Citrus Sinensis ID: 027323

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
METQQQQQQAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR
cccHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHcccEEEEEcccccccccccccccccEEEcccHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHccccccccccccccHHHHHHccccccccccc
cccccccHHHHHcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHcccEEEEEEcHHHcHHHHccccccEEEEEccHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHcccccHHHHcEEEEcccHHHHHHHHHHcccccccccccccHHHHHHccccccccccc
METQQQQQQAAAALKSRFKRVCVfcgsspgkspsyQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAvydggrhvlgvipktlmpreitgdtVGEVKAVSGMHQRKAEMARQADAFIalpggygtLEELLEVITWAQlgihdkpvgllnVDGYYNSLLSFIDKAvdegfiapAARYIIVSAQTAHELICKLeeyvpkhsgvasnLSWEMEQQlgytnksdiar
METQQQQQQAAAALKSRFKRVCVFCGsspgkspsYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVipktlmpreitGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVasnlswemeqqlgytnksdiar
METqqqqqqaaaaLKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR
***************SRFKRVCVFCGSS****PSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVS*********ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSW****************
********************VCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQ*L**********
***************SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR
****************RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGY********
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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METQQQQQQAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
B9F166244 Probable cytokinin ribosi yes no 0.995 0.918 0.748 9e-95
Q8RUN2213 Cytokinin riboside 5'-mon yes no 0.937 0.990 0.768 4e-94
Q8L8B8215 Cytokinin riboside 5'-mon no no 0.911 0.953 0.786 2e-93
Q8GW29217 Cytokinin riboside 5'-mon no no 0.933 0.967 0.780 2e-93
Q0JBP5250 Probable cytokinin ribosi yes no 0.951 0.856 0.758 3e-93
Q9LFH3215 Cytokinin riboside 5'-mon no no 0.924 0.967 0.760 3e-91
Q7XDB8204 Probable cytokinin ribosi no no 0.897 0.990 0.788 5e-88
Q8H7U8211 Probable cytokinin ribosi no no 0.871 0.928 0.795 3e-87
Q5BPS0213 Cytokinin riboside 5'-mon no no 0.871 0.920 0.739 1e-84
Q0DFG8266 Probable cytokinin ribosi no no 0.862 0.729 0.751 2e-83
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1 Back     alignment and function desciption
 Score =  346 bits (887), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 191/227 (84%), Gaps = 3/227 (1%)

Query: 1   METQQQQQQAAAAL--KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGG 58
           ME + ++  A  A+  +SRF+RVCVFCGSS GK   YQ AAI+LGK+LV RNIDLVYGGG
Sbjct: 1   MEIKDEETTAEVAMVVQSRFRRVCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGG 60

Query: 59  SIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAF 118
           S+GLMGLVSQAV++GGRHV+GVIPKTLMPREI+G+TVGEVKAVS MHQRKAEMARQ+DAF
Sbjct: 61  SVGLMGLVSQAVHNGGRHVIGVIPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAF 120

Query: 119 IALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY 178
           IALPGGYGTLEELLEVI WAQLGIHDKPVGLLNVDGYYN LLSFIDKAV+EGFI P+AR+
Sbjct: 121 IALPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARH 180

