEEeCCCCEEEEE
Confidence            7777644333344432  111112223333             89999999999998 898765

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.3e-25  Score=163.96  Aligned_cols=130  Identities=8%  Similarity=0.173  Sum_probs=104.2

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCcc--CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIY--KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEP  138 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~--~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~  138 (225)
                      .+++|+++|+|++.|.+|+.++|+++  +|++++++|| ++|||+|..+++.+++.+++|++. +.+++||.|       
T Consensus         4 ~L~vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~-~~~~~is~d-------   75 (156)
T d2a4va1           4 ELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY-AAVFGLSAD-------   75 (156)
T ss_dssp             CCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT-CEEEEEESC-------
T ss_pred             cCCCCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc-cceeeeccc-------
Confidence            35799999999999999999999998  5678888887 899999999999999999999754 778999987       


Q ss_pred             CCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC
Q 027311          139 GDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS  212 (225)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~  212 (225)
                       +.+.+++|+ ++++++||++  .|.++ ...+.|+....        ...+++++++|+.+|+|++++.+..+
T Consensus        76 -~~~~~~~f~-~~~~l~f~~L--~D~~~-~v~~~ygv~~~--------~~~~~~r~~~i~~dg~i~~~~~~~~~  136 (156)
T d2a4va1          76 -SVTSQKKFQ-SKQNLPYHLL--SDPKR-EFIGLLGAKKT--------PLSGSIRSHFIFVDGKLKFKRVKISP  136 (156)
T ss_dssp             -CHHHHHHHH-HHHTCSSEEE--ECTTC-HHHHHHTCBSS--------SSSCBCCEEEEEETTEEEEEEESCCH
T ss_pred             -hhhhHHhhh-cccCccceec--cchHH-HHHHHcCCCcc--------ccCCeeEEEEEEECCeEEEEEEEeCC
Confidence             789999998 8889999999  45544 35556644322        11223445666689999999887653

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.8e-25  Score=165.65  Aligned_cols=132  Identities=15%  Similarity=0.131  Sum_probs=103.6

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      .+++|+++|+|++.+.+|+.++|++++||++||.|| +.|||+|..+++.|++++.+++  ++++++||.|        +
T Consensus        17 ~~~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d--------~   86 (164)
T d1qxha_          17 IPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISAD--------L   86 (164)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESS--------C
T ss_pred             cCCCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcC--------C
Confidence            358999999999999999999999999999999888 7799999999999999988764  5999999998        7


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                      .+..++|. +++++.++++.+.|.++ ...+.|+..... +...  ++ ..|++||||++|+|++++..
T Consensus        87 ~~~~~~~~-~~~~~~~~~~~~~d~~~-~~~~~ygv~~~~-~~~~--g~-~~ra~fvID~~G~I~y~~~~  149 (164)
T d1qxha_          87 PFAQSRFC-GAEGLNNVITLSTFRNA-EFLQAYGVAIAD-GPLK--GL-AARAVVVIDENDNVIFSQLV  149 (164)
T ss_dssp             HHHHTTCC-SSTTCTTEEEEECTTCH-HHHHHTTCBBCS-STTT--TS-BCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHHH-HHhCCCcceeeccccch-hhHHhcCeEeec-Cccc--Cc-ccCEEEEEcCCCEEEEEEEc
Confidence            88888887 77889999875444332 233445432211 1111  22 24789999999999988654

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.91  E-value=3.5e-25  Score=161.70  Aligned_cols=113  Identities=17%  Similarity=0.254  Sum_probs=89.0

Q ss_pred             CeEEeCCCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcC-CeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 027311           71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQ-GLEILAFPCNQFGAQEPGDNEQIQEFAC  149 (225)
Q Consensus        71 ~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~-~~~iv~Is~d~~~~~~~~~~~~~~~~~~  149 (225)
                      .+.+.+.+|+++++++++||+++|+|||+||++|+.++|.|++++++++++ +++|++|+.|.       +.+++.+++ 
T Consensus        10 ~~~~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~-------~~~~~~~~~-   81 (144)
T d1i5ga_          10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE-------SAEDFKDYY-   81 (144)
T ss_dssp             CSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS-------SHHHHHHHH-
T ss_pred             chhhccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccc-------cHHHHHHHH-
Confidence            456777788999999999999999999999999999999999999999864 69999999986       788888888 


Q ss_pred             hhcCCCcceeeeecCCCC-CchhhhhhccccCCCCCCCccccceeEEEECCC-CcEEEE
Q 027311          150 TRFKAEFPIFDKVDVNGD-NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE-GNVVER  206 (225)
Q Consensus       150 ~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G~I~~~  206 (225)
                      ++.+..++.+  .|..+. ...+.|             ++.++|+++|||++ |+|+..
T Consensus        82 ~~~~~~~~~~--~d~~~~~~l~~~y-------------~v~~iPt~~lid~~~G~vi~~  125 (144)
T d1i5ga_          82 AKMPWLALPF--EDRKGMEFLTTGF-------------DVKSIPTLVGVEADSGNIITT  125 (144)
T ss_dssp             TTCSSEECCT--TCHHHHHHHHHHT-------------TCCSSSEEEEEETTTCCEEES
T ss_pred             HhCCCCceee--EChHHHHHHHHHC-------------CCCCcCEEEEEeCCCCEEEee
Confidence            5555433322  111111 122223             89999999999997 899754

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-24  Score=164.41  Aligned_cols=143  Identities=17%  Similarity=0.218  Sum_probs=113.8

Q ss_pred             ccCCCceecCeEEe---CCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCC
Q 027311           62 ASQSKTSVHDFSVK---DAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQE  137 (225)
Q Consensus        62 ~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~  137 (225)
                      .+++|+++|+|+++   +.+|+.++|++++||++||+|| +.||+.|..|+..+++.+++|++.|++|++||.|      
T Consensus         4 ~~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D------   77 (197)
T d1qmva_           4 NARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVD------   77 (197)
T ss_dssp             TBCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             CCcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecC------
Confidence            34899999999875   5678899999999999999999 9999999999999999999999999999999998      


Q ss_pred             CCCHHHHHHHHHhh-------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          138 PGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       138 ~~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                        +....++|. ++       .+++||++.  |..+ ...+.|+.+....      + ...+++||||++|+|++.....
T Consensus        78 --~~~~~~~~~-~~~~~~~~~~~~~fpll~--D~~~-~va~~ygv~~~~~------g-~~~R~tfiID~~g~Ir~~~~~~  144 (197)
T d1qmva_          78 --SQFTHLAWI-NTPRKEGGLGPLNIPLLA--DVTR-RLSEDYGVLKTDE------G-IAYRGLFIIDGKGVLRQITVND  144 (197)
T ss_dssp             --CHHHHHHHH-TSCGGGTCCCSCSSCEEE--CTTC-HHHHHTTCEETTT------T-EECEEEEEECTTSBEEEEEEEC
T ss_pred             --CHHHHHhhh-cchhhhcCcCCCccceEe--ccch-HHHHHhCCCcccC------C-eeeEEEEEECCCCcEEEEEecC
Confidence              788888887 43       268999994  5443 3556676543321      2 2468999999999999975544


Q ss_pred             C----ChhhHHHHHHhh
Q 027311          211 T----SPLSIEVVLECL  223 (225)
Q Consensus       211 ~----~~~~l~~~l~~l  223 (225)
                      .    +.+++.+.|++|
T Consensus       145 ~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         145 LPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             TTBCCCHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHhh
Confidence            3    345666666655

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.91  E-value=4.1e-24  Score=159.23  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=101.4

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      .+++|+++|+|++.+.+|+.++|++++||++||.|| +.|||.|..+++.+++.+++++  ++.+++||.|        +
T Consensus        15 ~p~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d--------~   84 (164)
T d1q98a_          15 FPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISAD--------L   84 (164)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESS--------C
T ss_pred             CCCCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCC--------c
Confidence            458999999999999999999999999999999999 6688899999999999999995  5999999998        7


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCC
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAP  209 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g  209 (225)
                      .+..++|. +++++.+..+. .+.........|...... +...  ++ ..|++||||++|+|++.+..
T Consensus        85 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~-~~~~--g~-~~Ra~fvID~~G~I~y~~~~  147 (164)
T d1q98a_          85 PFAQARFC-GAEGIENAKTV-STFRNHALHSQLGVDIQT-GPLA--GL-TSRAVIVLDEQNNVLHSQLV  147 (164)
T ss_dssp             HHHHTTCT-TTTTCTTEEEE-ECTTCTHHHHHTTCEECS-STTT--TS-BCCEEEEECTTSBEEEEEEC
T ss_pred             HHHHHHHH-HHhCCcccccc-ccccchhHHHhhceeccc-Cccc--cC-cccEEEEECCCCEEEEEEEC
Confidence            88888887 67787755442 222233344444332211 1111  22 24899999999999998654

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=4.7e-24  Score=159.29  Aligned_cols=129  Identities=10%  Similarity=0.084  Sum_probs=92.8

Q ss_pred             ccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCC
Q 027311           62 ASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGD  140 (225)
Q Consensus        62 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~  140 (225)
                      .+++|+++|+|++.+.+|++++|++++||++||+|| +.|||.|..+++.+++.   +.+.|++|++||.|        +
T Consensus        16 ~p~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~g~~vv~Is~d--------~   84 (166)
T d1xvqa_          16 LPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER---AAASGATVLCVSKD--------L   84 (166)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH---HHHTTCEEEEEESS--------C
T ss_pred             CCCCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhh---cccccccccccccc--------h
Confidence            458999999999999999999999999999999999 55999999998877654   55667999999998        6


Q ss_pred             HHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311          141 NEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~  208 (225)
                      ....++|. ++++..++.+.  +.......+.|+...... ...  +. ..|++||||++|+|++.+.
T Consensus        85 ~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~-~~~--g~-~~ra~fvID~~G~I~y~~~  145 (166)
T d1xvqa_          85 PFAQKRFC-GAEGTENVMPA--SAFRDSFGEDYGVTIADG-PMA--GL-LARAIVVIGADGNVAYTEL  145 (166)
T ss_dssp             HHHHTTCC-------CEEEE--ECTTSSHHHHTTCBBCSS-TTT--TS-BCSEEEEECTTSBEEEEEE
T ss_pred             HHHHHHHH-HHhCCcccccc--cchhHHHHHHhCeeeccC-ccc--Cc-eeeEEEEEeCCCEEEEEEE
Confidence            77888887 66777777652  333344444554332211 111  11 2478999999999998754

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.91  E-value=6.1e-24  Score=158.20  Aligned_cols=143  Identities=11%  Similarity=0.071  Sum_probs=105.7

Q ss_pred             cccCCCceecCeEEeCCCCCeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           61 MASQSKTSVHDFSVKDAKGQDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        61 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+++|+++|+|++.+.+|++++|++++||++||.|| +.|||.|..+++.+++.+++++  ++.+++||.|        
T Consensus        14 ~~l~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d--------   83 (163)
T d1psqa_          14 KQLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMD--------   83 (163)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESS--------
T ss_pred             CCCCCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEec--------
Confidence            4568999999999999999999999999999999998 7799999999999999888874  5999999988        


