Citrus Sinensis ID: 027316

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGSSDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAPPVPSFEYK
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccEEEccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccc
Coil and Loop (DISEMBL)
mgtpetsrepcpdrilddvggafgmgavggSAFHFLKGiynspsgtrllggtqavrmnaprvggsfavwgglfstfdcsmvylrqkedpwnsifagaatgGFLSMrqglgasarsAVFGGVLLALIEGAGIMLNkvlsgpqnmpimidepepvpgmvgggppgipaglpgnpvqvaesgssdsdsswfggwfgggqkkepatsggskteilesfdappvpsfeyk
Flexible Loop (DISEMBL)
mgtpetsrepcpdRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGSSDSDSSWFGGWFGGGQKKEpatsggskteilesfdappvpsfeyk
Low Complexity Region (SEG)
MGTPETSREPCPDRILDDvggafgmgavggsafHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPIMIDEpepvpgmvgggppgipaglpgnpVQVAEsgssdsdsswfggwfgggQKKEPATSGGSKTEILESFDAPPVPSFEYK
Disordered region (IsUnstruct)
**************ILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSG***********************************************WFGGWFG********************************
Disordered Region (DISOPRED)
******S***CPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNK**********************************************************************************PVP*****
Disordered Region (DISEMBL)
**********CPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPV***********SSWFGGWFGGG***********KTEILESFDAPPVPSFEYK
Disordered Region (DISPRO)
*****TSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGP************************************************************************SFDAPPVPSFE*K
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGSSDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAPPVPSFEYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q9SP35	243	Mitochondrial import inne	yes	no	0.986	0.913	0.654	3e-77
Q9LN27	218	Mitochondrial import inne	no	no	0.955	0.986	0.618	2e-70
O60830	172	Mitochondrial import inne	yes	no	0.72	0.941	0.533	7e-40
Q2HJE9	172	Mitochondrial import inne	yes	no	0.72	0.941	0.527	7e-39
Q9Z0V7	172	Mitochondrial import inne	yes	no	0.715	0.936	0.524	1e-38
Q99595	171	Mitochondrial import inne	no	no	0.666	0.877	0.555	4e-38
Q9Z0V8	171	Mitochondrial import inne	no	no	0.608	0.801	0.590	6e-38
O35092	171	Mitochondrial import inne	no	no	0.608	0.801	0.583	2e-37
Q9VGA2	222	Probable mitochondrial im	no	no	0.635	0.644	0.517	3e-37
Q9VNA0	179	Probable mitochondrial im	no	no	0.582	0.731	0.586	3e-37

>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2

 Score =  288 bits (736), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/246 (65%), Positives = 178/246 (72%), Gaps = 24/246 (9%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGGSAFHF+KG YNSP G+R +GGTQ+V MNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           R GGSFAVWGGLFSTFDC+MVYLRQKEDPWNSI AGAATGGFLSMRQG GA++RSA+FGG
Sbjct: 61  RTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPG---------- 170
           VLLALIEGAGIMLNKVL+ PQNM +M D        + G                     
Sbjct: 121 VLLALIEGAGIMLNKVLAQPQNM-MMEDPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQM 179

Query: 171 ----------NPVQVAESGSSDSDSSWFGGWFGGGQKKEPATSGG-SKTEILESFDAPPV 219
                     +  Q   + SS S SSWFGG F   +KKE    G  SKTE+LESFDAPPV
Sbjct: 180 GQMQSQAQIRSESQNQNTASSSSSSSWFGGLF--DKKKEEVQPGSESKTEVLESFDAPPV 237

Query: 220 PSFEYK 225
           PSFE+K
Sbjct: 238 PSFEFK 243

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN27|TI171_ARATH Mitochondrial import inner membrane translocase subunit TIM17-1 OS=Arabidopsis thaliana GN=TIM17-1 PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/228 (61%), Positives = 165/228 (72%), Gaps = 13/228 (5%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPE+SREPCPDRILDDVGGAF MGAVGGSA+H ++GIYNSP G RL GG QA+RM+ P
Sbjct: 1   MGTPESSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGGARLSGGVQALRMSGP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           R GGSF+VWGGL+STFDC++VY RQKEDPWNSI +GAATGGFLS+RQGLGASARSA+ GG
Sbjct: 61  RSGGSFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSALVGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGL---PGNPVQVAE 177
           VLLA+IEG GIMLNKV S   N   M D               +P G+    G  V V E
Sbjct: 121 VLLAMIEGVGIMLNKVQSTAHNEQFMEDH----------AATSLPYGMGQISGQSVPVPE 170

Query: 178 SGSSDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAPPVPSFEYK 225
           + SS S S  + G     +K+       S+T ILESFDAPPVP++E+K
Sbjct: 171 TSSSSSGSVSWFGSLFKKKKETEDHHSESRTHILESFDAPPVPTYEFK 218

Essential component of the TIM17:23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane. Links the inner and outer membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1

 Score =  163 bits (413), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 110/165 (66%), Gaps = 3/165 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTR--LLGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F  +KG  N+P G R  L G   AVR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQI 62

Query: 63  GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
           GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  A   SA+ GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query: 123 LALIEGAGIMLNKVLSGP-QNMPIMIDEPEPVPGMVGGGPPGIPA 166
           LALIEG GI+L +  +   +N P  +++P  +P   G   PG P+
Sbjct: 123 LALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPS 167

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1

 Score =  160 bits (405), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 109/165 (66%), Gaps = 3/165 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTR--LLGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F  +KG  N+P G R  L G   AVR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQI 62

Query: 63  GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
           GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R    A   SA+ GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVGSAMMGGIL 122

Query: 123 LALIEGAGIMLNKVLSGP-QNMPIMIDEPEPVPGMVGGGPPGIPA 166
           LALIEG GI+L +  +   +N P  +++P  +P   G   PG P+
Sbjct: 123 LALIEGVGILLTRYTAQQFRNAPPFLEDPGQLPSKEGTPGPGYPS 167

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Bos taurus (taxid: 9913)

>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTR--LLGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F  +KG  N+P G R    G   AVR+ AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQI 62