Query: 179 IIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR 225
           IIV A T  ELI KLEEY P+H  V S + WEME Q+ Y    DI R
Sbjct: 181 IIVLAPTPKELIEKLEEYSPQHEKVVSKMKWEME-QMSYPQNYDIPR 226
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1 Back     alignment and function description
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2 Back     alignment and function description
>sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1 Back     alignment and function description
>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1 Back     alignment and function description
>sp|Q8H7U8|LOGL3_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica GN=LOGL3 PE=2 SV=1 Back     alignment and function description
>sp|Q5BPS0|LOG2_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1 Back     alignment and function description
>sp|Q0DFG8|LOGL8_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL8 OS=Oryza sativa subsp. japonica GN=LOGL8 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
224082988222 predicted protein [Populus trichocarpa] 0.986 1.0 0.884 1e-111
255538900224 carboxy-lyase, putative [Ricinus communi 0.942 0.946 0.915 1e-111
225458018216 PREDICTED: cytokinin riboside 5'-monopho 0.942 0.981 0.919 1e-110
449470108232 PREDICTED: cytokinin riboside 5'-monopho 0.991 0.961 0.843 1e-107
340248744224 cytokinin riboside 5'-monophosphate phos 0.933 0.937 0.890 1e-107
356518038221 PREDICTED: probable cytokinin riboside 5 0.982 1.0 0.835 1e-107
356509634221 PREDICTED: probable cytokinin riboside 5 0.982 1.0 0.831 1e-107
449530446232 PREDICTED: cytokinin riboside 5'-monopho 0.937 0.909 0.876 1e-106
357466909221 Carboxy-lyase [Medicago truncatula] gi|3 0.982 1.0 0.822 1e-105
358249070215 uncharacterized protein LOC100814612 [Gl 0.955 1.0 0.832 1e-103
>gi|224082988|ref|XP_002306920.1| predicted protein [Populus trichocarpa] gi|222856369|gb|EEE93916.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/225 (88%), Positives = 210/225 (93%), Gaps = 3/225 (1%)

Query: 1   METQQQQQQAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSI 60
           ME QQQ+Q    ++KSRF+RVCVFCGSSPGK+P+YQ AAIQLGKQLVERNIDLVYGGGSI
Sbjct: 1   MENQQQRQ---PSMKSRFRRVCVFCGSSPGKNPNYQHAAIQLGKQLVERNIDLVYGGGSI 57

Query: 61  GLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIA 120
           GLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIA
Sbjct: 58  GLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIA 117

Query: 121 LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180
           LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFI PAAR+II
Sbjct: 118 LPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFITPAARHII 177

Query: 181 VSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR 225
           VSA TA EL+C LE+Y  +HSGVAS LSWEM QQLGYT KSDI+R
Sbjct: 178 VSANTAQELMCLLEDYEAEHSGVASKLSWEMGQQLGYTVKSDISR 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538900|ref|XP_002510515.1| carboxy-lyase, putative [Ricinus communis] gi|223551216|gb|EEF52702.1| carboxy-lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225458018|ref|XP_002276775.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Vitis vinifera] gi|302142639|emb|CBI19842.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449470108|ref|XP_004152760.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|340248744|dbj|BAK52670.1| cytokinin riboside 5'-monophosphate phosphoribohydrolase [Petunia x hybrida] Back     alignment and taxonomy information
>gi|356518038|ref|XP_003527691.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6-like [Glycine max] Back     alignment and taxonomy information
>gi|356509634|ref|XP_003523551.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6-like [Glycine max] Back     alignment and taxonomy information
>gi|449530446|ref|XP_004172206.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357466909|ref|XP_003603739.1| Carboxy-lyase [Medicago truncatula] gi|355492787|gb|AES73990.1| Carboxy-lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|358249070|ref|NP_001239732.1| uncharacterized protein LOC100814612 [Glycine max] gi|255646823|gb|ACU23883.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TAIR|locus:2828223213 LOG1 "AT2G28305" [Arabidopsis 0.937 0.990 0.768 6.2e-85
TAIR|locus:2164280217 LOG7 "AT5G06300" [Arabidopsis 0.933 0.967 0.780 2.1e-84
TAIR|locus:2084051215 LOG4 "AT3G53450" [Arabidopsis 0.911 0.953 0.776 2.2e-82
TAIR|locus:2039175213 LOG2 "AT2G35990" [Arabidopsis 0.871 0.920 0.739 6.3e-76
UNIPROTKB|Q5ZC82242 LOG "Cytokinin riboside 5'-mon 0.826 0.768 0.779 1.3e-75
TAIR|locus:2143473201 LOG6 "AT5G03270" [Arabidopsis 0.822 0.920 0.789 3.1e-74
TAIR|locus:2132821228 LOG5 "AT4G35190" [Arabidopsis 0.897 0.885 0.698 2.5e-72
TAIR|locus:2143029216 LOG8 "LONELY GUY 8" [Arabidops 0.893 0.930 0.653 1.8e-69
TIGR_CMR|GSU_2766196 GSU_2766 "decarboxylase family 0.848 0.974 0.494 1.1e-46
TIGR_CMR|BA_5294192 BA_5294 "decarboxylase family 0.791 0.927 0.488 2.8e-43
TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 163/212 (76%), Positives = 190/212 (89%)