Q ss_pred             CHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC-----Chh
Q 027311          140 DNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-----SPL  214 (225)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~-----~~~  214 (225)
                      +....++|. ++++..++.+. .+.......+.|+......      ++ ..+++||||++|+|++.+....     +.+
T Consensus        84 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ygv~~~~~------~~-~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~  154 (163)
T d1psqa_          84 LPFAQKRWC-GAEGLDNAIML-SDYFDHSFGRDYALLINEW------HL-LARAVFVLDTDNTIRYVEYVDNINSEPNFE  154 (163)
T ss_dssp             CHHHHHHHH-HHHTCTTSEEE-ECTTTCHHHHHHTCBCTTT------CS-BCCEEEEECTTCBEEEEEECSBTTSCCCHH
T ss_pred             cHHHHHHHH-HHcCCcceeee-ccccchhHHHhheeecccc------cc-eeEEEEEECCCCEEEEEEEcCCCCCCCCHH
Confidence            778888887 56666665543 2322334555564432211      11 1347899999999998754321     224


Q ss_pred             hHHHHHHh
Q 027311          215 SIEVVLEC  222 (225)
Q Consensus       215 ~l~~~l~~  222 (225)
                      ++.+.|++
T Consensus       155 ~il~alk~  162 (163)
T d1psqa_         155 AAIAAAKA  162 (163)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            55555554

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.5e-24  Score=157.27  Aligned_cols=150  Identities=16%  Similarity=0.220  Sum_probs=111.7

Q ss_pred             CeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhcCC----eEEEEEecCCCCCCCCCCHHHHH
Q 027311           71 DFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKNQG----LEILAFPCNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        71 ~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~~~----~~iv~Is~d~~~~~~~~~~~~~~  145 (225)
                      ||+++|++|+++++++++||++||+||+|||| .|...++.+++++++++..+    +.++.++.+    ++.++.+...
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   77 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID----PERDTKEAIA   77 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESC----TTTCCHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccC----CCcccHHHHH
Confidence            69999999999999999999999999999998 79999999999999886543    566667765    4556778888


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhccc-cC-CCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS-SK-GGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      ++. ..++.++..+.............|..... .. +...++.+.+.+++|||||+|+|++++.+..+++++.+.|+++
T Consensus        78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~  156 (160)
T d1wp0a1          78 NYV-KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH  156 (160)
T ss_dssp             HHH-HTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred             HHH-hhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            777 67777777663211111112222221111 11 1111246788899999999999999998888899999999998


Q ss_pred             hC
Q 027311          224 CC  225 (225)
Q Consensus       224 l~  225 (225)
                      |+
T Consensus       157 lk  158 (160)
T d1wp0a1         157 MR  158 (160)
T ss_dssp             HT
T ss_pred             Hh
Confidence            85

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.90  E-value=1e-23  Score=159.49  Aligned_cols=141  Identities=11%  Similarity=0.219  Sum_probs=110.5

Q ss_pred             CCCceecCeEEeCC-CC--CeecCCccCCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDA-KG--QDVDLSIYKGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~l~~~-~G--~~~~l~~~~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      .+|+++|+|++.+. +|  ++++|++++||++||+|| +.|||.|..|++.+++.++++++.|+++++||.|        
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~D--------   73 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTD--------   73 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEecccc--------
Confidence            47999999998764 55  478999999999999999 8899999999999999999999999999999998        


Q ss_pred             CHHHHHHHHHhhc----CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----
Q 027311          140 DNEQIQEFACTRF----KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----  211 (225)
Q Consensus       140 ~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----  211 (225)
                      +.+..++|+ +++    +++||+++  |.++. ..+.|+......      + ...|++||||++|+|++.+....    
T Consensus        74 s~~sh~~f~-~~~~~~~~~~fplls--D~~~~-v~~~yGv~~~~~------g-~~~r~tfiID~~G~Ir~~~v~~~~~~r  142 (186)
T d1n8ja_          74 THFTHKAWH-SSSETIAKIKYAMIG--DPTGA-LTRNFDNMREDE------G-LADRATFVVDPQGIIQAIEVTAEGIGR  142 (186)
T ss_dssp             CHHHHHHHH-HHCTTGGGCCSEEEE--CTTSH-HHHHTTCEETTT------T-EECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred             CHHHHHHHh-ccccccccccccccc--cHHHH-HHHHhCCCcccC------C-cceeeEEEECchheEEEEeecCCCccc
Confidence            888888898 554    38899984  54443 455665443221      1 23589999999999998865433    


Q ss_pred             ChhhHHHHHHhh
Q 027311          212 SPLSIEVVLECL  223 (225)
Q Consensus       212 ~~~~l~~~l~~l  223 (225)
                      +.+++.+.|++|
T Consensus       143 ~~~eiL~~lkaL  154 (186)
T d1n8ja_         143 DASDLLRKIKAA  154 (186)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            345666666654

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=163.16  Aligned_cols=147  Identities=14%  Similarity=0.161  Sum_probs=114.0

Q ss_pred             CCCceecCeEEeCCCCCeecCCccCC-CEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIYKG-KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~~g-k~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      .+|+++|+|++.+.+|+ ++|++++| |++|++|| +.|||.|..|+..+++.+++++++|+++++||+|        +.
T Consensus         2 ~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~D--------s~   72 (220)
T d1prxa_           2 LLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSID--------SV   72 (220)
T ss_dssp             CTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------CH
T ss_pred             CCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccc--------cc
Confidence            58999999999999996 99999987 79999888 8899999999999999999999999999999998        67


Q ss_pred             HHHHHHHHh---------hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC-
Q 027311          142 EQIQEFACT---------RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-  211 (225)
Q Consensus       142 ~~~~~~~~~---------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~-  211 (225)
                      +...+|...         ..+++||+++  |.+ ....+.|+.+........+.+ -..+++||||++|+|++...... 
T Consensus        73 ~sh~~~~~~~~~~~~~~~~~~l~fplls--D~~-~~va~~ygv~~~~~~~~~~~~-~~~RatFIID~~g~Ir~~~~~~~~  148 (220)
T d1prxa_          73 EDHLAWSKDINAYNSEEPTEKLPFPIID--DRN-RELAILLGMLDPAEKDEKGMP-VTARVVFVFGPDKKLKLSILYPAT  148 (220)
T ss_dssp             HHHHHHHHHHHHHTTSCCCSCCSSCEEE--CTT-CHHHHHTTSSCSCTTCSSSCC-TTCCEEEEECTTSBEEEEEECCTT
T ss_pred             cchhhhhhhhhhccccccccCccccccc--Ccc-cHHHHHhCCccccccccccce-eeeEEEEEEcCccceeEEEEecCC
Confidence            777776522         1358899984  544 445667877655433222211 24679999999999999865433 


Q ss_pred             ---ChhhHHHHHHhh
Q 027311          212 ---SPLSIEVVLECL  223 (225)
Q Consensus       212 ---~~~~l~~~l~~l  223 (225)
                         +.+++.+.|++|
T Consensus       149 ~gR~~dEiLr~l~al  163 (220)
T d1prxa_         149 TGRNFDEILRVVISL  163 (220)
T ss_dssp             BCCCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHH
Confidence               455666666655

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.90  E-value=1.3e-23  Score=164.11  Aligned_cols=142  Identities=15%  Similarity=0.246  Sum_probs=108.3

Q ss_pred             CCCceecCeEEeCCCCCeecCCcc---CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKGQDVDLSIY---KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G~~~~l~~~---~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      .+|+++|+|++.+.+|+ ++++++   +||++||+|| ++|||+|..|++.+++.+++|+++|+++++||+|        
T Consensus         2 lIGd~aPdF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~D--------   72 (237)
T d2zcta1           2 LIGERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVD--------   72 (237)
T ss_dssp             CTTSBCCCEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCCCCCeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCC--------
Confidence            48999999999999995 777774   8999999988 9999999999999999999999999999999998        


Q ss_pred             CHHHHHHHHHh-----hcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC---
Q 027311          140 DNEQIQEFACT-----RFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT---  211 (225)
Q Consensus       140 ~~~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~---  211 (225)
                      +.+..++|...     ..+++||++.  |.++ ...+.|+.+....      +....|++||||++|+|++......   
T Consensus        73 s~~sh~~w~~~~~~~~~~~l~fplls--D~~~-~vak~yGv~~~~~------~~~~~RatFIIDpdG~Ir~~~~~~~~~g  143 (237)
T d2zcta1          73 SVFSHIKWKEWIERHIGVRIPFPIIA--DPQG-TVARRLGLLHAES------ATHTVRGVFIVDARGVIRTMLYYPMELG  143 (237)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCSCEEE--CGGG-HHHHHTTCC----------CCTTCCEEEEECTTSBEEEEEECCTTBC
T ss_pred             cHHHHHHHhhhhhhhccccccccccc--Ccch-HHHHHcCCccccc------cccceeeeEEECCCCEEEEEEEeCCCCC
Confidence            66666666421     3678999984  4443 3445565433221      2245789999999999998865433   


Q ss_pred             -ChhhHHHHHHhh
Q 027311          212 -SPLSIEVVLECL  223 (225)
Q Consensus       212 -~~~~l~~~l~~l  223 (225)
                       +.+++.+.|++|
T Consensus       144 R~~dEiLr~l~aL  156 (237)
T d2zcta1         144 RLVDEILRIVKAL  156 (237)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence             345666666654

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.88  E-value=2.3e-22  Score=150.45  Aligned_cols=136  Identities=18%  Similarity=0.192  Sum_probs=105.2

Q ss_pred             eecCeEEeC----CCCCeecCCccCC-CEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCH
Q 027311           68 SVHDFSVKD----AKGQDVDLSIYKG-KLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDN  141 (225)
Q Consensus        68 ~~p~f~l~~----~~G~~~~l~~~~g-k~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~  141 (225)
                      ++|+|++.+    .+|++++|+|++| |++||.|| +.|||.|..|++.+++.++++++.|++|++||.|        +.
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D--------~~   72 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVD--------SK   72 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESS--------CH
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCC--------cH
Confidence            489999984    5566899999998 78999998 8999999999999999999999999999999998        78


Q ss_pred             HHHHHHHHhh-------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCC--
Q 027311          142 EQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTS--  212 (225)
Q Consensus       142 ~~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~--  212 (225)
                      ...++|. ++       .+.+||++.  |.++. ..+.|+.+..        .....+++||||++|+|++.+.+...  
T Consensus        73 ~~~~~~~-~~~~~~~~~~~~~f~lls--D~~~~-~~~~ygv~~~--------~~~~~R~tfiId~~G~I~~~~~~~~~~~  140 (170)
T d2h01a1          73 FTHLAWK-KTPLSQGGIGNIKHTLIS--DISKS-IARSYDVLFN--------ESVALRAFVLIDKQGVVQHLLVNNLALG  140 (170)
T ss_dssp             HHHHHHH-TSCGGGTCCCSCSSEEEE--CTTSH-HHHHTTCEET--------TTEECCEEEEECTTSBEEEEEEGGGSSG
T ss_pred             HHHHhHh-hhhhhhccccccCCceeE--cCccH-HHHHhCCccc--------cccceeeeEEEcCCCeEEEEEEecCCCC
Confidence            8888886 44       347888884  44433 4455654322        12345799999999999998754432  


Q ss_pred             --hhhHHHHHHhh
Q 027311          213 --PLSIEVVLECL  223 (225)
Q Consensus       213 --~~~l~~~l~~l  223 (225)
                        .+++.+.|++|
T Consensus       141 ~~~~eil~~l~~l  153 (170)
T d2h01a1         141 RSVDEILRLIDAL  153 (170)
T ss_dssp             GGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence              34566666654

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.88  E-value=1.6e-22  Score=156.22  Aligned_cols=149  Identities=17%  Similarity=0.236  Sum_probs=114.1