Query: 63  GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
           GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  A   SA+ GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query: 123 LALIEGAGIMLNKVLSGP-QNMPIMIDEPEPVPGMVGGGPPGIP 165
           LALIEG GI+L +  +   +N P  +++P  +    G   PG P
Sbjct: 123 LALIEGVGILLTRYTAQQFRNAPPFLEDPSQLTPKEGSPAPGYP 166

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Mus musculus (taxid: 10090)

>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 102/153 (66%), Gaps = 3/153 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F  +KG  NSP G   RL G   A++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query: 63  GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
           GGSFAVWGGLFS  DCSMV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+L
Sbjct: 63  GGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query: 123 LALIEGAGIMLNKVLSGP-QNMPIMIDEPEPVP 154
           LALIEGAGI+L +  S    N P   ++P  +P
Sbjct: 123 LALIEGAGILLTRFASAQFPNGPQFAEDPSQLP 155

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=2 SV=1

 Score =  157 bits (397), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 98/144 (68%), Gaps = 7/144 (4%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F   KG  NSP G   RL G   A++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQL 62

Query: 63  GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
           GGSFAVWGGLFST DCSMV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query: 123 LALIEGAGIMLNKVLS-----GPQ 141
           LALIEGAGI+L +  S     GPQ
Sbjct: 123 LALIEGAGILLTRFASAQFPNGPQ 146

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Mus musculus (taxid: 10090)

>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 97/144 (67%), Gaps = 7/144 (4%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
           E +REPCP RI+DD GGAF MG +GG  F   KG  NSP G   RL G   A++  AP++
Sbjct: 3   EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query: 63  GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
           GGSFAVWGGLFST DC MV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+L
Sbjct: 63  GGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query: 123 LALIEGAGIMLNKVLS-----GPQ 141
           LALIEGAGI+L +  S     GPQ
Sbjct: 123 LALIEGAGILLTRFASAQFPNGPQ 146

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 100/145 (68%), Gaps = 2/145 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSG--TRLLGGTQAVRMNAPRV 62
           E +R+PCP RI++D G AF MG +GGS F FLKG  N+P+G   RL GG   V+M  P +
Sbjct: 2   EYNRQPCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSI 61

Query: 63  GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
            GSFAVWG  FST DC++V+ RQ+ED WNSI +GAATGG L+ R G+ A A SA+ G ++
Sbjct: 62  AGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLV 121

Query: 123 LALIEGAGIMLNKVLSGPQNMPIMI 147
           LA+IEGAG  +  + +  +   I+I
Sbjct: 122 LAMIEGAGAAVATINAADKGAGIVI 146

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2

 Score =  154 bits (390), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 95/133 (71%), Gaps = 2/133 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
           E  REPCP RI++D GGAF MGA+GG AF  +KG  N+PSG   RL GG  AVR  +  V
Sbjct: 3   EYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLV 62

Query: 63  GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
           GG+FAVWG  FS  DCS+VY R+KEDPWN+I +GA TGG L+ R GL +   SA+ GG L
Sbjct: 63  GGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGAL 122

Query: 123 LALIEGAGIMLNK 135
           LALIEG GI+++ 
Sbjct: 123 LALIEGVGIVVSH 135

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
356575929	213	PREDICTED: mitochondrial import inner me	0.937	0.990	0.735	4e-88
224126157	221	predicted protein [Populus trichocarpa]	0.982	1.0	0.795	1e-86
449435782	226	PREDICTED: mitochondrial import inner me	1.0	0.995	0.752	2e-86
449485826	226	PREDICTED: mitochondrial import inner me	1.0	0.995	0.752	3e-86
356558916	200	PREDICTED: mitochondrial import inner me	0.888	1.0	0.724	4e-86
356495857	200	PREDICTED: mitochondrial import inner me	0.88	0.99	0.713	4e-84
255546315	216	mitochondrial import inner membrane tran	0.951	0.990	0.775	2e-83
77416941	236	unknown [Solanum tuberosum]	0.995	0.949	0.763	6e-82
224102297	214	predicted protein [Populus trichocarpa]	0.951	1.0	0.768	3e-81
225445086	226	PREDICTED: mitochondrial import inner me	0.991	0.986	0.771	4e-81

>gi|356575929|ref|XP_003556088.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Glycine max]

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 167/227 (73%), Positives = 188/227 (82%), Gaps = 16/227 (7%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGGSAFHFLKG+YN+P G R++  +QAVR+NAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNAPRGARVVAASQAVRLNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           RVGGSFAVWGGLFS+FDC+MVYLRQKEDPWNSIFAGAATGGFLSMRQGL A+ARSA FGG
Sbjct: 61  RVGGSFAVWGGLFSSFDCTMVYLRQKEDPWNSIFAGAATGGFLSMRQGLPAAARSAAFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGS 180
           VLLALIEGAGIMLNK LS  Q MP+++DEP P            P GLPG P  VA +  
Sbjct: 121 VLLALIEGAGIMLNKFLSAQQPMPMIVDEPLP------------PNGLPGQP--VASAPD 166

Query: 181 SDSDSSWFGGWFGGGQKKEPA--TSGGSKTEILESFDAPPVPSFEYK 225
           + S SSW GGWFG G+K E A   +GGS+T++LESFDAPPVP+FEYK
Sbjct: 167 AASQSSWLGGWFGDGKKDEAAAEATGGSETKVLESFDAPPVPNFEYK 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126157|ref|XP_002329674.1| predicted protein [Populus trichocarpa] gi|222870555|gb|EEF07686.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/225 (79%), Positives = 192/225 (85%), Gaps = 4/225 (1%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRI+DD+GGAFGMGAVGGSAFHF+KG+YNSPSGTRL+GGTQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRIIDDIGGAFGMGAVGGSAFHFIKGVYNSPSGTRLIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           RVGGSFAVWGGLFS FDCSMVYLRQKEDPWNSI AGAATGGFLSMRQGLGAS RSA+FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCSMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGASGRSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGS 180
           VLLALIEGAGIMLNKV+S  Q MPIMI+  +PVP M GG   G P G P    Q   S S
Sbjct: 121 VLLALIEGAGIMLNKVMSAQQEMPIMIE--DPVPSMAGG--HGSPMGQPHAHAQEGASAS 176