Query:    14 LKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDG 73
             ++S+FKR+CVFCGSS G   SY+ AAI+LG +LV RNIDLVYGGGSIGLMGL+SQAV++G
Sbjct:     3 IESKFKRICVFCGSSAGNKVSYKDAAIELGTELVSRNIDLVYGGGSIGLMGLISQAVFNG 62

Query:    74 GRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLE 133
             GRHV+GVIPKTLMPREITG+TVGEVKAV+ MHQRKAEMA+ +DAFIALPGGYGTLEELLE
Sbjct:    63 GRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 122

Query:   134 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 193
             VITWAQLGIHDKPVGLLNV+GYYNSLLSFIDKAV+EGFI+P AR+IIVSA +A EL+ KL
Sbjct:   123 VITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVSAPSAKELVKKL 182

Query:   194 EEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR 225
             E+YVP+H  VAS  SWEMEQ +G +   +I+R
Sbjct:   183 EDYVPRHEKVASKKSWEMEQ-IGLSPTCEISR 213
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2143473 LOG6 "AT5G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132821 LOG5 "AT4G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143029 LOG8 "LONELY GUY 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5294 BA_5294 "decarboxylase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XDB8LOGLA_ORYSJ3, ., 2, ., 2, ., n, 10.78810.89770.9901nono
Q8L8B8LOG3_ARATH3, ., 2, ., 2, ., n, 10.78640.91110.9534nono
Q8RUN2LOG1_ARATH3, ., 2, ., 2, ., n, 10.76880.93770.9906yesno
Q5ZC82LOG_ORYSJ3, ., 2, ., 2, ., n, 10.70420.92440.8595nono
Q8GW29LOG7_ARATH3, ., 2, ., 2, ., n, 10.78090.93330.9677nono
Q8H7U8LOGL3_ORYSJ3, ., 2, ., 2, ., n, 10.79590.87110.9289nono
Q9LYV8LOG6_ARATH3, ., 2, ., 2, ., n, 10.740.88880.9950nono
Q9LFH3LOG4_ARATH3, ., 2, ., 2, ., n, 10.76050.92440.9674nono
Q8LBB7LOG5_ARATH3, ., 2, ., 2, ., n, 10.70140.89330.8815nono
P48636Y4923_PSEAENo assigned EC number0.51090.80880.9333yesno
Q0JBP5LOGL6_ORYSJ3, ., 2, ., 2, ., n, 10.75810.95110.856yesno
B9F166LOGL2_ORYSJ3, ., 2, ., 2, ., n, 10.74880.99550.9180yesno
Q5BPS0LOG2_ARATH3, ., 2, ., 2, ., n, 10.73970.87110.9201nono
Q84M85LOGL5_ORYSJ3, ., 2, ., 2, ., n, 10.71880.93330.8536nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.n10.979
3rd Layer3.2.20.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
pfam03641130 pfam03641, Lysine_decarbox, Possible lysine decarb 2e-65
TIGR00730178 TIGR00730, TIGR00730, TIGR00730 family protein 4e-59
COG1611205 COG1611, COG1611, Predicted Rossmann fold nucleoti 2e-54
TIGR00725159 TIGR00725, TIGR00725, TIGR00725 family protein 3e-09
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase Back     alignment and domain information 
 Score =  198 bits (505), Expect = 2e-65
 Identities = 70/128 (54%), Positives = 88/128 (68%)

Query: 63  MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 122
           MG V+    + G  V+G+IP  L P EI    V E+  V  MH+RKA MAR ADAF+ALP
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPEEIPNPIVTELIIVPDMHERKAAMARLADAFVALP 60

Query: 123 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182
           GG+GTLEEL E++TW QLGIH KP+ LLN +GYY+ LL FID  V+EGFI+PAAR +I+ 
Sbjct: 61  GGFGTLEELFEILTWIQLGIHQKPIILLNPNGYYDPLLEFIDHMVEEGFISPAARELIIV 120