Q ss_pred             cCCCceecCeEEeCCCCC-eecCCcc-CCCEEEEEEc-ccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCC
Q 027311           63 SQSKTSVHDFSVKDAKGQ-DVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPG  139 (225)
Q Consensus        63 ~~~g~~~p~f~l~~~~G~-~~~l~~~-~gk~vlv~F~-~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~  139 (225)
                      ..+|+++|+|++.+.+|+ +++++++ +||++||+|| +.|||.|..|+..+++.+++++++|+++++||+|        
T Consensus         2 i~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~D--------   73 (219)
T d1xcca_           2 YHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCN--------   73 (219)
T ss_dssp             CCTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESS--------
T ss_pred             CcCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCc--------
Confidence            479999999999977543 6999996 8999999999 8899999999999999999999999999999998        


Q ss_pred             CHHHHHHHHHhh------cCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC--
Q 027311          140 DNEQIQEFACTR------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT--  211 (225)
Q Consensus       140 ~~~~~~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~--  211 (225)
                      +.+..++|..+.      .+++||+++  |.++ ...+.|+.+....+...+.+ ....++||||++|+|++......  
T Consensus        74 s~~sh~~w~~~~~~~~~~~~l~fplls--D~~~-~va~~ygv~~~~~~~~~~~~-~~~R~tFiIDp~g~Ir~~~~~~~~~  149 (219)
T d1xcca_          74 SKESHDKWIEDIKYYGKLNKWEIPIVC--DESR-ELANKLKIMDEQEKDITGLP-LTCRCLFFISPEKKIKATVLYPATT  149 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTCSCCCCCEEE--CTTS-HHHHHHTCEEEEEECTTSCE-EECEEEEEECTTSBEEEEEEECTTB
T ss_pred             cHhHHhHHhhhhHhhcccCCCCccccc--cccc-HHHHHhCCcccccccCcccc-eeeeeeEEEcCcceEEEEEEeCCCc
Confidence            788888887332      378999994  4444 35567777655433222211 12468999999999987744322  


Q ss_pred             --ChhhHHHHHHhh
Q 027311          212 --SPLSIEVVLECL  223 (225)
Q Consensus       212 --~~~~l~~~l~~l  223 (225)
                        +.+++.+.|++|
T Consensus       150 gr~~~EiLr~l~aL  163 (219)
T d1xcca_         150 GRNAHEILRVLKSL  163 (219)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHH
Confidence              446676666655

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.8e-21  Score=144.12  Aligned_cols=150  Identities=16%  Similarity=0.194  Sum_probs=96.6

Q ss_pred             cCeEEeCCCCCeecCCccCCCEEEEEEcccCCC-CChHhHHHHHHHHHHHhc---CCeEEEEEecCCCCCCCCCCHHHHH
Q 027311           70 HDFSVKDAKGQDVDLSIYKGKLLLIVNVASQCG-LTNSNYTELSQLYDKYKN---QGLEILAFPCNQFGAQEPGDNEQIQ  145 (225)
Q Consensus        70 p~f~l~~~~G~~~~l~~~~gk~vlv~F~~twC~-~C~~~~~~l~~l~~~~~~---~~~~iv~Is~d~~~~~~~~~~~~~~  145 (225)
                      +||+++|++|+++++++++||++||+||++||+ .|......+..++..+..   ..+.++.++.+    +..++.+...
T Consensus         7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   82 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD----PARDSPAVLK   82 (169)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC----TTTCCHHHHH
T ss_pred             CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccc----cccCchhhhh
Confidence            589999999999999999999999999999998 677777777776666543   34667777665    3444556656


Q ss_pred             HHHHhhcCCCcceeeeecCCCCCchhhhhhccc---cCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhh----HHH
Q 027311          146 EFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS---SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLS----IEV  218 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~----l~~  218 (225)
                      .+. ...+..+................+.....   ......++.+.+.|++||||++|+|+.++.+..+++.    +.+
T Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e  161 (169)
T d2b7ka1          83 EYL-SDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVE  161 (169)
T ss_dssp             HHH-TTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHH
T ss_pred             hhh-ccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHH
Confidence            554 44455554442111100111111111111   1112234578899999999999999999988877765    556


Q ss_pred             HHHhhh
Q 027311          219 VLECLC  224 (225)
Q Consensus       219 ~l~~ll  224 (225)
                      .|++||
T Consensus       162 ~ik~ll  167 (169)
T d2b7ka1         162 HVKSYV  167 (169)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            666554

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.68  E-value=1.3e-16  Score=109.76  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=76.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|++||+||++||++|....|.+.++.+++.++ +.++.|++|.       .. ++.    +                 
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~d~-------~~-~l~----~-----------------   67 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDE-------SP-NVA----S-----------------   67 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-HHH----H-----------------
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhccc-ceEEEEeccc-------ch-hHH----H-----------------
Confidence            4789999999999999999999999999998866 8899998873       22 221    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             +|.++|+++++ ++|+.+.++.|..+.+++.+.|++.||
T Consensus        68 ----~~-------------~V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          68 ----EY-------------GIRSIPTIMVF-KGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             ----HH-------------TCCSSCEEEEE-SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             ----Hh-------------cccceEEEEEE-ECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence                12             78889999999 589999999999999999999999987

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.66  E-value=1.1e-16  Score=109.76  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=76.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|+++|+||++||++|+...|.+.++.++++++ +.++.|++|.       .. .+.    ++                
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~vd~~~-------~~-~~~----~~----------------   66 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDE-------NP-ETT----SQ----------------   66 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTT-------CH-HHH----HH----------------
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc-eEEEEEECCC-------Cc-ccH----HH----------------
Confidence            4689999999999999999999999999999875 9999999873       22 221    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                           |             +|.++|+++++ ++|+.+.++.|..+.+++++.|+++|+
T Consensus        67 -----~-------------~V~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~L~  105 (105)
T d1nw2a_          67 -----F-------------GIMSIPTLILF-KGGEPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             -----T-------------TCCBSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTCC
T ss_pred             -----C-------------CcceeeEEEEE-ECCEEEEEEECCCCHHHHHHHHHHHhC
Confidence                 2             78889998888 689999999999999999999999874

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.66  E-value=3.3e-16  Score=107.83  Aligned_cols=89  Identities=13%  Similarity=0.160  Sum_probs=75.6

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +|+++|.||++||++|+...|.+.++.+++++. +.++.|++|.       +. ++.    ++                 
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~d~-------~~-~l~----~~-----------------   69 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP-------NP-TTV----KK-----------------   69 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTT-------CH-HHH----HH-----------------
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhcCCc-ceeceecccc-------cH-HHH----HH-----------------
Confidence            579999999999999999999999999999876 8999999873       22 211    11                 


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          |             +|.++|++++++ +|+.+.++.|..+.+++.+.|++.||
T Consensus        70 ----~-------------~I~~~Pt~~~~~-~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          70 ----Y-------------KVEGVPALRLVK-GEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             ----T-------------TCCSSSEEEEEE-TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ----h-------------cccCCCEEEEEE-CCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence                2             778899999995 89999999999999999999999886

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-16  Score=115.64  Aligned_cols=133  Identities=16%  Similarity=0.140  Sum_probs=93.1

Q ss_pred             cCCCceecCeEEeC-CCCCeecCCcc-CCCEEEEEEc-ccCCCCCh-HhHHHHHHHHHHHhcCCe-EEEEEecCCCCCCC
Q 027311           63 SQSKTSVHDFSVKD-AKGQDVDLSIY-KGKLLLIVNV-ASQCGLTN-SNYTELSQLYDKYKNQGL-EILAFPCNQFGAQE  137 (225)
Q Consensus        63 ~~~g~~~p~f~l~~-~~G~~~~l~~~-~gk~vlv~F~-~twC~~C~-~~~~~l~~l~~~~~~~~~-~iv~Is~d~~~~~~  137 (225)
                      +++|+.+|+|++.+ .+|+.++++++ +||++||.|+ +.|||.|. .+++.+.+.++++.++|. .|+++++|      
T Consensus         3 ikVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~------   76 (161)
T d1hd2a_           3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN------   76 (161)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS------
T ss_pred             CCCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecC------
Confidence            57999999999975 56899999995 8999999888 88999995 588899999999998886 56678887      


Q ss_pred             CCCHHHHHHHHHhhcCC--CcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311          138 PGDNEQIQEFACTRFKA--EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       138 ~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~  208 (225)
                        +....++|. +..+.  .++++  .|..+. ..+.|+.+....+...+.+.++ -++++|+++|+|++.+.
T Consensus        77 --~~~~~~~~~-~~~~~~~~~~ll--sD~~~~-~a~~~g~~~~~~~~g~~~~~~s-~r~~~I~~~G~I~~~~v  142 (161)
T d1hd2a_          77 --DAFVTGEWG-RAHKAEGKVRLL--ADPTGA-FGKETDLLLDDSLVSIFGNRRL-KRFSMVVQDGIVKALNV  142 (161)
T ss_dssp             --CHHHHHHHH-HHTTCTTTCEEE--ECTTCH-HHHHHTCBCCSTTHHHHSSCCB-CCEEEEEETTEEEEEEE
T ss_pred             --chhhhhhhh-hhcccccccccc--cCCcce-eeeeeeeeeccccCccccccEE-eEEEEEECCCEEEEEEE
Confidence              667777776 44444  46667  454444 4455654432221101002221 24466667999998865

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=5.1e-17  Score=112.59  Aligned_cols=91  Identities=22%  Similarity=0.351  Sum_probs=72.8

Q ss_pred             cCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311           83 DLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus        83 ~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .+++..||++||+||++||++|+...|.++++.+++++. +.++.|..|+       ..+ +.    ++           
T Consensus        19 ~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~i~~d~-------~~~-l~----~~-----------   74 (111)
T d1xwaa_          19 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDVDE-------CED-IA----ME-----------   74 (111)
T ss_dssp             HHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CHH-HH----HH-----------
T ss_pred             HHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc-eEEEEEEeec-------Ccc-hh----hc-----------
Confidence            355567999999999999999999999999999999865 8888898773       222 21    11           


Q ss_pred             cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                                |             +|.++|+++++ ++|+++.++.|. .++++++.|++
T Consensus        75 ----------~-------------~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~I~~  109 (111)
T d1xwaa_          75 ----------Y-------------NISSMPTFVFL-KNGVKVEEFAGA-NAKRLEDVIKA  109 (111)
T ss_dssp             ----------T-------------TCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHH
T ss_pred             ----------C-------------CCccccEEEEE-ECCEEEEEEeCC-CHHHHHHHHHh
Confidence                      2             77889998888 799999999986 45678888775

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.62  E-value=6.1e-16  Score=105.74  Aligned_cols=89  Identities=15%  Similarity=0.204  Sum_probs=74.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|+++|.||++||++|+...|.+.++.+++.++ +.++.|+.|.       +. ++.    ++                
T Consensus        16 ~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~d~-------~~-~l~----~~----------------   66 (104)
T d1fb6a_          16 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDE-------AP-GIA----TQ----------------   66 (104)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-HHH----HH----------------
T ss_pred             CCCcEEEEEEcCccCCccccCchhHHHHHhhcCc-cceeEEeccc-------ch-hhh----hh----------------
Confidence            3679999999999999999999999999999876 7888888773       22 211    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           |             +|.++||++++ ++|+.+.++.|..+.+++.+.|++.|
T Consensus        67 -----~-------------~V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          67 -----Y-------------NIRSIPTVLFF-KNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             -----T-------------TCCSSSEEEEE-ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             -----c-------------ceeeeeEEEEE-EcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence                 2             78889998877 79999999999999999999999875