Query: 181 SDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAPPVPSFEYK 225
             +  SWFGGWFGGG+K+  A   GSKTEILESFDAPPVP+FEYK
Sbjct: 177 GTNSGSWFGGWFGGGKKESEANISGSKTEILESFDAPPVPNFEYK 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435782|ref|XP_004135673.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Cucumis sativus]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/226 (75%), Positives = 187/226 (82%), Gaps = 1/226 (0%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGGSAFHFLKGIY+SP G+RLLGG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGIYSSPKGSRLLGGSQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           R+GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSI AGAATGGFL MRQG+GASARSA+FGG
Sbjct: 61  RIGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIIAGAATGGFLQMRQGVGASARSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGS 180
           VLLALIEGAGIMLNKVLS PQN PIMID+   + G+ G     IP   P      +   S
Sbjct: 121 VLLALIEGAGIMLNKVLSQPQNAPIMIDDAGAMAGVPGYPMDQIPGLTPPGTSSGSPGSS 180

Query: 181 SDSDSSWFGGWFGGGQKKE-PATSGGSKTEILESFDAPPVPSFEYK 225
                SWFGG FGGGQKK+  A  G  +T+ILESFD+PPVP+FE+K
Sbjct: 181 DAGSGSWFGGLFGGGQKKDSEANRGDGETKILESFDSPPVPNFEFK 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485826|ref|XP_004157284.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Cucumis sativus]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/226 (75%), Positives = 186/226 (82%), Gaps = 1/226 (0%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGGSAFHFLKGIY+SP G RLLGG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGIYSSPKGARLLGGSQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           R+GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSI AGAATGGFL MRQG+GASARSA+FGG
Sbjct: 61  RIGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIIAGAATGGFLQMRQGVGASARSALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGS 180
           VLLALIEGAGIMLNKVLS PQN PIMID+   + G+ G     IP   P      +   S
Sbjct: 121 VLLALIEGAGIMLNKVLSQPQNAPIMIDDAGAMAGVPGYPMDQIPGLTPPGTSSGSPGSS 180

Query: 181 SDSDSSWFGGWFGGGQKKE-PATSGGSKTEILESFDAPPVPSFEYK 225
                SWFGG FGGGQKK+  A  G  +T+ILESFD+PPVP+FE+K
Sbjct: 181 DAGSGSWFGGLFGGGQKKDSEANRGDGETKILESFDSPPVPNFEFK 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558916|ref|XP_003547748.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Glycine max]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 163/225 (72%), Positives = 178/225 (79%), Gaps = 25/225 (11%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGGSAFHFLKG+YNSP G R +G TQAVR+NAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNSPKGDRFVGATQAVRLNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           RVGGSFAVWGGLFS FDC+MVY RQKEDPWNSI AGAATGGFLSMRQGLGASARSA FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLSMRQGLGASARSAAFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGS 180
           VLLALIEGAGIMLNK LS  Q MP+++DEP+P P                          
Sbjct: 121 VLLALIEGAGIMLNKFLSAQQPMPMIMDEPQPQP-------------------------P 155

Query: 181 SDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAPPVPSFEYK 225
             S+  W GGWFGGG ++E A SGGS+T+ILESFDAPPVP+FEYK
Sbjct: 156 QSSEQPWLGGWFGGGNREETAGSGGSETKILESFDAPPVPNFEYK 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495857|ref|XP_003516788.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Glycine max]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 162/227 (71%), Positives = 177/227 (77%), Gaps = 29/227 (12%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGGSAFHFLKG+YNSP G R +G TQAVR+NAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNSPKGDRFVGATQAVRLNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           RVGGSFAVWGGLFS FDC+MVY RQKEDPWNSI AGAATGGFLSMRQGLGASARSA FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIVAGAATGGFLSMRQGLGASARSAAFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGS 180
           VLLALIEGAGIMLNK LS  Q MP+++DE  P                            
Sbjct: 121 VLLALIEGAGIMLNKFLSAQQPMPMIMDELPP---------------------------Q 153

Query: 181 SDSDSSWFGGWFGGGQKKEPATSG--GSKTEILESFDAPPVPSFEYK 225
           S ++ SW GGWFGGG K+E AT+   GS+T+ILESFDAPPVP+FEYK
Sbjct: 154 SSTEQSWLGGWFGGGNKEETATTAGSGSETKILESFDAPPVPNFEYK 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546315|ref|XP_002514217.1| mitochondrial import inner membrane translocase subunit tim17, putative [Ricinus communis] gi|223546673|gb|EEF48171.1| mitochondrial import inner membrane translocase subunit tim17, putative [Ricinus communis]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 176/227 (77%), Positives = 192/227 (84%), Gaps = 13/227 (5%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGGSAFHF+KGIYNSP+G RL+GGTQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGIYNSPTGARLIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           RVGGSFAVWGGLFS FDC+MVY RQKEDPWNSIFAGAATGGFLSMRQGLGASAR+A+FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYARQKEDPWNSIFAGAATGGFLSMRQGLGASARAALFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQ--VAES 178
           +LL LIEGAGIMLNKV+S  QNMP+MID+  P             AGLP  P Q   + S
Sbjct: 121 ILLGLIEGAGIMLNKVMSAQQNMPVMIDDSAPA-----------MAGLPSLPGQEPASTS 169

Query: 179 GSSDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAPPVPSFEYK 225
             S+S SSWFGGWFGGG+ +EP TS G KTEILESFDAPPVP+FEYK
Sbjct: 170 SGSESGSSWFGGWFGGGKTEEPITSKGGKTEILESFDAPPVPNFEYK 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77416941|gb|ABA81866.1| unknown [Solanum tuberosum]

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 181/237 (76%), Positives = 198/237 (83%), Gaps = 13/237 (5%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSP G RL+GGTQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPKGERLIGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           R+GGSFAVWGGLFSTFDC+MVYLRQKEDPWNSI AGAATGGFL MRQGLGA++RSA+FGG
Sbjct: 61  RIGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLQMRQGLGAASRSAMFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEP----VPGMVGGGPPGIPAG-LPGN-PVQ 174
           VLLALIEGAGIMLNKV+S PQN P M DEP P    VPG   G  PG P G LPG  PV 
Sbjct: 121 VLLALIEGAGIMLNKVMSAPQNFPPM-DEPLPNVPGVPGYPPGQLPGQPMGKLPGQAPVS 179