Query: 183 AQTAHELI 190
                E +
Sbjct: 121 VDDPEEAV 128

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein Back     alignment and domain information
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|129808 TIGR00725, TIGR00725, TIGR00725 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
TIGR00730178 conserved hypothetical protein, DprA/Smf-related, 100.0
COG1611205 Predicted Rossmann fold nucleotide-binding protein 100.0
TIGR00725159 conserved hypothetical protein, DprA/Smf-related, 100.0
PF03641133 Lysine_decarbox: Possible lysine decarboxylase; In 100.0
TIGR00732220 dprA DNA protecting protein DprA. Disruption of th 99.63
PF02481212 DNA_processg_A: DNA recombination-mediator protein 99.29
PRK10736374 hypothetical protein; Provisional 99.19
COG0758350 Smf Predicted Rossmann fold nucleotide-binding pro 98.99
PF12694145 MoCo_carrier: Putative molybdenum carrier; InterPr 96.47
KOG3614 1381 consensus Ca2+/Mg2+-permeable cation channels (LTR 95.16
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 94.8
PF06908177 DUF1273: Protein of unknown function (DUF1273); In 93.78
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 92.83
PF11071141 DUF2872: Protein of unknown function (DUF2872); In 92.61
PF1068671 DUF2493: Protein of unknown function (DUF2493); In 92.23
PRK10565508 putative carbohydrate kinase; Provisional 91.94
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 90.45
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 90.11
PRK13609380 diacylglycerol glucosyltransferase; Provisional 89.57
PLN02605382 monogalactosyldiacylglycerol synthase 89.42
TIGR03646144 YtoQ_fam YtoQ family protein. Members of this fami 89.4
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 88.92
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 88.36
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 88.16
PRK13660182 hypothetical protein; Provisional 87.9
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 86.66
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 86.45
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 86.43
PF04101167 Glyco_tran_28_C: Glycosyltransferase family 28 C-t 85.1
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 84.57
COG3660329 Predicted nucleoside-diphosphate-sugar epimerase [ 83.72
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 82.18
TIGR00661321 MJ1255 conserved hypothetical protein. This model 81.46
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2 Back     alignment and domain information 
Probab=100.00  E-value=2e-54  Score=362.02  Aligned_cols=178  Identities=47%  Similarity=0.853  Sum_probs=170.6

Q ss_pred             ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCCCCCceE
Q 027323           19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEV   98 (225)
Q Consensus        19 ~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~   98 (225)
                      |+|||||||+.+.++.|++.|++||++||++|+.||||||..|+|+|+++||+++||+|+||+|..+..++.+++.++++
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~   80 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL   80 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence            48999999999999999999999999999999999999996699999999999999999999999887777778888889


Q ss_pred             EecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCCCccccc
Q 027323           99 KAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY  178 (225)
Q Consensus        99 i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~  178 (225)
                      +++++|++||.+|++.||+||++|||+|||+|++++|+|.|+++|+||++++|.+|||+++++|+++|+++||++++..+
T Consensus        81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~  160 (178)
T TIGR00730        81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK  160 (178)
T ss_pred             EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEcCCHHHHHHHHHhh
Q 027323          179 IIVSAQTAHELICKLEEY  196 (225)
Q Consensus       179 ~i~~~~d~ee~~~~l~~~  196 (225)
                      .+++++|++|++++|+++
T Consensus       161 ~~~~~d~~~e~~~~i~~~  178 (178)
T TIGR00730       161 LIHVVSRPDELIEQVQNY  178 (178)
T ss_pred             cEEEcCCHHHHHHHHHhC
Confidence            999999999999999753