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=8.9e-16  Score=105.61  Aligned_cols=89  Identities=21%  Similarity=0.265  Sum_probs=73.7

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|+++|+||++||++|+...|.+.++..++..+ +.++.+.+|.       +.. +                       
T Consensus        19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~vd~d~-------~~~-l-----------------------   66 (108)
T d2trxa_          19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NPG-T-----------------------   66 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CTT-H-----------------------
T ss_pred             CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc-eeeeeccccc-------hhh-H-----------------------
Confidence            3689999999999999999999999999988765 8888888763       111 1                       


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                        ...|             ++.++||++++ ++|+++.++.|..+.+++.+.|++.|
T Consensus        67 --~~~~-------------~v~~~PT~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          67 --APKY-------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             --HHHT-------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             --HHHh-------------CCCcEEEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence              1112             78889987777 78999999999999999999999876

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.61  E-value=1.6e-15  Score=111.95  Aligned_cols=134  Identities=14%  Similarity=0.095  Sum_probs=94.4

Q ss_pred             ccCCCceecCeEEe----CCCCCeecCCcc-CCCEEEEEEc-ccCCCCChH-hHHHHHHHHHHHhcCC-eEEEEEecCCC
Q 027311           62 ASQSKTSVHDFSVK----DAKGQDVDLSIY-KGKLLLIVNV-ASQCGLTNS-NYTELSQLYDKYKNQG-LEILAFPCNQF  133 (225)
Q Consensus        62 ~~~~g~~~p~f~l~----~~~G~~~~l~~~-~gk~vlv~F~-~twC~~C~~-~~~~l~~l~~~~~~~~-~~iv~Is~d~~  133 (225)
                      .+++|+++|+|++.    +.++++++++++ +||++||.|+ +.|+|.|.. .++...+..+++..++ .++++||+|  
T Consensus         3 ~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd--   80 (162)
T d1tp9a1           3 PIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN--   80 (162)
T ss_dssp             CCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS--
T ss_pred             CCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeecc--
Confidence            35899999999996    445678999984 9999999888 889999964 5667777788877776 578899998  


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC
Q 027311          134 GAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA  208 (225)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~  208 (225)
                            +....++|. ...+...++....|..+. ..+.|+.+....+...  +....-.+|||| +|+|++.+.
T Consensus        81 ------~~~~~~~~~-~~~~~~~~~~~lsD~~~~-~~~~~g~~~~~~~~g~--g~~~~R~tfiId-dg~I~~~~v  144 (162)
T d1tp9a1          81 ------DPFVMKAWA-KSYPENKHVKFLADGSAT-YTHALGLELDLQEKGL--GTRSRRFALLVD-DLKVKAANI  144 (162)
T ss_dssp             ------CHHHHHHHH-HTCTTCSSEEEEECTTSH-HHHHTTCEEEETTTTS--EEEECCEEEEEE-TTEEEEEEE
T ss_pred             ------chhhhhhhh-hhcccccccccccchhhH-HHhhhhhccccccccC--CcEEEEEEEEEE-CCEEEEEEE
Confidence                  788888887 665655433332555544 3444554432222111  233345789999 899999865

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.5e-16  Score=111.13  Aligned_cols=98  Identities=13%  Similarity=0.060  Sum_probs=71.0

Q ss_pred             eecCCccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 027311           81 DVDLSIYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFP  157 (225)
Q Consensus        81 ~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (225)
                      ...+++.+||+++|+||++||++|+...|.+   .++.+.+.  ++.++.+.++.       +.+...+++ ++      
T Consensus        14 ~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~-------~~~~~~~l~-~~------   77 (117)
T d2fwha1          14 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTA-------NDAQDVALL-KH------   77 (117)
T ss_dssp             HHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTT-------CCHHHHHHH-HH------
T ss_pred             HHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--ceEEEeccccc-------chhHHHHHH-hh------
Confidence            3445666899999999999999999998887   45555443  36666666542       223333332 21      


Q ss_pred             eeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEE--EcCCCCChhhHHHHHHh
Q 027311          158 IFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE--RYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       158 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~--~~~g~~~~~~l~~~l~~  222 (225)
                                     |             +|.++|+++++|++|+++.  +..|..+++++.+.|+.
T Consensus        78 ---------------~-------------~v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          78 ---------------L-------------NVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             ---------------T-------------TCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             ---------------h-------------ehhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence                           2             7888999999999999874  56788899999888864

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=104.41  Aligned_cols=87  Identities=18%  Similarity=0.270  Sum_probs=71.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++|++||+|||+||++|+...|.+.++.+++++  +.++.|..|.       +.+ +.    ++                
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~d~-------~~~-~~----~~----------------   68 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDD-------CQD-VA----SE----------------   68 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------CHH-HH----HH----------------
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhcccccc--ceeeeccccc-------CHh-HH----HH----------------
Confidence            468999999999999999999999999998864  6788888763       222 11    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           |             +|.++||.+++ ++|+.+.++.|. +++++++.|+++|
T Consensus        69 -----~-------------~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          69 -----C-------------EVKCMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             -----T-------------TCCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             -----c-------------CceEEEEEEEE-ECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence                 2             78889998888 899999999995 6889999999876

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.58  E-value=6.3e-15  Score=101.03  Aligned_cols=94  Identities=7%  Similarity=-0.042  Sum_probs=71.4

Q ss_pred             CccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc---CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311           85 SIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN---QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK  161 (225)
Q Consensus        85 ~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~---~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
                      .+..++++|+.||++||++|+...|.+.++..+...   ..+.+..|+.+.       .. ++   + +           
T Consensus        11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~-------~~-~l---~-~-----------   67 (107)
T d1a8la2          11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-------YP-EW---A-D-----------   67 (107)
T ss_dssp             TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-------CH-HH---H-H-----------
T ss_pred             HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc-------cc-cc---c-c-----------
Confidence            444566778889999999999999999999876442   236777776552       11 11   1 1           


Q ss_pred             ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                .|             +|.++||+ ++.++|+++.++.|..+.+++.+.|+++||
T Consensus        68 ----------~~-------------~V~~vPTi-~i~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          68 ----------QY-------------NVMAVPKI-VIQVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             ----------HT-------------TCCSSCEE-EEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ----------cc-------------ccccceEE-EEEeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence                      12             78889975 566999999999999999999999999886

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=4.7e-15  Score=102.94  Aligned_cols=87  Identities=15%  Similarity=0.192  Sum_probs=71.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++++||+||++||++|+...|.++++.+++++  +.++.|..|.       . .++.    +                 
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~~~-------~-~~l~----~-----------------   75 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN--VLFLKVDTDE-------L-KSVA----S-----------------   75 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS--EEEEEEETTT-------S-HHHH----H-----------------
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhcccccc--cceeEEEeee-------c-eeec----c-----------------
Confidence            478999999999999999999999999998864  8888888763       2 2111    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             +|+++|+++++ ++|+++.++.|. +++++++.|++.|
T Consensus        76 ----~~-------------~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          76 ----DW-------------AIQAMPTFMFL-KEGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             ----cc-------------ceeeeEEEEEE-ECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence                12             78889998888 899999999985 6889999998865

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.9e-15  Score=102.18  Aligned_cols=88  Identities=13%  Similarity=0.150  Sum_probs=72.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|+++|+||++||++|+...|.++++.+++++  +.++.|.+|.        ..++.    +                 
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~--~~f~~vd~d~--------~~~l~----~-----------------   68 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ--AVFLEVDVHQ--------CQGTA----A-----------------   68 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT--------SHHHH----H-----------------
T ss_pred             CCCEEEEEEECCCCCCccccchhhhcccccccc--cccccccccc--------chhhh----h-----------------
Confidence            478999999999999999999999999999864  8888898773        22221    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                          .|             +|.++|+++++ ++|+.+.++.|. +++++++.|++.|.
T Consensus        69 ----~~-------------~v~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~le  107 (107)
T d1gh2a_          69 ----TN-------------NISATPTFQFF-RNKVRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             ----HT-------------TCCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             ----hc-------------CceeceEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHhhC
Confidence                12             78889998888 899999999994 78899999998763

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.57  E-value=5.6e-15  Score=102.26  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=72.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|+++|+||++||++|+...|.++++.++++++ +.++.|++|.       . .++.    +                 
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~d~-------~-~~l~----~-----------------   72 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK-VIFLKVDVDA-------V-AAVA----E-----------------   72 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTT-------T-HHHH----H-----------------
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce-EEEEEeeccc-------c-cccc----c-----------------
Confidence            5789999999999999999999999999999865 9999999873       2 2221    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             ++.++|+++++ ++|+.+.++.|. +.++|++.|++..
T Consensus        73 ----~~-------------~v~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~~  110 (112)
T d1ep7a_          73 ----AA-------------GITAMPTFHVY-KDGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             ----HH-------------TCCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             ----cc-------------cccCCCEEEEE-ECCEEEEEEeCc-CHHHHHHHHHHHh
Confidence                12             78889998777 799999999984 7888999988753

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.56  E-value=3.7e-15  Score=103.30  Aligned_cols=88  Identities=9%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++++++|+||++||++|+...|.+.++.++++  ++.++.|+.|+       . .++.    ++                
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------~-~~l~----~~----------------   74 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN-------N-SEIV----SK----------------   74 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT-------C-HHHH----HH----------------
T ss_pred             CCCeEEEEEECCCCccchhhceeccccccccc--ccccccccccc-------c-hhhH----HH----------------
Confidence            56799999999999999999999999999986  49999999873       2 2221    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                           |             +|.++|+++++ ++|+.+.++.|. +++.+.+.|+++++
T Consensus        75 -----~-------------~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~l~~~ik  112 (113)
T d1r26a_          75 -----C-------------RVLQLPTFIIA-RSGKMLGHVIGA-NPGMLRQKLRDIIK  112 (113)
T ss_dssp             -----T-------------TCCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHHH
T ss_pred             -----c-------------cccCCCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence                 2             78889998777 899999999995 57889999998873

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=1.7e-15  Score=105.94  Aligned_cols=91  Identities=7%  Similarity=0.146  Sum_probs=68.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++++++.||++|||+|+...|.|.++.++|++..+.++.|..|           +-.+.+ ++                
T Consensus        29 ~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d-----------~~~~l~-~~----------------   80 (119)
T d2es7a1          29 GDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE-----------QSEAIG-DR----------------   80 (119)
T ss_dssp             CSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHH-----------HHHHHH-HT----------------
T ss_pred             CCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC-----------CCHHHH-Hh----------------
Confidence            45799999999999999999999999999998766888878644           222222 21                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                           |             +|.++|+++++ ++|+.+.++.|..+.+++.+.|+++|+
T Consensus        81 -----~-------------~V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          81 -----F-------------NVRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             -----T-------------TCCSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             -----c-------------CcCcceEEEEE-EcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence                 2             88889999998 799999999999999999999999985

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.55  E-value=2.9e-17  Score=121.91  Aligned_cols=113  Identities=13%  Similarity=0.050  Sum_probs=83.0

Q ss_pred             cCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311           83 DLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus        83 ~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .+++++|+++++.||++|||+|+.++|.|.++++++++  +.+..|++|.       +.+.+.+|. .+.+..+|.+...
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~--~~~~~i~~d~-------~~~~~~~~~-~~~~~~~p~~~~~  117 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN--IELAIISKGR-------AEDDLRQRL-ALERIAIPLVLVL  117 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT--EEEEEECHHH-------HHHHTTTTT-TCSSCCSSEEEEE
T ss_pred             HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC--CcEEEEECcc-------CHHHHHHHH-Hhccccccceeec
Confidence            45677899999999999999999999999999999875  6666677663       555666665 5567777776544