Query: 175 V------AESGSSDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAPPVPSFEYK 225
           +      + + SS S +SWFGG FGGG+K+E  +SGGSKT++LESFDAP  P+FEYK
Sbjct: 180 IDGMMTESSAPSSSSSTSWFGGLFGGGKKEETTSSGGSKTQVLESFDAPSPPTFEYK 236

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102297|ref|XP_002312627.1| predicted protein [Populus trichocarpa] gi|222852447|gb|EEE89994.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/225 (76%), Positives = 189/225 (84%), Gaps = 11/225 (4%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDD+GGAFGMGAVGGSAFHFLKG++NSPSG RL+GGTQAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGVHNSPSGARLMGGTQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           RVGGSFAVWGGLFS FDCSMVYLRQKEDPWNSI AGAATGGFLSMRQGLGASARSAVFGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCSMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGASARSAVFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAGLPGNPVQVAESGS 180
           VLL LIEGAGIMLNKV+   Q+MPIMIDE +P+P M G        G  G P+  A+ G 
Sbjct: 121 VLLGLIEGAGIMLNKVMGDQQSMPIMIDE-DPIPAMAG-------GGPGGFPMGQAQEGE 172

Query: 181 SDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAPPVPSFEYK 225
           S S      GWFGG +KK+ +T+  SKTE+LESFDAPPVP+FEYK
Sbjct: 173 SGSWFG---GWFGGEKKKKESTAASSKTEVLESFDAPPVPTFEYK 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445086|ref|XP_002283637.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Vitis vinifera]

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 176/228 (77%), Positives = 190/228 (83%), Gaps = 5/228 (2%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSP G R++GG+QAVRMNAP
Sbjct: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPKGERVIGGSQAVRMNAP 60

Query: 61  RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
           RVGGSFAVWGGLFS FDC+MVY+RQKEDPWNSI AGAATGGFL MRQGL AS RSA+FGG
Sbjct: 61  RVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLQMRQGLAASTRSAIFGG 120

Query: 121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEPEPVPGMVGGGPPGIPAG-LPG-NPVQVAES 178
           VLL LIEGAGIMLNKVLS PQN+P+ ++  EPVPGM  G   G P G LPG  P      
Sbjct: 121 VLLGLIEGAGIMLNKVLSAPQNLPMTME--EPVPGMTPGPVSGYPMGQLPGMTPPAPPAP 178

Query: 179 GSSDSDSSWFGGWFGGGQKKEPATSGGSKTEILESFDAP-PVPSFEYK 225
             S   SSWFGG FGGG+K+EPA + GSKTEILESFD P P+PSFEYK
Sbjct: 179 EPSSGSSSWFGGLFGGGKKQEPAANSGSKTEILESFDTPTPMPSFEYK 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2049771	243	TIM17-2 "AT2G37410" [Arabidops	0.635	0.588	0.776	3.3e-67
TAIR|locus:2012918	218	TIM17-1 "translocase inner mem	0.968	1.0	0.533	3.6e-57
FB|FBgn0263977	173	Tim17b [Drosophila melanogaste	0.626	0.815	0.489	8.5e-33
UNIPROTKB|F1NM85	166	TIMM17A "Uncharacterized prote	0.644	0.873	0.520	2.3e-32
MGI|MGI:1343131	171	Timm17a "translocase of inner	0.608	0.801	0.527	6e-32
UNIPROTKB|G3N1S8	171	TIMM17A "Uncharacterized prote	0.64	0.842	0.513	7.7e-32
UNIPROTKB|F1MS17	172	TIMM17B "Mitochondrial import	0.644	0.843	0.493	1.3e-31
UNIPROTKB|O60830	172	TIMM17B "Mitochondrial import	0.644	0.843	0.493	1.3e-31
UNIPROTKB|I3LVJ9	172	TIMM17B "Uncharacterized prote	0.644	0.843	0.493	1.3e-31
RGD|3862	171	Timm17a "translocase of inner	0.608	0.801	0.520	1.3e-31

TAIR|locus:2049771 TIM17-2 "AT2G37410" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
 Identities = 111/143 (77%), Positives = 120/143 (83%)

Query:     1 MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
             MGTPETSREPCPDRILDD               HF+KG YNSP G+R +GGTQ+V MNAP
Sbjct:     1 MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAP 60

Query:    61 RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
             R GGSFAVWGGLFSTFDC+MVYLRQKEDPWNSI AGAATGGFLSMRQG GA++RSA+FGG
Sbjct:    61 RTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGG 120

Query:   121 VLLALIEGAGIMLNKVLSGPQNM 143
             VLLALIEGAGIMLNKVL+ PQNM
Sbjct:   121 VLLALIEGAGIMLNKVLAQPQNM 143

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;TAS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0007067 "mitosis" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

TAIR|locus:2012918 TIM17-1 "translocase inner membrane subunit 17-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 120/225 (53%), Positives = 139/225 (61%)

Query:     1 MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
             MGTPE+SREPCPDRILDD               H ++GIYNSP G RL GG QA+RM+ P
Sbjct:     1 MGTPESSREPCPDRILDDVGGAFAMGAVGGSAYHLIRGIYNSPGGARLSGGVQALRMSGP 60

Query:    61 RVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGG 120
             R GGSF+VWGGL+STFDC++VY RQKEDPWNSI +GAATGGFLS+RQGLGASARSA+ GG
Sbjct:    61 RSGGSFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGASARSALVGG 120

Query:   121 VLLALIEGAGIMLNKVLSGPQNMPIMIDEXXXXXXXXXXXXXXXXXXXXXXXVQVAEXXX 180
             VLLA+IEG GIMLNKV S   N   M D                        V V E   
Sbjct:   121 VLLAMIEGVGIMLNKVQSTAHNEQFMEDHAATSLPYGMGQISGQS-------VPVPETSS 173

Query:   181 XXXXXXXXXXXXXXXQKKEPATSGGSKTEILESFDAPPVPSFEYK 225
                            +K+       S+T ILESFDAPPVP++E+K
Sbjct:   174 SSSGSVSWFGSLFKKKKETEDHHSESRTHILESFDAPPVPTYEFK 218

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;TAS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009693 "ethylene biosynthetic process" evidence=RCA