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1 Back     alignment and domain information
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway Back     alignment and domain information
>TIGR00732 dprA DNA protecting protein DprA Back     alignment and domain information
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins Back     alignment and domain information
>PRK10736 hypothetical protein; Provisional Back     alignment and domain information
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion] Back     alignment and domain information
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices Back     alignment and domain information
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis Back     alignment and domain information
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61 Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>TIGR03646 YtoQ_fam YtoQ family protein Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>PRK13660 hypothetical protein; Provisional Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
2a33_A215 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 4e-84
1ydh_A216 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 2e-59
1t35_A191 Crystal Structure Of A Hypothetical Protein Yvdd- A 2e-37
3qua_A199 Crystal Structure Of A Putative Uncharacterized Pro 4e-30
3sbx_A189 Crystal Structure Of A Putative Uncharacterized Pro 5e-22
1wek_A217 Crystal Structure Of The Conserved Hypothetical Pro 2e-05
1rcu_A195 X-Ray Structure Of Tm1055 Northeast Structural Geno 3e-05
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  307 bits (786), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 157/206 (76%), Positives = 180/206 (87%), Gaps = 1/206 (0%)
Query: 15  KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG 74
           KS+F+R+CVFCGSS GK  SYQ AA+ LG +LV RNIDLVYGGGSIGL GLVSQAV+DGG
Sbjct: 10  KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDGG 69
Query: 75  RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134
           RHV+G+IPKTL PRE+TG+TVGEV+AV+  HQRKAE A+ +DAFIALPGGYGTLEELLEV
Sbjct: 70  RHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLEV 129
Query: 135 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 194
           ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAV+EGFI+P AR IIVSA TA EL+ KLE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLE 189
Query: 195 EYVPKHSGVASNLSWEMEQQLGYTNK 220
           EY P H  VA+ L WE E ++GY+++
Sbjct: 190 EYAPCHERVATKLCWEXE-RIGYSSE 214
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 Length = 216 Back     alignment and structure
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A Putative Lysine Decarboxylase Length = 191 Back     alignment and structure
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein And Possible Molybdenum Cofactor Protein From Mycobacterium Smegmatis Length = 199 Back     alignment and structure
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Marinum Bound To Adenosine 5'-Monophosphate Amp Length = 189 Back     alignment and structure
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217 Back     alignment and structure
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics Consortium Target Vt76 Length = 195 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
1ydh_A216 AT5G11950; structural genomics, protein structure 1e-119
2a33_A215 Hypothetical protein; structural genomics, protein 1e-117
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 1e-109
3qua_A199 Putative uncharacterized protein; structural genom 1e-103
3sbx_A189 Putative uncharacterized protein; structural genom 1e-102
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 3e-66
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 8e-64
1rcu_A195 Conserved hypothetical protein VT76; structural ge 3e-63
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 9e-54
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 1e-27
3gh1_A462 Predicted nucleotide-binding protein; structural g 2e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216 Back     alignment and structure
 Score =  337 bits (867), Expect = e-119
 Identities = 131/211 (62%), Positives = 169/211 (80%)

Query: 15  KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG 74
           +SRF+++CVFCGS  G    +  AAI+LG +LV+R IDLVYGGGS+GLMGL+S+ VY+GG
Sbjct: 6   RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGG 65

Query: 75  RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134
            HVLG+IPK LMP EI+G+TVG+V+ V+ MH+RKA MA++A+AFIALPGGYGT+EELLE+
Sbjct: 66  LHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEM 125

Query: 135 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 194
           ITW+QLGIH K VGLLNVDGYYN+LL+  D  V+EGFI P AR I+VSA TA EL+ K+E
Sbjct: 126 ITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKME 185

Query: 195 EYVPKHSGVASNLSWEMEQQLGYTNKSDIAR 225
           EY P H  VAS+ SW++E+   Y  + +  +
Sbjct: 186 EYTPSHMHVASHESWKVEELGDYPGQENKPQ 216
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215 Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199 Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217 Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
1ydh_A216 AT5G11950; structural genomics, protein structure 100.0
2a33_A215 Hypothetical protein; structural genomics, protein 100.0
3sbx_A189 Putative uncharacterized protein; structural genom 100.0
3qua_A199 Putative uncharacterized protein; structural genom 100.0
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 100.0
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 100.0
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 100.0
3gh1_A462 Predicted nucleotide-binding protein; structural g 100.0
3bq9_A460 Predicted rossmann fold nucleotide-binding domain 100.0
1rcu_A195 Conserved hypothetical protein VT76; structural ge 100.0
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 100.0
3maj_A382 DNA processing chain A; MCSG, PSI-2, structural ge 99.35
3uqz_A288 DNA processing protein DPRA; SAM and rossmann fold 99.26
2nx2_A181 Hypothetical protein YPSA; structural genomics, un 97.59
3imk_A158 Putative molybdenum carrier protein; YP_461806.1, 97.58
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 94.9
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 94.9
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 94.83
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 94.56
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 93.88
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 91.87
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 91.85
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 90.81
2jzc_A224 UDP-N-acetylglucosamine transferase subunit ALG13; 90.5
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 90.07
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 89.34
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 88.75
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 88.68
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 87.63
1iir_A415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 87.59
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 87.31
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 86.46
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 86.3
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 84.69
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 83.26
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
Probab=100.00  E-value=4.9e-58  Score=393.12  Aligned_cols=202  Identities=64%  Similarity=1.125  Sum_probs=178.3