Q ss_pred             cCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                      |.......                ...+.|++++++++|.++..+.|....+.+++.|+
T Consensus       118 d~~~~~~~----------------~~~~~P~~~~~~~~~~~~~~~~G~~~~~~~~eil~  160 (166)
T d1z6na1         118 DEEFNLLG----------------RFVERPQAVLDGGPQALAAYKAGDYLEHAIGDVLA  160 (166)
T ss_dssp             CTTCCEEE----------------EEESSCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             Cccchhcc----------------cccccchhheecccceeeeeccccccHHHHHHHHH
Confidence            44433221                34457888999999998888888776665555444

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=3.4e-15  Score=106.16  Aligned_cols=90  Identities=7%  Similarity=0.077  Sum_probs=75.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++|+|.||++|||+|+...|.|.++.++|+++.+.+..|..|        ..   .+.+ +                 
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d--------~~---~~la-~-----------------   85 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE--------QS---EAIG-D-----------------   85 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHH--------HH---HHHH-H-----------------
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEec--------CC---HHHH-H-----------------
Confidence            45789999999999999999999999999998877777778654        11   2221 1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             +|.++|+++++ ++|+.+.++.|..+.+++.+.|++++
T Consensus        86 ----~~-------------~V~~~PT~~~~-~~G~~v~~~~G~~~~~~l~~~i~~ll  124 (132)
T d2hfda1          86 ----RF-------------GVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_dssp             ----HH-------------TCCSCCEEEEE-ETTEEEEEECCCSCHHHHHHHHHHHH
T ss_pred             ----hh-------------ccCcceeEEEE-EcCcEeeeecCCCCHHHHHHHHHHHh
Confidence                13             88889998888 89999999999999999999999886

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.54  E-value=1.4e-14  Score=100.39  Aligned_cols=86  Identities=14%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|++||+||++||++|+...|.+.++.+++.+  +.++.|..|.       . ..+.    +                 
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~-------~-~~l~----~-----------------   73 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--VTFLKVDVDE-------L-KAVA----E-----------------   73 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS--EEEEEEETTT-------C-HHHH----H-----------------
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCCC--ceEEeeeeec-------c-cccc----c-----------------
Confidence            578999999999999999999999999999853  7888888763       2 2221    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~l  223 (225)
                          .|             +|.++||++++ ++|+.+.+..|. ++++|.+.|++.
T Consensus        74 ----~~-------------~I~~~Pt~~~~-k~G~~v~~~~G~-~~~~l~~~i~k~  110 (113)
T d1ti3a_          74 ----EW-------------NVEAMPTFIFL-KDGKLVDKTVGA-DKDGLPTLVAKH  110 (113)
T ss_dssp             ----HH-------------HCSSTTEEEEE-ETTEEEEEEECC-CTTHHHHHHHHH
T ss_pred             ----cC-------------eecccceEEEE-ECCEEEEEEcCC-CHHHHHHHHHHH
Confidence                12             78889998888 699999999994 677898888764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.52  E-value=2.1e-14  Score=99.27  Aligned_cols=88  Identities=17%  Similarity=0.241  Sum_probs=70.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|+++|+||++||++|+...|.+.++.+++++  +.++.|..|.       ...++.    +                 
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--v~~~~vd~~~-------~~~~l~----~-----------------   73 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCNQ-------ENKTLA----K-----------------   73 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSS-------TTHHHH----H-----------------
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc--ceeecccccc-------cchhhH----h-----------------
Confidence            357999999999999999999999999999864  7888888752       122222    1                 


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                          .|             +|.++|+++++ ++|+++.++.|. +++++.+.|++..
T Consensus        74 ----~~-------------~V~~~Pt~~~~-k~G~~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          74 ----EL-------------GIRVVPTFKIL-KENSVVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             ----HH-------------CCSSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             ----he-------------eeccCCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHcc
Confidence                12             88889999999 799999999996 5678888887753

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.49  E-value=5.4e-14  Score=103.60  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=90.5

Q ss_pred             CCCceecCeEEeCCCC---CeecCCcc-CCCEEEEEEc-ccCCCCChHhHHHHHHHHH-HHhcCCe-EEEEEecCCCCCC
Q 027311           64 QSKTSVHDFSVKDAKG---QDVDLSIY-KGKLLLIVNV-ASQCGLTNSNYTELSQLYD-KYKNQGL-EILAFPCNQFGAQ  136 (225)
Q Consensus        64 ~~g~~~p~f~l~~~~G---~~~~l~~~-~gk~vlv~F~-~twC~~C~~~~~~l~~l~~-~~~~~~~-~iv~Is~d~~~~~  136 (225)
                      ..|+.+|+|++....|   +.++++++ +||+|||.|+ +.++|.|..++..+.+.+. ....++. .++.++++     
T Consensus         2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~-----   76 (163)
T d1nm3a2           2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN-----   76 (163)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS-----
T ss_pred             CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecC-----
Confidence            3799999999998877   47999995 9999888777 8899999999987766543 3333332 45555555     


Q ss_pred             CCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCC
Q 027311          137 EPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPT  210 (225)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~  210 (225)
                         +....++|..+.....+++++  |..+. ..+.|+.......  .|.+..+...+|||| +|+|++.+...
T Consensus        77 ---d~~~~~a~~~~~~~~~~~lls--D~~~~-~~~~~g~~~~~~~--~g~g~~s~R~~~Iid-dG~I~~~~v~~  141 (163)
T d1nm3a2          77 ---DTFVMNAWKEDEKSENISFIP--DGNGE-FTEGMGMLVGKED--LGFGKRSWRYSMLVK-NGVVEKMFIEP  141 (163)
T ss_dssp             ---CHHHHHHHHHHTTCTTSEEEE--CTTSH-HHHHTTCEEECTT--TTCCEEECCEEEEEE-TTEEEEEEECC
T ss_pred             ---CHHHHHHHhhhhccCceeeec--cCChH-HHHHhhhhccccc--cccccccceEEEEEe-CCEEEEEEEec
Confidence               566667776566677888884  54443 3334444332221  122344567889998 99999886543

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.46  E-value=1.1e-13  Score=94.11  Aligned_cols=85  Identities=12%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++++++|.||++||++|+...|.+.++.+++++  ..++.++.|.       .. ++.    ++                
T Consensus        17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~vd~d~-------~~-~~~----~~----------------   66 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDVDE-------VS-EVT----EK----------------   66 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------TH-HHH----HH----------------
T ss_pred             CCCcEEEEEeCCcccCcccccccchhhhhcccc--eEEEeecccc-------Cc-cee----ee----------------
Confidence            468999999999999999999999999999864  6788888773       22 211    11                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~  222 (225)
                           |             +|.++||++++ ++|+.+.++.|. +.+++++.|++
T Consensus        67 -----~-------------~V~~~Pt~i~~-k~G~~v~~~~G~-~~~~l~~~i~k  101 (103)
T d1syra_          67 -----E-------------NITSMPTFKVY-KNGSSVDTLLGA-NDSALKQLIEK  101 (103)
T ss_dssp             -----T-------------TCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHT
T ss_pred             -----e-------------eeecceEEEEE-ECCEEEEEEeCc-CHHHHHHHHHh
Confidence                 2             78889987777 799999999985 57788888875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=2.9e-14  Score=93.57  Aligned_cols=84  Identities=8%  Similarity=0.095  Sum_probs=64.4

Q ss_pred             CCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCC
Q 027311           89 GKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDN  168 (225)
Q Consensus        89 gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  168 (225)
                      +|+.|+.|||+||++|+...|.+.++.+++++. +.++.+..|+                                . ..
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~d~--------------------------------~-~~   47 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVME--------------------------------N-PQ   47 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS-EEEEEEESSS--------------------------------S-CC
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccc-cccccccccc--------------------------------c-cc
Confidence            688999999999999999999999999998765 7777776552                                0 00


Q ss_pred             chhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          169 AAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                      ..+.|             +|.++||+ +++++|+    +.|..+.+++.+.|++.|
T Consensus        48 la~~~-------------~V~~~Pt~-~i~~~g~----~~G~~~~~~l~~~i~~~L   85 (85)
T d1fo5a_          48 KAMEY-------------GIMAVPTI-VINGDVE----FIGAPTKEALVEAIKKRL   85 (85)
T ss_dssp             TTTST-------------TTCCSSEE-EETTEEE----CCSSSSSHHHHHHHHHHC
T ss_pred             ccccC-------------CceEeeEE-EEECCcE----EECCCCHHHHHHHHHhcC
Confidence            11123             88999995 6778875    457788899999998864

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.45  E-value=1.2e-13  Score=95.82  Aligned_cols=90  Identities=17%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+++++|.||++|||+|+...|.+.++.++++.+ +.+  |.+|.     .++.+..++++ ++                
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-v~~--v~~~~-----~~~~~~~~~~~-~~----------------   79 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-IYF--INSEE-----PSQLNDLQAFR-SR----------------   79 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-CEE--EETTC-----GGGHHHHHHHH-HH----------------
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-hhh--heeec-----ccccccccccc-cc----------------
Confidence            4789999999999999999999999999998654 444  45442     11344444444 22                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                           |             +|.++|+.+++ ++|+++.++.|..+.+++++.|.
T Consensus        80 -----~-------------~V~~~PTli~~-~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          80 -----Y-------------GIPTVPGFVHI-TDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             -----H-------------TCCSSCEEEEE-ETTEEEEECCTTCCHHHHHHHHT
T ss_pred             -----c-------------ccccccEEEEE-ECCEEEEEEcCCCCHHHHHHHHc
Confidence                 2             78889999888 58999999999999999888763

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-13  Score=95.84  Aligned_cols=47  Identities=9%  Similarity=0.020  Sum_probs=42.0

Q ss_pred             CCccCCCEEEEEEccc-------CCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           84 LSIYKGKLLLIVNVAS-------QCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        84 l~~~~gk~vlv~F~~t-------wC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +++.+||+++|+|||+       ||++|+...|.+.++.++++++ +.++.|++|
T Consensus        16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~-~~~~~vdv~   69 (119)
T d1woua_          16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG-CVFIYCQVG   69 (119)
T ss_dssp             HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT-EEEEEEECC
T ss_pred             HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc-eEEEEEECC
Confidence            4456899999999995       9999999999999999988755 999999987

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=3.8e-13  Score=88.14  Aligned_cols=82  Identities=10%  Similarity=0.062  Sum_probs=62.1

Q ss_pred             EEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCCCchh
Q 027311           92 LLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAP  171 (225)
Q Consensus        92 vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  171 (225)
                      .|..||++||++|+...|.++++.++++++ +.++.|++|+       ..+                          ...
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~d~-------~~~--------------------------l~~   49 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIMV-------DRE--------------------------KAI   49 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSS-CCEEEECTTT-------CGG--------------------------GGG
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccccc-cccccccccc-------chh--------------------------hHH
Confidence            355699999999999999999999999765 8888888763       111                          111


Q ss_pred             hhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          172 LYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                      .|             +|.++|++ ++|.+|    ++.|..+.+++.+.|++.|+
T Consensus        50 ~~-------------~V~~~Pt~-~~~~~~----~~~G~~~~~~l~~~i~~~l~   85 (85)
T d1nhoa_          50 EY-------------GLMAVPAI-AINGVV----RFVGAPSREELFEAINDEME   85 (85)
T ss_dssp             GT-------------CSSCSSEE-EETTTE----EEECSSCCHHHHHHHHHHCC
T ss_pred             hc-------------CceEeCEE-EECCcE----EEEcCCCHHHHHHHHHHhhC
Confidence            13             88999985 455554    34578889999999998774

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=2.1e-12  Score=89.96  Aligned_cols=90  Identities=14%  Similarity=0.165  Sum_probs=70.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      +++.++|.||++||++|+...|.+.++.+++++.++.+..|++|.       . .++.    .+                
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~-------~-~~l~----~~----------------   77 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-------N-QDLC----ME----------------   77 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT-------C-HHHH----HH----------------
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccc-------h-HHHH----HH----------------
Confidence            467999999999999999999999999999987779999998773       2 2221    21                


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcE--EEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV--VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I--~~~~~g~~~~~~l~~~l~~ll  224 (225)
                           |             +|.++|+++++ ++|+.  ...+.|..+.+++.+.|++..
T Consensus        78 -----~-------------~v~~~Pti~~f-~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          78 -----H-------------NIPGFPSLKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             -----T-------------TCCSSSEEEEE-ETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             -----h-------------ccccCCeEEEE-ECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence                 2             67778998888 55533  345778888899999998764

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.5e-13  Score=94.36  Aligned_cols=88  Identities=10%  Similarity=0.001  Sum_probs=65.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .+|++||.||++||++|+...|.+.++.+++++. +.++.|.+|+       .+                          
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~VDvd~-------~~--------------------------   66 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDITE-------VP--------------------------   66 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTT-------CC--------------------------
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc-ceEEEeeccc-------cc--------------------------
Confidence            4789999999999999999999999999999865 8999998873       10                          


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC----------ChhhHHHHHHhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT----------SPLSIEVVLECL  223 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~----------~~~~l~~~l~~l  223 (225)
                      ...+.|             +|.++|+++++ ++|+.+....|..          +.+++.+.++.+
T Consensus        67 ~la~~~-------------~I~~~PT~~~f-~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          67 DFNKMY-------------ELYDPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             TTTTSS-------------CSCSSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             hhhhhc-------------CeeeEEEEEEE-eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            011122             88899999988 7788877665543          344566666544

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.27  E-value=9.5e-12  Score=83.18  Aligned_cols=83  Identities=10%  Similarity=-0.013  Sum_probs=62.0

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +++|.+.++.|+++|||+|+...|.++++..++.  ++.+..|..|.       ..+ +.    ++              
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~-------~~~-l~----~~--------------   63 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGT-------FQN-EI----TE--------------   63 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTT-------CHH-HH----HH--------------
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC--ceEEEEEeccc-------chH-HH----hh--------------
Confidence            4567788899999999999999999999988764  38888888763       222 11    11              


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHH
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLE  221 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~  221 (225)
                             |             +|.++|++++   +|+.+  +.|..+.+++.+.|+
T Consensus        64 -------~-------------~I~~vPt~~~---ng~~~--~~G~~~~~~l~~~le   94 (96)
T d1hyua4          64 -------R-------------NVMGVPAVFV---NGKEF--GQGRMTLTEIVAKVD   94 (96)
T ss_dssp             -------T-------------TCCSSSEEEE---TTEEE--EESCCCHHHHHHHHC
T ss_pred             -------c-------------ccccccEEEE---CCEEE--EecCCCHHHHHHHHh
Confidence                   2             7888999765   77776  457777888877764

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7.7e-13  Score=94.19  Aligned_cols=44  Identities=11%  Similarity=0.228  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHh-cCCeEEEEEe
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK-NQGLEILAFP  129 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~-~~~~~iv~Is  129 (225)
                      .-.||+++|+||++||++|+.+.+.+.+..+..+ ..++..+.|.
T Consensus        22 ~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd   66 (135)
T d1sena_          22 AASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLE   66 (135)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEE
T ss_pred             HHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCC
Confidence            3469999999999999999999999876654333 2235444443

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.5e-12  Score=88.20  Aligned_cols=90  Identities=18%  Similarity=0.240  Sum_probs=67.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC--eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG--LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~--~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      ++|.+||.||++||++|+...|.+.++.++++..+  +.++.|+.|.       .                         
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~-------------------------   70 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------E-------------------------   70 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT-------C-------------------------
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc-------c-------------------------
Confidence            47899999999999999999999999999997653  6666666542       0                         


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE--EEEcCCCCChhhHHHHHHhhh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV--VERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I--~~~~~g~~~~~~l~~~l~~ll  224 (225)
                       ......|             +|.++|+++++ ++|+.  ...+.|..+.+++.+.|++.+
T Consensus        71 -~~l~~~~-------------~i~~~Pt~~~~-~~G~~~~~~~~~g~~~~~~l~~fi~~~~  116 (120)
T d1meka_          71 -SDLAQQY-------------GVRGYPTIKFF-RNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             -CSSHHHH-------------TCCSSSEEEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             -hhHHHHh-------------CCccCCeEEEE-ECCeEeeeEEecCCCCHHHHHHHHHHhh
Confidence             0111123             78889998877 44533  346788888899999988754

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.5e-10  Score=81.26  Aligned_cols=93  Identities=11%  Similarity=0.011  Sum_probs=65.5

Q ss_pred             ccCCCEEEEEEcccCCCCChHhHHHH---HHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeee
Q 027311           86 IYKGKLLLIVNVASQCGLTNSNYTEL---SQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKV  162 (225)
Q Consensus        86 ~~~gk~vlv~F~~twC~~C~~~~~~l---~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .-++|++||+|+++||++|+..-...   .++.+.+.+ ++.++.|+.|+         ++-.++. ++           
T Consensus        39 k~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~~---------~e~~~~~-~~-----------   96 (147)
T d2dlxa1          39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDS---------EEGQRYI-QF-----------   96 (147)
T ss_dssp             HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSS---------HHHHHHH-HH-----------
T ss_pred             HHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-heeEeeecccc---------hhhhhhh-hh-----------
Confidence            34689999999999999999765533   345555544 38888888762         2333333 22           


Q ss_pred             cCCCCCchhhhhhccccCCCCCCCccccceeEEEECC-CCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          163 DVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDK-EGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       163 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                |             ++.++|++++||| .|+++..+ |..+++++.+.|+..|
T Consensus        97 ----------y-------------~v~~~Pti~~idp~~ge~v~~~-~~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1          97 ----------Y-------------KLGDFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFL  135 (147)
T ss_dssp             ----------H-------------TCCSSSEEEEECTTTCCCCEEE-SSCCHHHHHHHHHHHH
T ss_pred             ----------e-------------ecCceeEEEEEeCCCCeEeccc-CCCCHHHHHHHHHHHH
Confidence                      3             6777899999998 58887665 4577888888887765

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=6.3e-11  Score=84.56  Aligned_cols=103  Identities=20%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             EeCCCCCeecCCc-cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 027311           74 VKDAKGQDVDLSI-YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRF  152 (225)
Q Consensus        74 l~~~~G~~~~l~~-~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~  152 (225)
                      +..++|+++.--- -.++.++|.||++||++|+...|.+.++.+.|++.+..+..+.+|.                 .. 
T Consensus        14 V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~-----------------~~-   75 (140)
T d2b5ea1          14 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH-----------------TE-   75 (140)
T ss_dssp             EEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG-----------------GG-
T ss_pred             cEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec-----------------cc-
Confidence            3344555443111 1467999999999999999999999999999986544444444441                 00 


Q ss_pred             CCCcceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEE--EcCCCCChhhHHHHHHhh
Q 027311          153 KAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVE--RYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       153 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~--~~~g~~~~~~l~~~l~~l  223 (225)
                                    .... -|             +|.++|+++++. +|+...  .+.|..+.+.+.+.|++-
T Consensus        76 --------------~~~~-~~-------------~v~~~Ptl~~f~-~g~~~~~~~y~G~~t~~~l~~fi~~~  119 (140)
T d2b5ea1          76 --------------NDVR-GV-------------VIEGYPTIVLYP-GGKKSESVVYQGSRSLDSLFDFIKEN  119 (140)
T ss_dssp             --------------CCCS-SC-------------CCSSSSEEEEEC-CTTSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred             --------------hhcc-cc-------------ccccCCeEEEEE-CCEEcceeEeCCCCCHHHHHHHHHHc
Confidence                          0000 12             788899999984 565443  356777888888888763

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.06  E-value=7.2e-10  Score=81.51  Aligned_cols=129  Identities=14%  Similarity=0.204  Sum_probs=88.2

Q ss_pred             CCceecCeEEe----------CCCC-----CeecCCc-cCCCEEEEEEc-ccCCCCChH-hHHHHHHHHHHH-hcCCe-E
Q 027311           65 SKTSVHDFSVK----------DAKG-----QDVDLSI-YKGKLLLIVNV-ASQCGLTNS-NYTELSQLYDKY-KNQGL-E  124 (225)
Q Consensus        65 ~g~~~p~f~l~----------~~~G-----~~~~l~~-~~gk~vlv~F~-~twC~~C~~-~~~~l~~l~~~~-~~~~~-~  124 (225)
                      .|+.+|+.++.          +.+|     +.+++++ ++||.+||.+. +.+.|.|.. .+|.+.+.++++ +.+|+ +
T Consensus         2 ~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~   81 (179)
T d1xiya1           2 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDD   81 (179)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSE
T ss_pred             CCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCce
Confidence            57778887663          3344     3566777 48887766554 889999976 699999999998 57777 7


Q ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc-ceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE
Q 027311          125 ILAFPCNQFGAQEPGDNEQIQEFACTRFKAEF-PIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV  203 (225)
Q Consensus       125 iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I  203 (225)
                      |+.||+|        ++-.+++|. +.++.+. .++  .|..+.. .+.++......+  .|.+.++.-..+||| +|+|
T Consensus        82 I~~iSvn--------D~fv~~aW~-~~~~~~~I~~l--sD~~g~f-~k~lg~~~d~~~--~g~G~Rs~R~a~iid-dg~I  146 (179)
T d1xiya1          82 IYCITNN--------DIYVLKSWF-KSMDIKKIKYI--SDGNSSF-TDSMNMLVDKSN--FFMGMRPWRFVAIVE-NNIL  146 (179)
T ss_dssp             EEEEESS--------CHHHHHHHH-HHTTCCSSEEE--ECTTSHH-HHHTTCEEECGG--GTCCEEECCEEEEEE-TTEE
T ss_pred             EEEEecC--------CHHHHHHHH-hhcCcceEEEe--eCCchHH-HHhhhccccccc--CCCeeEEeeEEEEEE-CCEE
Confidence            9999998        788889998 6667765 555  4555443 334444332211  122566667789998 8999


Q ss_pred             EEEcC
Q 027311          204 VERYA  208 (225)
Q Consensus       204 ~~~~~  208 (225)
                      .+.+.
T Consensus       147 ~~~~v  151 (179)
T d1xiya1         147 VKMFQ  151 (179)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98754

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.04  E-value=4.6e-10  Score=78.30  Aligned_cols=90  Identities=13%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             CCCEEEEEEcccCCCCCh------HhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 027311           88 KGKLLLIVNVASQCGLTN------SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDK  161 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~------~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
                      +++.++|.||++||+.|.      ...+.+.+..+.+.+.++.+..|+.+.        ..++   + ++          
T Consensus        27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~--------~~~l---~-~~----------   84 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--------DAAV---A-KK----------   84 (124)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT--------SHHH---H-HT----------
T ss_pred             hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec--------ccch---h-hc----------
Confidence            467899999999998642      233344445555556678999998763        1222   1 21          


Q ss_pred             ecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhhC
Q 027311          162 VDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLCC  225 (225)
Q Consensus       162 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll~  225 (225)
                                 |             +|.++||++++ ++|+.+ .+.|..+.+.+.+.|.++++
T Consensus        85 -----------~-------------~I~~yPTi~~f-~~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          85 -----------L-------------GLTEEDSIYVF-KEDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             -----------T-------------TCCSTTCEEEE-ESSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             -----------c-------------ccccCCcEEEe-ccCccE-EeeCCCCHHHHHHHHHHhcC
Confidence                       2             78889999888 568876 57888899999999988874

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.03  E-value=5.9e-10  Score=76.61  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=59.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeE-EEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLE-ILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~-iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      .+|++||.||++||++|+...|.+.++.+++...... .+.+..+                               +.. 
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~-------------------------------~~~-   66 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV-------------------------------DAT-   66 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEE-------------------------------ETT-
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEec-------------------------------ccc-
Confidence            5789999999999999999999999999999765321 1111111                               000 


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCc--EEEEcCCCCChhhHHHHHHhh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN--VVERYAPTTSPLSIEVVLECL  223 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~--I~~~~~g~~~~~~l~~~l~~l  223 (225)
                      . ....+             +|.++|+++++ ++|.  -...+.|..+.+++.+.|++-
T Consensus        67 ~-~~~~~-------------~v~~~Pti~~f-~~g~~~~~~~~~g~~~~~~l~~fi~~~  110 (116)
T d2djja1          67 A-NDVPD-------------EIQGFPTIKLY-PAGAKGQPVTYSGSRTVEDLIKFIAEN  110 (116)
T ss_dssp             T-SCCSS-------------CCSSSSEEEEE-CSSCTTSCCCCCCCSCHHHHHHHHHHT
T ss_pred             h-hhhcc-------------cccCCCEEEEE-ECCccCceEEecCCCCHHHHHHHHHHc
Confidence            0 00011             78889999888 3343  223567777888898888763

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=1.1e-09  Score=76.18  Aligned_cols=94  Identities=11%  Similarity=0.067  Sum_probs=63.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhc--CCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKN--QGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVN  165 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~--~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  165 (225)
                      +.|.+||.||++||++|+.  |.+.++.+++.+  ..+.+..|.+++++..   ...++.    .++++           
T Consensus        18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~---~n~~l~----~~~~i-----------   77 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGEL---ENKALG----DRYKV-----------   77 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTC---TTHHHH----HHTTC-----------
T ss_pred             cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccc---cCHHHH----HHhhc-----------
Confidence            4689999999999999994  899999988753  3477778887642211   112221    22111           


Q ss_pred             CCCchhhhhhccccCCCCCCCccccceeEEEECCCCcE--EEEcCCCCChhhHHHHHHh
Q 027311          166 GDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNV--VERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I--~~~~~g~~~~~~l~~~l~~  222 (225)
                                           .+.++||++++.+.+..  ...+.|..+.+.+.+.|++
T Consensus        78 ---------------------~~~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~  115 (122)
T d2c0ga2          78 ---------------------DDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSA  115 (122)
T ss_dssp             ---------------------CTTSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHH
T ss_pred             ---------------------ccCCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHH
Confidence                                 33568999999765543  2345677788888888875

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=1.1e-08  Score=78.03  Aligned_cols=85  Identities=12%  Similarity=0.123  Sum_probs=64.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ++.+|||+||++||+.|....+.|.++..+|++  +.++.|+.+.                 .  .    .         
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~--vkF~ki~~~~-----------------~--~----~---------  164 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM--VKFCKIRASN-----------------T--G----A---------  164 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT--SEEEEEEHHH-----------------H--T----C---------
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc--ceEEEEcccc-----------------c--h----h---------
Confidence            356899999999999999999999999999965  8999887431                 0  0    0         


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCC-------ChhhHHHHHHh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTT-------SPLSIEVVLEC  222 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~-------~~~~l~~~l~~  222 (225)
                       .. .|             ++.++|+++++ ++|+++.+.+|..       +.++|+..|.+
T Consensus       165 -~~-~~-------------~i~~lPtl~~y-k~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~  210 (217)
T d2trcp_         165 -GD-RF-------------SSDVLPTLLVY-KGGELISNFISVAEQFAEDFFAADVESFLNE  210 (217)
T ss_dssp             -ST-TS-------------CGGGCSEEEEE-ETTEEEEEETTGGGGSCSSCCHHHHHHHHHT
T ss_pred             -HH-hC-------------CCCCCCeEEEE-ECCEEEEEEECccccccccCCHHHHHHHHHH
Confidence             00 12             67778998888 9999999988743       34566666654

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.8e-08  Score=67.30  Aligned_cols=82  Identities=15%  Similarity=0.203  Sum_probs=54.6

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      ..-++|+.||++||++|....+.|+++..+|.   .+++.++.|        ...++.    ++|               
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~--------~~~~l~----~~y---------------   63 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITLP--------ENSTWY----ERY---------------   63 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTSS--------TTHHHH----HHS---------------
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc---eEEEecccc--------cCHHHH----HHh---------------
Confidence            34578888999999999999988888876664   445444433        222222    222               


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                                         ++. +|+++ |  +|+.+.  .|..+.++|++.|+++.
T Consensus        64 -------------------~~~-VPvl~-i--dg~~~~--~g~~d~~~L~~~L~~l~   95 (100)
T d1wjka_          64 -------------------KFD-IPVFH-L--NGQFLM--MHRVNTSKLEKQLRKLS   95 (100)
T ss_dssp             -------------------SSS-CSEEE-E--SSSEEE--ESSCCHHHHHHHHHSSS
T ss_pred             -------------------ccc-CCcee-e--cCceEE--eCCCCHHHHHHHHHHHh
Confidence                               333 67544 4  566653  36778999999998863

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=5e-06  Score=56.94  Aligned_cols=93  Identities=16%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC-eEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG-LEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNG  166 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~-~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  166 (225)
                      +++.++|.|+++||..|..  |..+++.+++.+.. ..+-.|.+...+.   +...++   . ++               
T Consensus        20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~---~~n~~l---~-~~---------------   75 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGD---KLNMEL---S-EK---------------   75 (122)
T ss_dssp             GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTS---CHHHHH---H-HH---------------
T ss_pred             hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccc---cccHHH---H-Hh---------------
Confidence            5789999999999998874  78899999987653 3222344321100   011111   1 11               


Q ss_pred             CCchhhhhhccccCCCCCCCccccceeEEEECCCCcEE--EEcCCCCChhhHHHHHHh
Q 027311          167 DNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVV--ERYAPTTSPLSIEVVLEC  222 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~--~~~~g~~~~~~l~~~l~~  222 (225)
                            |+           ..|.++||.+++ ++|...  ..+.|..+.+.+.+.|++
T Consensus        76 ------~~-----------~~I~~yPTi~~f-~~G~~~~~~~y~G~rt~~~l~~fi~~  115 (122)
T d1g7ea_          76 ------YK-----------LDKESYPVFYLF-RDGDFENPVPYSGAVKVGAIQRWLKG  115 (122)
T ss_dssp             ------HT-----------CSSSSCEEEEEE-ESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred             ------hc-----------ccccCCCeEEEE-ecCcccCceecCCCCCHHHHHHHHHh
Confidence                  11           156778998887 455422  356778888889888875

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=3.5e-05  Score=55.62  Aligned_cols=122  Identities=7%  Similarity=0.091  Sum_probs=64.0

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHh-----------hcCCCc
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACT-----------RFKAEF  156 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~  156 (225)
                      ..+.+|+.|.-..||+|+...+.++++.++.+   ++++.+.+.-.   .+++..........           ..+..-
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~~---v~v~~~~~~~~---~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~  108 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSGK---VQLRTLLVGVI---KPESPATAAAILASKDPAKTWQQYEASGGKL  108 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTTS---EEEEEEECCCS---STTHHHHHHHHHHSSSHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhccc---eeEEEEecccC---CcchHHHHHHHHhhhCHHHHHHHHHHhhhcc
Confidence            45688899999999999999999988876542   66666655421   12222222211101           111111


Q ss_pred             ceeeeecCCCCCchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcCCCCChhhHHHHH
Q 027311          157 PIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEVVL  220 (225)
Q Consensus       157 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~g~~~~~~l~~~l  220 (225)
                      .... .+...   ...-+.+..+..-....+++++|++|+.|++|.+. ...|..+.+.|++.|
T Consensus       109 ~~~~-~~~~~---~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~-~~~G~~~~~~l~~il  167 (169)
T d1v58a1         109 KLNV-PANVS---TEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQ-QAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CCCC-CSSCC---HHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEE-EEESSCCHHHHHHHT
T ss_pred             cccc-cchhh---HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE-EecCCCCHHHHHHHh
Confidence            1000 00000   00000000000000001899999999999999864 567777776666544

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.9e-05  Score=56.36  Aligned_cols=38  Identities=13%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP  129 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is  129 (225)
                      .+|.+|+.|.-..||+|++..+.+.++.+.    ++.++.+.
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~~~~~~~~   62 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLA   62 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEE
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----CceEEEEe
Confidence            578999999999999999999999888643    35554443

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.55  E-value=2.2e-05  Score=56.74  Aligned_cols=42  Identities=10%  Similarity=0.012  Sum_probs=34.3

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      .++++||.|+.-.||+|...-+.+.++.+++.+. +.++-+.+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc-cceeEEec
Confidence            5788999999999999999999999999998765 54444443

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.53  E-value=2.1e-05  Score=55.78  Aligned_cols=30  Identities=17%  Similarity=0.183  Sum_probs=26.5

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHH
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDK  117 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~  117 (225)
                      .+|.+|+.|.-..||+|++..+.+.++.+.
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~   54 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL   54 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhcc
Confidence            578899999999999999999999888754

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.46  E-value=0.00039  Score=49.52  Aligned_cols=49  Identities=12%  Similarity=0.197  Sum_probs=38.6

Q ss_pred             ecCCccCCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCC-eEEEEEec
Q 027311           82 VDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQG-LEILAFPC  130 (225)
Q Consensus        82 ~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~-~~iv~Is~  130 (225)
                      +.+-+-.+++.|+.|+.-.||+|.+.-+.+.++.+++.+.+ +.++-+..
T Consensus        17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (172)
T d1z6ma1          17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   66 (172)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccc
Confidence            33555556788999999999999999999999999998764 55555554

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.25  E-value=0.026  Score=34.40  Aligned_cols=34  Identities=6%  Similarity=-0.044  Sum_probs=26.1

Q ss_pred             EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEe
Q 027311           95 VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFP  129 (225)
Q Consensus        95 ~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is  129 (225)
                      ...++.|+.|.+.....++..++++- ..++.-|.
T Consensus         5 kVlg~gC~~C~~~~~~v~~a~~e~gi-~a~v~kv~   38 (77)
T d1iloa_           5 QIYGTGCANCQMLEKNAREAVKELGI-DAEFEKIK   38 (77)
T ss_dssp             EEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred             EEeCCCCccHHHHHHHHHHHHHHcCC-ceEEEEeC
Confidence            34589999999999999998888753 36666663

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.74  E-value=0.023  Score=37.79  Aligned_cols=92  Identities=18%  Similarity=0.187  Sum_probs=52.9

Q ss_pred             CccCCCEEEEEEcc-cCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeec
Q 027311           85 SIYKGKLLLIVNVA-SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVD  163 (225)
Q Consensus        85 ~~~~gk~vlv~F~~-twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  163 (225)
                      +.++..+.++.|-. ..|+.|.....-++++..- .++ +.+.-...+        + .+..+.+ ++            
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdk-i~~~~~~~~--------~-~e~~~~~-~~------------   73 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDK-LSYEIVDFD--------T-PEGKELA-KR------------   73 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTT-EEEEEEETT--------S-HHHHHHH-HH------------
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCC-eEEEEeccC--------c-chhhhHH-Hh------------
Confidence            44555566665654 5799999666666665443 333 666544443        2 2222222 22            


Q ss_pred             CCCCCchhhhhhccccCCCCCCCccccceeEEEECCC--CcEEEEcCCCCChhhHHHHHHhhh
Q 027311          164 VNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKE--GNVVERYAPTTSPLSIEVVLECLC  224 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~--G~I~~~~~g~~~~~~l~~~l~~ll  224 (225)
                               |             ++...|++.|.+..  ..|+  +.|.....++...|..++
T Consensus        74 ---------~-------------~ver~Ps~~i~~~g~~~gIr--F~GiP~GhEf~SlilaIl  112 (119)
T d1a8la1          74 ---------Y-------------RIDRAPATTITQDGKDFGVR--YFGLPAGHEFAAFLEDIV  112 (119)
T ss_dssp             ---------T-------------TCCSSSEEEEEETTBCCSEE--EESCCCTTHHHHHHHHHH
T ss_pred             ---------h-------------ccccCceEEEecCCcccceE--EEeccCchhHHHHHHHHH
Confidence                     2             66677887777642  2365  445556678888887776

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=93.08  E-value=0.065  Score=32.00  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=21.9

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      |+.|..+|||.|...-..|+       +.|+.+..+.+|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~-------~~~i~~~~~~i~   34 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALD-------RAGLAYNTVDIS   34 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTTCCCEEEETT
T ss_pred             EEEEeCCCChhHHHHHHHHH-------HcCCceEEEEcc
Confidence            44577899999996555443       245666667776

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.044  Score=33.86  Aligned_cols=37  Identities=8%  Similarity=0.053  Sum_probs=28.6

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++-|-.++||.|.+.-..|.++..++++  +.+..+.++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~--i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC--ceEEEEecC
Confidence            4557889999999888888888887764  777766654

>d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Phenol hydroxylase, C-terminal domain
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.74  E-value=0.59  Score=33.56  Aligned_cols=44  Identities=14%  Similarity=0.118  Sum_probs=35.4

Q ss_pred             CCcccccCCCceecCeEEeCC-CCCeecCCcc---CCCEEEEEEcccC
Q 027311           57 SDHTMASQSKTSVHDFSVKDA-KGQDVDLSIY---KGKLLLIVNVASQ  100 (225)
Q Consensus        57 ~~~~~~~~~g~~~p~f~l~~~-~G~~~~l~~~---~gk~vlv~F~~tw  100 (225)
                      ...+....+|+.+|+..++.. ||+++.|.+.   .|++-|+.|-+..
T Consensus        11 q~lA~~~~iG~R~~sa~V~R~aDa~p~~L~~~~~adGrfrI~vFaGd~   58 (201)
T d1pn0a2          11 QELAKNCVVGTRFKSQPVVRHSEGLWMHFGDRLVTDGRFRIIVFAGKA   58 (201)
T ss_dssp             GGGBTTSCTTSBCCCCEEEETTTTEEEEGGGGCCCSSCEEEEEEEECT
T ss_pred             hHHhcCCCCceecCCceEEEecCCCEeehhccccCCCcEEEEEEecCC
Confidence            344566789999999998886 9999999873   6999999886543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.64  E-value=0.028  Score=36.38  Aligned_cols=47  Identities=26%  Similarity=0.355  Sum_probs=26.8

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHH
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFA  148 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~  148 (225)
                      |+.|..+|||.|...-..|.++.-++  ..+.+.-+..+.       +.+.+++.+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~--~~~~~~e~d~~~-------d~~~~~~~l   60 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE--GLLEFVDITATS-------DTNEIQDYL   60 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT--TSEEEEEGGGST-------THHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc--ceeeeeeccccc-------ccHHHHHHH
Confidence            34478899999996665555433222  225565555442       445555554

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.076  Score=31.91  Aligned_cols=32  Identities=9%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             EEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           93 LIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        93 lv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ++.|..+|||.|...-..|.       +.|+.+.-+.++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~-------~~~i~y~~~~i~   34 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAME-------NRGFDFEMINVD   34 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTTCCCEEEETT
T ss_pred             EEEEeCCCCccHHHHHHHHH-------hcCceeEEEeec
Confidence            34577899999996554443       345666667766

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=91.07  E-value=0.44  Score=31.56  Aligned_cols=91  Identities=7%  Similarity=-0.008  Sum_probs=56.2

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeeecCCCC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGD  167 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  167 (225)
                      .++++++.|+.+. .........+.+++++|+++ +.++.+..++       ..    +.+ +.+++             
T Consensus        22 ~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k-i~Fv~vd~~~-------~~----~~l-~~~gl-------------   74 (133)
T d2djka1          22 AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV-INFGTIDAKA-------FG----AHA-GNLNL-------------   74 (133)
T ss_dssp             TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT-SEEEEECTTT-------TG----GGT-TTTTC-------------
T ss_pred             CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc-eEEEEEeHHH-------hH----HHH-HHhcC-------------
Confidence            4678888777554 35566678888888888876 7766664321       00    000 10000             


Q ss_pred             CchhhhhhccccCCCCCCCccccceeEEEECCCCcEEEEcC--CCCChhhHHHHHHhhh
Q 027311          168 NAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYA--PTTSPLSIEVVLECLC  224 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~I~~~~~--g~~~~~~l~~~l~~ll  224 (225)
                                         .....|..++++.++...+.+.  +..+.+.+.+.++.++
T Consensus        75 -------------------~~~~~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~  114 (133)
T d2djka1          75 -------------------KTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             -------------------CSSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred             -------------------CcccCCcEEEEEcCCCceecCCccccCCHHHHHHHHHHHH
Confidence                               1123588899988877655543  4557888888888765

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=89.95  E-value=0.26  Score=29.82  Aligned_cols=31  Identities=16%  Similarity=0.337  Sum_probs=19.0

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      ..|..+|||.|.+.-..|++       .|+.+..+.++
T Consensus         4 ~iys~~~Cp~C~~ak~~L~~-------~~i~y~~~di~   34 (82)
T d1fova_           4 EIYTKETCPYCHRAKALLSS-------KGVSFQELPID   34 (82)
T ss_dssp             EEEECSSCHHHHHHHHHHHH-------HTCCCEEEECT
T ss_pred             EEEeCCCCHhHHHHHHHHHH-------cCCCeEEEecc
Confidence            34668899999955444433       23555556655

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=89.44  E-value=0.15  Score=30.26  Aligned_cols=31  Identities=13%  Similarity=0.132  Sum_probs=20.3

Q ss_pred             EEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecC
Q 027311           94 IVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        94 v~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d  131 (225)
                      +-|..++||.|.+.-..|++.       |+.+..+.+|
T Consensus         8 ~iYs~~~C~~C~~ak~lL~~~-------~i~~~~~~v~   38 (74)
T d1nm3a1           8 SIFTKPGCPFCAKAKQLLHDK-------GLSFEEIILG   38 (74)
T ss_dssp             EEEECSSCHHHHHHHHHHHHH-------TCCCEEEETT
T ss_pred             EEEECCCCHHHHHHHHHHHHc-------CCCeEEEEcc
Confidence            447789999999666555443       3555555655

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=88.61  E-value=0.068  Score=37.74  Aligned_cols=45  Identities=13%  Similarity=0.093  Sum_probs=31.6

Q ss_pred             cCCCEEEEEEcccCCCCChHhHHHHHHHHHHHh--cCCeEEEEEecC
Q 027311           87 YKGKLLLIVNVASQCGLTNSNYTELSQLYDKYK--NQGLEILAFPCN  131 (225)
Q Consensus        87 ~~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~--~~~~~iv~Is~d  131 (225)
                      ..++++||.|+.-.||+|...-+.+..+.+...  ..++.+.-....
T Consensus        16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            467889999999999999988777755544333  223666666654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=88.52  E-value=0.023  Score=41.18  Aligned_cols=43  Identities=12%  Similarity=0.115  Sum_probs=32.9

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHH---HHHHHHhcCCeEEEEEecC
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELS---QLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~---~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+++.|+.|+.-+||+|...-|.|.   ++.+.+++. +.++.+.+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~-v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG-VKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT-CCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCC-cEEEEEecC
Confidence            4788899999899999999888764   666666644 777776653

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=0.81  Score=29.99  Aligned_cols=41  Identities=10%  Similarity=0.065  Sum_probs=29.4

Q ss_pred             CCCEEEEEEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEec
Q 027311           88 KGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPC  130 (225)
Q Consensus        88 ~gk~vlv~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~  130 (225)
                      .|+++++.|+.+.- .-......++++.++|+++ +.++.+..
T Consensus        16 ~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgk-i~Fv~~D~   56 (125)
T d2b5ea3          16 SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGL-MNFVSIDA   56 (125)
T ss_dssp             TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTT-CEEEEEEH
T ss_pred             cCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCe-eEEEEEch
Confidence            58898888887532 2334667888899999876 77777753

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.82  E-value=0.59  Score=34.21  Aligned_cols=39  Identities=10%  Similarity=0.162  Sum_probs=30.9

Q ss_pred             EEEE-EEcccCCCCChHhHHHHHHHHHHHhcCCeEEEEEecCC
Q 027311           91 LLLI-VNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQ  132 (225)
Q Consensus        91 ~vlv-~F~~twC~~C~~~~~~l~~l~~~~~~~~~~iv~Is~d~  132 (225)
                      ..|| .|.+.||..|...-..|.++.++   .++..+++++|.
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~---~~Vi~La~HVdY   45 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVDY   45 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECST
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC---CCEEEEEecccc
Confidence            3345 57799999999999999998653   359999999973

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=82.57  E-value=1.6  Score=26.78  Aligned_cols=53  Identities=17%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             CCCCeecCCccCCCEEEEEEcccCCCCChHhHHHHH-----HHHHHHhcCCeEEEEEecC
Q 027311           77 AKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELS-----QLYDKYKNQGLEILAFPCN  131 (225)
Q Consensus        77 ~~G~~~~l~~~~gk~vlv~F~~twC~~C~~~~~~l~-----~l~~~~~~~~~~iv~Is~d  131 (225)
                      .+|..+.+-++++..+.|.|-+ -|..|....-++.     .+.+++++. ..|+.|.+|
T Consensus        25 ~dGGdvelv~v~~g~V~v~l~G-aC~gC~~s~~Tlk~~Ie~~L~~~vpev-~~V~~V~~~   82 (88)
T d1xhja_          25 RDGGDCTLVDVEDGIVKLQLHG-ACGTCPSSTITLKAGIERALHEEVPGV-IEVEQVFLE   82 (88)
T ss_dssp             HHSCEEEEEECCSSEEEEEEES-SCCSSCHHHHHHHHHHHHHHHHHSTTC-CEEEEEECC
T ss_pred             hCCCcEEEEeccCCEEEEEecC-CCCCCccHHHHHHHHHHHHHHHHCCCC-ceEEEecCC
Confidence            3677888888888888887765 6788887776663     234444433 678888765