FB|FBgn0263977 Tim17b [Drosophila melanogaster (taxid:7227)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 70/143 (48%), Positives = 93/143 (65%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  N+PSG   RL+G   A++  +P +
Sbjct:     3 EYAREPCPYRIVDDCGGAFAMGCIGGGVFQAIKGFRNAPSGLNRRLVGSIIAIKTRSPVI 62

Query:    63 GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
              G+FAVWGG+FST DC++V+ R+KEDPWNSI +GAATGG L+ R G+ A A SA+ GGVL
Sbjct:    63 AGNFAVWGGMFSTIDCTLVHFRKKEDPWNSIISGAATGGILAARNGVPAMAGSAIIGGVL 122

Query:   123 LALIEGAGIMLNKVLSGPQNMPI 145
             LALIEG GI+  ++ +     PI
Sbjct:   123 LALIEGVGILFTRISADQFKNPI 145

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1NM85 TIMM17A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 77/148 (52%), Positives = 90/148 (60%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  NSP G   RL G   AV+  AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGAIGGGIFQAIKGFRNSPVGVNHRLRGSLAAVKTRAPQL 62

Query:    63 GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
             GGSFAVWGGLFS  DCSMV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+L
Sbjct:    63 GGSFAVWGGLFSMIDCSMVRMRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query:   123 LALIEGAGIMLNKVLSGP-QNMPIMIDE 149
             LALIEGAGI+L +  S   QN P   D+
Sbjct:   123 LALIEGAGILLTRFASAQFQNGPQFSDD 150

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

MGI|MGI:1343131 Timm17a "translocase of inner mitochondrial membrane 17a" [Mus musculus (taxid:10090)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 76/144 (52%), Positives = 88/144 (61%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
             E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQL 62

Query:    63 GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
             GGSFAVWGGLFST DCSMV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query:   123 LALIEGAGIMLNKVLS-----GPQ 141
             LALIEGAGI+L +  S     GPQ
Sbjct:   123 LALIEGAGILLTRFASAQFPNGPQ 146

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|G3N1S8 TIMM17A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 76/148 (51%), Positives = 88/148 (59%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  NSP G   RL G   A++  AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query:    63 GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
             GGSFAVWGGLFS  DCSMV +R KEDPWNSI +GA TG  L+ R G  A   SA  GGVL
Sbjct:    63 GGSFAVWGGLFSMIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAVGGVL 122

Query:   123 LALIEGAGIMLNKVLSG--PQNMPIMID 148
             LALIEGAGI+L +  S   P   P   D
Sbjct:   123 LALIEGAGILLTRFASAQFPNGPPFAED 150

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1MS17 TIMM17B "Mitochondrial import inner membrane translocase subunit Tim17-B" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 73/148 (49%), Positives = 92/148 (62%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTR--LLGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQI 62

Query:    63 GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
             GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  A   SA+ GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query:   123 LALIEGAGIMLNKVLSGP-QNMPIMIDE 149
             LALIEG GI+L +  +   +N P  +++
Sbjct:   123 LALIEGVGILLTRYTAQQFRNAPPFLED 150

GO:0016021 "integral to membrane" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|O60830 TIMM17B "Mitochondrial import inner membrane translocase subunit Tim17-B" [Homo sapiens (taxid:9606)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 73/148 (49%), Positives = 92/148 (62%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTR--LLGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQI 62

Query:    63 GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
             GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  A   SA+ GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query:   123 LALIEGAGIMLNKVLSGP-QNMPIMIDE 149
             LALIEG GI+L +  +   +N P  +++
Sbjct:   123 LALIEGVGILLTRYTAQQFRNAPPFLED 150

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0031305 "integral to mitochondrial inner membrane" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|I3LVJ9 TIMM17B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 73/148 (49%), Positives = 92/148 (62%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGTR--LLGGTQAVRMNAPRV 62
             E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSVNAVRIRAPQI 62

Query:    63 GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
             GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  A   SA+ GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGIL 122

Query:   123 LALIEGAGIMLNKVLSGP-QNMPIMIDE 149
             LALIEG GI+L +  +   +N P  +++
Sbjct:   123 LALIEGVGILLTRYTAQQFRNAPPFLED 150

GO:0016021 "integral to membrane" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

RGD|3862 Timm17a "translocase of inner mitochondrial membrane 17 homolog A (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 75/144 (52%), Positives = 87/144 (60%)

Query:     5 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGIYNSPSGT--RLLGGTQAVRMNAPRV 62
             E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++
Sbjct:     3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQL 62

Query:    63 GGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL 122
             GGSFAVWGGLFST DC MV +R KEDPWNSI +GA TG  L+ R G  A   SA  GG+L
Sbjct:    63 GGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122

Query:   123 LALIEGAGIMLNKVLS-----GPQ 141
             LALIEGAGI+L +  S     GPQ
Sbjct:   123 LALIEGAGILLTRFASAQFPNGPQ 146

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA;ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O60830	TI17B_HUMAN	No assigned EC number	0.5333	0.72	0.9418	yes	no
Q9SP35	TI172_ARATH	No assigned EC number	0.6544	0.9866	0.9135	yes	no
Q2HJE9	TI17B_BOVIN	No assigned EC number	0.5272	0.72	0.9418	yes	no
Q9Z0V7	TI17B_MOUSE	No assigned EC number	0.5243	0.7155	0.9360	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	6e-65
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	2e-50
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	5e-39
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	4e-13
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	1e-06

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score =  198 bits (505), Expect = 6e-65
 Identities = 74/129 (57%), Positives = 98/129 (75%)

Query: 7   SREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSF 66
           SREPCPDRI++D+GGAF MG +GG  +HFLKG+ NSP G R  GG   +R  AP +GG+F
Sbjct: 7   SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNF 66

Query: 67  AVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALI 126
           A+WGGLFSTFDC++ YLR KED WN+I +G  TGG L++R G  ++ R+A+FGG+LL +I
Sbjct: 67  AIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGII 126

Query: 127 EGAGIMLNK 135
           E   I +N+
Sbjct: 127 ELVSIGMNR 135

Length = 164

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score =  161 bits (408), Expect = 2e-50
 Identities = 78/160 (48%), Positives = 103/160 (64%), Gaps = 2/160 (1%)

Query: 5   ETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGG 64
           E +REPCP RILDD GGAF MG +GGS F   KG  NSP G +L+G  +A++  AP +GG
Sbjct: 3   EYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGG 62

Query: 65  SFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLA 124
           +FAVWGGLFST DC++V +R+KEDPWNSI +G  TG  L++R G  A   SA+ G  +LA
Sbjct: 63  NFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILA 122

Query: 125 LIEGAGIMLNKVLSG--PQNMPIMIDEPEPVPGMVGGGPP 162
           +IEG G++L +  +       P   D+P  +P      P 
Sbjct: 123 VIEGVGLVLTRWAAAQMDPTAPEAPDDPSSLPQSAQAEPG 162

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score =  130 bits (330), Expect = 5e-39
 Identities = 60/128 (46%), Positives = 72/128 (56%), Gaps = 4/128 (3%)

Query: 10  PCPDRILDDVGGAFGMGAVGGSAFHFLKGIYN----SPSGTRLLGGTQAVRMNAPRVGGS 65
           PCP+RI+ D GG F MGAV G  F    G+ N     P   RL G   A     P  G +
Sbjct: 1   PCPERIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNN 60

Query: 66  FAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLAL 125
           FAV+GGL+S  +C++  LR KEDPWNSI AGA TG  L +R G  A+A  A  G    A 
Sbjct: 61  FAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAAAVGAAVGAAFSAA 120

Query: 126 IEGAGIML 133
           IEG G +L
Sbjct: 121 IEGLGKLL 128

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 45/153 (29%), Positives = 60/153 (39%), Gaps = 10/153 (6%)

Query: 1   MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAP 60
           + +PE  R+PCP   L D   AF    +G SA   LKG                      
Sbjct: 21  ILSPEE-RDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVH 79

Query: 61  RVGGSFA-VWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFG 119
            +G +F  VWGGLFST DC+   L+ KE   N+   G  TG  L +   + A   S +  
Sbjct: 80  LLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITA 139

Query: 120 GV-------LLALIEGAGIMLNKVLSGPQNMPI 145
                     +A     G       +GPQ MP+
Sbjct: 140 LRAKHDIANAIAAGAFTG-AALASSAGPQAMPM 171

Length = 191

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 19  VGGAFGMGAVGGSAFHFLKGIYNSPSGT----RLLGGTQAVRMNAPRVGGSFAVWGGLFS 74
            G  +  G   G+      G+  + S      RL      V    P  G +  +   +++
Sbjct: 38  TGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYN 97

Query: 75  TFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLA 124
             +  +   R K D +NS+ AGA TG      +GL   ARS   G     
Sbjct: 98  GINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAG 147

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PTZ00236	164	mitochondrial import inner membrane translocase su	100.0
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	100.0
KOG1652	183	consensus Mitochondrial import inner membrane tran	100.0
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.95
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.91
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.83
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.79
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.52
KOG4608	270	consensus Uncharacterized conserved protein [Funct	97.9
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	97.8
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	94.83
KOG4096	75	consensus Uncharacterized conserved protein [Funct	92.98
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	92.31
KOG1398	460	consensus Uncharacterized conserved protein [Funct	84.09

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=100.00  E-value=3.4e-43  Score=295.12  Aligned_cols=142  Identities=52%  Similarity=0.989  Sum_probs=137.3

Q ss_pred             CCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhh
Q 027316            4 PETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYL   83 (225)
Q Consensus         4 ~~~~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~   83 (225)
                      -||+|||||+||+||+|++|.||+++|++|||++|+||+|.++|+++.++.+++++++++++||+||++|+++||+++++
T Consensus         4 ~~~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~   83 (164)
T PTZ00236          4 RDLSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYL   83 (164)
T ss_pred             hhhCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 027316           84 RQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPI  145 (225)
Q Consensus        84 RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~~~~~~  145 (225)
                      |+|||+||+++|||+||++|++|+|++++++++++|++++++||+++++++|++++++.+++
T Consensus        84 R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~~~~~~~~  145 (164)
T PTZ00236         84 RGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQMRTPRQQF  145 (164)
T ss_pred             HccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999998765433

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=100.00  E-value=7.4e-42  Score=288.61  Aligned_cols=139  Identities=53%  Similarity=0.980  Sum_probs=135.7

Q ss_pred             CCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhh
Q 027316            4 PETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYL   83 (225)
Q Consensus         4 ~~~~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~   83 (225)
                      -||+|||||+|++|++|.+|.||+++|++||+++|++|+|.++|++++++++++++++++++||+|+++|+++||+++++
T Consensus         2 ~~~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~   81 (170)
T TIGR00980         2 EEYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAI   81 (170)
T ss_pred             cccccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027316           84 RQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQN  142 (225)
Q Consensus        84 RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~~~  142 (225)
                      |+|||+||+++|||+||++|++|+|+++++.+++++++++++||+++|+++|+++++++
T Consensus        82 R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~~~~~~~~~~~~  140 (170)
T TIGR00980        82 RKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGLVLTRWAAAQMD  140 (170)
T ss_pred             hcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999998753

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-41  Score=283.71  Aligned_cols=144  Identities=58%  Similarity=1.013  Sum_probs=139.1

Q ss_pred             CCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHh
Q 027316            3 TPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVY   82 (225)
Q Consensus         3 ~~~~~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~   82 (225)
                      +.||+|+|||+|+++|+|.+|.||++.|.+|++++|++|+|.|.|+.+.++.++++++..|++||+||++||.+||++++
T Consensus         1 ~~e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~   80 (183)
T KOG1652|consen    1 MMEYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVA   80 (183)
T ss_pred             CCcccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccccchhhhhccCcccccceeeeechhhHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 027316           83 LRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGPQNMPIM  146 (225)
Q Consensus        83 ~RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~~~~~~~  146 (225)
                      +|+|||+||+|++||+||++|+.|.|+++++++|++++++++++|+++++++|+.+++.++..+
T Consensus        81 ~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g~~~t~~~a~~~~~~~~  144 (183)
T KOG1652|consen   81 IRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLGIQVTKIAASQFRNQQP  144 (183)
T ss_pred             HhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCC
Confidence            9999999999999999999999999999999999999999999999999999999998654433

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.95  E-value=3.7e-28  Score=201.57  Aligned_cols=119  Identities=22%  Similarity=0.278  Sum_probs=111.5

Q ss_pred             CCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCC----CCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHh
Q 027316            7 SREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPS----GTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVY   82 (225)
Q Consensus         7 ~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~----g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~   82 (225)
                      .+..|-|+++..+|.+|+||++.|+++|+++|++++|.    ++|+++++|.+++++++++++||+|+++|+++||.+++
T Consensus        26 ~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~  105 (149)
T TIGR00983        26 PSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEA  105 (149)
T ss_pred             CCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788888899999999999999999999999864    46899999999999999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHH
Q 027316           83 LRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLAL  125 (225)
Q Consensus        83 ~RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al  125 (225)
                      +|+|||+||+++|||+||++|++++|+|+++.++++|++++++
T Consensus       106 ~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~  148 (149)
T TIGR00983       106 TRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGV  148 (149)
T ss_pred             HhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhc
Confidence            9999999999999999999999999999999999999988875

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.91  E-value=2.6e-24  Score=170.74  Aligned_cols=121  Identities=40%  Similarity=0.677  Sum_probs=111.3

Q ss_pred             CCCchhhhhhhhHHHHHHHHHHHHHHHHhh----hcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhc
Q 027316           10 PCPDRILDDVGGAFGMGAVGGSAFHFLKGI----YNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQ   85 (225)
Q Consensus        10 pCp~ri~d~iG~af~mG~v~G~~~g~~~G~----~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~Rg   85 (225)
                      ||++|++++++.++.+|++.|++.+++++.    ++.|.++|++..++.+++++++.+.+||.++++|+++||.++++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            799999999999999999999999999664    3445555788999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHH
Q 027316           86 KEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAG  130 (225)
Q Consensus        86 KdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag  130 (225)
                      |||+||+++||++||++++.+.|++.++.++++++++.++++..+
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~  125 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYG  125 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998764

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.6e-20  Score=161.38  Aligned_cols=128  Identities=23%  Similarity=0.266  Sum_probs=117.2

Q ss_pred             CCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCC----CCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhh
Q 027316            8 REPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSP----SGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYL   83 (225)
Q Consensus         8 r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP----~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~   83 (225)
                      +.-|-|..+..+|.+|..|++.|++.|++.|++|.+    .|.|+++++|.++++++.++++.++++.+|+++|..+++.
T Consensus        70 ~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~  149 (206)
T KOG3324|consen   70 RRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEAT  149 (206)
T ss_pred             ccchhhhhheeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHh
Confidence            445778888899999999999999999999999875    3568999999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027316           84 RQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNK  135 (225)
Q Consensus        84 RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r  135 (225)
                      |+|||+||+++||++||++|++.+|+|++++++++++++.+++....-.+.|
T Consensus       150 R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~aw~l~k~~~~~  201 (206)
T KOG3324|consen  150 RGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAAWTLGKRIVKR  201 (206)
T ss_pred             hccccchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence            9999999999999999999999999999999999999999988766544444

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=5.2e-20  Score=153.68  Aligned_cols=111  Identities=28%  Similarity=0.376  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHhhhc----CCCCCcc---chHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHH
Q 027316           23 FGMGAVGGSAFHFLKGIYN----SPSGTRL---LGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFA   95 (225)
Q Consensus        23 f~mG~v~G~~~g~~~G~~n----sP~g~R~---~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiA   95 (225)
                      .++|...|.++|+|.+..+    .|+-.|+   .+.+..+.++..+.+++|+++|++|+++||++|++|.|+|++|.+++
T Consensus        50 gV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~Ngaia  129 (168)
T KOG3225|consen   50 GVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIA  129 (168)
T ss_pred             hccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceee
Confidence            3788888999999988876    2422232   23333344566667999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 027316           96 GAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKVLSGP  140 (225)
Q Consensus        96 G~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~~~~~  140 (225)
                      ||+||+.++.|+||++    +++||++|++++++   +.|+|++.
T Consensus       130 G~vtGg~l~~raGp~a----~~~G~agfa~fS~~---id~y~~~~  167 (168)
T KOG3225|consen  130 GCVTGGSLGYRAGPKA----AAIGCAGFAAFSAA---IDKYMRGR  167 (168)
T ss_pred             eeeeccchhhcccchh----hhhchhHHHHHHHH---HHHhhhcC
Confidence            9999999999999999    78999999999866   89998763

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.1e-15  Score=130.56  Aligned_cols=126  Identities=29%  Similarity=0.320  Sum_probs=103.2

Q ss_pred             CCCCCCCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCC-----------------------------------
Q 027316            1 MGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSG-----------------------------------   45 (225)
Q Consensus         1 ~~~~~~~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g-----------------------------------   45 (225)
                      |-||| +|+||+..++.+++.+|-++.+.+.+++-++|.++.+..                                   
T Consensus        21 ~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~   99 (191)
T COG5596          21 ILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCT   99 (191)
T ss_pred             ccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccc
Confidence            34778 999999999999999999999999999999999875311                                   


Q ss_pred             ---CccchHHHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHH
Q 027316           46 ---TRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVL  122 (225)
Q Consensus        46 ---~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~  122 (225)
                         .|++..++-+.++++.++++|+++|.+|.+.||+++.+|+|||+.|++.+|+.||+.|+.+.|++++..+...-+++
T Consensus       100 ~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~  179 (191)
T COG5596         100 PFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAF  179 (191)
T ss_pred             hHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhh
Confidence               12233334456678889999999999999999999999999999999999999999999999999965544444444


Q ss_pred             HHHHH
Q 027316          123 LALIE  127 (225)
Q Consensus       123 ~al~e  127 (225)
                      .+.++
T Consensus       180 s~~~~  184 (191)
T COG5596         180 SAGIT  184 (191)
T ss_pred             hhhHH
Confidence            44433

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=2e-06  Score=76.88  Aligned_cols=86  Identities=23%  Similarity=0.292  Sum_probs=74.2

Q ss_pred             HHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027316           55 VRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLN  134 (225)
Q Consensus        55 v~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~  134 (225)
                      +.|.+-+.|-..|++...|-++...+..+|+|+|.||-++||.+||+++.+.-|++-++...++|+++-+...+.-..+.
T Consensus       127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~lG~tv~~~l~l~q  206 (270)
T KOG4608|consen  127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGALLGTTVGGLLMLFQ  206 (270)
T ss_pred             HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehhhcchHHHHHHHHH
Confidence            44556667778899999999999999999999999999999999999999999999888888888888888887777777


Q ss_pred             HhhcCC
Q 027316          135 KVLSGP  140 (225)
Q Consensus       135 r~~~~~  140 (225)
                      +....+
T Consensus       207 ~a~~k~  212 (270)
T KOG4608|consen  207 KASGKT  212 (270)
T ss_pred             HHhCCc
Confidence            666554

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=2.7e-06  Score=73.27  Aligned_cols=123  Identities=25%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             hhhhhHHHHHHHHHHHHH-HHHhhhcCCCCCccchHHHHH-------HhhccchhhHHH-HHHHHHHhHHhHHHhhhccC
Q 027316           17 DDVGGAFGMGAVGGSAFH-FLKGIYNSPSGTRLLGGTQAV-------RMNAPRVGGSFA-VWGGLFSTFDCSMVYLRQKE   87 (225)
Q Consensus        17 d~iG~af~mG~v~G~~~g-~~~G~~nsP~g~R~~g~~~av-------~~~gp~~g~sFA-~~Gglfs~~ec~l~~~RgKd   87 (225)
                      |.|...-++++--.-.++ +.+....+.+|-|+-.....+       +...+..+.+|+ +||++++.++|+..++|.|+
T Consensus        28 d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~  107 (191)
T COG5596          28 DPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKE  107 (191)
T ss_pred             CchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhh
Confidence            344444444433333332 233334555665554332222       234556689998 99999999999999999999


Q ss_pred             ChhHHHHHHHHHHhhhhcccChhHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcC
Q 027316           88 DPWNSIFAGAATGGFLSMRQGLGASARSAVF-------GGVLLALIEGAGIMLNKVLSG  139 (225)
Q Consensus        88 D~wNsiiAG~aTGail~~r~G~~a~~~sAl~-------Gga~~al~egag~~l~r~~~~  139 (225)
                      |.||....|++||..++.+..+.+-..+.|.       ..-..++.++.|.++.+.-.+
T Consensus       108 ~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~  166 (191)
T COG5596         108 QLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGP  166 (191)
T ss_pred             ccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccc
Confidence            9999999999999999998887766666666       223334445556666655443

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=94.83  E-value=0.41  Score=37.66  Aligned_cols=121  Identities=17%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhhcC-CCCCccchH---HHHHHhhccchhhHHHHHHHHHHhHHhHHHhhhccCChhH
Q 027316           16 LDDVGGAFGMGAVGGSAFHFLKGIYNS-PSGTRLLGG---TQAVRMNAPRVGGSFAVWGGLFSTFDCSMVYLRQKEDPWN   91 (225)
Q Consensus        16 ~d~iG~af~mG~v~G~~~g~~~G~~ns-P~g~R~~g~---~~av~~~gp~~g~sFA~~Gglfs~~ec~l~~~RgKdD~wN   91 (225)
                      .+++-.....|++.|.++|.+.+.+.. +...+....   ++.+-+...+-+..++..-+.|.++-+.++.+=++-=-.|
T Consensus         3 ~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~   82 (128)
T PF02466_consen    3 PERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKD   82 (128)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            356667788999999999999998865 322222222   2222222222345588888888888888887766533568


Q ss_pred             HHHHHHHHHhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027316           92 SIFAGAATGGFLSMRQGLGASARSAVFGGVLLALIEGAGIMLNKV  136 (225)
Q Consensus        92 siiAG~aTGail~~r~G~~a~~~sAl~Gga~~al~egag~~l~r~  136 (225)
                      -.+-.+++|++-+.--+.+.-.+..+.++++++++..+-..++|+
T Consensus        83 D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~  127 (128)
T PF02466_consen   83 DPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM  127 (128)
T ss_pred             ccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999998888888999999999999988775555443

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=0.08  Score=39.60  Aligned_cols=70  Identities=20%  Similarity=0.362  Sum_probs=45.0

Q ss_pred             CCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCCccchHHHHHHhhccchhhHHHHHHHHHHhHHhH
Q 027316            7 SREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPSGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDCS   79 (225)
Q Consensus         7 ~r~pCp~ri~d~iG~af~mG~v~G~~~g~~~G~~nsP~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec~   79 (225)
                      ++.+|.+|+..-+-.++.+|...|.+||-++.+|.-|.++   ..++.+.+..-.-+++|+.+=++=+.++|.
T Consensus         3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~---~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen    3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGR---GLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChh---HHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            5677888887766555555666666666666666545443   344455555444478888877777777765

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=92.31  E-value=0.26  Score=36.26  Aligned_cols=63  Identities=25%  Similarity=0.368  Sum_probs=37.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhhcCC-CCCccchHHHHHHhhccchhhHHHHHHHHHHhHHh
Q 027316           16 LDDVGGAFGMGAVGGSAFHFLKGIYNSP-SGTRLLGGTQAVRMNAPRVGGSFAVWGGLFSTFDC   78 (225)
Q Consensus        16 ~d~iG~af~mG~v~G~~~g~~~G~~nsP-~g~R~~g~~~av~~~gp~~g~sFA~~Gglfs~~ec   78 (225)
                      +|.+..++.||...|.+.|++-|.++.- .+.|-+..++.+.+..-..+.+|+.+=++=+.++|
T Consensus         4 ~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc   67 (67)
T PF10247_consen    4 FDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC   67 (67)
T ss_pred             HHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence            4455666777777777777776666543 33344455666666555556777766555444443

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG1398 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.09  E-value=1.3  Score=42.71  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=38.5

Q ss_pred             hhhHHHHHHHHHHhHHhHHHhhhccCChhHHHHHHHHHHhhhhcc
Q 027316           62 VGGSFAVWGGLFSTFDCSMVYLRQKEDPWNSIFAGAATGGFLSMR  106 (225)
Q Consensus        62 ~g~sFA~~Gglfs~~ec~l~~~RgKdD~wNsiiAG~aTGail~~r  106 (225)
                      ++.-.+.+-++|.++.|++.+++.+||..|+++||.+++--+...
T Consensus       302 lg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy  346 (460)
T KOG1398|consen  302 LGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY  346 (460)
T ss_pred             hhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence            455568888999999999999999999999999999988655543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00