Q ss_pred             HhhcCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchHHHHHHHHHhcCCcEEEEecCccccCCCCC
Q 027323           13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITG   92 (225)
Q Consensus        13 ~~~~~~~~I~VfggS~~~~~~~~~~~A~~lG~~LA~~g~~lVtGGG~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~   92 (225)
                      ..+++|++|||||||+.+.++.|++.|++||++||++|+.||||||+.|+|+|+++||+++||+||||+|..+.++|..+
T Consensus         4 ~~~~~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~   83 (216)
T 1ydh_A            4 NQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISG   83 (216)
T ss_dssp             -CCCSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCS
T ss_pred             CcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCcccccc
Confidence            34578889999999999988999999999999999999999999998899999999999999999999999888888889


Q ss_pred             CCCceEEecCCHHHHHHHHHHhcCeEEEecCCCCcHHHHHHHHHHHHhCCCCCceEEEecCccchhHHHHHHHHHHcCCC
Q 027323           93 DTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFI  172 (225)
Q Consensus        93 ~~~~~~i~~~~m~~Rk~~mv~~sDa~IvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i  172 (225)
                      +.+++++++++|++||.+|+++||+||++|||+|||+|+||+|||.|+++|+|||+|+|.+|||+++++|+++|+++|||
T Consensus        84 ~~~~~~~~~~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi  163 (216)
T 1ydh_A           84 ETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFI  163 (216)
T ss_dssp             SCCSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSS
T ss_pred             CCCCcccccCCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccceEEcCCHHHHHHHHHhhcCCCCCCccccccccccc
Q 027323          173 APAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQ  214 (225)
Q Consensus       173 ~~~~~~~i~~~~d~ee~~~~l~~~~~~~~~~~~~~~w~~~~~  214 (225)
                      ++++.+++++++|++|+++.|+++.+.+.+....++|..++.
T Consensus       164 ~~~~~~~~~~~d~~ee~~~~l~~~~~~~~~~~~~~~~~~~~~  205 (216)
T 1ydh_A          164 KPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEEL  205 (216)
T ss_dssp             CHHHHTTEEEESSHHHHHHHHHHCC-----------------
T ss_pred             ChHHcCeEEEeCCHHHHHHHHHHhcccccccccccccchhhc
Confidence            999999999999999999999999988888888999998843
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Back     alignment and structure
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Back     alignment and structure
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 225
d2q4oa1183 c.129.1.1 (A:8-190) Hypothetical protein At2g37210 6e-57
d1ydhb_181 c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha 9e-57
d1t35a_179 c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus 3e-53
d1rcua_170 c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo 4e-36
d1weka_208 c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16 1e-35
d1weha_171 c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02 2e-32
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181 Back     information, alignment and structure
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 100.0
d1ydhb_181 Hypothetical protein At5g11950 {Thale cress (Arabi 100.0
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 100.0
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 100.0
d1weha_171 Hypothetical protein TT1887 (TTHA0294) {Thermus th 100.0
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 100.0
d2nx2a1177 Hypothetical protein YpsA {Bacillus subtilis [TaxI 96.71
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 94.23
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 93.8
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 93.18
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 85.98
d2bona1295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 83.54
d1kyha_275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 83.51
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 80.99
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure